VV TRANSFAC MATRIX TABLE, Release 9.3 - licensed - 2005-09-30, (C) Biobase GmbH XX // AC M00001 XX ID V$MYOD_01 XX DT 19.10.1992 (created); ewi. DT 22.10.1997 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA MyoD XX DE myoblast determination gene product XX BF T00526; MyoD; Species: mouse, Mus musculus. XX P0 A C G T 01 1 2 2 0 S 02 2 1 2 0 R 03 3 0 1 1 A 04 0 5 0 0 C 05 5 0 0 0 A 06 0 0 4 1 G 07 0 1 4 0 G 08 0 0 0 5 T 09 0 0 5 0 G 10 0 1 2 2 K 11 0 2 0 3 Y 12 1 0 3 1 G XX BA 5 functional elements in 3 genes XX CC no comment XX // AC M00002 XX ID V$E47_01 XX DT 19.10.1992 (created); ewi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA E47 XX DE E47 XX BF T00207; E47; Species: human, Homo sapiens. XX P0 A C G T 01 4 4 3 0 V 02 2 5 4 0 S 03 3 2 4 2 N 04 2 0 9 0 G 05 0 11 0 0 C 06 11 0 0 0 A 07 0 0 11 0 G 08 1 2 8 0 G 09 0 0 0 11 T 10 0 0 11 0 G 11 0 0 4 7 K 12 1 4 3 3 N 13 1 6 2 2 C 14 1 4 4 2 N 15 1 4 2 3 N XX BA 11 selected strong binding sites for E47, E47-MyoD, E12+MyoD and (weak) for E12 XX BS GCTGCAGGTGTTCT; R05108; 3; 15; 17; p. BS AAGGCAGGTGGCCCA; R05109; 1; 15;; p. BS GCAGCAGGTGTTCCC; R05110; 5; 15;; p. BS AGGGCAGGTGTCCGG; R05111; 5; 15;; p. BS GGGGCAGGTGGTGGT; R05112; 8; 15;; p. BS CGTACAGATGTGGAT; R05113; 9; 15;; p. BS ACCGCAGCTGGCCCT; R05114; 8; 15;; p. BS CAAGCAGGTGTATCC; R05115; 7; 15;; p. BS CCCACAGCTGGGATC; R05116; 11; 15;; p. BS CCAGCAGGTGTGTGC; R05117; 5; 15;; p. BS AGGGCAGGTGTCCGG; R05118; 5; 15;; p. XX CC Group I in [1]; 5 sites selected in vitro for binding to E12N (=N-terminally truncated E12); matrix corrected according to the published sequences XX RN [1]; RE0000231. RX PUBMED: 1846322. RA Sun X.-H., Baltimore D. RT An inhibitory domain of E12 transcription factor prevents DNA binding in E12 homodimers but not in E12 heterodimers RL Cell 64:459-470 (1991). XX // AC M00003 XX ID V$VMYB_01 XX DT 19.10.1992 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA v-Myb XX DE v-Myb XX BF T00895; v-Myb; Species: AMV, avian myeloblastosis virus. XX P0 A C G T 01 13 4 4 3 A 02 14 3 5 2 A 03 2 7 1 14 T 04 23 0 0 1 A 05 24 0 0 0 A 06 1 23 0 0 C 07 0 1 17 6 G 08 1 1 21 1 G 09 11 5 4 4 N 10 12 5 2 5 A XX BA 21 sites isolated from total chromatin + 3 sites from mim-1 promoter XX BS GATAACGGTT; R05119; 1; 10;; p. BS CCAAACTGCC; R05120; 1; 10;; p. BS ATGAACTGTG; R05121; 1; 10;; p. BS GGTAACGGGC; R05122; 1; 10;; p. BS CGCAACGCCC; R05123; 1; 10;; p. BS ACCAACGGCC; R05124; 1; 10;; p. BS AACAACGGTT; R05125; 1; 10;; p. BS GTCAACTGCT; R05126; 1; 10;; p. BS AACAACGGAA; R05127; 1; 10;; p. BS AATAACGGAA; R05128; 1; 10;; p. BS AATAACGGAA; R05129; 1; 10;; p. BS AATAACGGAA; R05130; 1; 10;; p. BS AATAACGGAA; R05131; 1; 10;; p. BS AATAACGGAA; R05132; 1; 10;; p. BS AATAACGGAA; R05133; 1; 10;; p. BS AATAACGGAA; R05134; 1; 10;; p. BS CATAACGGAA; R05135; 1; 10;; p. BS GCTAACGGCA; R05136; 1; 10;; p. BS TGAAACTTGG; R05137; 1; 10;; p. BS TACAACTGAA; R05138; 1; 10;; p. BS AGCAACTGAC; R05139; 1; 10;; p. BS TATAACGGTT; R05140; 10; 10;; p. BS AGTAACGGGT; R05141; 10; 10;; p. BS CATTAACAGA; R05142; 9; 10;; p. XX RN [1]; RE0000112. RX PUBMED: 2688896. RA Ness S. A., Marknell A., Graf T. RT The v-myb oncogene product binds to and activates the promyelocyte-specific mim-1 gene RL Cell 59:1115-1125 (1989). RN [2]; RE0001835. RX PUBMED: 3185713. RA Biedenkapp H., Borgmeyer U., Sippel A., Klempnauer K.-H. RT Viral myb oncogene encodes a sequence-specific DNA-binding activity RL Nature 335:835-837 (1988). XX // AC M00004 XX ID V$CMYB_01 XX DT 19.10.1992 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA c-Myb XX DE c-Myb XX BF T00138; c-Myb; Species: mouse, Mus musculus. XX P0 A C G T 01 1 12 6 8 N 02 6 15 5 1 C 03 6 10 9 5 N 04 16 5 14 3 R 05 16 11 8 2 N 06 9 16 8 16 N 07 8 4 34 5 G 08 20 1 25 5 R 09 4 49 2 5 C 10 18 18 20 4 N 11 0 0 60 0 G 12 0 0 0 60 T 13 0 0 0 60 T 14 11 1 47 1 G 15 6 6 21 5 G 16 1 7 15 11 K 17 2 2 12 4 G 18 1 0 11 1 G XX BA 9 c-Myb binding sites in SV40 DNA + 51 selected single binding sites XX CC Matrix of [1] has been inverted to be compatible XX RN [1]; RE0002147. RX PUBMED: 1861984. RA Howe K. M., Watson R. J. RT Nucleotide preferences in sequence-specific recognition of DNA by c-myb protein RL Nucleic Acids Res. 19:3913-3919 (1991). RN [2]; RE0000977. RX PUBMED: 2154480. RA Nakagoshi H., Nagase T., Kanei-Ishii C., Ueno Y., Ishii S. RT Binding of the c-myb proto-oncogene product to the simian virus 40 enhancer stimulates transcription RL J. Biol. Chem. 265:3479-3483 (1990). XX // AC M00005 XX ID V$AP4_01 XX DT 19.10.1992 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA AP-4 XX DE activator protein 4 XX BF T00036; AP-4; Species: human, Homo sapiens. XX P0 A C G T 01 3 0 0 2 W 02 1 1 3 0 G 03 3 1 1 0 A 04 2 1 2 0 R 05 1 2 0 2 Y 06 0 5 0 0 C 07 5 0 0 0 A 08 0 0 5 0 G 09 0 5 0 0 C 10 0 0 1 4 T 11 0 1 4 0 G 12 0 2 1 2 Y 13 1 0 3 1 G 14 0 0 5 0 G 15 1 1 1 2 N 16 1 4 0 0 C 17 2 1 1 1 N 18 0 0 3 2 K XX BA 5 elements from 5 genes XX BS AGAACCAGCTGTGGAATG; R05143; 7; 18;; p. BS AAAAACAGCTGTTGTCAT; R05144; 7; 18;; p. BS TGCGTCAGCTGCAGCCCG; R05145; 7; 18;; p. BS ACGGCCAGCTGCGGTCAG; R05146; 7; 18;; p. BS TGACTCAGCGCGGGGCGT; R05147; 7; 18;; p. XX CC compiled sequences XX RN [1]; RE0001814. RX PUBMED: 2833704. RA Mermod N., Williams T. J., Tjian R. RT Enhancer binding factors AP-4 and AP-1 act in concert to activate SV40 late transcription in vitro RL Nature 332:557-561 (1988). XX // AC M00006 XX ID V$MEF2_01 XX DT 19.10.1992 (created); ewi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA MEF-2 XX DE myogenic enhancer factor 2 XX BF T00505; aMEF-2; Species: mouse, Mus musculus. BF T01005; MEF-2A; Species: human, Homo sapiens. BF T01004; MEF-2A; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 3 1 1 C 02 0 0 1 4 T 03 0 4 0 1 C 04 0 0 0 5 T 05 5 0 0 0 A 06 5 0 0 0 A 07 5 0 0 0 A 08 5 0 0 0 A 09 5 0 0 0 A 10 0 0 0 5 T 11 5 0 0 0 A 12 5 0 0 0 A 13 0 5 0 0 C 14 0 2 0 3 Y 15 0 4 0 1 C 16 0 2 0 3 Y XX BA 5 elements from 2 different genes (mouse/human/rat mck; rat/chicken mlc) XX BS CTCTAAAAATAACCCT; R05148; 1; 16;; p. BS CTCTAAAAATAACTCC; R05149; 1; 16;; p. BS CTCTAAAAATAACTCT; R05150; 1; 16;; p. BS TTTTAAAAATAACTTT; R05151; 1; 16;; p. BS GGCTAAAAATAACCCC; R05152; 1; 16;; p. XX CC compiled sequences XX RN [1]; RE0001228. RX PUBMED: 2601707. RA Gossett L. A., Kelvin D. J., Sternberg E. A., Olson E. N. RT A new myocyte-specific enhancer-binding factor that recognizes a conserved element associated with multiple muscle-specific genes RL Mol. Cell. Biol. 9:5022-5033 (1989). XX // AC M00007 XX ID V$ELK1_01 XX DT 27.10.1992 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Elk-1 XX DE Elk-1 XX BF T00250; Elk-1; Species: human, Homo sapiens. XX P0 A C G T 01 1 1 1 1 N 02 2 0 1 1 A 03 2 1 1 0 A 04 3 0 1 0 A 05 0 3 1 0 C 06 2 2 0 0 M 07 0 0 4 0 G 08 0 0 4 0 G 09 4 0 0 0 A 10 3 0 0 1 A 11 0 0 4 0 G 12 0 1 0 3 T 13 1 1 1 1 N 14 1 3 0 0 C 15 1 1 2 0 V 16 1 1 0 2 H XX BA 4 functional and binding elements from 4 genes XX BS ATAACCGGAAGTAACT; R05153; 14; 16;; p. BS GAGAGCGGAAGCGCGC; R05154; 9; 16;; p. BS CGAGCAGGAAGTTCGA; R05155; 6; 16;; p. BS TACACAGGATGTCCAT; R05156; 3; 16;; p. XX CC compiled sequences XX RN [1]; RE0000195. RX PUBMED: 1339307. RA Dalton S., Treisman R. RT Characterization of SAP-1, a protein recruited by serum response factor to the c-fos serum response element RL Cell 68:597-612 (1992). RN [2]; RE0002240. RX PUBMED: 1741166. RA Rao V. N., Reddy E. Sh. P. RT A divergent ets-related protein, Elk-1, recognizes similar c-ets-1 proto-oncogene target sequences and acts as a transcriptional activator RL Oncogene 7:65-70 (1992). XX // AC M00008 XX ID V$SP1_01 XX DT 27.10.1992 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Sp1 XX DE stimulating protein 1 XX BF T00759; Sp1; Species: human, Homo sapiens. XX P0 A C G T 01 2 1 6 2 G 02 3 1 6 1 G 03 0 0 11 0 G 04 0 0 11 0 G 05 0 8 2 1 C 06 3 0 6 2 G 07 0 1 7 3 G 08 1 0 8 2 G 09 1 2 7 1 G 10 3 2 0 6 T XX BA 11 sites selected by TDA XX BS GAGGCGCGGA; R05157; 1; 10;; p. BS GAGGGGTGGT; R05158; 1; 10;; p. BS TCGGGGTGGT; R05159; 1; 10;; p. BS AGGGCAGGCT; R05160; 1; 10;; p. BS AGGGCGTATA; R05161; 1; 10;; p. BS GTGGCGGTGT; R05162; 1; 10;; p. BS TGGGTAGGGA; R05163; 1; 10;; p. BS GAGGCGGGCC; R05164; 1; 10;; p. BS CGGGCTGGAT; R05165; 1; 10;; p. BS GGGGCTGTGT; R05166; 1; 10;; p. BS GGGGCAGGGC; R05167; 1; 10;; p. XX RN [1]; RE0002113. RX PUBMED: 2192357. RA Thiesen H.-J., Bach C. RT Target detection assay (TDA): a versatile procedure to determine DNA binding sites as demonstrated on SP1 protein RL Nucleic Acids Res. 18:3203-3209 (1990). XX // AC M00009 XX ID I$TTK69_01 XX DT 03.11.1992 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Ttk 69K XX DE Tramtrack 69K XX BF T00843; Ttk 69K; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0 0 4 0 G 02 0 1 3 0 G 03 0 0 0 4 T 04 0 4 0 0 C 05 0 4 0 0 C 06 0 0 0 4 T 07 0 0 4 0 G 08 0 3 1 0 C XX BA 4 elements of the eve gene XX CC compiled sequences XX RN [1]; RE0000513. RX PUBMED: 1372245. RA Read D., Manley J. L. RT Alternatively spliced transcripts of the Drosophila tramtrack gene encode zinc finger proteins with distinct DNA binding specificities RL EMBO J. 11:1035-1044 (1992). RN [2]; RE0001450. RX PUBMED: 2370868. RA Read D., Nishigaki T., Manley J. L. RT The Drosophila Even-Skipped Promoter Is Transcribed in a Stage-Specific Manner In Vitro and Contains Multiple, Overlapping Factor-Binding Sites RL Mol. Cell. Biol. 10:4334-4344 (1990). XX // AC M00010 XX ID P$O2_01 XX DT 09.11.1992 (created); ewi. DT 02.07.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA O2 XX DE Opaque-2 XX BF T00668; Opaque-2; Species: maize, Zea mays. XX P0 A C G T 01 0 0 0 5 T 02 0 5 0 0 C 03 5 0 0 0 A 04 0 0 0 5 T 05 0 0 0 5 T 06 0 5 0 0 C 07 0 5 0 0 C 08 5 0 0 0 A 09 0 5 0 0 C 10 0 0 5 0 G 11 0 0 0 5 T 12 5 0 0 0 A 13 0 0 5 0 G 14 5 0 0 0 A 15 0 0 0 5 T 16 3 0 2 0 R XX BA 5 O2 target sites out of 5 maize 22-kD zein genes XX BS TCATTCCACGTAGATG; R02296; 3; 16;; p. BS TCATTCCACGTAGATA; R02297; 12; 16;; p. BS TCATTCCACGTAGATA; R02298; 12; 16;; p. BS TCATTCCACGTAGATG; R02299; 12; 16;; p. BS TCATTCCACGTAGATA; R02303; 12; 16;; p. XX CC compiled sequences XX RN [1]; RE0002252. RX PUBMED: 1392590. RA Schmidt R. J., Ketudat M., Aukerman M. J., Hoschek G. RT Opaque-2 is a transcriptional activator that recognizes a specific target site in 22-kD zein genes RL Plant Cell 4:689-700 (1992). XX // AC M00011 XX ID V$EVI1_06 XX DT 09.11.1992 (created); ewi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Evi-1 XX DE ectopic viral integration site 1 encoded factor XX BF T00273; Evi-1; Species: mouse, Mus musculus. XX P0 A C G T 01 16 0 0 0 A 02 0 16 0 0 C 03 15 0 0 1 A 04 16 0 0 0 A 05 0 0 16 0 G 06 16 0 0 0 A 07 0 0 0 16 T 08 15 0 0 1 A 09 12 1 3 0 A XX BA 16 sites selected from random oligonucleotides XX BS ACAAGATAA; R05176; 4; 9;; p. BS ACAAGATAA; R05177; 4; 9;; p. BS ACAAGATAA; R05178; 4; 9;; p. BS ACAAGATAG; R05179; 4; 9;; p. BS ACAAGATAA; R05180; 4; 9;; p. BS ACAAGATAA; R05181; 4; 9;; p. BS ACAAGATAA; R05182; 4; 9;; p. BS ACAAGATAG; R05183; 4; 9;; p. BS ACAAGATTA; R05184; 4; 9;; p. BS ACAAGATAA; R05185; 4; 9;; p. BS ACAAGATAA; R05186; 4; 9;; p. BS ACAAGATAC; R05187; 4; 9;; p. BS ACAAGATAA; R05188; 4; 9;; p. BS ACAAGATAG; R05189; 4; 9;; p. BS ACTAGATAA; R05190; 4; 9;; p. BS ACAAGATAA; R05191; 4; 9;; p. XX RN [1]; RE0001648. RX PUBMED: 2017172. RA Perkins A. S., Fishel R., Jenkins N. A., Copeland N. G. RT Evi-1, a murine zinc finger proto-oncogene, encodes a sequence-specific DNA-binding protein RL Mol. Cell. Biol. 11:2665-2674 (1991). XX // AC M00012 XX ID I$CF2II_01 XX DT 10.11.1992 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA CF2-II XX DE CF2-II XX BF T00120; CF2-II; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 33 15 51 1 R 02 0 6 0 94 T 03 94 0 6 0 A 04 0 8 4 88 T 05 94 2 4 0 A 06 1 4 0 95 T 07 51 3 41 5 R 08 2 13 2 83 T 09 63 6 26 5 A XX BA 80 binding sites selected from random oligonucleotides; 4th cycle XX RN [1]; RE0002672. RX PUBMED: 1290524. RA Gogos J. A., Hsu T., Bolton J., Kafatos F. C. RT Sequence discrimination by alternatively spliced isoforms of a DNA binding Zinc finger domain RL Science 257:1951-1955 (1992). XX // AC M00013 XX ID I$CF2II_02 XX DT 10.11.1992 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA CF2-II XX DE CF2-II XX BF T00120; CF2-II; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 26 4 67 0 G 02 0 7 0 93 T 03 94 0 6 0 A 04 0 9 1 90 T 05 96 1 3 0 A 06 0 4 0 96 T 07 70 3 26 1 A 08 3 7 0 90 T 09 81 0 16 3 A XX BA 70 binding sites selected from random oligonucleotides; 5th cycle XX RN [1]; RE0002672. RX PUBMED: 1290524. RA Gogos J. A., Hsu T., Bolton J., Kafatos F. C. RT Sequence discrimination by alternatively spliced isoforms of a DNA binding Zinc finger domain RL Science 257:1951-1955 (1992). XX // AC M00014 XX ID F$REPCAR1_01 XX DT 13.11.1992 (created); ewi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA repressor of CAR1 expression XX DE repressor of CAR1 expression XX BF T00726; repressor of CAR1 expression; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 2 3 3 4 N 02 5 2 2 3 N 03 2 5 4 4 N 04 1 0 2 12 T 05 14 0 0 1 A 06 2 0 13 0 G 07 0 15 0 0 C 08 0 15 0 0 C 09 2 0 12 1 G 10 0 14 1 0 C 11 0 13 2 0 C 12 5 2 7 1 R 13 10 2 2 1 A 14 6 3 5 1 N 15 6 2 7 0 R 16 4 4 5 1 N 17 4 5 4 1 N XX BA 15 elements; 1 repressing element (CAR1 gene) and 14 homologous binding sites XX CC compiled sequences XX RN [1]; RE0001517. RX PUBMED: 2115115. RA Luche R. M., Sumrada R., Cooper T. G. RT A cis-acting element present in multiple genes serves as a repressor protein binding site for the yeast CAR1 gene RL Mol. Cell. Biol. 10:3884-3895 (1990). XX // AC M00015 XX ID F$ABF1_01 XX DT 16.11.1992 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA ABF1 XX DE ARS binding factor 1 XX BF T00056; ABF1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 7 6 3 7 N 02 6 10 4 4 N 03 13 0 4 7 W 04 4 6 4 10 N 05 15 0 9 0 R 06 0 0 1 23 T 07 1 23 0 0 C 08 18 0 5 1 A 09 0 10 0 14 Y 10 1 3 4 16 T 11 11 4 3 6 N 12 4 4 1 15 T 13 13 2 4 5 A 14 6 5 5 8 N 15 24 0 0 0 A 16 0 24 0 0 C 17 0 0 24 0 G 18 10 0 6 8 D 19 12 3 5 4 A 20 9 5 3 6 N 21 6 7 6 4 N 22 7 4 2 10 N XX BA 24 identified genomic binding sites for ABF1-related factors XX CC compiled sequences XX RN [1]; RE0000935. RX PUBMED: 2203770. RA Della Seta F., Treich I., Buhler J.-M., Sentenac A. RT ABF1 binding sites in yeast RNA polymerase genes RL J. Biol. Chem. 265:15168-15175 (1990). XX // AC M00016 XX ID I$E74A_01 XX DT 17.11.1992 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA E74A XX DE E74A XX BF T00208; E74A; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 4 5 2 3 N 02 3 3 6 2 N 03 11 1 2 1 A 04 11 0 2 3 A 05 2 7 2 6 Y 06 2 12 2 1 C 07 5 12 0 0 C 08 0 0 17 0 G 09 0 0 17 0 G 10 17 0 0 0 A 11 17 0 0 0 A 12 5 1 10 1 G 13 1 2 1 11 T 14 3 2 7 3 N 15 5 3 4 3 N 16 2 1 6 5 K 17 2 3 6 1 N XX BA 17 recognition sequences selected from random oligonucleotides XX BS CGGATGCGGAAATTCTA; R05287; 2; 17;; p. BS CTCACCCGGAAG; R05288; 2; 17; 14, 15, 16, 17, 18; p. BS TCAAGTAGGAAGTGAGG; R05289; 1; 17;; p. BS CGAACCCGGAAC; R05290; 2; 17; 14, 15, 16, 17, 18; p. BS CGAATCAGGAAAACTG; R05291; 2; 17; 18; p. BS GGATTGCGGAAATTACC; R05292; 2; 17;; p. BS ACAGTCAGGAAGTAGAG; R05293; 2; 17;; p. BS CCAAACCGGAATGATTC; R05294; 1; 17;; p. BS AAATCACGGAAGTGAA; R05295; 2; 17; 18; p. BS AATCCGGAAACGATG; R05296; 1; 17; 1, 2; p. BS AAAGGCAGGAAGTGGTA; R05297; 2; 17;; p. BS TAATCCCGGAAGTGGGC; R05298; 1; 17;; p. BS AGTACCCGGAAATCT; R05299; 2; 17; 17, 18; p. BS ACAGGAAGTAGGG; R05300; 1; 17; 1, 2, 3, 4; p. BS TTAACACGGAAGTTCTT; R05301; 2; 17;; p. BS GGGACCCGGAAGTGAGG; R05302; 2; 17;; p. BS ATCCGGAAGCGCGG; R12320; 1; 17; 1, 2, 3; p. XX RN [1]; RE0000205. RX PUBMED: 2208281. RA Urness L. D., Thummel C. S. RT Molecular interactions within the ecdysone regulatory hierarchy: DNA binding properties of the Drosophila ecdysone-inducible E74A protein RL Cell 63:47-61 (1990). XX // AC M00017 XX ID V$ATF_01 XX DT 17.11.1992 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA ATF XX DE activating transcription factor XX BF T00051; ATF; Species: human, Homo sapiens. XX P0 A C G T 01 5 14 2 4 C 02 2 6 8 9 N 03 3 10 10 2 S 04 0 0 0 25 T 05 0 0 25 0 G 06 25 0 0 0 A 07 0 25 0 0 C 08 0 0 25 0 G 09 4 2 1 18 T 10 7 11 3 4 N 11 9 1 7 8 N 12 6 7 7 5 N 13 1 11 4 9 Y 14 2 13 5 5 C XX BA 25 known binding sites in 15 genes XX BS CGTTGACGACAACC; R05303; 1; 14;; p. BS CCCTGACGTGTCCC; R05304; 1; 14;; p. BS CTCTGACGTCTCCC; R05305; 1; 14;; p. BS CTCTGACGATTACC; R05306; 1; 14;; p. BS CCCTGACGTCCCTC; R05307; 1; 14;; p. BS TGCTGACGGCAGCT; R05308; 1; 14;; p. BS AGCTGACGTCTCTG; R05309; 1; 14;; p. BS CTCTGACGTCAGCC; R05310; 1; 14;; p. BS CCGTGACGTCACCC; R05311; 1; 14;; p. BS CCGTGACGTTTACA; R05312; 1; 14;; p. BS TGCTGACGCAGATG; R05313; 1; 14;; p. BS AGCTGACGCAGGCC; R05314; 1; 14;; p. BS CCATGACGTCAATT; R05315; 1; 14;; p. BS CCATGACGTCAATT; R05316; 1; 14;; p. BS CTTTGACGTCAGCC; R05317; 1; 14;; p. BS CTCTGACGTAAGGG; R05318; 1; 14;; p. BS CTGTGACGTCTTTC; R05319; 1; 14;; p. BS TTGTGACGTGGCGC; R05320; 1; 14;; p. BS GGGTGACGTAGTAG; R05321; 1; 14;; p. BS AAGTGACGTTTTTG; R05322; 1; 14;; p. BS AGATGACGTAGTTT; R05323; 1; 14;; p. BS CTGTGACGAAAGCC; R05324; 1; 14;; p. BS AAGTGACGATTTGA; R05325; 1; 14;; p. BS GGGTGACGTAGGTT; R05326; 1; 14;; p. BS TTGTGACGTGGCGC; R05327; 1; 14;; p. XX CC slightly differing from E4 consensus XX RN [1]; RE0001527. RX PUBMED: 2169022. RA Rooney R. J., Raychaudhuri P., Nevins J. R. RT E4F and ATF, two transcription factors that recognize the same site, can be distinguished both physically and functionally: a role for E4F in E1A trans activation RL Mol. Cell. Biol. 10:5138-5149 (1990). XX // AC M00018 XX ID I$UBX_01 XX DT 30.11.1992 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Ubx XX DE Ultrabithorax XX BF T02101; Ubx; Species: fruit fly, Drosophila pseudoobscura. BF T03848; Ubx; Species: red flour beetle, Tribolium castaneum. BF T02102; Ubx; Species: fruit fly, Drosophila funebris. BF T00863; Ubx; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 4 4 12 7 N 02 9 5 8 8 N 03 9 7 14 4 N 04 7 7 20 7 N 05 12 9 18 6 N 06 9 18 16 12 N 07 9 13 8 32 T 08 3 0 0 76 T 09 74 3 3 6 A 10 85 0 2 1 A 11 0 3 3 82 T 12 8 4 41 21 K 13 13 3 41 2 G 14 9 23 17 8 N 15 6 17 11 20 N 16 11 11 4 22 N 17 9 14 7 11 N 18 6 5 15 4 N 19 4 3 7 10 N XX BA 88 selected binding sequences XX BS GACGGCTTAAT; R05328; 1; 19;; p. BS GAATGGGTAATA; R05329; 1; 19;; p. BS CGACTAATTGCA; R05330; -3; 19;; p. BS CTAATTATTACT; R05331; -6; 19;; p. BS GCGGGACTAAT; R05332; 1; 19;; p. BS ATCATGGCCCC; R05333; -6; 19;; p. BS TAATACCCA; R05334; -7; 19;; p. BS TAATTGGGTGGA; R05335; -7; 19;; p. BS CCCTAATGGGCA; R05336; -4; 19;; p. BS AGGTAGCTAAT; R05337; 1; 19;; p. BS TAAATATTAATG; R05338; 1; 19;; p. BS GCGTACGTAGT; R05339; 1; 19;; p. BS CTTAATGACCTC; R05340; -5; 19;; p. BS TAATTGGTTCTG; R05341; -7; 19;; p. BS GTATAATGGCAT; R05342; -4; 19;; p. BS GCGGACTTAATG; R05343; 1; 19;; p. BS TAATGGGTTGGG; R05344; -7; 19;; p. BS TACTTAATGGGG; R05345; -3; 19;; p. BS TAATGACTTGGT; R05346; -7; 19;; p. BS TACTCCTTAATT; R05347; 1; 19;; p. BS TTTTATGGTTTA; R05348; -5; 19;; p. BS AATTGCACCGG; R05349; -8; 19;; p. BS CTTAATGGGCAC; R05350; -5; 19;; p. BS GTCAGATTTATC; R05351; 1; 19;; p. BS GGGGTAATAAAG; R05352; -3; 19;; p. BS GGACTTTATGTT; R05353; -2; 19;; p. BS CGGTGGTTAAT; R05354; 1; 19;; p. BS ACTAATGTAAT; R05355; 1; 19;; p. BS ATAGTTCAGT; R05356; -9; 19;; p. BS CTGTTAATGGACC; R05357; -3; 19;; p. BS GGCGCGTTAAT; R05358; 1; 19;; p. BS TAATTACGTAGT; R05359; -7; 19;; p. BS GTACCGGTAATT; R05360; 1; 19;; p. BS TAATTGATTCAA; R05361; -7; 19;; p. BS GTTAATTAGGTG; R05362; -5; 19;; p. BS GAACGGATAAT; R05363; 1; 19;; p. BS CTAATTACCCCC; R05364; -6; 19;; p. BS AGGTCTGATGA; R05365; -2; 19;; p. BS AGTGTCGTAAT; R05366; 1; 19;; p. BS GATGGATTAAT; R05367; 1; 19;; p. BS TTTAATGGCTAT; R05368; -5; 19;; p. BS TAATGGACTGGT; R05369; -7; 19;; p. BS ACCTAATGGCCC; R05370; -4; 19;; p. BS TATGGGTTTAT; R05371; 1; 19;; p. BS ATAATGGCTGTC; R05372; -6; 19;; p. BS TAATGAGTCC; R05373; -7; 19;; p. BS TCATGGTTTTAT; R05374; -7; 19;; p. BS TTAACGACCTCA; R05375; -6; 19;; p. BS TTGAAGCTAATG; R05376; 1; 19;; p. BS AGGGATAATTGC; R05377; -2; 19;; p. BS TTATTGCCCATG; R05378; -6; 19;; p. BS AAGGTGTCAGC; R05379; -8; 19;; p. BS TTTAACGAGGAA; R05380; -5; 19;; p. BS TAATGGACTCTA; R05381; -7; 19;; p. BS ATTAATGGCAC; R05382; -5; 19;; p. BS GGGCACTTAAT; R05383; 1; 19;; p. BS AATGAGGTTCT; R05384; -8; 19;; p. BS CGGGACTTAACG; R05385; 1; 19;; p. BS TTAAATTGGCCA; R05386; -5; 19;; p. BS ATAATTGAGGTG; R05387; -6; 19;; p. BS AATAGGCTTCA; R05388; -8; 19;; p. BS AAATGGGGTCGG; R05389; -7; 19;; p. BS AAATGGGGTCGG; R05390; -7; 19;; p. BS TCGTTAATGGAC; R05391; -3; 19;; p. BS GTGACCCTAATT; R05392; 1; 19;; p. BS TTTTATGGGCTT; R05393; -5; 19;; p. BS TAGTTGAGGGGG; R05394; -7; 19;; p. BS GCAGCATAATCG; R05395; -1; 19;; p. BS TAATAGCTAAGT; R05396; -7; 19;; p. BS ATCAAAATAATT; R05397; 1; 19;; p. BS TAATAGCTAAGT; R05398; -7; 19;; p. BS TTGGTTATAAGC; R05399; 1; 19;; p. BS TAATGGCCTTCC; R05400; -7; 19;; p. BS GGTGTTGATGCC; R05401; -2; 19;; p. BS CGAGCTTTTAT; R05402; 1; 19;; p. BS GGTGATGAGATT; R05403; -5; 19;; p. BS ATTGTTCTAG; R05404; -9; 19;; p. BS AATTGTTACAT; R05405; -8; 19;; p. BS GCCCTAATTGCT; R05406; -3; 19;; p. BS AATGGCTAGTT; R05407; -8; 19;; p. BS TCCCACTTAAT; R05408; 1; 19;; p. BS TGGGTTTAATT; R05409; -1; 19;; p. BS AATGGATTAAC; R05410; -8; 19;; p. BS GGACTCATCGTT; R05411; -3; 19;; p. BS AGGGAGTAATA; R05412; -1; 19;; p. BS TTACTTCTAATG; R05413; 1; 19;; p. BS CGTTAAGGGCAG; R05414; -4; 19;; p. BS CAAGGCTTAATG; R05415; 1; 19;; p. XX CC 3 rounds of binding and amplification of random dodekamers bound to the bacterially expressed Ubx homeodomain XX RN [1]; RE0002792. RX PUBMED: 1673656. RA Ekker S. C., Young K. E., von Kessler D. P., Beachy P. A. RT Optimal DNA sequence recognition by the Ultrabithorax homeodomain of Drosophila RL EMBO J. 10:1179-1186 (1991). XX // AC M00019 XX ID I$DFD_01 XX DT 30.11.1992 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Dfd XX DE Deformed XX BF T00193; Dfd; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0.99 1.03 0.99 0.99 N 02 1.01 0.97 1.01 1.01 N 03 1.13 0.93 1.05 0.89 N 04 0.98 0.90 1.23 0.89 N 05 0.80 1.09 1.12 0.99 N 06 1.42 0.61 1.40 0.57 N 07 4.00 0.00 0.00 0.00 A 08 0.00 0.00 0.00 4.00 T 09 0.00 0.00 0.00 4.00 T 10 4.00 0.00 0.00 0.00 A 11 1.25 1.79 0.45 0.51 M 12 0.33 1.32 0.26 2.09 Y 13 0.97 0.83 1.02 1.17 N 14 0.97 0.82 1.37 0.85 N 15 1.01 0.99 1.03 0.97 N 16 0.99 1.01 0.98 1.03 N XX BA 57 selected sequences, normalized to a sum of 4 for all 4 bases in each position; central ATTA was fixed XX RN [1]; RE0000488. RX PUBMED: 1356765. RA Ekker S. C., von Kessler D. P., Beachy Ph. A. RT Differential DNA sequence recognition is a determinant of specificity in homeotic gene action RL EMBO J. 11:4059-4072 (1992). XX // AC M00020 XX ID I$FTZ_01 XX DT 30.11.1992 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Ftz XX DE fushi tarazu XX BF T00295; Ftz; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 5 2 2 0 A 02 4 2 2 1 N 03 4 0 2 3 W 04 2 2 5 0 G 05 0 6 0 3 C 06 7 0 1 1 A 07 9 0 0 0 A 08 0 0 0 9 T 09 0 0 0 9 T 10 9 0 0 0 A 11 9 0 0 0 A 12 0 0 9 0 G XX BA 9 selected sequences bound by the Ftz homeo domain, ATTAAG was fixed ! XX BS CTAGTAATTAAG; R05416; 1; 12;; p. BS AAAGCTATTAAG; R05417; 1; 12;; p. BS AATCTAATTAAG; R05418; 1; 12;; p. BS AAAGCGATTAAG; R05419; 1; 12;; p. BS GCTGCAATTAAG; R05420; 1; 12;; p. BS GAGGTAATTAAG; R05421; 1; 12;; p. BS AGACCAATTAAG; R05422; 1; 12;; p. BS AGTACAATTAAG; R05423; 1; 12;; p. BS CCGACAATTAAG; R05424; 1; 12;; p. XX CC only sequences with KD < 4xKD(consensus) were taken XX RN [1]; RE0002815. RX PUBMED: 1675428. RA Florence B., Handrow R., Laughon A. RT DNA-binding specificity of th fushi tarazu homeodomain RL Mol. Cell. Biol. 11:3613-3623 (1991). XX // AC M00021 XX ID I$KR_01 XX DT 03.12.1992 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Kr XX DE Krueppel XX BF T00456; Kr; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 5 0 1 0 A 02 3 2 0 1 M 03 1 3 0 2 Y 04 0 0 6 0 G 05 0 0 6 0 G 06 1 0 5 0 G 07 1 0 0 5 T 08 0 0 0 6 T 09 4 0 1 1 A 10 3 1 0 2 W XX BA 6 Krueppel binding sites within the eve promoter XX BS AACGGGTTAA; R05425; 1; 10;; p. BS ACTGGGTTAT; R05426; 1; 10;; p. BS GAAGGGATTA; R05427; 1; 10;; p. BS ACCGGGTTGC; R05428; 1; 10;; p. BS AACGGATTAA; R05429; 1; 10;; p. BS ATTGGGTTAT; R05430; 1; 10;; p. XX CC compiled sequences XX RN [1]; RE0001854. RX PUBMED: 2507923. RA Stanojevic D., Hoey T., Levine M. RT Sequence-specific DNA-binding activities of the gap proteins encoded by hunchback and Krueppel in Drosophila RL Nature 341:331-335 (1989). XX // AC M00022 XX ID I$HB_01 XX DT 03.12.1992 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Hb XX DE Hunchback XX BF T00395; Hb; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 1 5 8 2 S 02 6 8 2 0 M 03 9 3 4 0 A 04 4 3 1 8 N 05 13 1 0 2 A 06 16 0 0 0 A 07 16 0 0 0 A 08 14 0 2 0 A 09 15 1 0 0 A 10 9 2 2 3 A XX BA 16 Hb binding sites within the eve promoter XX BS GCCAAAAAAA; R05431; 1; 10;; p. BS CGCAAAAAAA; R05432; 1; 10;; p. BS TCATAAAAAC; R05433; 1; 10;; p. BS GCATTAAAAA; R05434; 1; 10;; p. BS TCGTAAAAAC; R05435; 1; 10;; p. BS GAATTAAAAA; R05436; 1; 10;; p. BS GGGAAAAAAA; R05437; 1; 10;; p. BS GCAGCAAAAA; R05438; 1; 10;; p. BS GAACAAAAAA; R05439; 1; 10;; p. BS GAACAAAGAA; R05440; 1; 10;; p. BS CCGTAAAGAG; R05441; 1; 10;; p. BS GCACAAAAAT; R05442; 1; 10;; p. BS AAATAAAAAA; R05443; 1; 10;; p. BS CAATAAAAAG; R05444; 1; 10;; p. BS CACTAAAAAT; R05445; 1; 10;; p. BS CCGAAAAACT; R05446; 1; 10;; p. XX CC compiled sequences XX RN [1]; RE0001854. RX PUBMED: 2507923. RA Stanojevic D., Hoey T., Levine M. RT Sequence-specific DNA-binding activities of the gap proteins encoded by hunchback and Krueppel in Drosophila RL Nature 341:331-335 (1989). XX // AC M00023 XX ID V$HOX13_01 XX DT 03.12.1992 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Hox-1.3 XX DE Hox-1.3 XX BF T00377; HOXA5; Species: mouse, Mus musculus. XX P0 A C G T 01 1 2 1 6 T 02 0 2 7 1 G 03 1 7 1 1 C 04 3 4 1 2 N 05 4 3 0 3 H 06 4 2 1 3 N 07 1 5 2 2 C 08 3 2 0 5 W 09 1 4 1 4 Y 10 1 9 0 0 C 11 1 6 1 2 C 12 1 5 0 4 Y 13 2 7 0 1 C 14 10 0 0 0 A 15 0 0 0 10 T 16 0 0 0 10 T 17 10 0 0 0 A 18 0 2 5 3 K 19 0 2 0 8 T 20 2 2 5 1 N 21 2 3 3 2 N 22 3 0 3 4 D 23 2 5 1 2 C 24 3 2 4 1 N 25 4 4 1 1 M 26 2 4 3 1 N 27 3 3 0 4 H 28 1 5 0 4 Y 29 1 7 1 1 C 30 4 2 2 2 N XX BA 10 Hox-1.3 in vitro binding sites of 10 different genes XX BS TGCCAACTCCCCCATTAGTGCACGAGACCT; R05447; 1; 30;; p. BS TGCCAACTCCCCTATTAGTGCACGAGACCT; R05448; 1; 30;; p. BS TCGAACTTTCCTAATTAGTCCTTCAATCCA; R05449; 1; 30;; p. BS GGCATGCATCTCAATTAGTCAGCAACCAGC; R05450; 1; 30;; p. BS TGCAAAGAACCCCATTAGCATGCCCCTCCA; R05451; 1; 30;; p. BS AGTCCACCCCCTCATTATCATATTGGCTTC; R05452; 1; 30;; p. BS TGCGCTATGCACCATTACTGGTGGCTCTCA; R05453; 1; 30;; p. BS TTCTCCGATCGTCATTATTTGTAACCATAG; R05454; 1; 30;; p. BS CCATTTTTTCCACATTACTGGGAGCCTCCG; R05455; 1; 30;; p. BS CGCCTTCCCATTCATTATTGATCATATTCA; R05456; 1; 30;; p. XX CC compiled sequences XX RN [1]; RE0000655. RX PUBMED: 2565857. RA Odenwald W. F., Garbern J., Arnheiter H., Tournier-Lasserve E., Lazzarini R. A. RT The HOX-1.3 homeo box protein is a sequence-specific DNA-binding phosphoprotein RL Genes Dev. 3:158-172 (1989). XX // AC M00024 XX ID V$E2F_01 XX DT 04.12.1992 (created); ewi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA E2F XX DE E2F XX BF T00221; E2F; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. XX P0 A C G T 01 1 0 0 4 T 02 2 1 0 2 W 03 1 2 2 0 S 04 0 1 4 0 G 05 0 5 0 0 C 06 0 0 5 0 G 07 0 4 1 0 C 08 0 0 5 0 G 09 5 0 0 0 A 10 5 0 0 0 A 11 5 0 0 0 A 12 5 0 0 0 A 13 1 2 0 2 Y 14 0 0 2 3 K 15 2 0 3 0 R XX BA 5 E2F binding sites in 3 E1A-inducible promoters XX BS TTGGCGGGAAAAAGA; R05457; 12; 15;; p. BS TAAGCGCGAAAACTA; R05458; 11; 15;; p. BS ACCGCGCGAAAATTG; R05459; 1; 15;; p. BS TTCCCGCGAAAATGG; R05460; 1; 15;; p. BS TAGGCGCGAAAACTG; R05461; 1; 15;; p. XX CC compiled sequences XX RN [1]; RE0000657. RX PUBMED: 2721961. RA Thalmeier K., Synovzik H., Mertz R., Winnacker E.-L., Lipp M. RT Nuclear factor E2F mediates basic transcription and trans-activation by E1a of the human MYC promoter RL Genes Dev. 3:527-536 (1989). XX // AC M00025 XX ID V$ELK1_02 XX DT 31.01.1994 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Elk-1 XX DE Elk-1 XX BF T00250; Elk-1; Species: human, Homo sapiens. XX P0 A C G T 01 4 12 5 10 N 02 5 12 8 6 N 03 11 9 6 5 N 04 12 3 11 5 N 05 6 20 3 2 C 06 5 23 2 1 C 07 0 0 31 0 G 08 0 0 31 0 G 09 31 0 0 0 A 10 27 0 0 4 A 11 9 4 17 1 R 12 2 8 5 16 T 13 8 9 7 7 N 14 8 11 6 6 N XX BA 31 selected sites XX BS ACAACAGGAACCAT; R05462; 34; 14;; p. BS TTATCAGGAACTGC; R05463; 31; 14;; p. BS CGAAACGGAAAGAC; R05464; 31; 14;; p. BS CCAACCGGAAGGTC; R05465; 31; 14;; p. BS TGGGCGGGAAGTAC; R05466; 31; 14;; p. BS CACTCCGGAAAGCC; R05467; 31; 14;; p. BS ACGGCCGGAATAGT; R05468; 30; 14;; p. BS CCTGGCGGAAGTCA; R05469; 30; 14;; p. BS GCAACTGGAAGCTA; R05470; 30; 14;; p. BS CTAACCGGAAATTA; R05471; 29; 14;; p. BS AATGCCGGAAATTG; R05472; 29; 14;; p. BS CCGGACGGATGTAC; R05473; 28; 14;; p. BS CAAACCGGAAATGA; R05474; 27; 14;; p. BS TCTCCCGGAAGTCG; R05475; 26; 14;; p. BS AGGGCCGGAAACCG; R05476; 24; 14;; p. BS TGGGGCGGAACCAG; R05477; 20; 14;; p. BS CTCCCCGGAAACGC; R05478; 20; 14;; p. BS TGCACAGGAAGCTT; R05479; 18; 14;; p. BS GCAACCGGATATAA; R05480; 18; 14;; p. BS GCTAGCGGATGTCA; R05481; 17; 14;; p. BS TACACCGGAAGCAC; R05482; 16; 14;; p. BS CTCGACGGAACGGG; R05483; 9; 14;; p. BS GCCTCCGGAAGCTC; R05484; 7; 14;; p. BS GTCAACGGAAGTCC; R05485; 31; 14;; n. BS TCATAAGGAAGTCA; R05486; 29; 14;; n. BS TAGGCCGGAAGTCT; R05487; 29; 14;; n. BS CGCGTCGGAAGTAC; R05488; 20; 14;; n. BS CCCTAAGGAAGGTT; R05489; 20; 14;; n. BS TGTCCGGGATGTCT; R05490; 16; 14;; n. BS TGAGCCGGAAATGA; R05491; 10; 14;; n. BS CTAATCGGAAGAGG; R05492; 8; 14;; n. XX CC single binding sites in variable distances to SRF-binding sites; distribution re-evaluated XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0000531. RX PUBMED: 1425594. RA Treisman R., Marais R., Wynne J. RT Spatial flexibility in ternary complexes between SRF and its accessory proteins RL EMBO J. 11:4631-4640 (1992). XX // AC M00026 XX ID V$RSRFC4_01 XX DT 31.01.1994 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA RSRFC4 XX DE related to serum response factor, C4 XX BF T01009; RSRFC4; Species: human, Homo sapiens. XX P0 A C G T 01 17 4 12 5 R 02 10 2 13 13 N 03 3 3 12 20 K 04 0 35 0 3 C 05 0 0 0 38 T 06 38 0 0 0 A 07 1 0 0 37 T 08 5 0 0 33 T 09 8 0 0 30 T 10 23 0 0 15 W 11 0 0 0 38 T 12 38 0 0 0 A 13 4 1 33 0 G 14 14 20 0 4 M 15 12 6 2 18 W 16 5 9 5 19 N XX BA 38 selected binding sites XX BS AGGCTATTTATAGAAC; R05493; 16; 16;; p. BS ATTCTATTTATAGCTT; R05494; 22; 16;; p. BS ATTCTATTTATAGCTT; R05495; 22; 16;; p. BS GTTCTATTTATAGATG; R05496; 18; 16;; p. BS GGTCTATTTATAGAAT; R05497; 17; 16;; p. BS AGGCTATTTATAGCTC; R05498; 15; 16;; p. BS ATCCTATTTATAGCTC; R05499; 15; 16;; p. BS CGTCTATTTATAGATT; R05500; 20; 16;; p. BS AGACTATTTATAGCAA; R05501; 13; 16;; p. BS AGTCTATTTATAGCCT; R05502; 22; 16;; p. BS GCACTATTTATAGTTC; R05503; 22; 16;; p. BS GGGCTATTTATAGAAA; R05504; 16; 16;; p. BS CAACTATTTATAACTC; R05505; 15; 16;; p. BS GTTCTATTTATAACTT; R05506; 14; 16;; p. BS GTGTTATTTATAGATT; R05507; 19; 16;; p. BS AATCTATTTTTAGTTT; R05508; 18; 16;; p. BS AATCTATTTTTAGCAG; R05509; 12; 16;; p. BS TTTCTATTTTTAGATC; R05510; 19; 16;; p. BS GGGCTATTTTTAGATT; R05511; 16; 16;; p. BS TAGCTATTTTTAGAAT; R05512; 12; 16;; p. BS GATCTATTTTTAGCCA; R05513; 16; 16;; p. BS ATGCTATTTTTAGACA; R05514; 22; 16;; p. BS CATCTATTTTTAGCCG; R05515; 21; 16;; p. BS TTGCTATTTTTAACTT; R05516; 18; 16;; p. BS CTCTTATTTTTAGCAC; R05517; 15; 16;; p. BS AGGCTATTAATAGTAT; R05518; 14; 16;; p. BS AGCCTATTAATAGCAA; R05519; 12; 16;; p. BS GGTCTATTAATAGCGT; R05520; 22; 16;; p. BS AATCTATTAATAGCCT; R05521; 14; 16;; p. BS ATTCTATTAATAGCTG; R05522; 16; 16;; p. BS TGGCTATTAATACTTT; R05523; 14; 16;; p. BS AATCTATTAATAACAT; R05524; 12; 16;; p. BS TGGCTATATTTAGAAG; R05525; 13; 16;; p. BS ATTCTATATTTAGATT; R05526; 17; 16;; p. BS GATTTATATTTAGACT; R05527; 20; 16;; p. BS GTTCTATATATAGCGC; R05528; 15; 16;; p. BS AATCTATTATTAGCTC; R05529; 16; 16;; p. BS GCGCTAAATTTAGAAT; R05530; 16; 16;; p. XX RN [1]; RE0000769. RX PUBMED: 1748287. RA Pollock R., Treisman R. RT Human SRF-related proteins: DNA-binding properties and potential regulatory targets RL Genes Dev. 5:2327-2341 (1991). XX // AC M00027 XX ID F$ABAA_01 XX DT 23.07.1994 (created); ewi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AbaA XX DE AbaA XX BF T01085; abaA; Species: Aspergillus nidulans, Emericella nidulans. XX P0 A C G T 01 3 10 2 7 Y 02 5 9 6 2 N 03 2 6 5 9 N 04 0 6 6 10 B 05 0 10 2 10 Y 06 1 8 1 12 Y 07 7 2 7 6 N 08 0 22 0 0 C 09 22 0 0 0 A 10 0 0 0 22 T 11 0 0 0 22 T 12 0 22 0 0 C 13 0 15 0 7 C 14 7 5 2 8 N 15 5 4 7 6 N 16 4 7 3 8 N 17 3 6 8 5 N 18 6 9 4 3 N 19 1 7 5 9 N XX BA 22 elements from 5 developmentally regulated genes XX BS CCTTTCACATTCCAGTCGT; R05531; 14; 19;; p. BS CCCTCAGCATTCCAAACAT; R05532; 14; 19;; p. BS TACGCTGCATTCCTCTGAG; R05533; 14; 19;; p. BS GCTTCCACATTCTCTTTCC; R05534; 14; 19;; p. BS GCTCTTACATTCTCTCTTC; R05535; 14; 19;; p. BS TTGTTCTCATTCTTGGGAG; R05536; 14; 19;; p. BS TAGCCTACATTCCTGGCCT; R05537; 14; 19;; p. BS CCTCCTCCATTCCGGCTCC; R05538; 14; 19;; p. BS CAACCTTCATTCTCTCTCT; R05539; 14; 19;; p. BS TGGTCTTCATTCTTTTGCT; R05540; 14; 19;; p. BS CCTCTTTCATTCCTTCACT; R05541; 14; 19;; p. BS AGCGTTGCATTCCGGCGGG; R05542; 14; 19;; p. BS TAGTCCGCATTCCTCTCCC; R05543; 14; 19;; p. BS CCCTTTGCATTCCAGTCGT; R05544; 14; 19;; p. BS TGCGCTGCATTCCATCTGC; R05545; 14; 19;; p. BS CCAGGTACATTCCAATCAA; R05546; 14; 19;; p. BS CGTTTCACATTCTTGCATT; R05547; 14; 19;; p. BS CAGTTCACATTCCTCGGAG; R05548; 14; 19;; p. BS TTCTTGCCATTCCAAAATG; R05549; 14; 19;; p. BS ACTGTCTCATTCCCCTGCT; R05550; 14; 19;; p. BS CGTGGTGCATTCCAAAGAC; R05551; 14; 19;; p. BS AGTCCCTCATTCTCAAGCC; R05552; 14; 19;; p. XX CC compiled sequences XX RN [1]; RE0001707. RX PUBMED: 8139553. RA Andrianopoulos A., Timberlake W. E. RT The Aspergillus nidulans abaA gene encodes a transcriptional activator that acts as a genetic switch to control development RL Mol. Cell. Biol. 14:2503-2515 (1994). XX // AC M00028 XX ID I$HSF_01 XX DT 18.10.1994 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (Drosophila) XX BF T00386; HSTF; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 31 14 4 1 A 02 0 0 50 0 G 03 48 2 0 0 A 04 43 1 5 1 A 05 23 1 14 12 N XX BA 50 functional genomic HSEs XX CC not included are sequences with more than 2 mismatches at positions 2 to 4; the matrix only describes the properties of the basic 5-bp unit of which three have to be present to constitute a minimal HSE XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00029 XX ID F$HSF_01 XX DT 18.10.1994 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (yeast) XX P0 A C G T 01 28 6 12 4 A 02 0 0 48 2 G 03 46 0 2 2 A 04 46 0 2 2 A 05 12 19 8 11 N XX BA 50 functional genomic HSEs XX CC the matrix only describes the properties of the basic 5-bp unit of which three have to be present to constitute a minimal HSE; not included are sequences with more than 2 mismatches at positions 2 to 4 XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00030 XX ID F$MATA1_01 XX DT 18.10.1994 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA MATa1 XX DE mating factor a1 XX BF T00488; MATa1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 0 1 1 12 T 02 0 0 14 0 G 03 14 0 0 0 A 04 0 0 0 14 T 05 0 0 14 0 G 06 1 2 0 11 T 07 10 0 3 1 A 08 6 2 4 2 N 09 5 4 1 4 N 10 2 1 1 10 T XX BA a1 half-sites of 14 hsg operators of 4 genes XX BS TGATGTACTT; R05553; 1; 10;; p. BS TGATGTAATC; R05554; 1; 10;; p. BS TGATGTGTAA; R05555; 1; 10;; p. BS TGATGCAGAA; R05556; 1; 10;; p. BS TGATGAAGCG; R05557; 1; 10;; p. BS TGATGTTAAT; R05558; 1; 10;; p. BS TGATGTAAAT; R05559; 1; 10;; p. BS TGATGTAACT; R05560; 1; 10;; p. BS TGATGCAGTT; R05561; 1; 10;; p. BS TGATGTGAAT; R05562; 1; 10;; p. BS CGATGTGCTT; R05563; 1; 10;; p. BS TGATGTATCT; R05564; 1; 10;; p. BS GGATGTAACT; R05565; 1; 10;; p. BS TGATGTAGGT; R05566; 1; 10;; p. XX CC compiled sequences XX RN [1]; RE0000546. RX PUBMED: 7907979. RA Goutte C., Johnson A. D. RT Recognition of a DNA operator by a dimer composed of two different homeodomain proteins RL EMBO J. 13:1434-1442 (1994). XX // AC M00031 XX ID F$MATALPHA2_01 XX DT 18.10.1994 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MATalpha2 XX DE mating factor alpha2 XX BF T00487; MATalpha2; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 2 2 3 7 N 02 2 10 1 1 C 03 8 1 4 1 A 04 1 1 0 12 T 05 0 0 13 1 G 06 0 1 0 13 T 07 5 3 2 4 N 08 7 2 2 3 A 09 7 1 0 6 W 10 6 3 1 4 N XX BA alpha2 half-sites of 14 hsg operators of 4 genes XX BS CAATGTAGAA; R05567; 1; 10;; p. BS AGATGTCACA; R05568; 1; 10;; p. BS GCTTGTTAAT; R05569; 1; 10;; p. BS TCATGTACTT; R05570; 1; 10;; p. BS GCGTTTAGAA; R05571; 1; 10;; p. BS TCATGTCCAC; R05572; 1; 10;; p. BS TCATGTTATT; R05573; 1; 10;; p. BS TCGTGTATTT; R05574; 1; 10;; p. BS ACATGTCTTC; R05575; 1; 10;; p. BS TCATGTATTC; R05576; 1; 10;; p. BS TAGAGTGAAA; R05577; 1; 10;; p. BS GCCTGCGATG; R05578; 1; 10;; p. BS TTATGTTAAA; R05579; 1; 10;; p. BS CCGCGTTAAA; R05580; 1; 10;; p. XX CC compiled sequences XX RN [1]; RE0000546. RX PUBMED: 7907979. RA Goutte C., Johnson A. D. RT Recognition of a DNA operator by a dimer composed of two different homeodomain proteins RL EMBO J. 13:1434-1442 (1994). XX // AC M00032 XX ID V$CETS1P54_01 XX DT 10.12.1994 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA c-Ets-1(p54) XX DE c-Ets-1(p54) XX BF T00111; c-Ets-1; Species: mouse, Mus musculus. XX P0 A C G T 01 7 2 3 3 N 02 1 14 0 0 C 03 5 9 0 1 M 04 0 0 15 0 G 05 0 0 15 0 G 06 15 0 0 0 A 07 8 2 0 5 W 08 4 1 10 0 G 09 1 6 0 8 Y 10 5 4 4 2 N XX BA 15 selected binding sites for bacterially expressed murine factor XX BS GCCGGAAGTG; R05581; 1; 10;; p. BS ACCGGAAGCA; R05582; 1; 10;; p. BS GCCGGATGTA; R05583; 1; 10;; p. BS ACCGGAAGCT; R05584; 1; 10;; p. BS ACCGGATATA; R05585; 1; 10;; p. BS CCCGGAAGTG; R05586; 1; 10;; p. BS ACAGGAAGTC; R05587; 1; 10;; p. BS GCCGGATGCA; R05588; 1; 10;; p. BS TCCGGAAGTA; R05589; 1; 10;; p. BS ACAGGAAGCG; R05590; 1; 10;; p. BS ACAGGATATG; R05591; 1; 10;; p. BS TCCGGAAACC; R05592; 1; 10;; p. BS ACAGGATATC; R05593; 1; 10;; p. BS CAAGGACGAC; R05594; 1; 10;; p. BS TCTGGACCCT; R05595; 1; 10;; p. XX CC Dissociation constants range between 0.038 nM and >3 nM XX RN [1]; RE0000800. RX PUBMED: 1592264. RA Nye J. A., Petersen J. M., Gunther C. V., Jonsen M. D., Graves B. J. RT Interaction of murine Ets-1 with GGA-binding sites establishes the Ets domain as a new DNA-binding motif RL Genes Dev. 6:975-990 (1992). XX // AC M00033 XX ID V$P300_01 XX DT 10.04.1995 (created); ewi. DT 10.12.2003 (updated); mkl. CO Copyright (C), Biobase GmbH. XX NA p300 XX DE p300 XX BF T01427; p300; Species: human, Homo sapiens. XX P0 A C G T 01 3 1 3 3 N 02 3 5 2 2 N 03 5 3 4 1 N 04 4 1 8 2 G 05 2 0 14 0 G 06 2 1 10 3 G 07 13 1 1 1 A 08 0 1 14 1 G 09 1 0 0 15 T 10 3 1 8 4 N 11 5 4 3 4 N 12 3 3 7 3 N 13 4 4 2 5 N 14 1 5 6 2 S XX BA 16 selected p300 binding oligonucleotides XX BS ACCCGGAGTGGG; R05596; 11; 14;; p. BS TAAAGGTGTACCCG; R05597; 7; 14;; p. BS GGAGTGAGAA; R05598; -4; 14;; p. BS ACGTGTAGTGACCT; R05599; 3; 14;; p. BS CGAGGTAGTAGGTC; R05600; 3; 14;; p. BS GGGGAGATAGCG; R05601; -2; 14;; p. BS GGGCGTTACAC; R05602; -3; 14;; p. BS TAAGGGGTTATTC; R05603; -1; 14;; p. BS GAGAGTGTTAT; R05604; -3; 14;; p. BS ACTGGTAGTTTAGC; R05605; 1; 14;; p. BS GGGTGAAGTCCGAG; R05606; 1; 14;; p. BS CCGGCAGTGTTTG; R05607; -1; 14;; p. BS GAGGGAAGTGGGCG; R05608; 5; 14;; p. BS TCCAAGAGTATGG; R05609; 8; 14;; p. BS TTAGGGACTGCATC; R05610; 5; 14;; p. BS GAAAGGATTGCATG; R05611; 2; 14;; p. XX RN [1]; RE0002909. RX PUBMED: 1534143. RA Rikitake Y., Moran E. RT DNA-binding properties of the E1A-associated 300-Kilodalton protein RL Mol. Cell. Biol. 12:2826-2836 (1992). XX // AC M00034 XX ID V$P53_01 XX DT 10.04.1995 (created); ewi. DT 14.01.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA p53 XX DE tumor suppressor p53 XX BF T01806; p53; Species: mouse, Mus musculus. BF T00671; p53; Species: human, Homo sapiens. XX P0 A C G T 01 4 0 13 0 G 02 5 0 12 0 G 03 15 0 2 0 A 04 0 17 0 0 C 05 17 0 0 0 A 06 0 0 0 17 T 07 0 0 17 0 G 08 0 13 0 4 C 09 0 17 0 0 C 10 0 17 0 0 C 11 0 0 17 0 G 12 0 0 17 0 G 13 2 0 15 0 G 14 0 17 0 0 C 15 17 0 0 0 A 16 0 0 0 17 T 17 0 0 17 0 G 18 0 2 0 15 T 19 0 13 0 4 C 20 0 7 2 7 Y XX BA 17 selected binding sequences XX BS GGACATGCCCGGGCATGTT; R05612; 17; 20;; p. BS GAACATGCCCGGGCATGTCT; R05613; 19; 20;; p. BS GGACATGCCCGGGCATGTCG; R05614; 5; 20;; p. BS GGGCATGCCCGGGCATGTCT; R05615; 19; 20;; p. BS GAACATGCCCGGGCATGTCC; R05616; 12; 20;; p. BS AAACATGCCCGGGCATGTTC; R05617; 3; 20;; p. BS GGACATGCCCGGGCATGTCT; R05618; 19; 20;; p. BS GGACATGCCCGGGCATGTCG; R05619; 15; 20;; p. BS AAACATGCCCGGGCATGCCC; R05620; 3; 20;; p. BS GGGCATGCCCGGGCATGTTC; R05621; 1; 20;; p. BS AGACATGCCCGGGCATGTCT; R05622; 19; 20;; p. BS GGACATGCCCGGGCATGTCT; R05623; 1; 20;; p. BS GGACATGCCCGGGCATGCCC; R05624; 1; 20;; p. BS GGACATGTCCGGACATGTTC; R05625; 18; 20;; p. BS GGACATGTCCGGACATGTCT; R05626; 19; 20;; p. BS AAACATGTCCGGGCATGTCC; R05627; 7; 20;; p. BS GGACATGTCCGGGCATGTCT; R05628; 19; 20;; p. XX CC six CASTing cycles with p53 (overexpressed in murine C2C12 cells) using random 35-mers XX RN [1]; RE0002910. RX PUBMED: 1588974. RA Funk W. D., Pak D. T., Karas R. H., Wright W. E., Shay J. W. RT A transcriptionally active DNA-binding site for human p53 protein complexes RL Mol. Cell. Biol. 12:2866-2871 (1992). XX // AC M00035 XX ID V$VMAF_01 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA v-Maf XX DE v-Maf XX BF T01430; v-Maf; Species: Avian musculoaponeurotic fibrosarcoma virus AS42. XX P0 A C G T 01 17 3 8 11 N 02 12 7 8 12 N 03 19 7 6 7 N 04 5 6 1 27 T 05 2 0 36 1 G 06 9 29 0 1 C 07 2 2 0 35 T 08 1 2 33 3 G 09 37 0 2 0 A 10 0 34 0 5 C 11 5 5 6 23 T 12 8 21 7 3 C 13 23 1 7 8 A 14 1 0 36 2 G 15 4 29 4 2 C 16 24 5 7 3 A 17 7 18 6 8 N 18 12 11 9 7 N 19 12 10 9 8 N XX BA 39 selected v-Maf binding sites of TRE-type XX CC PCR amplification of random eikosamers with fixed flanks binding to recombinant bZIP domain of v-Maf fused to maltose-binding protein and expressed in E. coli XX RN [1]; RE0002917. RX PUBMED: 8264639. RA Kataoka K., Noda M., Nishizawa M. RT Maf nuclear oncoprotein recognizes sequences related to an AP-1 site and forms heterodimers with both Fos and Jun RL Mol. Cell. Biol. 14:700-712 (1994). XX // AC M00036 XX ID V$VJUN_01 XX DT 12.04.1995 (created); ewi. DT 17.11.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA v-Jun XX DE v-Jun XX BF T00893; v-Jun; Species: Avian sarcoma virus (strain 17). XX P0 A C G T 01 6 8 5 5 N 02 2 11 3 8 Y 03 6 0 15 3 G 04 20 0 4 0 A 05 0 0 0 24 T 06 0 0 24 0 G 07 24 0 0 0 A 08 0 24 0 0 C 09 0 0 24 0 G 10 0 0 0 24 T 11 0 24 0 0 C 12 24 0 0 0 A 13 0 2 1 21 T 14 5 8 4 7 N 15 3 13 4 4 C 16 5 10 0 9 Y XX BA 24 selected binding sites XX BS GTGATGACGTCACCCA; R05629; 9; 16;; p. BS CCAATGACGTCATCCC; R05630; 8; 16;; p. BS GTGGTGACGTCACCCC; R05631; 8; 16;; p. BS CTAATGACGTCATCCC; R05632; 8; 16;; p. BS ACGGTGACGTCATCCC; R05633; 8; 16;; p. BS AGGATGACGTCATCCC; R05634; 8; 16;; p. BS GCTATGACGTCATTCC; R05635; 7; 16;; p. BS CCGATGACGTCATTCC; R05636; 7; 16;; p. BS ACGATGACGTCATACC; R05637; 7; 16;; p. BS TCGATGACGTCATTAA; R05638; 5; 16;; p. BS GGGATGACGTCATGCT; R05639; 5; 16;; p. BS AGTATGACGTCATTCT; R05640; 5; 16;; p. BS GCGGTGACGTCATATT; R05641; 4; 16;; p. BS TAGATGACGTCATTGA; R05642; 4; 16;; p. BS CTAATGACGTCATTTT; R05643; 3; 16;; p. BS TCAGTGACGTCATTGT; R05644; 3; 16;; p. BS ATAATGACGTCAGAAA; R05645; 3; 16;; p. BS TTGATGACGTCATGCA; R05646; 2; 16;; p. BS ATGATGACGTCATGTT; R05647; 2; 16;; p. BS TCGATGACGTCATGGC; R05648; 2; 16;; p. BS CCGATGACGTCATAGC; R05649; 1; 16;; p. BS CTAATGACGTCATCTT; R05650; 1; 16;; p. BS CAGATGACGTCATCCT; R05651; 1; 16;; p. BS CCTATGACGTCATAAT; R05652; 12; 16;; p. XX CC PCR amplification of random eikosamers with fixed flanks binding to recombinant bZIP domain of v-Jun fused to maltose-binding protein and expressed in E. coli XX RN [1]; RE0002917. RX PUBMED: 8264639. RA Kataoka K., Noda M., Nishizawa M. RT Maf nuclear oncoprotein recognizes sequences related to an AP-1 site and forms heterodimers with both Fos and Jun RL Mol. Cell. Biol. 14:700-712 (1994). XX // AC M00037 XX ID V$NFE2_01 XX DT 12.04.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA NF-E2 XX DE NF-E2 p45 XX BF T00557; NF-E2; Species: mouse, Mus musculus. BF T00558; NF-E2; Species: human, Homo sapiens. BF T01141; NF-E2; Species: chick, Gallus gallus. BF T01440; NF-E2 p45; Species: human, Homo sapiens. BF T01441; NF-E2 p45; Species: mouse, Mus musculus. XX P0 A C G T 01 2 2 0 5 T 02 2 0 7 0 G 03 1 8 0 0 C 04 0 0 0 9 T 05 0 0 9 0 G 06 9 0 0 0 A 07 0 3 6 0 G 08 0 0 1 8 T 09 0 8 0 1 C 10 8 1 0 0 A 11 1 4 0 4 Y XX BA 9 synthetic binding sites XX BS TGCTGAGTCAC; R05653; 12; 11;; p. BS CACTGAGTCAT; R05654; 7; 11;; p. BS TGCTGAGTCAT; R05655; 9; 11;; p. BS AGCTGACTCAT; R05656; 12; 11;; p. BS TGATGAGTCAC; R05657; 12; 11;; p. BS CACTGAGTCAT; R05658; 12; 11;; p. BS TGCTGACTCAC; R05659; 12; 11;; p. BS AGCTGAGTCAC; R05660; 12; 11;; p. BS TGCTGACGTCA; R05661; 12; 11;; p. XX CC compiled oligonucleotides which compete in gel shift experiments for binding to purified NF-E2 (from mouse MEL cells) XX RN [1]; RE0002919. RX PUBMED: 8469283. RA Andrews N. C., Erdjument-Bromage H., Davidson M. B., Tempst P., Orkin S. H. RT Erythroid transcription factor NF-E2 is a haematopoietic-specific basic-leucine zipper protein RL Nature 362:722-728 (1993). XX // AC M00038 XX ID F$GCN4_01 XX DT 12.04.1995 (created); ewi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GCN4 XX DE GCN4 XX BF T00321; GCN4; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 4 6 2 2 N 02 2 7 5 1 S 03 7 6 2 3 N 04 2 7 9 2 S 05 3 6 6 8 N 06 5 4 10 6 N 07 5 11 7 4 N 08 4 12 9 5 N 09 6 9 11 11 N 10 19 6 15 2 R 11 0 0 0 43 T 12 0 0 43 0 G 13 43 0 0 0 A 14 0 43 0 0 C 15 2 0 0 41 T 16 1 42 0 0 C 17 43 0 0 0 A 18 1 11 5 26 T 19 12 16 2 8 N 20 4 14 13 3 S 21 12 10 4 8 N 22 6 9 11 7 N 23 7 10 4 10 N 24 4 8 11 5 N 25 5 10 6 6 N 26 8 7 3 7 N 27 6 7 4 6 N XX BA 43 selected GCN4-binding sites XX CC oligonucleotides were affinity-selected on a GCN4-column containing bacterially expressed factor XX RN [1]; RE0002916. RX PUBMED: 2674675. RA Oliphant A. R., Brandl C. J., Struhl K. RT Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein RL Mol. Cell. Biol. 9:2944-2949 (1989). XX // AC M00039 XX ID V$CREB_01 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CREB XX DE cAMP-responsive element binding protein XX BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T00166; deltaCREB; Species: human, Homo sapiens. BF T00165; deltaCREB; Species: rat, Rattus norvegicus. BF T01311; deltaCREB; Species: mouse, Mus musculus. XX P0 A C G T 01 0 0 0 29 T 02 0 0 28 1 G 03 29 0 0 0 A 04 0 29 0 0 C 05 0 1 28 0 G 06 0 1 1 27 T 07 12 16 1 0 M 08 17 1 4 7 A XX BA 29 selected binding oligonucleotides XX CC sequences were selected by CASTing technique using deltaCREB translated in vitro in reticulocyte lysate and binding as homodimer XX RN [1]; RE0002915. RX PUBMED: 8190638. RA Benbrook D. M., Jones N. C. RT Different binding specificities and transactivation of variant CRE's by CREB complexes RL Nucleic Acids Res. 22:1463-1469 (1994). XX // AC M00040 XX ID V$CREBP1_01 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CRE-BP1 XX DE cAMP-responsive element binding protein 1 XX BF T00167; ATF-2; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 0 47 T 02 0 0 8 39 T 03 47 0 0 0 A 04 0 47 0 0 C 05 4 0 43 0 G 06 0 0 0 47 T 07 39 7 0 1 A 08 45 2 0 0 A XX BA 47 selected binding sequences XX CC sequences were selected by CASTing technique using CRE-BP1 XX RN [1]; RE0002915. RX PUBMED: 8190638. RA Benbrook D. M., Jones N. C. RT Different binding specificities and transactivation of variant CRE's by CREB complexes RL Nucleic Acids Res. 22:1463-1469 (1994). XX // AC M00041 XX ID V$CREBP1CJUN_01 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CRE-BP1:c-Jun XX DE CRE-binding protein 1:c-Jun heterodimer XX BF T00167; ATF-2; Species: human, Homo sapiens. BF T00134; c-Jun; Species: chick, Gallus gallus. BF T00131; c-Jun; Species: mouse, Mus musculus. BF T00132; c-Jun; Species: rat, Rattus norvegicus. BF T00133; c-Jun; Species: human, Homo sapiens. XX P0 A C G T 01 0 1 0 42 T 02 2 0 41 0 G 03 43 0 0 0 A 04 0 43 0 0 C 05 2 1 40 0 G 06 0 0 0 43 T 07 0 20 3 20 Y 08 40 1 0 2 A XX BA 43 selected binding sequences XX CC sequences were selected by CASTing technique using co-translated CRE-BP1 and c-Jun binding to DNA as heterodimers XX RN [1]; RE0002915. RX PUBMED: 8190638. RA Benbrook D. M., Jones N. C. RT Different binding specificities and transactivation of variant CRE's by CREB complexes RL Nucleic Acids Res. 22:1463-1469 (1994). XX // AC M00042 XX ID V$SOX5_01 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Sox-5 XX DE Sox-5 XX BF T01429; Sox5; Species: mouse, Mus musculus. XX P0 A C G T 01 4 6 3 9 N 02 7 4 3 8 N 03 21 0 1 1 A 04 22 0 1 0 A 05 0 22 0 1 C 06 23 0 0 0 A 07 22 1 0 0 A 08 0 0 0 23 T 09 10 3 6 4 N 10 5 7 6 5 N XX BA 23 selected binding sequences XX BS CTAACAATGT; R05705; 11; 10;; p. BS TCAACAATAG; R05706; 18; 10;; p. BS TAAACAATTC; R05707; 15; 10;; p. BS AAAACAATTC; R05708; 14; 10;; p. BS GTAACAATCA; R05709; 11; 10;; p. BS TAAACAATTT; R05710; 8; 10;; p. BS CAAACAATAC; R05711; 11; 10;; p. BS TCAACAATAA; R05712; 19; 10;; p. BS AACAATGG; R05713; -2; 10;; p. BS CAAACAATAG; R05714; 13; 10;; p. BS CTAACAATAC; R05715; 11; 10;; p. BS CTAACAATGA; R05716; 30; 10;; p. BS AGAACAATAC; R05717; 22; 10;; p. BS ATAACAATAG; R05718; 27; 10;; p. BS TCAACAATAG; R05719; 18; 10;; p. BS CTAACAATGT; R05720; 11; 10;; p. BS ATAACAATCT; R05721; 26; 10;; p. BS GCAACAATGA; R05722; 30; 10;; p. BS TTGACAATAA; R05723; 12; 10;; p. BS TGAATAATAT; R05724; 18; 10;; p. BS GAAACACTCG; R05725; 11; 10;; p. BS TATACAATTC; R05726; 12; 10;; p. BS TGAGCAATGC; R05727; 29; 10;; p. XX CC oligonucleotides binding to bacterially expressed GST-Sox-5 fusion protein were selected by 5 selection/amplification rounds XX RN [1]; RE0002914. RX PUBMED: 1396566. RA Denny P., Swift S., Connor F., Ashworth A. RT An SRY-related gene expressed during spermatogenesis in the mouse encodes a sequence-specific DNA-binding protein RL EMBO J. 11:3705-3712 (1992). XX // AC M00043 XX ID I$DL_01 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA dl XX DE dorsal XX BF T00196; Dl; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0 2 18 2 G 02 0 0 22 0 G 03 0 0 22 0 G 04 4 2 0 16 T 05 4 1 0 17 T 06 1 0 0 12 T 07 0 0 0 22 T 08 0 0 0 22 T 09 1 21 0 0 C 10 0 22 0 0 C 11 5 8 7 2 N XX BA 22 selected binding sequences XX BS GGGTAATTCCC; R05728; 3; 11;; p. BS GGGTATTTCCC; R05729; 1; 11;; p. BS GGGTT TTCCG; R05730; 2; 11; 7; p. BS GGGAT TTCCA; R05731; 3; 11; 8; p. BS GGGAA TTCCC; R05732; 2; 11; 7; p. BS GGGAC TTCCC; R05733; 3; 11; 8; p. BS GGGAT TTCCG; R05734; 3; 11; 8; p. BS GGGTT TTCCA; R05735; 1; 11; 6; p. BS GGGTTTTTCCA; R05736; 2; 11;; p. BS GGGTTTTTCCA; R05737; 2; 11;; p. BS GGGTTTTTCCG; R05738; 2; 11;; p. BS GGGTTTTTCCG; R05739; 3; 11;; p. BS GGGTTTTTCCT; R05740; 4; 11;; p. BS CGGTTTTTCCG; R05741; 1; 11;; p. BS GGGCTTTTCCG; R05742; 3; 11;; p. BS TGGTT TTCCC; R05743; 2; 11; 7; p. BS GGGCA TTCCC; R05744; 5; 11; 10; p. BS GGGTTTTTCCT; R05745; 5; 11;; p. BS CGGTTTTTCCA; R05746; 1; 11;; p. BS GGGTTTTTCCC; R05747; 4; 11;; p. BS GGGTTTTTACG; R05748; 2; 11;; p. BS TGGTT TTCCC; R05749; 4; 11; 9; p. XX CC SAAB analysis of oligonucleotides binding to bacterially expressed dorsal (dl) protein; alignment produces many gaps in position 6 XX RN [1]; RE0002913. RX PUBMED: 1582412. RA Pan D., Courey A. J. RT The same dorsal binding site mediates both activation and repression in a context-dependent manner RL EMBO J. 11:1837-1842 (1992). XX // AC M00044 XX ID I$SN_02 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Sn XX DE Snail XX BF T00751; Sn; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 5 2 1 1 A 02 1 4 3 1 S 03 2 5 1 1 C 04 8 0 1 0 A 05 1 5 2 1 C 06 0 5 2 2 C 07 0 0 0 9 T 08 0 0 9 0 G 09 2 2 0 5 T 10 0 0 0 9 T 11 2 1 2 4 N 12 3 2 3 1 N 13 1 5 2 1 C 14 6 1 0 2 A XX BA 9 binding sites from Drosophila sim gene XX BS CCCACCTGATAGGA; R05750; 1; 14;; p. BS CCTACCTGTTTCCA; R05751; 1; 14;; p. BS TCAACCTGTTGAAT; R05752; 1; 14;; p. BS GCAGGTTGTTTTCC; R05753; 1; 14;; p. BS AGGATCTGTTACCT; R05754; 1; 14;; p. BS ATCACCTGTTTGCA; R05755; 1; 14;; p. BS AACAGGTGATTGCA; R05756; 1; 14;; p. BS AGCACTTGCTCATA; R05757; 1; 14;; p. BS AGCAAGTGCTGAGA; R05758; 1; 14;; p. XX CC bacterially expressed Snail (Sna, Sn) protein XX RN [1]; RE0002912. RX PUBMED: 1533042. RA Kasai Y., Nambu J. R., Lieberman P. M., Crews S. T. RT Dorsal-ventral patterning in Drosophila: DNA binding of snail protein to the single-minded gene RL Proc. Natl. Acad. Sci. USA 89:3414-3418 (1992). XX // AC M00045 XX ID V$E4BP4_01 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA E4BP4 XX DE E4BP4 XX BF T01428; E4BP4; Species: human, Homo sapiens. XX P0 A C G T 01 6 9 3 5 N 02 9 3 11 0 R 03 1 0 0 22 T 04 0 0 2 21 T 05 23 0 0 0 A 06 0 8 0 15 Y 07 1 0 22 0 G 08 0 0 0 23 T 09 23 0 0 0 A 10 23 0 0 0 A 11 0 11 4 8 Y 12 7 4 8 4 N XX BA 23 selected binding sequences XX BS CGTTATGTAACT; R05759; 12; 12;; p. BS GATTATGTAATA; R05760; 21; 12;; p. BS CATTATGTAACG; R05761; 29; 12;; p. BS TGTTATGTAATG; R05762; 13; 12;; p. BS ACTTATGTAATC; R05763; 14; 12;; p. BS CATTATGTAACG; R05764; 18; 12;; p. BS CGTTATGTAACT; R05765; 10; 12;; p. BS CGTTATGTAATC; R05766; 10; 12;; p. BS ACTTATGTAACA; R05767; 25; 12;; p. BS TATTATGTAAGA; R05768; 13; 12;; p. BS GATTATGTAAGT; R05769; 11; 12;; p. BS AATTATGTAACG; R05770; 22; 12;; p. BS CGTTATGTAACG; R05771; 10; 12;; p. BS AATTACGTAAGA; R05772; 22; 12;; p. BS GATTACGTAACG; R05773; 24; 12;; p. BS CGTTACGTAAGC; R05774; 22; 12;; p. BS TGTTACGTAATT; R05775; 12; 12;; p. BS CCTTACGTAACA; R05776; 22; 12;; p. BS AGTTACGTAACG; R05777; 23; 12;; p. BS TGTGACGTAATG; R05778; 16; 12;; p. BS TATGATGTAATA; R05779; 21; 12;; p. BS CGTTATATAACA; R05780; 25; 12;; p. BS AGATACGTAATC; R05781; 15; 12;; p. XX CC high-affinity binding sites for in vitro translated E4BP4 XX RN [1]; RE0002911. RX PUBMED: 1620116. RA Cowell I. G., Skinner A., Hurst H. C. RT Transcriptional repression by a novel member of the bZIP family of transcription factors RL Mol. Cell. Biol. 12:3070-3077 (1992). XX // AC M00046 XX ID F$GCR1_01 XX DT 12.04.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA GCR1 XX DE GCR1 XX BF T00322; GCR1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 2 0 4 0 G 02 1 0 4 1 G 03 0 6 0 0 C 04 1 0 0 5 T 05 0 0 0 6 T 06 0 6 0 0 C 07 0 6 0 0 C 08 3 0 0 3 W 09 1 4 1 0 C XX BA 6 genomic binding sites from 5 genes XX BS AGCTTCCTC; R05782; 14; 9;; p. BS GGCATCCAG; R05783; 13; 9;; p. BS GTCTTCCTA; R05784; 14; 9;; p. BS AGCTTCCAC; R05785; 14; 9;; p. BS GGCTTCCAC; R05786; 14; 9;; p. BS GACTTCCTC; R05787; 14; 9;; p. XX CC proven by gel shift assays XX RN [1]; RE0002918. RX PUBMED: 1588965. RA Huie M. A., Scott E. W., Drazinic C. M., Lopez M. C., Hornstra I. K., Yang T. P., Baker H. V. RT Characterization of the DNA-binding activity of GCR1: In vivo evidence for two GCR1-binding sites in the upstream activating sequence of TPI of Saccharomyces cerevisiae RL Mol. Cell. Biol. 12:2690-2700 (1992). XX // AC M00047 XX ID F$QA1F_01 XX DT 12.04.1995 (created); ewi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA qa-1F XX DE qa-1F XX BF T00709; qa-1F; Species: Neurospora crassa. XX P0 A C G T 01 3 7 0 3 C 02 2 6 1 4 Y 03 0 1 12 0 G 04 0 0 13 0 G 05 4 3 4 2 N 06 1 0 1 11 T 07 10 1 2 0 A 08 12 0 0 1 A 09 5 0 4 4 D 10 1 5 2 5 Y 11 5 2 5 1 R 12 2 6 0 5 Y 13 0 0 0 13 T 14 1 3 0 9 T 15 11 1 0 1 A 16 3 1 0 9 T 17 1 10 1 1 C 18 2 10 1 0 C 19 1 3 5 4 N 20 0 5 5 3 S XX BA 13 binding sites from 5 genes XX CC identified by footprinting XX RN [1]; RE0001334. RX PUBMED: 2951591. RA Baum J. A., Geever R., Giles N. H. RT Expression of qa-1F activator protein: identification of upstream binding sites in the qa gene cluster and localization of the DNA-binding domain RL Mol. Cell. Biol. 7:1256-1266 (1987). XX // AC M00048 XX ID F$ADR1_01 XX DT 12.04.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA ADR1 XX DE alcohol dehydrogenase gene regulator 1 XX BF T00011; ADR1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 3 5 2 6 N 02 0 0 16 0 G 03 0 0 16 0 G 04 6 0 10 0 R 05 0 0 15 0 G 06 0 1 3 4 K XX BA 16 selected binding sequences XX CC random octameric oligonucleotides with fixed flanks bound to bacterially synthesized ADR1 XX RN [1]; RE0002920. RX PUBMED: 8196627. RA Cheng C., Kacherovsky N., Dombek K. M., Camier S., Thukral S. K., Rhim E., Young E. T. RT Identification of potential target genes for Adr1p through characterization of essential nucleotides in UAS1 RL Mol. Cell. Biol. 14:3842-3852 (1994). XX // AC M00049 XX ID F$GAL4_01 XX DT 13.04.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA GAL4 XX DE GAL4 XX BF T00302; GAL4; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 1 5 3 2 N 02 5 2 1 3 N 03 3 2 1 5 N 04 1 10 0 0 C 05 0 0 10 1 G 06 0 1 10 0 G 07 4 3 3 1 N 08 1 3 4 3 N 09 2 4 4 1 N 10 7 0 2 2 A 11 1 8 2 0 C 12 4 1 0 6 W 13 1 3 5 2 N 14 0 2 1 8 T 15 1 6 2 2 C 16 1 5 4 1 S 17 2 1 1 7 T 18 0 10 1 0 C 19 0 11 0 0 C 20 0 0 11 0 G 21 8 0 0 3 A 22 7 0 4 0 R 23 2 6 3 0 C XX BA 11 genomic binding sites from 6 genes XX CC compiled sequences XX RN [1]; RE0000345. RX PUBMED: 3011415. RA Bram R. J., Lue N. F., Kornberg R. D. RT A GAL family of upstream activating sequences in yeast: roles in both induction and repression of transcription RL EMBO J. 5:603-608 (1986). XX // AC M00050 XX ID V$E2F_02 XX DT 13.04.1995 (created); ewi. DT 19.02.2001 (updated); sth. CO Copyright (C), Biobase GmbH. XX NA E2F XX DE E2F XX BF T00221; E2F; Species: human, Homo sapiens. BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. BF T01544; E2F-2; Species: human, Homo sapiens. BF T01545; E2F-3a; Species: human, Homo sapiens. BF T01546; E2F-4; Species: human, Homo sapiens. BF T01607; E2F-5; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 0 12 T 02 0 0 0 12 T 03 0 0 0 12 T 04 0 6 6 0 S 05 0 2 10 0 G 06 0 12 0 0 C 07 0 0 12 0 G 08 0 11 1 0 C XX BA 12 binding sites from 7 cellular and 1 viral genes XX BS TTTCGCGC; R05828; 1; 8;; p. BS TTTGGCGC; R05829; 1; 8;; p. BS TTTGCCGC; R05830; 1; 8;; p. BS TTTGGCGC; R05831; 1; 8;; p. BS TTTGGCGG; R05832; 1; 8;; p. BS TTTCCCGC; R05833; 1; 8;; p. BS TTTCGCGC; R05834; 1; 8;; p. BS TTTCGCGC; R05835; 1; 8;; p. BS TTTGGCGC; R05836; 1; 8;; p. BS TTTGGCGC; R05837; 1; 8;; p. BS TTTCGCGC; R05838; 1; 8;; p. BS TTTCGCGC; R05839; 1; 8;; p. XX CC compiled sequences XX RN [1]; RE0002921. RX PUBMED: 1411535. RA Nevins R. RT E2F: A link between the Rb tumor suppressor protein and viral oncoproteins RL Science 258:424-429 (1992). XX // AC M00051 XX ID V$NFKAPPAB50_01_M00051 XX DT 13.04.1995 (created); hiwi. DT 04.12.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA NF-kappaB (p50) XX DE NF-kappaB (p50) XX BF T00593; p50; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 18 0 G 02 0 0 18 0 G 03 0 0 18 0 G 04 2 0 16 0 G 05 16 1 0 1 A 06 0 0 3 15 T 07 0 7 1 10 Y 08 0 16 0 2 C 09 0 18 0 0 C 10 0 17 1 0 C XX BA 18 selected binding sequences XX BS GGGGATTCCC; R05840; 12; 10;; p. BS GGGGTTTTCG; R05841; 14; 10;; p. BS GGGGATTCCC; R05842; 13; 10;; p. BS GGGGATTCCC; R05843; 12; 10;; p. BS GGGGATCCCC; R05844; 9; 10;; p. BS GGGGAGCCCC; R05845; 13; 10;; p. BS GGGGATCCCC; R05846; 8; 10;; p. BS GGGAAGCCCC; R05847; 7; 10;; p. BS GGGGATTCCC; R05848; 6; 10;; p. BS GGGGATTCCC; R05849; 6; 10;; p. BS GGGGATTCCC; R05850; 8; 10;; p. BS GGGGATCCCC; R05851; 7; 10;; p. BS GGGACTTTCC; R05852; 8; 10;; p. BS GGGGAGGCCC; R05853; 6; 10;; p. BS GGGGATTCCC; R05854; 12; 10;; p. BS GGGGATCCCC; R05855; 10; 10;; p. BS GGGGATTCCC; R05856; 6; 10;; p. BS GGGGATCCCC; R05857; 7; 10;; p. XX CC oligonucleotides binding to bacterially expressed NF-kappaB (p50) were selected (gel shift) and amplified (PCR) in 3 cycles XX RN [1]; RE0002922. RX PUBMED: 1406630. RA Kunsch C., Ruben S. M., Rosen C. A. RT Selection of optimal kappaB/Rel DNA-binding motifs: interaction of both subunits of NF-kappaB with DNA is required for transcriptional activation RL Mol. Cell. Biol. 12:4412-4421 (1992). XX // AC M00052 XX ID V$NFKAPPAB65_01_M00052 XX DT 13.04.1995 (created); hiwi. DT 04.12.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA NF-kappaB (p65) XX DE NF-kappaB (p65) XX BF T00594; RelA; Species: human, Homo sapiens. BF T00595; RelA; Species: mouse, Mus musculus. XX P0 A C G T 01 0 4 10 4 G 02 0 0 18 0 G 03 0 0 18 0 G 04 11 0 7 0 R 05 10 3 3 2 A 06 2 0 0 16 T 07 0 0 0 18 T 08 0 3 0 15 T 09 0 18 0 0 C 10 0 18 0 0 C XX BA 18 selected binding sequences XX BS GGGGAATTCC; R05858; 10; 10;; p. BS CGGAATTTCC; R05859; 8; 10;; p. BS GGGGGATTCC; R05860; 12; 10;; p. BS GGGGATTTCC; R05861; 12; 10;; p. BS CGGAGTTTCC; R05862; 12; 10;; p. BS CGGACTTTCC; R05863; 12; 10;; p. BS GGGAATTTCC; R05864; 8; 10;; p. BS CGGACTTTCC; R05865; 13; 10;; p. BS TGGAATTTCC; R05866; 13; 10;; p. BS TGGAATTTCC; R05867; 6; 10;; p. BS GGGAATTCCC; R05868; 6; 10;; p. BS GGGAATTTCC; R05869; 6; 10;; p. BS GGGAATTTCC; R05870; 7; 10;; p. BS GGGGATTCCC; R05871; 12; 10;; p. BS GGGACTTTCC; R05872; 12; 10;; p. BS TGGGGTTTCC; R05873; 13; 10;; p. BS GGGGTTTTCC; R05874; 11; 10;; p. BS TGGGTTTCCC; R05875; 13; 10;; p. XX CC oligonucleotides binding to bacterially expressed NF-kappaB (p65) were selected (gel shift) and amplified (PCR) in 3 cycles XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002922. RX PUBMED: 1406630. RA Kunsch C., Ruben S. M., Rosen C. A. RT Selection of optimal kappaB/Rel DNA-binding motifs: interaction of both subunits of NF-kappaB with DNA is required for transcriptional activation RL Mol. Cell. Biol. 12:4412-4421 (1992). XX // AC M00053 XX ID V$CREL_01_M00053 XX DT 13.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA c-Rel XX DE c-Rel XX BF T00168; c-Rel; Species: human, Homo sapiens. BF T00169; c-Rel; Species: mouse, Mus musculus. BF T01154; c-Rel; Species: chick, Gallus gallus. XX P0 A C G T 01 0 5 8 4 S 02 0 0 16 1 G 03 1 0 15 1 G 04 5 1 9 2 R 05 6 5 3 3 N 06 5 1 1 10 T 07 1 0 0 16 T 08 2 0 0 15 T 09 0 15 0 2 C 10 1 16 0 0 C XX BA 17 selected binding sequences XX BS GGGAACTTTC; R05876; 13; 10;; p. BS GGGAATTTCC; R05877; 11; 10;; p. BS GGGGTTTTTC; R05878; 13; 10;; p. BS TGGTCTTTCC; R05879; 11; 10;; p. BS TGGGCTTTCC; R05880; 11; 10;; p. BS GGGGGTTTCC; R05881; 13; 10;; p. BS CGGGAATTCC; R05882; 13; 10;; p. BS GGGGTATTCC; R05883; 11; 10;; p. BS GGGAAGTACA; R05884; 6; 10;; p. BS CGGCATTTCC; R05885; 8; 10;; p. BS CTAAAAAACC; R05886; 10; 10;; p. BS CGTGCATTCC; R05887; 7; 10;; p. BS GGGGCTTTCC; R05888; 7; 10;; p. BS CGGGGTTTCC; R05889; 11; 10;; p. BS TGGGCATTCC; R05890; 13; 10;; p. BS GGGTTTTTCC; R05891; 8; 10;; p. BS TGGAGTTTCC; R05892; 13; 10;; p. XX CC oligonucleotides binding to bacterially expressed c-Rel were selected (gel shift) and amplified (PCR) in 3 cycles XX RN [1]; RE0002922. RX PUBMED: 1406630. RA Kunsch C., Ruben S. M., Rosen C. A. RT Selection of optimal kappaB/Rel DNA-binding motifs: interaction of both subunits of NF-kappaB with DNA is required for transcriptional activation RL Mol. Cell. Biol. 12:4412-4421 (1992). XX // AC M00054 XX ID V$NFKAPPAB_01_M00054 XX DT 13.04.1995 (created); hiwi. DT 30.07.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA NF-kappaB XX DE NF-kappaB XX BF T00587; NF-kappaB; Species: rat, Rattus norvegicus. BF T00588; NF-kappaB; Species: mouse, Mus musculus. BF T00590; NF-kappaB; Species: human, Homo sapiens. BF T00593; p50; Species: human, Homo sapiens. BF T00594; RelA; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 40 0 G 02 0 0 40 0 G 03 1 0 39 0 G 04 27 0 13 0 A 05 21 13 1 5 M 06 8 1 3 28 T 07 1 2 2 35 T 08 2 18 0 20 Y 09 3 36 0 1 C 10 0 38 0 2 C XX BA 40 binding sites from 30 genes (26 cellular genes and 4 viral genomes) XX BS GGGACTTTCC; R05893; 1; 10;; p. BS GGGGATTTCC; R05894; 1; 10;; p. BS GGGGTTTCCC; R05895; 1; 10;; p. BS GGGAATCTCC; R05896; 1; 10;; p. BS GGGAGATTCC; R05897; 1; 10;; p. BS GGGGATTCCC; R05898; 1; 10;; p. BS GGGGAAGCCC; R05899; 1; 10;; p. BS GGGACTTCCC; R05900; 1; 10;; p. BS GGGAATTTCC; R05901; 1; 10;; p. BS GGGACTTTCC; R05902; 1; 10;; p. BS GGGGATTTCC; R05903; 1; 10;; p. BS GGGATTTCAC; R05904; 1; 10;; p. BS GGGATTTTCC; R05905; 1; 10;; p. BS GGAATTTCCT; R05906; 1; 10;; p. BS GGGAACTACC; R05907; 1; 10;; p. BS GGGGAATCTC; R05908; 1; 10;; p. BS GGGAAATCAC; R05909; 1; 10;; p. BS GGGGCTTTCC; R05910; 1; 10;; p. BS GGGAATTCAC; R05911; 1; 10;; p. BS GGGGAATCCT; R05912; 1; 10;; p. BS GGGGCTGCCC; R05913; 1; 10;; p. BS GGGAATTTCC; R05914; 1; 10;; p. BS GGGGCTTCCC; R05915; 1; 10;; p. BS GGGAAATTCC; R05916; 1; 10;; p. BS GGGACGTCCC; R05917; 1; 10;; p. BS GGGACTTTCC; R05918; 1; 10;; p. BS GGGATTTCCC; R05919; 1; 10;; p. BS GGGAATCCCC; R05920; 1; 10;; p. BS GGGAAGTCCC; R05921; 1; 10;; p. BS GGGAAAACCC; R05922; 1; 10;; p. BS GGGACTTTCC; R05923; 1; 10;; p. BS GGGACTTTCC; R05924; 1; 10;; p. BS GGGAAGTACC; R05925; 1; 10;; p. BS GGGACTTTCC; R05926; 1; 10;; p. BS GGGGATTTCC; R05927; 1; 10;; p. BS GGGACTTTCC; R05928; 1; 10;; p. BS GGGAATTTCC; R05929; 1; 10;; p. BS GGGGCTTTCC; R05930; 1; 10;; p. BS GGGAATTTCC; R05931; 1; 10;; p. BS GGGGAATCCC; R05932; 1; 10;; p. XX CC compiled sequences XX RN [1]; RE0004441. RX PUBMED: 8449662. RA Grilli M., Chiu J. J.-S., Lenardo M. J. RT NF-kappaB and Rel: Participants in a multiform transcriptional regulatory system RL Int. Rev. Cytol. 143:1-62 (1993). RN [2]; RE0000973. RX PUBMED: 1985897. RA Zabel U., Schreck R., Baeuerle P. A. RT DNA binding of purified transcription factor NF-kappaB RL J. Biol. Chem. 266:252-260 (1991). XX // AC M00055 XX ID V$NMYC_01 XX DT 13.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA N-Myc XX DE N-Myc XX BF T01445; N-Myc; Species: mouse, Mus musculus. XX P0 A C G T 01 7 11 6 16 N 02 10 15 6 9 N 03 9 20 6 5 C 04 0 39 1 0 C 05 32 0 4 4 A 06 0 39 0 1 C 07 2 0 38 0 G 08 0 3 0 37 T 09 0 0 40 0 G 10 6 11 8 15 N 11 11 16 5 8 N 12 11 11 11 7 N XX BA 40 selected binding sequences XX CC oligonucleotides bound to bacterially expressed GST-N-Myc fusion protein XX RN [1]; RE0002923. RX PUBMED: 1594445. RA Alex R., Soezeri O., Meyer S., Dildrop R. RT Determination of the DNA sequence recognized by the bHLH-zip domain of the N-Myc protein RL Nucleic Acids Res. 20:2257-2263 (1992). XX // AC M00056 XX ID V$MYOGNF1_01 XX DT 13.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA myogenin / NF-1 XX DE myogenin / nuclear factor 1 or related factors XX BF T00539; NF-1; Species: human, Homo sapiens. BF T00533; NF-1; Species: cat, Felis silvestris catus. BF T00534; NF-1; Species: monkey, Cercopithecus aethiops. BF T00535; NF-1; Species: rat, Rattus norvegicus. BF T00536; NF-1; Species: clawed frog, Xenopus. BF T00537; NF-1; Species: mouse, Mus musculus. BF T01036; NF-1; Species: hamster. BF T01298; NF-1; Species: sheep, Ovis aries. BF T00538; NF-1; Species: domestic pig, Sus scrofa. BF T00599; NF-1/L; Species: rat, Rattus norvegicus. BF T00604; NF-1/Red1; Species: hamster. BF T00544; NF-1A1; Species: chick, Gallus gallus. BF T00551; NF-1B1; Species: chick, Gallus gallus. BF T00552; NF-1B2; Species: chick, Gallus gallus. BF T00554; NF-1C2; Species: chick, Gallus gallus. BF T00610; NF-1X; Species: hamster. XX P0 A C G T 01 1 5 0 2 C 02 5 0 3 0 R 03 0 4 3 1 S 04 1 6 0 1 C 05 1 1 1 5 T 06 0 2 5 1 G 07 0 1 0 7 T 08 0 2 2 4 B 09 0 3 2 3 B 10 3 1 1 3 N 11 3 1 2 2 N 12 2 0 1 5 T 13 0 2 0 6 T 14 0 0 1 7 T 15 0 0 7 1 G 16 0 0 8 0 G 17 1 5 0 1 C 18 5 0 2 1 A 19 1 5 1 1 C 20 0 2 4 2 B 21 0 3 4 1 S 22 3 1 1 3 N 23 0 1 7 0 G 24 0 7 0 1 C 25 1 7 0 0 C 26 6 0 1 1 A 27 4 0 3 1 R 28 1 4 1 2 C 29 3 2 0 3 H XX BA 8 selected binding sequences XX BS TGCACCTGTCGATTTGCGCCGCGCCAGCT; R05973; 10; 29;; p. BS TGTCACCCCAAGCTGGCACGCAGCCAGTA; R05974; 8; 29;; p. BS CACCTGTTTACATGGG AAGGAGCCAACA; R05975; 5; 29; 21; p. BS CACCTGTTCAATTTGGCTTTGTGCAGAAT; R05976; 10; 29;; p. BS AGCTGTTGTTTTCTGGCACCCGCTCAATT; R05977; 5; 29;; p. BS CAGCTGTCGTGTTTGGAGCGCTGCCAACC; R05978; 4; 29;; p. BS CAGCTGTTGTTTTTGGCAGGGAGCCTTCA; R05979; 4; 29;; p. BS CAGCTGTTCGATTTGGTACTTTGCCAGGC; R05980; 4; 29;; p. XX CC 6 CASTing cycles for oligonucleotides with random 35-mers binding to protein complexes in C2C12 myotubes that contain myogenin (or a related antigen); this subgroup of sequences reveals nearby NF-1-like consensus elements XX RN [1]; RE0002924. RX PUBMED: 1329097. RA Funk W. D., Wright W. E. RT Cyclic amplification and selection of targets for multicomponent complexes: Myogenin interacts with factors recognizing binding sites for basic helix--loop--helix, nuclear factor 1, myocyte-specific enhancer-binding factor 2, and COMP1 factor RL Proc. Natl. Acad. Sci. USA 89:9484-9488 (1992). XX // AC M00057 XX ID V$COMP1_01 XX DT 13.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA COMP1 XX DE COMP1 XX BF T01446; COMP1; Species: mouse, Mus musculus. XX P0 A C G T 01 1 1 1 3 N 02 2 2 3 0 V 03 1 1 1 4 T 04 1 1 2 3 N 05 3 0 0 4 W 06 1 0 2 4 T 07 0 2 5 0 G 08 6 0 0 1 A 09 1 0 0 6 T 10 1 0 0 6 T 11 1 0 6 0 G 12 4 1 2 0 A 13 0 6 1 0 C 14 3 1 2 1 N 15 4 0 2 1 A 16 0 4 2 1 C 17 4 0 2 1 A 18 5 1 1 0 A 19 2 2 2 0 V 20 4 2 0 0 A 21 2 1 3 0 R 22 2 1 3 0 R 23 0 2 2 2 B 24 1 2 2 1 N XX BA 7 selected binding sequences XX BS TCCGATGATTGACGTGGCGACAGC; R05981; 12; 24;; p. BS GCAATTGATTGACAGCAACAGCTG; R05982; 3; 24;; p. BS TGTTTGCATTGGCGACGAGAGGGC; R05983; 8; 24;; p. BS ATTTTGATTGACAACAACAGGTG; R05984; 1; 24; 1; p. BS AGTTATGATTGACAGGTGACAGCT; R05985; 8; 24;; p. BS CGTGAGGTAAGCGCACAA; R05986; 18; 24; 36, 37, 38, 39, 40, 41; p. BS TAGCTACATTAGCTATAAACAACA; R05987; 4; 24;; p. XX CC 6 CASTing cycles for oligonucleotides binding to a factor that cooperates with myogenic proteins XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002924. RX PUBMED: 1329097. RA Funk W. D., Wright W. E. RT Cyclic amplification and selection of targets for multicomponent complexes: Myogenin interacts with factors recognizing binding sites for basic helix--loop--helix, nuclear factor 1, myocyte-specific enhancer-binding factor 2, and COMP1 factor RL Proc. Natl. Acad. Sci. USA 89:9484-9488 (1992). XX // AC M00058 XX ID V$HEN1_02 XX DT 13.04.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA HEN1 XX DE HEN1 XX BF T01447; HEN1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 33 16 27 24 N 02 29 12 31 27 N 03 19 7 52 22 G 04 5 0 78 16 G 05 5 2 91 2 G 06 21 29 30 20 N 07 25 72 4 0 C 08 5 14 64 17 G 09 0 100 0 0 C 10 100 0 0 0 A 11 3 5 91 0 G 12 2 88 9 2 C 13 0 0 0 100 T 14 0 0 100 0 G 15 7 67 12 14 C 16 5 3 67 25 G 17 11 30 23 36 N 18 5 80 5 9 C 19 16 68 5 11 C 20 13 57 9 20 C 21 22 41 10 26 N 22 27 16 24 33 N XX BA 54 selected binding sequences XX CC oligonucleotides bound to in vitro-translated HEN1 and isolated by CASTing; figures are percentages XX RN [1]; RE0002926. RX PUBMED: 8289804. RA Brown L., Baer R. RT HEN1 encodes a 20-kilodalton phosphoprotein that binds an extended E-box motif as a homodimer RL Mol. Cell. Biol. 14:1245-1255 (1994). XX // AC M00059 XX ID V$YY1_01 XX DT 13.04.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA YY1 XX DE Yin and Yang 1 XX BF T00278; YY1; Species: mouse, Mus musculus. BF T00865; YY1; Species: mouse, Mus musculus. BF T00915; YY1; Species: human, Homo sapiens. XX P0 A C G T 01 3 4 6 5 N 02 7 5 5 1 N 03 6 3 3 6 N 04 3 7 5 3 N 05 6 2 4 6 N 06 1 13 1 3 C 07 0 18 0 0 C 08 17 1 0 0 A 09 0 0 2 16 T 10 5 3 3 7 N 11 1 2 2 13 T 12 6 2 1 9 W 13 3 4 5 6 N 14 4 4 6 4 N 15 6 4 6 2 N 16 9 2 2 5 W 17 3 6 5 4 N XX BA 18 repressing binding sites from 7 cellular genes and 6 viral genomes XX BS GCGCCCCATACAAGGCG; R05988; 1; 17;; p. BS AGAAACCATTTTCTAAT; R05989; 1; 17;; p. BS GATGTCCATATTAGGAC; R05990; 1; 17;; p. BS GGGGACCATCTCCGAAA; R05991; 1; 17;; p. BS GAAGTCCATCCATTCAC; R05992; 1; 17;; p. BS CGTCGCCATATTTGGGT; R05993; 1; 17;; p. BS GGATATCATTTTGGAAG; R05994; 1; 17;; p. BS CACCTCCATCTTGTTTG; R05995; 1; 17;; p. BS TCCCACCATGTCATTTC; R05996; 1; 17;; p. BS ACTTTTCATTAATACTT; R05997; 1; 17;; p. BS TGTCACCCTAGTTCATA; R05998; 1; 17;; p. BS ACAGTTCATGTATGAAC; R05999; 1; 17;; p. BS CATGTGCAGTTTTACAA; R06000; 1; 17;; p. BS CACACCCATGTGCAGTT; R06001; 1; 17;; p. BS TTGCGACATTTTGCGAC; R06002; 1; 17;; p. BS TAACGCCATTTTGCAAG; R06003; 1; 17;; p. BS TCTAACCAGAGAGACCC; R06004; 1; 17;; p. BS GAATGCCATTTACCGGG; R06005; 1; 17;; p. XX CC compiled sequences XX RN [1]; RE0002938. RX PUBMED: 7816599. RA Shrivastava A., Calame K. RT An analysis of genes regulated by the multi-functional transcriptional regulator Yin Yang-1 RL Nucleic Acids Res. 22:5151-5155 (1994). XX // AC M00060 XX ID I$SN_01 XX DT 13.04.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Sn XX DE Snail XX BF T00751; Sn; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 7 6 7 2 N 02 9 5 4 7 N 03 13 2 13 1 R 04 27 0 8 3 A 05 0 39 1 0 C 06 39 0 0 1 A 07 3 0 37 0 G 08 2 0 38 0 G 09 0 0 0 40 T 10 0 0 37 3 G 11 3 19 3 12 Y 12 19 8 2 4 A 13 7 11 7 5 N XX BA 40 selected binding sequences XX BS GAAACAGGTGCG; R06007; 6; 13;; p. BS GCAACAAGTGCCA; R06008; 2; 13;; p. BS ATACAGGTGCAC; R06009; -1; 13;; p. BS ACAGGTGTCT; R06010; -3; 13;; p. BS GCAGGTGTAA; R06011; -3; 13;; p. BS GCAACAGGTGATA; R06012; 1; 13;; p. BS TCAGGTGCAC; R06013; -3; 13;; p. BS AGAACAGGTGACC; R06014; 1; 13;; p. BS TAACAGGTGCAG; R06015; -1; 13;; p. BS GTGTGGTTCCT; R06016; -2; 13;; p. BS ATAACAGGTGAGT; R06017; 3; 13;; p. BS ACAAGTTGAG; R06018; -3; 13;; p. BS AACACAGGTG; R06019; 8; 13;; p. BS AAAACAGGTTG; R06020; 7; 13;; p. BS ACAGGTGCAA; R06021; -3; 13;; p. BS CAGGTGCTA; R06022; -4; 13;; p. BS GTGACAGGTG; R06023; 8; 13;; p. BS GCAGGTGCAA; R06024; -3; 13;; p. BS TAAGCAGGTGT; R06025; 7; 13;; p. BS GAGGCAGGTGCC; R06026; 6; 13;; p. BS ATGACAGGTGCAC; R06027; 4; 13;; p. BS CTAACAGGTGCAC; R06028; 1; 13;; p. BS ATGACAGGTGCAT; R06029; 3; 13;; p. BS CAGACAGATGTAC; R06030; 2; 13;; p. BS GAGACAGGTGTTG; R06031; 4; 13;; p. BS GCGGCAGGTGT; R06032; 7; 13;; p. BS AGCACAGGTGTA; R06033; 6; 13;; p. BS CCAGCAGGTGT; R06034; 7; 13;; p. BS GCAGGTGCAC; R06035; -3; 13;; p. BS GACAGATGTCT; R06036; -2; 13;; p. BS TGTCAGGTGGAC; R06037; -1; 13;; p. BS CAGGTGCAG; R06038; -4; 13;; p. BS AACAGGTGTCA; R06039; -2; 13;; p. BS CGGACAGGTG; R06040; 8; 13;; p. BS TCAGCAGGTGCAC; R06041; 1; 13;; p. BS ACAGGTGTAC; R06042; -3; 13;; p. BS CAAACAGGTGCTG; R06043; 1; 13;; p. BS GACAGGTGCCG; R06044; -2; 13;; p. BS CGGACAAGTGCAG; R06045; 1; 13;; p. BS ACAGGTGTAC; R06046; -3; 13;; p. XX CC selection from random 17-mers by binding to bacterially expressed beta-Gal-Snail fusion protein XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002928. RX PUBMED: 8371971. RA Mauhin V., Lutz Y., Dennefeld C., Alberga A. RT Definition of the DNA-binding site repertoire for the Drosophila transcription factor SNAIL RL Nucleic Acids Res. 21:3951-3957 (1993). XX // AC M00061 XX ID F$MIG1_01 XX DT 13.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MIG1 XX DE MIG1 XX BF T00509; MIG1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 1 1 6 6 K 02 8 2 1 3 A 03 6 3 1 4 N 04 7 0 2 5 W 05 7 0 0 7 W 06 9 0 0 5 W 07 9 0 0 5 W 08 10 0 2 2 A 09 2 3 1 8 T 10 0 7 7 0 S 11 0 6 0 8 Y 12 0 0 14 0 G 13 0 0 14 0 G 14 0 0 14 0 G 15 0 0 14 0 G 16 5 1 2 6 W 17 7 2 3 2 A XX BA 14 binding sites out of 11 genes XX BS AATAAAAATGCGGGGAA; R06047; 1; 17;; p. BS GGAAATTATCCGGGGGC; R06048; 1; 17;; p. BS GCCTTATTTCTGGGGTA; R06049; 1; 17;; p. BS TATGAATACCTGGGGTT; R06050; 1; 17;; p. BS GCTGAAAATCTGGGGAA; R06051; 1; 17;; p. BS GACATTAATGTGGGGGG; R06052; 1; 17;; p. BS CAATAAAAGCCGGGGCG; R06053; 1; 17;; p. BS GTAATTTTTGTGGGGAA; R06054; 1; 17;; p. BS TTCAATTGTGTGGGGTC; R06055; 1; 17;; p. BS TTATTAAACCCGGGGTA; R06056; 1; 17;; p. BS TAATATAGTGTGGGGAA; R06057; 1; 17;; p. BS TAAATAAACGCGGGGTG; R06058; 1; 17;; p. BS GATATAAAACTGGGGTT; R06059; 1; 17;; p. BS TAGTTAAAAGCGGGGAA; R06060; 1; 17;; p. XX CC compiled sequences XX RN [1]; RE0002929. RX PUBMED: 8114729. RA Lundin M., Nehlin J. O., Ronne H. RT Importance of a flanking AT-rich region in target site recognition by the GC box-binding zinc finger protein MIG1 RL Mol. Cell. Biol. 14:1979-1985 (1994). XX // AC M00062 XX ID V$IRF1_01 XX DT 13.04.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA IRF-1 XX DE interferon regulatory factor 1 XX BF T00423; IRF-1; Species: human, Homo sapiens. BF T00422; IRF-1; Species: mouse, Mus musculus. BF T00424; IRF-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 8 12 1 S 02 9 0 0 0 A 03 21 0 0 0 A 04 20 0 0 1 A 05 21 0 0 0 A 06 1 4 12 1 G 07 0 10 0 11 Y 08 1 0 19 0 G 09 21 0 0 0 A 10 20 1 0 0 A 11 21 0 0 0 A 12 1 14 6 0 C 13 1 13 1 6 C XX BA 21 selected binding sequences XX BS CAAAAGTGAAACT; R06061; 1; 13;; p. BS G AAAGTGAAAGT; R06062; 9; 13; 10; p. BS TAAAACCGAAAGC; R06063; 10; 13;; p. BS G AAA TGAAAGT; R06064; 7; 13; 8,12; p. BS G AAACTGAAACC; R06065; 2; 13; 3; p. BS CAAAACCGAAACC; R06066; 9; 13;; p. BS CAAAAGTGAAAGC; R06067; 3; 13;; p. BS G AAAGTGAAACC; R06068; 10; 13; 11; p. BS CAAAAACGAAACC; R06069; 1; 13;; p. BS G AAAGTGAAACT; R06070; 8; 13; 9; p. BS CAAAACC AAACG; R06071; 5; 13; 12; p. BS G AAAGCAAAAGT; R06072; 6; 13; 7; p. BS CAAAAGTGAAACC; R06073; 1; 13;; p. BS G AAAGTGAAACC; R06074; 1; 13; 2; p. BS G AAAGTGAAACC; R06075; 3; 13; 4; p. BS C AAATCGACAAC; R06076; 8; 13; 9; p. BS G ATAGTGAAACC; R06077; 9; 13; 10; p. BS G AAAGCGAAAGT; R06078; 2; 13; 3; p. BS CAAAA CGAAACA; R06079; 11; 13; 16; p. BS G AAAGCGAAACC; R06080; 1; 13; 2; p. BS GAAAA CGAAACC; R06081; 1; 13; 6; p. XX CC 5 rounds of binding and PCR amplification from random 26-mers XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002930. RX PUBMED: 7687740. RA Tanaka N., Kawakami T., Taniguchi T. RT Recognition DNA sequences of interferon regulatory factor 1 (IRF-1) and IRF-2, regulators of cell growth and the interferon system RL Mol. Cell. Biol. 13:4531-4538 (1993). XX // AC M00063 XX ID V$IRF2_01 XX DT 13.04.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA IRF-2 XX DE interferon regulatory factor 2 XX BF T00425; IRF-2; Species: mouse, Mus musculus. XX P0 A C G T 01 0 1 14 0 G 02 4 0 0 0 A 03 14 0 0 1 A 04 15 0 0 0 A 05 15 0 0 0 A 06 0 1 12 0 G 07 0 7 0 8 Y 08 0 0 15 0 G 09 15 0 0 0 A 10 15 0 0 0 A 11 15 0 0 0 A 12 0 8 7 0 S 13 0 8 2 5 Y XX BA 15 selected binding sequences XX BS G AAAGTGAAACC; R06082; 2; 13; 3; p. BS G AAAGTGAAACT; R06083; 2; 13; 3; p. BS G AAAGTGAAAGT; R06084; 9; 13; 10; p. BS G AAAGTGAAACC; R06085; 9; 13; 10; p. BS GAAAAGCGAAAGC; R06086; 5; 13;; p. BS G AAAGTGAAACC; R06087; 11; 13; 12; p. BS C AAAGCGAAAGT; R06088; 4; 13; 5; p. BS G AAAGCGAAACC; R06089; 2; 13; 3; p. BS G AAACTGAAACC; R06090; 11; 13; 12; p. BS G AAAGTGAAACG; R06091; 5; 13; 6; p. BS G AAAGTGAAACC; R06092; 2; 13; 3; p. BS GAAAAGCGAAAGC; R06093; 2; 13;; p. BS GAAAA CGAAAGT; R06094; 7; 13; 12; p. BS GATAA CGAAAGG; R06095; 2; 13; 7; p. BS G AAAGCGAAAGT; R06096; 2; 13; 3; p. XX CC 5 rounds of binding and PCR amplification from random 26-mers XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002930. RX PUBMED: 7687740. RA Tanaka N., Kawakami T., Taniguchi T. RT Recognition DNA sequences of interferon regulatory factor 1 (IRF-1) and IRF-2, regulators of cell growth and the interferon system RL Mol. Cell. Biol. 13:4531-4538 (1993). XX // AC M00064 XX ID F$PHO4_01 XX DT 13.04.1995 (created); hiwi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA PHO4 XX DE PHO4 XX BF T00690; PHO4; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 1 2 1 4 N 02 3 2 2 1 N 03 2 3 3 0 V 04 0 8 0 0 C 05 8 0 0 0 A 06 0 8 0 0 C 07 0 0 8 0 G 08 0 0 0 8 T 09 0 0 5 3 K 10 0 2 4 2 B 11 1 0 5 2 G 12 2 2 2 2 N XX BA 8 binding sites from 4 genes XX BS CAGCACGTTTTC; R06097; 1; 12;; p. BS TCACACGTGGGA; R06098; 1; 12;; p. BS GGCCACGTGCAG; R06099; 1; 12;; p. BS TGACACGTGGGT; R06100; 1; 12;; p. BS TACCACGTTTTC; R06101; 1; 12;; p. BS CAGCACGTGGGG; R06102; 1; 12;; p. BS TTCCACGTGCGA; R06103; 1; 12;; p. BS ACGCACGTTGGT; R06104; 1; 12;; p. XX CC compiled sequences XX RN [1]; RE0002931. RX PUBMED: 1327757. RA Fisher F., Goding C. R. RT Single amino acid substitutions alter helix--loop--helix protein specificity for bases flanking the core CANNTG motif RL EMBO J. 11:4103-4109 (1992). XX // AC M00065 XX ID V$TAL1BETAE47_01 XX DT 13.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Tal-1beta:E47 XX DE Tal-1beta:E47 heterodimer XX BF T00207; E47; Species: human, Homo sapiens. BF T01448; Tal-1beta; Species: human, Homo sapiens. XX P0 A C G T 01 23 35 28 14 N 02 15 30 23 32 N 03 14 23 44 19 N 04 66 9 14 11 A 05 61 30 3 6 A 06 0 100 0 0 C 07 100 0 0 0 A 08 0 0 100 0 G 09 86 1 10 3 A 10 0 0 0 100 T 11 0 0 100 0 G 12 1 3 61 35 K 13 3 17 1 79 T 14 20 43 17 20 N 15 27 23 31 19 N 16 23 26 32 19 N XX BA 44 selected binding sequences XX CC random 35-mers bound by in vitro co-translated Tal-1beta and E47 after 6 CASTing cycles; figures are percentages XX RN [1]; RE0002932. RX PUBMED: 8289805. RA Hsu H.-L., Huang L., Tsan J. T., Funk W., Wright W. E., Hu J.-S., Kingston R. E., Baer R. RT Preferred sequences for DNA recognition by the TAL1 helix-loop-helix proteins RL Mol. Cell. Biol. 14:1256-1265 (1994). XX // AC M00066 XX ID V$TAL1ALPHAE47_01 XX DT 13.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Tal-1alpha:E47 XX DE Tal-1alpha:E47 heterodimer XX BF T00207; E47; Species: human, Homo sapiens. BF T00790; Tal-1; Species: human, Homo sapiens. XX P0 A C G T 01 18 10 35 37 N 02 14 40 17 29 N 03 12 26 41 21 N 04 59 8 27 6 A 05 65 26 9 0 A 06 0 100 0 0 C 07 100 0 0 0 A 08 0 0 95 4 G 09 86 6 8 0 A 10 0 0 0 100 T 11 0 0 100 0 G 12 1 3 56 40 K 13 0 17 4 79 T 14 19 34 35 12 N 15 34 24 19 23 N 16 17 39 30 14 N XX BA 35 selected binding sequences XX CC random 35-mers bound by in vitro co-translated Tal-1alpha and E47 after 6 CASTing cycles; figures are percentages XX RN [1]; RE0002932. RX PUBMED: 8289805. RA Hsu H.-L., Huang L., Tsan J. T., Funk W., Wright W. E., Hu J.-S., Kingston R. E., Baer R. RT Preferred sequences for DNA recognition by the TAL1 helix-loop-helix proteins RL Mol. Cell. Biol. 14:1256-1265 (1994). XX // AC M00067 XX ID I$HAIRY_01 XX DT 13.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Hairy XX DE Hairy XX BF T00345; H; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 20 30 35 15 N 02 26 30 26 17 N 03 12 16 56 16 G 04 19 15 58 8 G 05 0 96 0 4 C 06 81 12 0 8 A 07 0 100 0 0 C 08 3 0 93 3 G 09 0 83 7 10 C 10 0 12 71 17 G 11 36 41 18 5 M 12 5 62 24 10 C 13 47 21 11 21 N 14 15 15 31 38 N XX BA 29 selected binding sequences XX CC random tetradekamers bound by bacterially expressed hairy protein; figures are percentages XX RN [1]; RE0002933. RX PUBMED: 7958929. RA van Doren M., Bailey A. M., Esnayra J., Ede K., Posakony J. W. RT Negative regulation of proneural gene activity: hairy is a direct transcriptional repressor of achaete RL Genes Dev. 8:2729-2742 (1994). XX // AC M00068 XX ID V$HEN1_01 XX DT 13.04.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA HEN1 XX DE HEN1 XX BF T01447; HEN1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 31 21 18 31 N 02 18 18 21 44 N 03 22 17 44 17 N 04 7 0 84 9 G 05 7 0 82 11 G 06 18 20 35 27 N 07 21 78 0 0 C 08 11 29 33 27 N 09 0 100 0 0 C 10 100 0 0 0 A 11 2 8 83 8 G 12 13 75 12 0 C 13 0 0 0 100 T 14 0 0 100 0 G 15 12 58 17 13 C 16 0 2 71 27 G 17 21 29 25 25 N 18 2 77 4 17 C 19 12 71 4 14 C 20 19 58 8 15 C 21 15 30 20 35 N 22 20 30 23 27 N XX BA 51 selected binding sequences XX CC oligonucleotides bound to in vivo-produced HEN1 (COS1 cells) isolated by CASTing; figures are percentages XX RN [1]; RE0002926. RX PUBMED: 8289804. RA Brown L., Baer R. RT HEN1 encodes a 20-kilodalton phosphoprotein that binds an extended E-box motif as a homodimer RL Mol. Cell. Biol. 14:1245-1255 (1994). XX // AC M00069 XX ID V$YY1_02 XX DT 13.04.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA YY1 XX DE Yin and Yang 1 XX BF T00278; YY1; Species: mouse, Mus musculus. BF T00865; YY1; Species: mouse, Mus musculus. BF T00915; YY1; Species: human, Homo sapiens. XX P0 A C G T 01 2 4 2 3 N 02 2 5 2 2 N 03 2 2 4 3 N 04 1 7 3 0 C 05 1 2 6 2 G 06 2 0 9 0 G 07 0 11 0 0 C 08 0 11 0 0 C 09 11 0 0 0 A 10 0 0 0 11 T 11 0 8 2 1 C 12 1 1 1 8 T 13 2 0 2 7 T 14 0 3 7 1 G 15 2 2 4 3 N 16 2 6 1 2 C 17 1 1 1 8 T 18 1 4 5 1 S 19 2 4 3 2 N 20 4 0 2 5 W XX BA 11 activating binding sites from 8 cellular genes, 1 viral genome and 2 retrotransposon elements XX BS GATCGGCCATCTTGACTCAA; R06105; 1; 20;; p. BS GCCCGACCATTTTCTCTTCT; R06106; 1; 20;; p. BS AATACGCCATGTACCCTGGA; R06107; 1; 20;; p. BS CCCCGGCCATCTTGGCGGCT; R06108; 1; 20;; p. BS TGGCTGCCATCTGTTTTACG; R06109; 1; 20;; p. BS TGGCGGCCATCCGCCGCCTG; R06110; 1; 20;; p. BS CTGGAACCATGGAGGCTGTT; R06111; 1; 20;; p. BS CCGCTGCCATCATGGTTCGA; R06112; 1; 20;; p. BS CCAGGGCCATCTTGAATGGA; R06113; 1; 20;; p. BS ATTCGGCCATCTTGGCTCCT; R06114; 1; 20;; p. BS TCAGCGCCATCTTGTAAGAT; R06115; 1; 20;; p. XX CC compiled sequences XX RN [1]; RE0002938. RX PUBMED: 7816599. RA Shrivastava A., Calame K. RT An analysis of genes regulated by the multi-functional transcriptional regulator Yin Yang-1 RL Nucleic Acids Res. 22:5151-5155 (1994). XX // AC M00070 XX ID V$TAL1BETAITF2_01 XX DT 18.04.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Tal-1beta:ITF-2 XX DE Tal-1beta:ITF-2 heterodimer XX BF T00433; ITF-2; Species: human, Homo sapiens. BF T01448; Tal-1beta; Species: human, Homo sapiens. XX P0 A C G T 01 10 32 43 15 N 02 12 28 35 25 N 03 19 23 37 21 N 04 74 0 14 12 A 05 72 21 5 2 A 06 0 100 0 0 C 07 100 0 0 0 A 08 0 0 98 2 G 09 95 2 3 0 A 10 0 0 0 100 T 11 0 0 100 0 G 12 0 3 63 34 K 13 0 30 0 70 T 14 17 39 20 24 N 15 25 21 14 40 N 16 16 35 26 23 N XX BA 59 selected binding sequences XX CC random 35-mers bound by in vitro co-translated Tal-1beta and ITF-2 (E2-2) after 6 CASTing cycles; figures are percentages XX RN [1]; RE0002932. RX PUBMED: 8289805. RA Hsu H.-L., Huang L., Tsan J. T., Funk W., Wright W. E., Hu J.-S., Kingston R. E., Baer R. RT Preferred sequences for DNA recognition by the TAL1 helix-loop-helix proteins RL Mol. Cell. Biol. 14:1256-1265 (1994). XX // AC M00071 XX ID V$E47_02 XX DT 18.04.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA E47 XX DE E47 XX BF T00207; E47; Species: human, Homo sapiens. XX P0 A C G T 01 41 24 17 17 N 02 31 24 14 31 N 03 17 17 30 36 N 04 50 26 7 17 M 05 50 14 33 3 R 06 0 100 0 0 C 07 100 0 0 0 A 08 0 5 92 3 G 09 0 16 84 0 G 10 0 0 0 100 T 11 0 0 100 0 G 12 0 24 13 63 T 13 20 3 8 69 T 14 34 46 11 9 M 15 34 27 24 15 N 16 25 37 22 16 N XX BA 38 selected binding sequences XX CC random 35-mers bound by in vitro translated E47 after 6 CASTing cycles; figures are percentages XX RN [1]; RE0002932. RX PUBMED: 8289805. RA Hsu H.-L., Huang L., Tsan J. T., Funk W., Wright W. E., Hu J.-S., Kingston R. E., Baer R. RT Preferred sequences for DNA recognition by the TAL1 helix-loop-helix proteins RL Mol. Cell. Biol. 14:1256-1265 (1994). XX // AC M00072 XX ID V$CP2_01 XX DT 21.04.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CP2 XX DE CP2 XX BF T00152; CP2; Species: mouse, Mus musculus. BF T00155; CP2; Species: mouse, Mus musculus. BF T02527; CP2; Species: mouse, Mus musculus. XX P0 A C G T 01 0 1 5 0 G 02 0 5 1 0 C 03 2 2 0 2 H 04 2 4 0 0 C 05 2 0 2 2 D 06 5 1 0 0 A 07 2 3 1 0 M 08 0 6 0 0 C 09 2 4 0 0 C 10 6 0 0 0 A 11 0 0 6 0 G XX BA 6 binding sites from the murine alpha-globin gene promoter XX BS GCACAACCCAG; R06116; 1; 11;; p. BS CCCAGCCCCAG; R06117; 1; 11;; p. BS GCCCTAACAAG; R06118; 1; 11;; p. BS GCTCTACCCAG; R06119; 1; 11;; p. BS GGTAGAGCAAG; R06120; 1; 11;; p. BS GCACAAACCAG; R06121; 1; 11;; p. XX CC compiled sequences XX RN [1]; RE0002945. RX PUBMED: 2233727. RA Kim C. G., Swendeman S. L., Barnhart K. M., Sheffery M. RT Promoter elements and erythroid cell nuclear factors that regulate alpha-globin gene transcription in vitro RL Mol. Cell. Biol. 10:5958-5966 (1990). XX // AC M00073 XX ID V$DELTAEF1_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA deltaEF1 XX DE deltaEF1 XX BF T01467; deltaEF1; Species: chick, Gallus gallus. XX P0 A C G T 01 32 22 14 32 N 02 20 39 7 34 N 03 15 24 15 46 N 04 0 83 3 14 C 05 97 0 0 3 A 06 0 100 0 0 C 07 0 97 3 0 C 08 0 0 0 100 T 09 24 5 39 32 N 10 54 12 22 12 A 11 39 20 27 12 N XX BA 41 selected binding sequences XX CC 3 rounds of selection of random 15-mers bound to bacterially expressed C-terminal zinc finger domain of GST-deltaEF1 fusion protein; figures are percentages XX RN [1]; RE0002957. RX PUBMED: 8065305. RA Sekido R., Murai K., Funahashi J.-i., Kamachi Y., Fujisawa-Sehara A., Nabeshima Y.-I., Kondoh H. RT The delta-crystallin enhancer-binding protein deltaEF1 is a repressor of E2-box-mediated gene activation RL Mol. Cell. Biol. 14:5692-5700 (1994). XX // AC M00074 XX ID V$CETS1P54_02 XX DT 24.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA c-Ets-1(p54) XX DE c-Ets-1(p54) XX BF T00114; c-Ets-1 54; Species: chick, Gallus gallus. XX P0 A C G T 01 9 11 9 4 N 02 9 11 6 9 N 03 19 4 4 9 A 04 10 20 6 2 C 05 13 18 2 5 M 06 0 0 40 0 G 07 0 0 40 0 G 08 40 0 0 0 A 09 23 0 0 17 W 10 15 5 15 4 R 11 10 8 1 20 T 12 9 5 7 15 N 13 11 9 7 8 N XX BA 40 selected binding sequences XX CC 3 rounds of selection of random oligonucleotides XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002958. RX PUBMED: 1542566. RA Woods D. B., Ghysdael J., Owen M. J. RT Identification of nucleotide preferences in DNA sequences recognised specifially by c-Ets-1 protein RL Nucleic Acids Res. 20:699-704 (1992). XX // AC M00075 XX ID V$GATA1_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GATA-1 XX DE GATA-binding factor 1 XX BF T00305; GATA-1; Species: mouse, Mus musculus. XX P0 A C G T 01 5 22 20 6 S 02 11 17 20 5 N 03 11 15 10 17 N 04 0 0 53 0 G 05 50 1 0 2 A 06 1 1 1 50 T 07 18 6 18 11 N 08 6 14 24 9 N 09 6 14 18 14 N 10 7 11 19 15 N XX BA 53 selected binding sequences XX RN [1]; RE0002959. RX PUBMED: 8321207. RA Merika M., Orkin S. H. RT DNA-binding specificity of GATA family transcription factors RL Mol. Cell. Biol. 13:3999-4010 (1993). XX // AC M00076 XX ID V$GATA2_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GATA-2 XX DE GATA-binding factor 2 XX BF T00308; GATA-2; Species: human, Homo sapiens. XX P0 A C G T 01 6 16 18 13 N 02 15 18 18 2 N 03 13 12 18 10 N 04 0 4 49 0 G 05 52 0 0 1 A 06 0 1 0 52 T 07 27 6 14 6 R 08 7 13 23 10 N 09 5 20 15 13 N 10 7 13 19 14 N XX BA 53 selected binding sequences XX RN [1]; RE0002959. RX PUBMED: 8321207. RA Merika M., Orkin S. H. RT DNA-binding specificity of GATA family transcription factors RL Mol. Cell. Biol. 13:3999-4010 (1993). XX // AC M00077 XX ID V$GATA3_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GATA-3 XX DE GATA-binding factor 3 XX BF T00311; GATA-3; Species: human, Homo sapiens. XX P0 A C G T 01 16 14 24 9 N 02 26 13 9 15 N 03 0 0 63 0 G 04 62 0 0 1 A 05 1 0 3 59 T 06 35 2 10 16 A 07 17 5 33 8 R 08 10 11 26 16 N 09 15 7 34 7 G XX BA 63 selected binding sequences XX RN [1]; RE0002959. RX PUBMED: 8321207. RA Merika M., Orkin S. H. RT DNA-binding specificity of GATA family transcription factors RL Mol. Cell. Biol. 13:3999-4010 (1993). XX // AC M00078 XX ID V$EVI1_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Evi-1 XX DE ectopic viral integration site 1 encoded factor XX BF T00273; Evi-1; Species: mouse, Mus musculus. XX P0 A C G T 01 7 0 1 5 W 02 0 0 13 0 G 03 13 0 0 0 A 04 0 5 1 7 Y 05 12 0 0 1 A 06 13 0 0 0 A 07 0 0 13 0 G 08 13 0 0 0 A 09 0 3 0 10 T 10 11 0 0 2 A 11 13 0 0 0 A 12 0 0 13 0 G 13 13 0 0 0 A 14 0 1 1 11 T 15 11 1 0 1 A 16 11 1 0 1 A XX BA 13 selected binding sequences XX BS TGACAAGATAAGATAA; R06162; 4; 16;; p. BS AGACAAGATAAGATAA; R06163; 14; 16;; p. BS AGACAAGATAAGATAC; R06164; 12; 16;; p. BS TGACAAGACAAGATAA; R06165; 3; 16;; p. BS TGACTAGACAAGATAA; R06166; 1; 16;; p. BS TGATAAGACTAGATAA; R06167; 20; 16;; p. BS AGATAAGATAAGACAA; R06168; 13; 16;; p. BS AGATAAGATAAGATAA; R06169; 1; 16;; p. BS GGATAAGATAAGATAA; R06170; 3; 16;; p. BS AGATAAGATAAGAGAT; R06171; 11; 16;; p. BS AGATAAGATTAGATTA; R06172; 5; 16;; p. BS TGAGAAGATAAGATAA; R06173; 1; 16;; p. BS AGATAAGATAAGATCA; R06174; 18; 16;; p. XX CC 6 rounds of selection of random 35-mers bound to bacterially expressed fusion protein of GST and the N-terminal zinc finger domain of Evi-1; sequences that yield to a 15-Nt consensus XX RN [1]; RE0002960. RX PUBMED: 8321231. RA Delwel R., Funabiki T., Kreider B. L., Morishita K., Ihle J. N. RT Four of the seven zinc fingers of the Evi-1 myeloid-transforming gene are required for sequence-specific binding to GA(C/T)AAGA(T/C)AAGATAA RL Mol. Cell. Biol. 13:4291-4300 (1993). XX // AC M00079 XX ID V$EVI1_02 XX DT 24.04.1995 (created); hiwi. DT 10.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Evi-1 XX DE ectopic viral integration site 1 encoded factor XX BF T00273; Evi-1; Species: mouse, Mus musculus. XX P0 A C G T 01 8 1 2 3 A 02 0 0 13 1 G 03 14 0 0 0 A 04 0 7 0 7 Y 05 14 0 0 0 A 06 14 0 0 0 A 07 0 0 14 0 G 08 14 0 0 0 A 09 0 3 0 11 T 10 13 1 0 0 A 11 11 0 3 0 A XX BA 14 selected binding sequences XX BS GGACAAGATAA; R06175; 9; 11;; p. BS AGACAAGATAG; R06176; 5; 11;; p. BS AGACAAGATAG; R06177; 16; 11;; p. BS GGACAAGATAG; R06178; 22; 11;; p. BS TGACAAGATCA; R06179; 10; 11;; p. BS CGACAAGACAA; R06180; 5; 11;; p. BS ATACAAGACAA; R06181; 2; 11;; p. BS TGATAAGATAA; R06182; 21; 11;; p. BS AGATAAGATAA; R06183; 24; 11;; p. BS TGATAAGATAA; R06184; 8; 11;; p. BS AGATAAGATAA; R06185; 2; 11;; p. BS AGATAAGATAA; R06186; 5; 11;; p. BS AGATAAGATAA; R06187; 12; 11;; p. BS AGATAAGACAA; R06188; 1; 11;; p. XX CC 6 rounds of selection of random 35-mers bound to bacterially expressed fusion protein of GST and the N-terminal zinc finger domain of Evi-1; sequences that yield to a 10-Nt consensus XX RN [1]; RE0002960. RX PUBMED: 8321231. RA Delwel R., Funabiki T., Kreider B. L., Morishita K., Ihle J. N. RT Four of the seven zinc fingers of the Evi-1 myeloid-transforming gene are required for sequence-specific binding to GA(C/T)AAGA(T/C)AAGATAA RL Mol. Cell. Biol. 13:4291-4300 (1993). XX // AC M00080 XX ID V$EVI1_03 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Evi-1 XX DE ectopic viral integration site 1 encoded factor XX BF T00273; Evi-1; Species: mouse, Mus musculus. XX P0 A C G T 01 23 0 0 4 A 02 0 0 27 0 G 03 27 0 0 0 A 04 0 2 0 25 T 05 26 0 0 1 A 06 27 0 0 0 A 07 0 0 27 0 G 08 27 0 0 0 A 09 0 0 0 27 T 10 26 0 0 1 A 11 19 1 4 3 A XX BA 27 selected binding sequences XX BS AGATAAGATAA; R06189; 9; 11;; p. BS AGATAAGATAA; R06190; 9; 11;; p. BS AGATAAGATAG; R06191; 10; 11;; p. BS TGATAAGATTA; R06192; 2; 11;; p. BS AGATAAGATAT; R06193; 7; 11;; p. BS AGATAAGATAA; R06194; 5; 11;; p. BS AGATAAGATAG; R06195; 6; 11;; p. BS AGACAAGATAG; R06196; 7; 11;; p. BS AGATAAGATAA; R06197; 6; 11;; p. BS AGATAAGATAA; R06198; 5; 11;; p. BS TGATAAGATAT; R06199; 2; 11;; p. BS AGATAAGATAA; R06200; 9; 11;; p. BS AGATAAGATAA; R06201; 4; 11;; p. BS AGATAAGATAA; R06202; 4; 11;; p. BS AGATAAGATAA; R06203; 8; 11;; p. BS TGATAAGATAA; R06204; 9; 11;; p. BS AGATAAGATAA; R06205; 4; 11;; p. BS AGATAAGATAA; R06206; 5; 11;; p. BS AGATAAGATAA; R06207; 6; 11;; p. BS TGACTAGATAT; R06208; 2; 11;; p. BS AGATAAGATAA; R06209; 4; 11;; p. BS AGATAAGATAA; R06210; 5; 11;; p. BS AGATAAGATAA; R06211; 8; 11;; p. BS AGATAAGATAA; R06212; 4; 11;; p. BS AGATAAGATAG; R06213; 8; 11;; p. BS AGATAAGATAC; R06214; 4; 11;; p. BS AGATAAGATAA; R06215; 8; 11;; p. XX CC random 15-mers bound to bacterially expressed GST-fusion protein of Evi-1 zinc fingers 5 to 7 XX RN [1]; RE0002960. RX PUBMED: 8321231. RA Delwel R., Funabiki T., Kreider B. L., Morishita K., Ihle J. N. RT Four of the seven zinc fingers of the Evi-1 myeloid-transforming gene are required for sequence-specific binding to GA(C/T)AAGA(T/C)AAGATAA RL Mol. Cell. Biol. 13:4291-4300 (1993). XX // AC M00081 XX ID V$EVI1_04 XX DT 24.04.1995 (created); hiwi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Evi-1 XX DE ectopic viral integration site 1 encoded factor XX BF T00273; Evi-1; Species: mouse, Mus musculus. XX P0 A C G T 01 3 0 3 2 D 02 2 0 6 0 G 03 6 1 0 1 A 04 1 1 0 6 T 05 7 0 0 1 A 06 3 0 2 3 D 07 2 0 6 0 G 08 6 0 0 2 A 09 2 2 0 4 H 10 5 0 0 3 W 11 5 0 2 1 A 12 2 0 6 0 G 13 6 0 0 2 A 14 2 0 0 6 T 15 6 1 0 1 A XX BA 8 selected binding sequences XX BS GACTAGATATGATAT; R06216; 3; 15;; p. BS TGATTAGATAAGATA; R06217; 2; 15;; p. BS GATAAGATATGATAC; R06218; 3; 15;; p. BS AGATAAGATAAGATA; R06219; 5; 15;; p. BS AGATAAGACTAGATA; R06220; 4; 15;; p. BS AGATATGATATGATA; R06221; 4; 15;; p. BS GGACATGATAAGATA; R06222; 4; 15;; p. BS TGATATGACAAGATA; R06223; 2; 15;; p. XX CC random 15-mers bound to bacterially expressed GST-fusion protein of Evi-1 zinc fingers 4 to 6; sequences yielding a 14-Nt consensus XX RN [1]; RE0002960. RX PUBMED: 8321231. RA Delwel R., Funabiki T., Kreider B. L., Morishita K., Ihle J. N. RT Four of the seven zinc fingers of the Evi-1 myeloid-transforming gene are required for sequence-specific binding to GA(C/T)AAGA(T/C)AAGATAA RL Mol. Cell. Biol. 13:4291-4300 (1993). XX // AC M00082 XX ID V$EVI1_05 XX DT 24.04.1995 (created); hiwi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Evi-1 XX DE ectopic viral integration site 1 encoded factor XX BF T00273; Evi-1; Species: mouse, Mus musculus. XX P0 A C G T 01 14 0 1 4 A 02 1 0 18 0 G 03 18 1 0 0 A 04 0 4 0 15 T 05 18 0 0 1 A 06 15 0 1 3 A 07 1 0 18 0 G 08 18 0 0 1 A 09 1 0 0 18 T 10 18 0 0 1 A 11 7 1 6 4 N XX BA 19 selected binding sequences XX BS AGATAAGATAG; R06224; 6; 11;; p. BS AGATAAGATAA; R06225; 6; 11;; p. BS TGACTAGATAT; R06226; 2; 11;; p. BS GACTAGATAT; R06227; 3; 11; 13; p. BS AGATAAGATAC; R06228; 9; 11;; p. BS TGATAAGATAT; R06229; 6; 11;; p. BS AGATAAGATAA; R06230; 4; 11;; p. BS AGATAAGATAG; R06231; 10; 11;; p. BS AGATAAGATAA; R06232; 6; 11;; p. BS AGACAAGATAG; R06233; 8; 11;; p. BS AGATAAGATAA; R06234; 8; 11;; p. BS TGATATGATAT; R06235; 1; 11;; p. BS AGATAAGATAG; R06236; 6; 11;; p. BS AGATAAGATAA; R06237; 4; 11;; p. BS AGACATGATAG; R06238; 8; 11;; p. BS AGATATGATAG; R06239; 7; 11;; p. BS TGACAAGATAT; R06240; 3; 11;; p. BS AGATAAGATAA; R06241; 5; 11;; p. BS AGATAAGATAA; R06242; 8; 11;; p. XX CC random 15-mers bound to bacterially expressed GST-fusion protein of Evi-1 zinc fingers 4 to 6; sequences giving rise to a 10-Nt consensus XX RN [1]; RE0002960. RX PUBMED: 8321231. RA Delwel R., Funabiki T., Kreider B. L., Morishita K., Ihle J. N. RT Four of the seven zinc fingers of the Evi-1 myeloid-transforming gene are required for sequence-specific binding to GA(C/T)AAGA(T/C)AAGATAA RL Mol. Cell. Biol. 13:4291-4300 (1993). XX // AC M00083 XX ID V$MZF1_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA MZF1 XX DE MZF1 XX BF T00529; MZF-1; Species: human, Homo sapiens. XX P0 A C G T 01 8 3 6 3 N 02 4 2 11 3 G 03 3 3 5 9 N 04 0 0 20 0 G 05 1 0 18 1 G 06 0 0 19 1 G 07 0 0 20 0 G 08 18 1 1 0 A XX BA 20 selected binding sequences XX BS CAGGGGGA; R06243; 1; 8;; p. BS CACGGGGA; R06244; 2; 8;; p. BS TTTGGGGA; R06245; 2; 8;; p. BS AGAGGGGA; R06246; 6; 8;; p. BS AGTGGGGA; R06247; 1; 8;; p. BS CAGGGGGA; R06248; 1; 8;; p. BS TGAGGGGA; R06249; 6; 8;; p. BS AGTGGGGA; R06250; 1; 8;; p. BS GGAGGGGA; R06251; 4; 8;; p. BS AGCGGGGA; R06252; 1; 8;; p. BS AGTGGGGA; R06253; 4; 8;; p. BS ACTGTTGA; R06254; 1; 8;; p. BS GATGGGGG; R06255; 6; 8;; p. BS GGGGGGGA; R06256; 1; 8;; p. BS GGTGGGGA; R06257; 5; 8;; p. BS GGGGGGGA; R06258; 6; 8;; p. BS ATTGGGGA; R06259; 5; 8;; p. BS AGCGGGGA; R06260; 1; 8;; p. BS GTTGGGGC; R06261; 8; 8;; p. BS TCGGAGGA; R06262; 1; 8;; p. XX CC 14-mers bound to bacterially expressed MZF1 zinc fingers 1-4 XX RN [1]; RE0002961. RX PUBMED: 8114711. RA Morris J. F., Hromas R., Rauscher III F. J. RT Characterization of the DNA-binding properties of the myeloid zinc finger protein MZF1: two independent DNA-binding domains recognize two DNA consensus sequences with a common G-rich core RL Mol. Cell. Biol. 14:1786-1795 (1994). XX // AC M00084 XX ID V$MZF1_02 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA MZF1 XX DE MZF1 XX BF T00529; MZF-1; Species: human, Homo sapiens. XX P0 A C G T 01 2 1 7 6 K 02 3 2 7 4 N 03 4 1 8 3 N 04 2 4 4 6 N 05 0 0 10 6 K 06 13 0 3 0 A 07 1 0 12 3 G 08 0 0 15 1 G 09 1 1 14 0 G 10 1 0 13 2 G 11 3 4 7 2 N 12 11 0 2 3 A 13 10 3 2 1 A XX BA 16 selected binding sequences XX BS TCTTTATGGGGAT; R06263; 5; 13;; p. BS GCTGGAGTGGGGA; R06264; 8; 13;; p. BS CGGGGATGCTTAA; R06265; 1; 13;; p. BS TGGGGATGGTCAA; R06266; 1; 13;; p. BS TAACTAGGGGCAC; R06267; 10; 13;; p. BS GAACTAGGGGATC; R06268; 4; 13;; p. BS GTCTGAGGGGAAC; R06269; 7; 13;; p. BS TTACGAGGGGGAA; R06270; 8; 13;; p. BS GTGCTAGGGGGAA; R06271; 1; 13;; p. BS GGGAGAAGGGGAA; R06272; 1; 13;; p. BS TGTAGGGGGGGTA; R06273; 2; 13;; p. BS TGGTGAGGGGGGA; R06274; 4; 13;; p. BS AGGGGGGGGGAAA; R06275; 3; 13;; p. BS GTGTTAGGGGTAG; R06276; 3; 13;; p. BS GGGTTAGGGACTG; R06277; 6; 13;; p. BS AAATGGGGAGCAA; R06278; 4; 13;; p. XX CC random 14-mers bound to bacterially expressed MZF1 zinc fingers 5-13 XX RN [1]; RE0002961. RX PUBMED: 8114711. RA Morris J. F., Hromas R., Rauscher III F. J. RT Characterization of the DNA-binding properties of the myeloid zinc finger protein MZF1: two independent DNA-binding domains recognize two DNA consensus sequences with a common G-rich core RL Mol. Cell. Biol. 14:1786-1795 (1994). XX // AC M00085 XX ID V$ZID_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA ZID XX DE zinc finger with interaction domain XX BF T01468; ZID; Species: human, Homo sapiens. XX P0 A C G T 01 3 12 9 11 N 02 2 5 28 0 G 03 1 0 31 3 G 04 0 35 0 0 C 05 1 0 0 34 T 06 0 35 0 0 C 07 3 15 1 16 Y 08 32 1 1 1 A 09 0 3 8 24 T 10 1 23 7 4 C 11 23 0 7 5 A 12 0 15 0 20 Y 13 4 26 2 3 C XX BA 35 selected binding sequences XX BS CGGCTCCATCATC; R06279; 24; 13;; p. BS TGGCTCCATCATC; R06280; 24; 13;; p. BS AGGCTCCATCATC; R06281; 15; 13;; p. BS TGGCTCCATCATA; R06282; 15; 13;; p. BS GGGCTCCATCGCA; R06283; 11; 13;; p. BS CGGCTCCATCGCC; R06284; 16; 13;; p. BS GGGCTCCATGTCG; R06285; 27; 13;; p. BS AGGCTCCATCGTA; R06286; 15; 13;; p. BS TGGCTCCGTGTTT; R06287; 23; 13;; p. BS GGGCTCCAGCATC; R06288; 12; 13;; p. BS CGGCTCTATCATC; R06289; 13; 13;; p. BS TGGCTCTATGTCC; R06290; 16; 13;; p. BS CGGCTCTATGTCG; R06291; 27; 13;; p. BS TGGCTCTATAATC; R06292; 20; 13;; p. BS CGGCTCTATTATC; R06293; 10; 13;; p. BS TGGCTCTACGACT; R06294; 14; 13;; p. BS TGGCTCTAGTATC; R06295; 17; 13;; p. BS TGGCTCTAGCACC; R06296; 14; 13;; p. BS TGGCTCTAGCATC; R06297; 24; 13;; p. BS TGGCTCTAGCACC; R06298; 17; 13;; p. BS CGGCTCTAGGGCC; R06299; 10; 13;; p. BS CGGCTCACTCACC; R06300; 11; 13;; p. BS GGGCTCGATCACT; R06301; 26; 13;; p. BS CAGCTCCATCATC; R06302; 24; 13;; p. BS CAGCTCAAGCGCC; R06303; 25; 13;; p. BS TCGCTCCATCGCC; R06304; 9; 13;; p. BS GCGCTCTATCATC; R06305; 20; 13;; p. BS GCGCTCTATCATC; R06306; 21; 13;; p. BS ACGCTCTATTATC; R06307; 18; 13;; p. BS CCGCTCTACTATC; R06308; 15; 13;; p. BS GGACTCAAGCGTC; R06309; 21; 13;; p. BS GGTCTCTATGTCC; R06310; 18; 13;; p. BS GGTCTCCATCACC; R06311; 25; 13;; p. BS CGTCTCCATCATC; R06312; 20; 13;; p. BS CGGCACCTCCATA; R06313; 10; 13;; p. XX RN [1]; RE0002962. RX PUBMED: 7958847. RA Bardwell V. J., Treisman R. RT The POZ domain: A conserved protein--protein interaction motif RL Genes Dev. 8:1664-1677 (1994). XX // AC M00086 XX ID V$IK1_01 XX DT 24.04.1995 (created); hiwi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Ik-1 XX DE Ikaros 1 XX BF T01469; Ik-1; Species: mouse, Mus musculus. XX P0 A C G T 01 7 5 7 5 N 02 6 9 0 9 H 03 3 3 7 11 N 04 2 6 1 15 T 05 2 0 22 0 G 06 0 0 24 0 G 07 0 0 24 0 G 08 24 0 0 0 A 09 22 0 0 2 A 10 3 4 2 15 T 11 11 2 8 3 R 12 3 13 2 6 C 13 3 14 3 4 C XX BA 24 selected binding sequences XX CC 5 rounds of selection of 15-mers bound to bacterially expressed GST-Ik-1 fusion protein XX RN [1]; RE0002963. RX PUBMED: 7969165. RA Molnar A., Georgopoulos K. RT The Ikaros gene encodes a family of functionally diverse zinc finger DNA-binding proteins RL Mol. Cell. Biol. 14:8292-8303 (1994). XX // AC M00087 XX ID V$IK2_01 XX DT 24.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Ik-2 XX DE Ikaros 2 XX BF T01470; Ik-2; Species: mouse, Mus musculus. XX P0 A C G T 01 9 10 12 5 N 02 11 5 7 13 N 03 5 7 7 17 N 04 6 10 0 20 T 05 6 0 30 0 G 06 0 0 36 0 G 07 0 0 36 0 G 08 36 0 0 0 A 09 18 5 1 12 W 10 10 7 6 13 N 11 12 8 9 7 N 12 9 18 5 4 C XX BA 36 selected binding sequences XX CC 5 rounds of selection of 15-mers bound to bacterially expressed GST-Ik-2 fusion protein XX RN [1]; RE0002963. RX PUBMED: 7969165. RA Molnar A., Georgopoulos K. RT The Ikaros gene encodes a family of functionally diverse zinc finger DNA-binding proteins RL Mol. Cell. Biol. 14:8292-8303 (1994). XX // AC M00088 XX ID V$IK3_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Ik-3 XX DE Ikaros 3 XX BF T01471; Ik-3; Species: mouse, Mus musculus. XX P0 A C G T 01 3 0 7 15 T 02 8 8 5 4 N 03 0 13 3 9 Y 04 6 5 0 14 T 05 5 0 20 0 G 06 0 0 25 0 G 07 0 0 25 0 G 08 25 0 0 0 A 09 25 0 0 0 A 10 0 7 0 18 T 11 16 0 5 4 A 12 1 18 0 6 C 13 1 17 0 7 C XX BA 25 selected binding sequences XX CC 5 rounds of selection of 15-mers bound to bacterially expressed GST-Ik-3 fusion protein XX RN [1]; RE0002963. RX PUBMED: 7969165. RA Molnar A., Georgopoulos K. RT The Ikaros gene encodes a family of functionally diverse zinc finger DNA-binding proteins RL Mol. Cell. Biol. 14:8292-8303 (1994). XX // AC M00089 XX ID P$ATHB1_01 XX DT 24.04.1995 (created); hiwi. DT 27.08.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Athb-1 XX DE Arabidopsis thaliana homeo box protein 1 XX BF T01474; ATHB-1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 7 3 3 4 N 02 1 5 3 10 Y 03 4 4 7 4 N 04 3 13 4 3 C 05 22 1 0 1 A 06 25 0 0 0 A 07 0 0 0 25 T 08 0 5 0 20 T 09 25 0 0 0 A 10 0 0 0 25 T 11 0 0 0 25 T 12 3 1 12 0 G 13 2 8 4 1 S 14 8 1 3 1 A XX BA 25 selected binding sequences XX BS ATACAATTATTGGA; R06314; 2; 14;; p. BS CAATTATTGCA; R06315; -3; 14;; p. BS TTGAAATTATTG; R06316; 4; 14;; p. BS CAATTATTACG; R06317; -3; 14;; p. BS TCTCAATCATT; R06318; 5; 14;; p. BS ATGCAATCATTCA; R06319; 3; 14;; p. BS TCACAATTATT; R06320; 5; 14;; p. BS AGCGTATTATTGCA; R06321; 2; 14;; p. BS ATTATTGAG; R06322; -5; 14;; p. BS ACCCAATCATT; R06323; 5; 14;; p. BS TAATTATTGCA; R06324; -3; 14;; p. BS ATTCAATTATT; R06325; 5; 14;; p. BS CTTGAATTATTGGA; R06326; 1; 14;; p. BS ACGGCATTATT; R06327; 5; 14;; p. BS AGTAATTATTGCT; R06328; -1; 14;; p. BS CAATTATTGCA; R06329; -3; 14;; p. BS GTTCAATTATT; R06330; 5; 14;; p. BS GGGTAATTATT; R06331; 5; 14;; p. BS TGCAATCATTAGC; R06332; -1; 14;; p. BS AGACAATTATT; R06333; 5; 14;; p. BS TTAAAATTATTGCA; R06334; 2; 14;; p. BS CTCGAATTATTGG; R06335; 3; 14;; p. BS CCCAAATTATTGCA; R06336; 2; 14;; p. BS GTGCAATCATT; R06337; 5; 14;; p. BS AATTATTATG; R06338; -4; 14;; p. XX CC 4 rounds of selection of 15-mers bound to bacterially expressed GST-Athb-1 fusion protein XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002964. RX PUBMED: 8253077. RA Sessa G., Morelli G., Ruberti I. RT The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities RL EMBO J. 12:3507-3517 (1993). XX // AC M00090 XX ID I$ABDB_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Abd-B XX DE Abdominal-B XX BF T01476; Abd-B; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 8 5 8 3 N 02 3 12 11 3 S 03 9 9 9 7 N 04 0 1 7 28 T 05 4 2 4 29 T 06 11 2 8 24 T 07 36 2 0 7 A 08 6 7 1 31 T 09 2 2 30 9 G 10 10 4 24 4 G 11 1 32 6 1 C 12 8 10 11 7 N 13 11 8 8 4 N 14 5 9 7 6 N XX BA 45 selected binding sequences XX CC 2 rounds of selection of 18-mers bound to bacterially expressed Abd-B protein XX RN [1]; RE0002965. RX PUBMED: 7914870. RA Ekker S. C., Jackson D. G., von Kessler D. P., Sun B. I., Young K. E., Beachy P. A. RT The degree of variation in DNA sequence recognition among four Drosophila homeotic proteins RL EMBO J. 13:3551-3560 (1994). XX // AC M00091 XX ID I$BRCZ1_01 XX DT 24.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA BR-C Z1 XX DE Broad-Complex Z1 XX BF T01477; BR-C Z1; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 5 0 0 4 W 02 3 1 2 3 N 03 3 1 4 1 R 04 1 1 1 6 T 05 5 2 1 1 A 06 7 0 1 1 A 07 3 0 0 6 T 08 6 0 0 3 A 09 4 1 4 0 R 10 7 0 1 1 A 11 1 8 0 0 C 12 9 0 0 0 A 13 8 0 1 0 A 14 5 0 3 1 R 15 4 0 0 5 W 16 2 3 2 2 N 17 3 2 0 4 W 18 3 3 2 1 N XX BA 9 binding sites within the Pig-1/Sgs-4 intergenic region XX BS AGTCAAATATCAAATCTC; R06339; 1; 18;; p. BS TGGTTGAAAACAATAGAG; R06340; 1; 18;; p. BS ATCTAATTGGCAAATGAC; R06341; 1; 18;; p. BS TAGACATAGACAAGACTC; R06342; 1; 18;; p. BS AAATAATAAACAAAATAA; R06343; 1; 18;; p. BS AAATAATAAACAAAACCA; R06344; 1; 18;; p. BS ACAGAATAGAAAGGTATA; R06345; 1; 18;; p. BS TTGTCTTTCACAAATATT; R06346; 1; 18;; p. BS TTGTGAAAGACAAGTTCG; R06347; 1; 18;; p. XX CC compiled sequences, bound in vitro by bacterially expressed protein XX RN [1]; RE0002966. RX PUBMED: 8062827. RA von Kalm L., Crossgrove K., Von Seggern D., Guild G. M., Beckendorf S. K. RT The Broad-Complex directly controls a tissue-specific response to the steroid hormone ecdysone at the onset of Drosophila metamorphosis RL EMBO J. 13:3505-3516 (1994). XX // AC M00092 XX ID I$BRCZ2_01 XX DT 24.04.1995 (created); hiwi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA BR-C Z2 XX DE Broad-Complex Z2 XX BF T01478; BR-C Z2; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 3 1 3 5 N 02 2 3 2 5 N 03 0 5 3 4 B 04 2 1 2 7 T 05 2 1 3 6 N 06 3 1 1 7 T 07 5 2 1 4 N 08 0 10 0 2 C 09 0 1 0 11 T 10 12 0 0 0 A 11 1 1 2 8 T 12 2 0 1 9 T 13 1 2 1 8 T 14 2 2 3 5 N 15 1 0 3 8 T 16 1 3 1 7 T XX BA 12 binding sites within the Pig-1/Sgs-4 intergenic region XX BS GCTTTTACTATAAATT; R06348; 1; 16;; p. BS TTTTCAACCATTTTTT; R06349; 1; 16;; p. BS ACCAGCTCTATTGTTT; R06350; 1; 16;; p. BS TGTGTATCTAATTGGC; R06351; 1; 16;; p. BS ATTGATCCTAGTTCTC; R06352; 1; 16;; p. BS GTCTTGTCTATGTCTA; R06353; 1; 16;; p. BS AGCAAAACTATTTGAT; R06354; 1; 16;; p. BS GCGTGTGCTAGTTGTG; R06355; 1; 16;; p. BS TTGTTTATTATTTATT; R06356; 1; 16;; p. BS TTGTTTATTATTTTGT; R06357; 1; 16;; p. BS TACCTTTCTATTCTGT; R06358; 1; 16;; p. BS CACTGTCCTACACTTC; R06359; 1; 16;; p. XX CC compiled sequences, bound in vitro by bacterially expressed protein XX RN [1]; RE0002966. RX PUBMED: 8062827. RA von Kalm L., Crossgrove K., Von Seggern D., Guild G. M., Beckendorf S. K. RT The Broad-Complex directly controls a tissue-specific response to the steroid hormone ecdysone at the onset of Drosophila metamorphosis RL EMBO J. 13:3505-3516 (1994). XX // AC M00093 XX ID I$BRCZ3_01 XX DT 24.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA BR-C Z3 XX DE Broad-Complex Z3 XX BF T01479; BR-C Z3; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 3 2 3 4 N 02 6 1 3 2 A 03 4 3 3 2 N 04 3 1 1 7 T 05 9 2 1 0 A 06 10 0 0 2 A 07 12 0 0 0 A 08 0 10 1 1 C 09 4 0 0 8 T 10 10 0 0 2 A 11 6 0 4 2 R 12 6 1 2 3 A 13 4 3 2 3 N 14 2 3 5 2 N 15 5 3 1 3 N XX BA 12 binding sites within the Pig-1/Sgs-4 intergenic region XX BS ATTTATAGTAAAAGC; R06360; 1; 15;; p. BS TTGAAAACAATAGAG; R06361; 1; 15;; p. BS GACTCAACTAGGATC; R06362; 1; 15;; p. BS AGCAAAACTATTTGA; R06363; 1; 15;; p. BS CACACAACTAGCACA; R06364; 1; 15;; p. BS TAATAAACAAAATAA; R06365; 1; 15;; p. BS TAATAAACAAAACCA; R06366; 1; 15;; p. BS AAGTAAACTAAAGCT; R06367; 1; 15;; p. BS CCTCGAACTTGTCTT; R06368; 1; 15;; p. BS TGATAAACTTGTTGA; R06369; 1; 15;; p. BS GAAGAAACTAAAAGT; R06370; 1; 15;; p. BS GGGTATATAAAGCGC; R06371; 1; 15;; p. XX CC compiled sequences, bound in vitro by bacterially expressed protein XX RN [1]; RE0002966. RX PUBMED: 8062827. RA von Kalm L., Crossgrove K., Von Seggern D., Guild G. M., Beckendorf S. K. RT The Broad-Complex directly controls a tissue-specific response to the steroid hormone ecdysone at the onset of Drosophila metamorphosis RL EMBO J. 13:3505-3516 (1994). XX // AC M00094 XX ID I$BRCZ4_01 XX DT 24.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA BR-C Z4 XX DE Broad-Complex Z4 XX BF T01480; BR-C Z4; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 3 0 0 3 W 02 2 1 0 3 W 03 3 0 1 2 W 04 3 0 2 1 R 05 0 0 2 4 T 06 6 0 0 0 A 07 6 0 0 0 A 08 6 0 0 0 A 09 0 3 2 1 S 10 4 0 1 1 A 11 3 1 0 2 W 12 5 0 0 1 A 13 4 0 0 2 A XX BA 6 binding sites within the Pig-1/Sgs-4 intergenic region XX BS ATAATAAACAAAA; R06372; 1; 13;; p. BS ATAATAAACAAAA; R06373; 1; 13;; p. BS AATAGAAAGGTAT; R06374; 1; 13;; p. BS TAAGTAAACTAAA; R06375; 1; 13;; p. BS TCTGTAAATATTT; R06376; 1; 13;; p. BS TTGTGAAAGACAA; R06377; 1; 13;; p. XX CC compiled sequences, bound in vitro by bacterially expressed protein XX RN [1]; RE0002966. RX PUBMED: 8062827. RA von Kalm L., Crossgrove K., Von Seggern D., Guild G. M., Beckendorf S. K. RT The Broad-Complex directly controls a tissue-specific response to the steroid hormone ecdysone at the onset of Drosophila metamorphosis RL EMBO J. 13:3505-3516 (1994). XX // AC M00095 XX ID V$CDP_01 XX DT 24.04.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CDP XX DE cut-like homeodomain protein XX BF T00100; CUTL1; Species: human, Homo sapiens. XX P0 A C G T 01 1 16 0 1 C 02 0 17 0 1 C 03 17 0 0 1 A 04 17 1 0 0 A 05 0 0 0 18 T 06 18 0 0 0 A 07 17 0 0 1 A 08 0 3 0 15 T 09 0 14 2 2 C 10 5 0 13 0 G 11 14 0 1 3 A 12 2 1 1 14 T XX BA 18 selected binding sequences with anchored ATA trinucleotide XX BS ACTATAACTGAT; R06378; 2; 12;; p. BS CCAATAATCGAT; R06379; 1; 12;; p. BS CCAATAATCGAT; R06380; 6; 12;; p. BS CCAATAATGATA; R06381; 5; 12;; p. BS CCACTAATCAAT; R06382; 6; 12;; p. BS CTAATAACTAAT; R06383; 1; 12;; p. BS CCAATATCGATG; R06384; 7; 12;; p. BS CCAATAATCGAT; R06385; 1; 12;; p. BS CCAATAATCGAT; R06386; 1; 12;; p. BS TCAATAATCAGC; R06387; 6; 12;; p. BS CCAATAATCGAT; R06388; 7; 12;; p. BS CCAATAATCGAT; R06389; 1; 12;; p. BS CCAATAATCGTA; R06390; 5; 12;; p. BS CCAATAATCGAT; R06391; 1; 12;; p. BS CCAATAATCGAT; R06392; 1; 12;; p. BS CCAATAATCGAT; R06393; 1; 12;; p. BS CCAATAATCGAT; R06394; 7; 12;; p. BS CCAATAATCGAT; R06395; 7; 12;; p. XX CC 5 rounds of selection with bacterially expressed GST-CDP CR1 (cut repeat 1) fusion protein XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002967. RX PUBMED: 7914370. RA Aufiero B., Neufeld E. J., Orkin S. H. RT Sequence-specific DNA binding of individual cut repeats of the human CCAAT displacement/ cut homeodomain protein RL Proc. Natl. Acad. Sci. USA 91:7757-7761 (1994). XX // AC M00096 XX ID V$PBX1_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Pbx-1 XX DE Pbx-1 XX BF T01481; Pbx1a; Species: human, Homo sapiens. XX P0 A C G T 01 12 1 0 3 A 02 3 4 1 8 N 03 1 9 2 4 C 04 13 1 0 2 A 05 14 0 0 2 A 06 2 0 0 14 T 07 4 10 0 2 C 08 14 0 1 1 A 09 10 0 0 6 W XX BA 16 selected binding sequences XX BS ATCAATCAA; R06396; 16; 9;; p. BS ACTAATCAA; R06397; 15; 9;; p. BS ATCAATCAA; R06398; 20; 9;; p. BS TACAATCAA; R06399; 20; 9;; p. BS ATTAATCAT; R06400; 15; 9;; p. BS ATCAATTAT; R06401; 15; 9;; p. BS ATGTATCAA; R06402; 20; 9;; p. BS ACATATCAA; R06403; 20; 9;; p. BS TGCAATAAT; R06404; 14; 9;; p. BS ATCAATAAA; R06405; 8; 9;; p. BS TATCATCAT; R06406; 9; 9;; p. BS ATCATAATT; R06407; 12; 9;; p. BS ATCATATGA; R06408; 12; 9;; p. BS CCTAATCAA; R06409; 20; 9;; p. BS ACCAATAAA; R06410; 15; 9;; p. BS AAGAATCAT; R06411; 14; 9;; p. XX RN [1]; RE0002974. RX PUBMED: 8327485. RA van Dijk M. A., Voorhoeve M., Murre C. RT Pbx1 is converted into a transcriptional activator upon acquiring the N-terminal region of E2A in pre-B-cell acute lymphoblastoid leukemia RL Proc. Natl. Acad. Sci. USA 90:6061-6065 (1993). XX // AC M00097 XX ID V$PAX6_01 XX DT 24.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Pax-6 XX DE Pax-6 XX BF T00681; Pax-6; Species: mouse, Mus musculus. BF T01122; Pax-6; Species: human, Homo sapiens. XX P0 A C G T 01 15 7 6 10 N 02 21 9 3 10 N 03 10 9 10 18 N 04 8 14 9 16 N 05 3 2 4 38 T 06 2 0 1 44 T 07 3 29 1 14 C 08 40 5 1 1 A 09 3 39 0 5 C 10 1 0 44 2 G 11 1 36 7 2 C 12 23 2 1 21 W 13 1 4 0 42 T 14 2 13 26 3 G 15 40 1 6 0 A 16 14 11 15 7 N 17 2 4 3 37 T 18 1 0 20 25 K 19 13 17 9 4 N 20 14 8 4 6 N 21 4 12 3 9 N XX BA 47 selected binding sequences XX BS AAGTCAACCGTAAGAATTAAA; R06412; 5; 21;; p. BS AAGTGTTTCGCACCGTTTCAC; R06413; 4; 21;; p. BS TAGATTCACGGTCGGCTTGG; R06414; 6; 21;; p. BS TAAATTCACGCGTTGACTGA; R06415; 6; 21;; p. BS TCAATGCACTTTCTCGATGGC; R06416; 4; 21;; p. BS AATGTTACGCTTCACTTAAC; R06417; -1; 21;; p. BS AATGTTACGCTTCACTTAAC; R06418; -1; 21;; p. BS ATTTTTCCGCTTCAATTCAT; R06419; -1; 21;; p. BS TATTTCCGGTTNAATGAAT; R06420; -2; 21;; p. BS TATTTCCGGTTNAATGAAT; R06421; -2; 21;; p. BS TATTTCCGGTTNAATGAAT; R06422; -2; 21;; p. BS ACTCTTTACGCTTGAACGATT; R06423; 3; 21;; p. BS GCCTTACGGTTCACTGAGC; R06424; -2; 21;; p. BS CTGTTCACGCATGACTGGTT; R06425; -1; 21;; p. BS CAGTTGAAGCATGAAGGTTT; R06426; -1; 21;; p. BS GGTCTTCAAGNATAAATTTTA; R06427; 2; 21;; p. BS TTCGTTCAAGCATAAATTTTA; R06428; 2; 21;; p. BS CCTGAACGTAAATTAATTTCA; R06429; 3; 21;; p. BS AACCTTCATGCTTCAACTG; R06430; 7; 21;; p. BS AACCTTCATGGTTCAACTG; R06431; 7; 21;; p. BS TCTTGTTACGCCTCATTTG; R06432; 7; 21;; p. BS TTAATTTACGCTTCAGGT; R06433; 8; 21;; p. BS CAGTTTCACGCATGAGTGC; R06434; 7; 21;; p. BS CAGTTTCACGCATGAGTGC; R06435; 7; 21;; p. BS CAGTTTCACGCATGAGTGC; R06436; 7; 21;; p. BS CAGTTTCACGCATGAGTGC; R06437; 7; 21;; p. BS CAATTTCACGCATGAGTGC; R06438; 7; 21;; p. BS CAATTTCACGCATGAG; R06439; 10; 21;; p. BS GAATTTTACGCATGATTGA; R06440; 7; 21;; p. BS TTCGATCACGCATGGTTTCA; R06441; 6; 21;; p. BS TTCGATCACGCATGGTTTCA; R06442; 6; 21;; p. BS GCCGTTCACGCTTGACATCAG; R06443; 5; 21;; p. BS ATTCTTCACGCATGAGTTCCC; R06444; 5; 21;; p. BS ATTCTTCACGCATGAGTTCCC; R06445; 5; 21;; p. BS ATTCTTCACGCATGAGTTCCC; R06446; 5; 21;; p. BS ATTCTTCACGCATGAGTTCCC; R06447; 5; 21;; p. BS AAGTTTCACGCATGAGTAACC; R06448; 1; 21;; p. BS GCTCTTTACGCATGGTTTCAC; R06449; 4; 21;; p. BS GGCTTTCATGCATGACTTCAC; R06450; 5; 21;; p. BS AATGTTCACGCTCGAGGG; R06451; 8; 21;; p. BS AGTATTCACGGTTCAGTGA; R06452; 7; 21;; p. BS AATGTTCACGCTTCATTTGTT; R06453; 4; 21;; p. BS AAATTTCACGCCTGACTGGGT; R06454; 5; 21;; p. BS TTCCTTAACGCTTCACTGACG; R06455; 5; 21;; p. BS TTCCTTAACGCTTCACTGACG; R06456; 5; 21;; p. BS ACGCTTTATGCTTGACTGC; R06457; 7; 21;; p. BS GATCTTCACTCTTGAATG; R06458; 8; 21;; p. XX CC selection from random 25-mers bound to bacterially expressed GST-hPax-6 fusion protein XX RN [1]; RE0002969. RX PUBMED: 8132558. RA Epstein J., Cai J., Glaser T., Jepeal L., Maas R. RT Identification of a Pax paired domain recognition sequence and evidence for DNA-dependent conformational changes RL J. Biol. Chem. 269:8355-8361 (1994). XX // AC M00098 XX ID V$PAX2_01 XX DT 24.04.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Pax-2 XX DE Pax-2 XX BF T01823; Pax-2; Species: human, Homo sapiens. BF T00678; Pax-2a; Species: mouse, Mus musculus. XX P0 A C G T 01 7 10 4 6 N 02 5 10 7 9 N 03 7 8 2 15 N 04 8 10 6 8 N 05 8 1 19 4 G 06 5 2 0 25 T 07 1 20 3 8 C 08 21 3 3 5 A 09 6 13 3 10 N 10 3 3 20 6 G 11 3 13 7 7 N 12 14 1 11 4 R 13 4 5 3 18 T 14 4 3 14 8 K 15 18 5 2 4 A 16 3 8 5 9 N 17 1 5 7 6 N 18 3 3 5 2 N 19 3 3 2 2 N XX BA 32 selected binding sequences XX BS CACGTCACGCATGACTAC; R06459; -1; 19;; p. BS GTTATCACGCATGACTGC; R06460; -1; 19;; p. BS TAGTCACGCATGAGTAG; R06461; -2; 19;; p. BS ACATGTTTCGTTTGACTGC; R06462; 4; 19;; p. BS TTAATGAGCCATGACGTT; R06463; -1; 19;; p. BS ACTCGTCACGCATGA; R06464; 11; 19;; p. BS NCTCGTCACGCATGA; R06465; 11; 19;; p. BS TTTCGTCACGCATGA; R06466; 11; 19;; p. BS CTCCGTCACGCACCATTG; R06467; 8; 19;; p. BS AACGGTCACTGGATCCCAT; R06468; 6; 19;; p. BS AGAGGTCACGGGCCAGGG; R06469; 8; 19;; p. BS ATCGATCATGGCCTAGC; R06470; 9; 19;; p. BS AGTGGTGGATAACAACACA; R06471; 6; 19;; p. BS GCGTATTGTCGTTGAG; R06472; 10; 19;; p. BS CGCACCAGTCGTTGTG; R06473; 10; 19;; p. BS CACCATCAGTGATGCTC; R06474; 9; 19;; p. BS CACCATCAGTGATGCTC; R06475; 9; 19;; p. BS TGTTAACATGTGTGCA; R06476; 10; 19;; p. BS CGTTGTCTAATGTAAT; R06477; 10; 19;; p. BS CAATGTTTAATGAAGT; R06478; 10; 19;; p. BS ATTAGTTCATTGATACG; R06479; 9; 19;; p. BS CATAGATTTACGGTATGC; R06480; 8; 19;; p. BS GTCTGATAAGTGTTG; R06481; 11; 19;; p. BS CGTTTATAAGCGTTAAG; R06482; 9; 19;; p. BS GTAGTCTCTGCATTATG; R06483; 9; 19;; p. BS TCTGTTCATTCACACTTGA; R06484; 5; 19;; p. BS TCACTTCTCGATGCTTCTA; R06485; 5; 19;; p. BS CCTAGTCATGTGA; R06486; 13; 19;; p. BS CCACGTCATG; R06487; 16; 19;; p. BS TTTCGACACG; R06488; 16; 19;; p. BS TTGAGTCCCGAGTGTC; R06489; 10; 19;; p. BS GCCAATGATGCAGTTAGCG; R06490; 4; 19;; p. XX CC selection from random 25-mers bound to bacterially expressed GST-mPax-2 fusion protein XX RN [1]; RE0002969. RX PUBMED: 8132558. RA Epstein J., Cai J., Glaser T., Jepeal L., Maas R. RT Identification of a Pax paired domain recognition sequence and evidence for DNA-dependent conformational changes RL J. Biol. Chem. 269:8355-8361 (1994). XX // AC M00099 XX ID V$S8_01 XX DT 24.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA S8 XX DE S8 XX BF T01483; S8; Species: mouse, Mus musculus. XX P0 A C G T 01 6 2 2 7 W 02 12 7 4 15 N 03 11 7 13 14 N 04 25 5 7 10 A 05 14 14 12 10 N 06 6 20 5 20 Y 07 1 27 0 25 Y 08 52 2 3 0 A 09 59 0 0 0 A 10 0 0 0 59 T 11 0 0 0 59 T 12 59 0 0 0 A 13 16 3 14 8 N 14 1 10 3 5 C 15 2 6 4 3 N 16 4 1 2 5 N XX BA 59 selected binding sequences XX BS CAGTGCCAATTA; R06491; 1; 16;; p. BS GGACCTAATTAA; R06492; 1; 16; 1; p. BS TTATCCAATTAA; R06493; 1; 16; 1; p. BS AAGCCTTAATTA; R06494; 1; 16;; p. BS CGAACAATTAG; R06495; 1; 16; 1, 2; p. BS AATAGCCAATTA; R06496; 1; 16;; p. BS TAAACCTAATTA; R06497; 1; 16;; p. BS TAGTCATGATTA; R06498; 1; 16;; p. BS TTGACCTAATTA; R06499; 1; 16;; p. BS TAACTCAATTAG; R06500; 1; 16; 1; p. BS TATGTTAATTAT; R06501; 1; 16; 1; p. BS AATTAATTAATC; R06502; 1; 16; 1, 2, 3; p. BS ACTATTTCATTA; R06503; 1; 16;; p. BS AAGTTAATTAAT; R06504; 1; 16; 1, 2; p. BS AGTCTTCAATTA; R06505; 1; 16;; p. BS TATTGTTAATTA; R06506; 1; 16;; p. BS GCTAAGTAATTA; R06507; 1; 16;; p. BS TAGTGATAATTA; R06508; 1; 16;; p. BS TGAACCAATTAA; R06509; 1; 16; 1; p. BS CATTATAATTAT; R06510; 1; 16; 1; p. BS TTTATATCATTA; R06511; 1; 16;; p. BS TATACCCAATTA; R06512; 1; 16;; p. BS AGAGCCAATTAA; R06513; 1; 16; 1; p. BS CCAATTTGATTA; R06514; 1; 16;; p. BS TAATCAATTAGT; R06515; 1; 16; 1, 2; p. BS ATCAAATTAGGG; R06516; 1; 16; 1, 2, 3; p. BS TTAAGCAATTAA; R06517; 1; 16; 1; p. BS AATTAAACA; R06518; 1; 16; 1, 2, 3, 4, 5, 6, 7; p. BS AACCTTAATTA; R06519; 1; 16; 1; p. BS ATTAATCAATTA; R06520; 1; 16;; p. BS TTCTTAATTAGT; R06521; 1; 16; 1, 2; p. BS TTGATCAATTAA; R06522; 1; 16; 1; p. BS ATGCGCAATTAC; R06523; 1; 16; 1; p. BS CAATTATGTA; R06524; 1; 16; 1, 2, 3, 4, 5, 6; p. BS ATCAATTATCCA; R06525; 1; 16; 1, 2, 3, 4; p. BS GCACTCAATTAT; R06526; 1; 16; 1; p. BS CAATTAACTT; R06527; 1; 16; 1, 2, 3, 4, 5, 6; p. BS AATTAGCCT; R06528; 1; 16; 1, 2, 3, 4, 5, 6, 7; p. BS CCAGCCAATTAG; R06529; 1; 16; 1; p. BS CCCAATTAGGTT; R06530; 1; 16; 1, 2, 3, 4; p. BS CGACCTAATTAC; R06531; 1; 16; 1; p. BS GATAATTATCGC; R06532; 1; 16; 1, 2, 3, 4; p. BS ATTAACGG; R06533; 1; 16; 1, 2, 3, 4, 5, 6, 7, 8; p. BS ACCGCCAATTAA; R06534; 1; 16; 1; p. BS AATTAGCGT; R06535; 1; 16; 1, 2, 3, 4, 5, 6, 7; p. BS TTAATTACCCA; R06536; 1; 16; 1, 2, 3, 4, 5; p. BS TCGACTAATTAG; R06537; 1; 16; 1; p. BS CCAGTAATTAG; R06538; 1; 16; 1, 2; p. BS TAATGCGATTAT; R06539; 1; 16; 1; p. BS GGTACCAATTA; R06540; 1; 16; 1; p. BS AATTAGCCG; R06541; 1; 16; 1, 2, 3, 4, 5, 6, 7; p. BS TGATTCAATTAT; R06542; 1; 16; 1; p. BS CGGACTAATTAA; R06543; 1; 16; 1; p. BS AGCCCAATTAGC; R06544; 1; 16; 1, 2; p. BS ATTAGTAT; R06545; 1; 16; 1, 2, 3, 4, 5, 6, 7, 8; p. BS TAGGCCAATTAA; R06546; 1; 16; 1; p. BS ATCTGTCAATTA; R06547; 1; 16;; p. BS GTATTAATTAACA; R06548; 1; 16; 1, 2; p. BS GTAATCTAATTAA; R06549; 1; 16;; p. XX CC 3 rounds of selection from random dodekamers bound to the bacterially expressed S8 homeodomain XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002970. RX PUBMED: 7901837. RA de Jong R., van der Heijden J., Meijlink F. RT DNA-binding specificity of the S8 homeodomain RL Nucleic Acids Res. 21:4711-4720 (1993). XX // AC M00100 XX ID V$CDXA_01 XX DT 24.04.1995 (created); hiwi. DT 13.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA CdxA XX DE CdxA XX BF T01484; Cdx-1; Species: chick, Gallus gallus. XX P0 A C G T 01 9 6 2 2 M 02 4 0 1 14 T 03 1 0 0 18 T 04 4 0 2 13 T 05 11 3 4 1 A 06 4 3 2 10 T 07 6 3 9 1 R XX BA 19 selected binding sequences XX BS TATTGGA; R06550; 3; 7;; p. BS AATTATG; R06551; 12; 7;; p. BS CATGTTG; R06552; 13; 7;; p. BS CTTTATA; R06553; 6; 7;; p. BS GTTAAGT; R06554; 1; 7;; p. BS ATTTCCA; R06555; 8; 7;; p. BS GTTTATG; R06556; 11; 7;; p. BS AGTTATG; R06557; 9; 7;; p. BS ATTACCA; R06558; 14; 7;; p. BS CATTCTG; R06559; 5; 7;; p. BS CTTTGAG; R06560; 17; 7;; p. BS ATTTGAC; R06561; 6; 7;; p. BS ATTTATA; R06562; 9; 7;; p. BS ATTAATG; R06563; 14; 7;; p. BS ATTTAAG; R06564; 3; 7;; p. BS CTTTACC; R06565; 11; 7;; p. BS ATTGAAG; R06566; 5; 7;; p. BS CTTTATA; R06567; 6; 7;; p. BS TTAAGTC; R06568; 2; 7;; p. XX CC 3 rounds of selection from random 20-mers bound to bacterially expressed GST-CdxA fusion protein XX RN [1]; RE0002971. RX PUBMED: 7909943. RA Margalit Y., Yarus S., Shapira E., Gruenbaum Y., Fainsod A. RT Isolation and characterization of target sequences of the chicken CdxA homeobox gene RL Nucleic Acids Res. 21:4915-4922 (1993). XX // AC M00101 XX ID V$CDXA_02 XX DT 24.04.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CdxA XX DE CdxA XX BF T01484; Cdx-1; Species: chick, Gallus gallus. XX P0 A C G T 01 20 3 3 10 A 02 16 0 2 18 W 03 9 0 0 27 T 04 17 0 2 17 W 05 22 14 0 0 M 06 2 7 3 24 T 07 17 0 16 3 R XX BA 18 selected synthetic and genomic binding sequences XX CC 3 rounds of selection from random 20-mers bound to bacterially expressed GST-CdxA fusion protein plus sequences from 4 rounds of selection of genomic binding sites XX RN [1]; RE0002971. RX PUBMED: 7909943. RA Margalit Y., Yarus S., Shapira E., Gruenbaum Y., Fainsod A. RT Isolation and characterization of target sequences of the chicken CdxA homeobox gene RL Nucleic Acids Res. 21:4915-4922 (1993). XX // AC M00102 XX ID V$CDP_02 XX DT 24.04.1995 (created); hiwi. DT 29.10.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CDP XX DE transcriptional repressor CDP XX BF T00100; CUTL1; Species: human, Homo sapiens. XX P0 A C G T 01 33 8 17 42 N 02 46 11 10 33 W 03 19 8 29 44 N 04 100 0 0 0 A 05 0 0 0 100 T 06 4 77 0 19 C 07 0 0 100 0 G 08 100 0 0 0 A 09 0 0 0 100 T 10 15 25 2 58 T 11 90 2 6 2 A 12 19 9 25 46 N 13 18 32 2 48 Y 14 31 8 21 40 N 15 29 15 10 46 N XX BA 86 selected binding sequences XX CC 9 rounds of selection from random 15-mers bound to CDP overexpressed in COS cells; figures are percentages XX RN [1]; RE0002972. RX PUBMED: 7905452. RA Andres V., Chiara M. D., Mahdavi V. RT A new bipartite DNA-binding domain: cooperative interaction between the cut repeat and homeo domain of the cut homeo proteins RL Genes Dev. 8:245-257 (1994). XX // AC M00103 XX ID V$CLOX_01 XX DT 24.04.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Clox XX DE Clox XX BF T01485; Cutl; Species: dog, Canis canis. BF T01995; Cutl; Species: dog, Canis canis. XX P0 A C G T 01 27 11 21 41 N 02 45 16 12 27 N 03 17 6 24 53 T 04 100 0 0 0 A 05 0 0 0 100 T 06 1 73 0 26 C 07 0 0 100 0 G 08 100 0 0 0 A 09 0 0 0 100 T 10 8 20 2 70 T 11 86 2 4 8 A 12 18 11 23 48 N 13 11 32 6 51 Y 14 21 10 27 42 N 15 37 10 12 41 W XX BA 138 selected binding sequences XX CC 9 rounds of selection from random 15-mers bound to CDP overexpressed in COS cells; figures are percentages XX RN [1]; RE0002972. RX PUBMED: 7905452. RA Andres V., Chiara M. D., Mahdavi V. RT A new bipartite DNA-binding domain: cooperative interaction between the cut repeat and homeo domain of the cut homeo proteins RL Genes Dev. 8:245-257 (1994). XX // AC M00104 XX ID V$CDPCR1_01 XX DT 24.04.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CDP CR1 XX DE cut-like homeodomain protein XX BF T00100; CUTL1; Species: human, Homo sapiens. XX P0 A C G T 01 9 7 8 8 N 02 31 1 0 0 A 03 2 3 1 26 T 04 0 22 3 7 C 05 4 1 26 1 G 06 30 1 0 1 A 07 0 1 1 30 T 08 2 18 5 6 C 09 1 5 22 2 G 10 2 11 8 2 S XX BA 32 selected binding sequences XX BS GATCGATCGC; R06569; 3; 10;; p. BS AATCGATCGC; R06570; 3; 10;; p. BS GATCGATCGC; R06571; 3; 10;; p. BS TATCGATCGA; R06572; 4; 10;; p. BS GATCGATCC; R06573; 7; 10;; p. BS AATCGATCGG; R06574; 6; 10;; p. BS TATCGATCG; R06575; 7; 10;; p. BS CATCGATTGG; R06576; 2; 10;; p. BS GATCGATCGG; R06577; 4; 10;; p. BS CATCGATCCC; R06578; 3; 10;; p. BS GATCGATCCG; R06579; 2; 10;; p. BS TATCGATAG; R06580; 7; 10;; p. BS AATCGATCGG; R06581; 3; 10;; p. BS CAACGATGGT; R06582; 3; 10;; p. BS TAACGATTGT; R06583; 6; 10;; p. BS AATCAATCCC; R06584; 3; 10;; p. BS AATCAATGGG; R06585; 6; 10;; p. BS TACCGATTGG; R06586; 6; 10;; p. BS AATCGCTATC; R06587; 3; 10;; p. BS AATGGATCG; R06588; 7; 10;; p. BS TATTGATGGC; R06589; 6; 10;; p. BS GATTGATGG; R06590; 7; 10;; p. BS CATTGATTG; R06591; 7; 10;; p. BS CATTGATTGC; R06592; 3; 10;; p. BS CACTGATCGC; R06593; 3; 10;; p. BS GATCAACCTA; R06594; 2; 10;; p. BS AATTCATGGC; R06595; 6; 10;; p. BS ACTTGATC; R06596; 7; 10;; p. BS TACGGATTCC; R06597; 3; 10;; p. BS TATCGTG; R06598; 9; 10;; p. BS GATGTATCAG; R06599; 7; 10;; p. BS CAGCAATCG; R06600; 7; 10;; p. XX CC 5 rounds of selection from random 15-mers bound to bacterially expressed GST-CDP CR1 (cut repeat 1) fusion protein XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0002973. RX PUBMED: 7799919. RA Harada R., Berube G., Tamplin O. J., Denis-Larose C., Nepveu A. RT DNA-binding specificity of the cut repeats from the human cut-like protein RL Mol. Cell. Biol. 15:129-140 (1995). XX // AC M00105 XX ID V$CDPCR3_01 XX DT 24.04.1995 (created); hiwi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CDP CR3 XX DE cut-like homeodomain protein XX BF T00100; CUTL1; Species: human, Homo sapiens. XX P0 A C G T 01 1 21 1 0 C 02 20 2 1 0 A 03 1 20 2 0 C 04 6 14 4 0 C 05 12 2 9 1 R 06 21 0 3 0 A 07 1 3 3 17 T 08 17 2 4 1 A 09 5 7 4 8 N 10 6 4 11 3 N 11 0 1 0 23 T 12 24 0 0 0 A 13 0 0 0 24 T 14 0 8 9 7 B 15 0 0 24 0 G XX BA 24 selected binding sequences XX BS CACCAATCAGTATCG; R06601; 1; 15;; p. BS CACGAACGGTTATCG; R06602; 1; 15;; p. BS CACCAATATGTATCG; R06603; 1; 15;; p. BS CACCAATATATATCG; R06604; 1; 15;; p. BS CACCCAGATATATTG; R06605; 1; 15;; p. BS CACCGATACATATGG; R06606; 1; 15;; p. BS CCAATAGGTGTATCG; R06607; 1; 15;; p. BS CACAGATACGTATTG; R06608; 1; 15;; p. BS CAGCAGAACGTATTG; R06609; 1; 15;; p. BS CACCGATACATATCG; R06610; 1; 15;; p. BS CACCAATATGTATGG; R06611; 1; 15;; p. BS CACAGATGCGTATTG; R06612; 1; 15;; p. BS CACCAATAACCATGG; R06613; 1; 15;; p. BS ACCAAATAACTATGG; R06614; 1; 15;; p. BS CACACACGTGTATTG; R06615; 1; 15;; p. BS CACCAATCGGTATCG; R06616; 1; 15;; p. BS CACCGATATCTATGG; R06617; 1; 15;; p. BS CACCGACACGTATGG; R06618; 1; 15;; p. BS CACAGATTGTTATCG; R06619; 1; 15;; p. BS GGCGAATAAGTATGG; R06620; 1; 15;; p. BS CACCAATAACTATGG; R06621; 1; 15;; p. BS CAGGAGTACATATTG; R06622; 1; 15;; p. BS CACCGATAGTTATGG; R06623; 1; 15;; p. BS GGGGATATATTG; R06624; -3; 15;; p. XX CC 5 rounds of selection from random 15-mers bound to bacterially expressed GST-CDP CR3 (cut repeat 3) fusion protein XX RN [1]; RE0002973. RX PUBMED: 7799919. RA Harada R., Berube G., Tamplin O. J., Denis-Larose C., Nepveu A. RT DNA-binding specificity of the cut repeats from the human cut-like protein RL Mol. Cell. Biol. 15:129-140 (1995). XX // AC M00106 XX ID V$CDPCR3HD_01 XX DT 24.04.1995 (created); hiwi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA CDP CR3+HD XX DE cut-like homeodomain protein XX BF T00100; CUTL1; Species: human, Homo sapiens. XX P0 A C G T 01 8 11 12 2 N 02 28 0 4 1 A 03 3 0 0 30 T 04 3 15 3 12 Y 05 0 3 30 0 G 06 33 0 0 0 A 07 0 0 0 33 T 08 0 18 10 5 S 09 1 13 12 6 S 10 1 14 13 2 S XX BA 33 selected binding sequences XX BS CATCGATCCA; R06625; 2; 10;; p. BS GATCGATCCC; R06626; 4; 10;; p. BS GATCGATCCC; R06627; 4; 10;; p. BS CATCGATCCC; R06628; 3; 10;; p. BS GATCGATCTG; R06629; 1; 10;; p. BS GATCGATCGC; R06630; 2; 10;; p. BS AATCGATGTG; R06631; 6; 10;; p. BS CATCGATTCG; R06632; 3; 10;; p. BS AATCGATGGG; R06633; 5; 10;; p. BS TATCGATGC; R06634; 7; 10; 16; p. BS CATTGATCCC; R06635; 3; 10;; p. BS AATTGATCCC; R06636; 4; 10;; p. BS AATTGATCA; R06637; 7; 10; 16; p. BS CATTGATCCC; R06638; 3; 10;; p. BS CATTGATGGC; R06639; 3; 10;; p. BS CATTGATGTG; R06640; 6; 10;; p. BS GATTGATGGT; R06641; 6; 10;; p. BS AATTGATTGG; R06642; 6; 10;; p. BS TATTGATCTG; R06643; 5; 10;; p. BS CAATGATCCC; R06644; 3; 10;; p. BS GATGGATGTG; R06645; 3; 10;; p. BS AATGGATCCC; R06646; 4; 10;; p. BS CATAGATCCG; R06647; 3; 10;; p. BS GGTCGATGGT; R06648; 5; 10;; p. BS GGTCGATCGG; R06649; 3; 10;; p. BS GGTCGATC; R06650; 8; 10; 16, 17; p. BS CAATGATTGC; R06651; 3; 10;; p. BS CAATGATTGC; R06652; 3; 10;; p. BS GTTCGATGTG; R06653; 6; 10;; p. BS GATAGATTGG; R06654; 4; 10;; p. BS AATGCATCCC; R06655; 4; 10;; p. BS AATACATGGG; R06656; 6; 10;; p. BS GGTCCATCGC; R06657; 3; 10;; p. XX CC 5 rounds of selection from random 15-mers bound to bacterially expressed GST-CDP CR3 (cut repeat 3) plus HD (homeodomain) fusion protein XX RN [1]; RE0002973. RX PUBMED: 7799919. RA Harada R., Berube G., Tamplin O. J., Denis-Larose C., Nepveu A. RT DNA-binding specificity of the cut repeats from the human cut-like protein RL Mol. Cell. Biol. 15:129-140 (1995). XX // AC M00107 XX ID V$E2_01 XX DT 24.04.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA E2 XX DE papilloma virus regulator E2 XX BF T00205; E2; Species: BPV-1, bovine papilloma virus type 1. XX P0 A C G T 01 4 4 8 1 N 02 5 7 3 2 N 03 17 0 0 0 A 04 3 14 0 0 C 05 0 17 0 0 C 06 6 2 8 1 R 07 5 3 4 5 N 08 5 5 1 6 N 09 9 4 3 1 A 10 4 8 2 3 N 11 2 12 0 3 C 12 0 0 17 0 G 13 0 0 15 2 G 14 0 0 0 17 T 15 8 1 5 3 R 16 4 7 3 3 N XX BA 17 binding sites from BPV genome XX BS GAACCACACCCGGTAC; R06658; 1; 16;; p. BS GCACCGGCGGCGGTAG; R06659; 1; 16;; p. BS CGACCTATCCCGGTAA; R06660; 1; 16;; p. BS GGACCGAACACGTTAT; R06661; 1; 16;; p. BS GAACCAGAACTGGTAA; R06662; 1; 16;; p. BS CCACCAGTAATGGTGC; R06663; 1; 16;; p. BS GTACCGCCATCGGTGC; R06664; 1; 16;; p. BS GCACCGATATAGGTTT; R06665; 1; 16;; p. BS GTACCGTTGCCGGTCG; R06666; 1; 16;; p. BS AAACCGTCTTCGGTGC; R06667; 1; 16;; p. BS TCACCGAAACCGGTAA; R06668; 1; 16;; p. BS ACACCATCACCGTTTT; R06669; 1; 16;; p. BS CAAACGATAAAGGTAG; R06670; 1; 16;; p. BS AAAACAGCAGCGGTTC; R06671; 1; 16;; p. BS CCACCCCTCCTGGTAA; R06672; 1; 16;; p. BS AGAACCTAAACGGTGC; R06673; 1; 16;; p. BS GCACCATGGCCGGTGC; R06674; 1; 16;; p. XX CC compiled sequences XX RN [1]; RE0000594. RX PUBMED: 2542129. RA Li R., Knight J., Bream G., Stenlund A., Botchan M. RT Specific recognition nucleotides and their DNA context determine the affinity of E2 protein for 17 binding sites in the BPV-1 genome RL Genes Dev. 3:510-526 (1989). XX // AC M00108 XX ID V$NRF2_01 XX DT 05.05.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA NRF-2 XX DE nuclear respiratory factor 2 XX BF T01198; NRF-2; Species: monkey, Cercopithecus aethiops. BF T01199; NRF-2; Species: rat, Rattus norvegicus. XX P0 A C G T 01 5 1 1 0 A 02 1 5 1 0 C 03 1 6 0 0 C 04 0 0 7 0 G 05 0 0 7 0 G 06 7 0 0 0 A 07 7 0 0 0 A 08 0 0 7 0 G 09 3 1 1 2 N 10 0 2 4 1 G XX BA 7 binding sites from 3 genes XX BS ACCGGAAGAG; R06675; 1; 10;; p. BS ACCGGAAGAG; R06676; 1; 10;; p. BS GCAGGAAGCG; R06677; 1; 10;; p. BS AGCGGAAGAC; R06678; 1; 10;; p. BS AACGGAAGTC; R06679; 1; 10;; p. BS CCCGGAAGTG; R06680; 1; 10;; p. BS ACCGGAAGGT; R06681; 1; 10;; p. XX CC compiled sequences XX RN [1]; RE0000801. RX PUBMED: 8383622. RA Virbasius J. V., Virbasius C.-M. A., Scarpulla R. C. RT Identity of GABP with NRF-2, a multisubunit activator of cytochrome oxidase expression, reveals a cellular role for an Ets domain activator of viral promoters RL Genes Dev. 7:380-392 (1993). XX // AC M00109 XX ID V$CEBPB_01 XX DT 05.05.1995 (created); ewi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA C/EBPbeta XX DE CCAAT/enhancer binding protein beta XX BF T00459; C/EBPbeta(LAP); Species: rat, Rattus norvegicus. BF T00017; C/EBPbeta(p35); Species: mouse, Mus musculus. BF T05501; C/EBPbeta(p35); Species: mouse, Mus musculus. BF T00581; NF-IL6-2; Species: human, Homo sapiens. XX P0 A C G T 01 9 1 8 3 R 02 5 3 7 6 N 03 9 3 8 1 R 04 1 0 0 20 T 05 1 0 7 13 K 06 7 0 8 6 D 07 5 2 5 9 N 08 0 0 21 0 G 09 8 9 0 4 M 10 20 1 0 0 A 11 21 0 0 0 A 12 3 1 6 11 K 13 5 6 7 3 N 14 3 3 6 9 N XX BA 21 binding sites from 14 cellular genes and 3 viral genomes XX BS AGATTGTGCAATGT; R06682; 1; 14;; p. BS ACATTGTGCAATCT; R06683; 1; 14;; p. BS TGATTTTGTAATGG; R06684; 1; 14;; p. BS AGATTGAGCAATCT; R06685; 1; 14;; p. BS GTCTTAAGCAAAGC; R06686; 1; 14;; p. BS GTATTAGGACATGT; R06687; 1; 14;; p. BS ATGTTGAGTAAGAT; R06688; 1; 14;; p. BS GTGTGAAGCAAGAG; R06689; 1; 14;; p. BS GAATTACGAAATGG; R06690; 1; 14;; p. BS AAGTTGTGCAATGG; R06691; 1; 14;; p. BS TAGTGGCGCAAACT; R06692; 1; 14;; p. BS CAGTGATGTAATCA; R06693; 1; 14;; p. BS AAGTTGAGAAATTT; R06694; 1; 14;; p. BS GGCTGAGGAAATAC; R06695; 1; 14;; p. BS ACAAGTTGCAACAT; R06696; 1; 14;; p. BS GGATTTGGAAAGTT; R06697; 1; 14;; p. BS GTTTTGTGAAATCG; R06698; 1; 14;; p. BS ACATAATGAAAAGA; R06699; 1; 14;; p. BS GGGTGTGGAAAGTC; R06700; 1; 14;; p. BS TGGTTTTGCAAGAG; R06701; 1; 14;; p. BS ATCTGTGGTAAGCA; R06702; 1; 14;; p. XX CC compiled sequences XX RN [1]; RE0000469. RX PUBMED: 2112087. RA Akira S., Isshiki H., Sugita T., Tanabe O., Kinoshita S., Nishio Y., Nakajima T., Hirano T., Kishimoto T. RT A nuclear factor for IL-6 expression (NF-IL6) is a member of a C/EBP family RL EMBO J. 9:1897-1906 (1990). XX // AC M00110 XX ID I$ELF1_01 XX DT 05.05.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA Elf-1 XX DE CP2 (human, mouse) XX BF T01019; Elf-1; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 1 1 1 2 N 02 1 1 2 1 N 03 1 0 2 2 K 04 2 0 1 2 W 05 2 1 1 1 N 06 0 2 1 2 Y 07 0 0 4 1 G 08 0 0 5 0 G 09 0 0 0 5 T 10 1 0 1 3 T 11 0 0 0 5 T 12 1 1 0 3 T 13 1 0 3 1 G 14 2 1 0 2 W 15 3 1 1 0 A 16 1 1 1 2 N XX BA 5 binding sites from 2 genes XX BS TGATTCGGTATCGAAA; R06703; 1; 16;; p. BS GGGAGCTGTTTTTTCC; R06704; 1; 16;; p. BS TCGGATGGTTTTATAT; R06705; 1; 16;; p. BS AATAAGGGTGTAGAGT; R06706; 1; 16;; p. BS CTTTCTGGTTTTGCAG; R06707; 1; 16;; p. XX CC compiled sequences XX RN [1]; RE0000599. RX PUBMED: 2606344. RA Dynlacht B. D., Attardi L. D., Admon A., Freeman M., Tjian R. RT Functional analysis of NTF-1, a developmentally regulated Drosophila transcription factor that binds neuronal cis elements RL Genes Dev. 3:1677-1688 (1989). XX // AC M00111 XX ID I$CF1_01 XX DT 11.05.1995 (created); ewi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA CF1 / USP XX DE chorion factor 1 XX BF T00117; CF1; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 15 4 80 1 G 02 25 6 66 3 G 03 1 3 93 3 G 04 2 4 90 4 G 05 1 0 7 92 T 06 0 84 10 6 C 07 80 5 14 1 A 08 11 47 11 31 Y 09 12 29 49 10 S XX BA 71 selected binding sequences XX CC 3 rounds of selection and amplification from random 20-mers; figures are percentages XX RN [1]; RE0003005. RX PUBMED: 1280827. RA Christianson A. M. K., King D. L., Hatzivassiliou E., Casas J. E., Hallenbeck P. L., Nikodem V. M., Mitsialis S. A., Kafatos F. C. RT DNA binding and heteromerization of the Drosophila transcription factor chorion factor 1/ultraspiracle RL Proc. Natl. Acad. Sci. USA 89:11503-11507 (1992). XX // AC M00112 XX ID I$CF1_02 XX DT 11.05.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CF1 / USP XX DE chorion factor 1 XX BF T00117; CF1; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 1 1 36 0 G 02 2 0 36 0 G 03 0 0 38 0 G 04 0 0 38 0 G 05 0 0 0 38 T 06 0 36 1 1 C 07 36 0 2 0 A 08 4 25 3 6 C 09 5 10 20 3 G XX BA 38 selected binding sequences XX BS GGGGTCACG; R10931; 1; 9;; p. BS GGGGTCACG; R10932; 2; 9;; p. BS GGGGTCACG; R10933; 1; 9;; p. BS GGGGTCAGC; R10934; 4; 9;; p. BS GGGGTCACG; R10935; 1; 9;; p. BS GGGGTCACG; R10936; 5; 9;; p. BS GGGGTCACG; R10937; 1; 9;; p. BS GGGGTCACG; R10938; 1; 9;; p. BS GGGGTCACG; R10939; 3; 9;; p. BS GGGGTCACG; R10940; 7; 9;; p. BS GGGGTCACG; R10941; 3; 9;; p. BS GGGGTCACG; R10942; 10; 9;; p. BS GGGGTCACG; R10943; 10; 9;; p. BS GGGGTCACG; R10944; 1; 9;; p. BS GGGGTCACG; R10945; 1; 9;; p. BS GGGGTCACG; R10946; 1; 9;; p. BS GGGGTCACT; R10947; 1; 9;; p. BS GGGGTCAGG; R10948; 11; 9;; p. BS GGGGTCACC; R10949; 1; 9;; p. BS GGGGTCATC; R10950; 12; 9;; p. BS GGGGTCAAG; R10951; 1; 9;; p. BS GGGGTCACA; R10952; 1; 9;; p. BS GGGGTCACC; R10953; 11; 9;; p. BS GGGGTCAAG; R10954; 1; 9;; p. BS GGGGTCACC; R10955; 3; 9;; p. BS GGGGTCACA; R10956; 1; 9;; p. BS GGGGTCACC; R10957; 3; 9;; p. BS GGGGTCATG; R10958; 10; 9;; p. BS GGGGTCAAC; R10959; 1; 9;; p. BS GGGGTCATC; R10960; 1; 9;; p. BS GGGGTGACA; R10961; 1; 9;; p. BS GGGGTCAGC; R10962; 2; 9;; p. BS GGGGTCATC; R10963; 1; 9;; p. BS GGGGTCATT; R10964; 1; 9;; p. BS GGGGTCAAT; R10965; 1; 9;; p. BS AAGGTCACG; R10966; 7; 9;; p. BS GGGGTTGTA; R10967; 1; 9;; p. BS CAGGTCGCA; R10968; 2; 9;; p. XX CC 5 rounds of selection and amplification from random 20-mers; absolute frequencies stated XX RN [1]; RE0003005. RX PUBMED: 1280827. RA Christianson A. M. K., King D. L., Hatzivassiliou E., Casas J. E., Hallenbeck P. L., Nikodem V. M., Mitsialis S. A., Kafatos F. C. RT DNA binding and heteromerization of the Drosophila transcription factor chorion factor 1/ultraspiracle RL Proc. Natl. Acad. Sci. USA 89:11503-11507 (1992). XX // AC M00113 XX ID V$CREB_02 XX DT 12.05.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CREB XX DE cAMP-responsive element binding protein XX BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T00166; deltaCREB; Species: human, Homo sapiens. BF T00165; deltaCREB; Species: rat, Rattus norvegicus. BF T01311; deltaCREB; Species: mouse, Mus musculus. XX P0 A C G T 01 2 5 4 5 N 02 1 3 6 6 N 03 2 2 12 0 G 04 5 1 7 3 N 05 0 0 0 16 T 06 0 0 15 1 G 07 16 0 0 0 A 08 0 15 1 0 C 09 0 0 15 1 G 10 1 5 0 10 T 11 4 7 3 2 N 12 5 6 3 2 N XX BA 16 selected binding sequences XX BS TTGATGACGCAA; R06708; 6; 12;; p. BS ATGTTGACGCCA; R06709; 13; 12;; p. BS CGGGTGACGCCA; R06710; 13; 12;; p. BS GCGATGACGTCC; R06711; 11; 12;; p. BS GGGATGACGCGT; R06712; 5; 12;; p. BS TGGGTGACGACA; R06713; 6; 12;; p. BS TGGATGACGTAG; R06714; 12; 12;; p. BS CGGGTGACGTTC; R06715; 10; 12;; p. BS CCGCTTACGTAG; R06716; 12; 12;; p. BS CTGATGACGCGA; R06717; 5; 12;; p. BS CGGGTGACGTGT; R06718; 9; 12;; p. BS TAGTTGAGTTCC; R06719; 12; 12;; p. BS GCAGTGACGTAC; R06720; 11; 12;; p. BS GTAGTGACGTCG; R06721; 10; 12;; p. BS ATCTTGACGTCC; R06722; 3; 12;; p. BS TTCGTGACGTTC; R06723; 6; 12;; p. XX CC 5 cycles of selection and amplification from random 15-mers XX RN [1]; RE0003007. RX PUBMED: 8264613. RA Paca-Uccaralertkun S., Zhao L.-J., Adya N., Cross J. V., Cullen B. R., Boros I. M., Giam C.-Z. RT In vitro selection of DNA elements highly responsive to the human T-cell lymphotropic virus type I transcriptional activator, Tax RL Mol. Cell. Biol. 14:456-462 (1994). XX // AC M00114 XX ID V$TAXCREB_01 XX DT 12.05.1995 (created); ewi. DT 12.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Tax/CREB XX DE Tax/CREB complex XX BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T00166; deltaCREB; Species: human, Homo sapiens. BF T00165; deltaCREB; Species: rat, Rattus norvegicus. BF T01311; deltaCREB; Species: mouse, Mus musculus. BF T00793; Tax; Species: HTLV-I, human T-cell lymphotropic virus type I. XX P0 A C G T 01 2 2 9 4 G 02 2 2 10 3 G 03 0 2 14 1 G 04 0 2 15 0 G 05 1 0 16 0 G 06 1 2 4 10 T 07 0 0 0 17 T 08 0 0 14 3 G 09 17 0 0 0 A 10 0 17 0 0 C 11 0 0 17 0 G 12 1 7 2 7 Y 13 11 5 1 0 A 14 4 3 5 5 N 15 9 2 3 3 A XX BA 17 different selected binding sequences XX BS GGGGGTTGACGTAGA; R06724; 10; 15;; p. BS GGGCGGTTACGTCCA; R06725; 10; 15;; p. BS GGGGGGTGACGGAGC; R06726; 7; 15;; p. BS GGGGGTTGACGTAGA; R06727; 9; 15;; p. BS GGGGGTTGACGTAGA; R06728; 10; 15;; p. BS GGTGGTTGACGCCAT; R06729; 11; 15;; p. BS TGGGGGTTACGCATA; R06730; 4; 15;; p. BS GCGGGTTGACGCCAT; R06731; 11; 15;; p. BS AGGGGTTGACGCCAT; R06732; 11; 15;; p. BS GTGGGTTGACGTACG; R06733; 7; 15;; p. BS TGGCGGTGACGGGTA; R06734; 4; 15;; p. BS CTGGGATTACGTATC; R06735; 5; 15;; p. BS TAGGGTTGACGTACA; R06736; 6; 15;; p. BS CGGGACTGACGCATG; R06737; 7; 15;; p. BS ATGGGTTGACGCATG; R06738; 7; 15;; p. BS GACGGTTGACGCAGA; R06739; 10; 15;; p. BS TCCGGCTGACGACAA; R06740; 6; 15;; p. XX CC 5 cycles of selection and amplification from random 15-mers using bacterially expressed Tax and CREB; only distinct sequences were counted; consensus G XX RN [1]; RE0003007. RX PUBMED: 8264613. RA Paca-Uccaralertkun S., Zhao L.-J., Adya N., Cross J. V., Cullen B. R., Boros I. M., Giam C.-Z. RT In vitro selection of DNA elements highly responsive to the human T-cell lymphotropic virus type I transcriptional activator, Tax RL Mol. Cell. Biol. 14:456-462 (1994). XX // AC M00115 XX ID V$TAXCREB_02 XX DT 12.05.1995 (created); ewi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Tax/CREB XX DE Tax/CREB complex XX BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T00166; deltaCREB; Species: human, Homo sapiens. BF T00165; deltaCREB; Species: rat, Rattus norvegicus. BF T01311; deltaCREB; Species: mouse, Mus musculus. BF T00793; Tax; Species: HTLV-I, human T-cell lymphotropic virus type I. XX P0 A C G T 01 3 0 2 0 R 02 0 0 0 5 T 03 0 0 5 0 G 04 5 0 0 0 A 05 0 5 0 0 C 06 0 0 5 0 G 07 0 5 0 0 C 08 5 0 0 0 A 09 0 1 0 4 T 10 4 1 0 0 A 11 0 3 0 2 Y 12 0 5 0 0 C 13 0 5 0 0 C 14 0 4 0 1 C 15 1 4 0 0 C XX BA 5 different selected binding sequences XX BS ATGACGCATATCCCC; R06741; 7; 15;; p. BS ATGACGCATACCCCC; R06742; 7; 15;; p. BS GTGACGCACCCCCCC; R06743; 8; 15;; p. BS ATGACGCATATCCCC; R06744; 8; 15;; p. BS GTGACGCATACCCTA; R06745; 8; 15;; p. XX CC 5 cycles of selection and amplification from random 15-mers using bacterially expressed Tax and CREB; only distinct sequences were counted; consensus C XX RN [1]; RE0003007. RX PUBMED: 8264613. RA Paca-Uccaralertkun S., Zhao L.-J., Adya N., Cross J. V., Cullen B. R., Boros I. M., Giam C.-Z. RT In vitro selection of DNA elements highly responsive to the human T-cell lymphotropic virus type I transcriptional activator, Tax RL Mol. Cell. Biol. 14:456-462 (1994). XX // AC M00116 XX ID V$CEBPA_01 XX DT 16.05.1995 (created); ewi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA C/EBPalpha XX DE CCAAT/enhancer binding protein alpha XX BF T01388; C/EBP; Species: clawed frog, Xenopus laevis. BF T00104; C/EBPalpha; Species: mouse, Mus musculus. BF T00108; C/EBPalpha; Species: rat, Rattus norvegicus. BF T00105; C/EBPalpha; Species: human, Homo sapiens. BF T00107; C/EBPalpha; Species: chick, Gallus gallus. XX P0 A C G T 01 16 10 7 10 N 02 9 10 11 13 N 03 23 5 8 7 A 04 0 0 0 43 T 05 0 0 1 42 T 06 14 2 25 2 R 07 4 28 8 3 C 08 13 11 8 11 N 09 15 13 2 13 N 10 29 9 2 3 A 11 30 6 5 2 A 12 11 11 9 12 N 13 10 17 7 9 N 14 16 8 7 12 N XX BA 43 binding sites from 29 genes expressed in the liver but not increasing during acute phase response XX BS CCATTACAAAATCA; R06746; 1; 14;; n. BS GCGTTATAGCATCC; R06747; 1; 14;; n. BS ATGTTAAGTAGTGT; R06748; 1; 14;; n. BS TGCTTGAATAACAC; R06749; 1; 14;; n. BS ATGTTACACAAGCA; R06750; 1; 14;; n. BS ATATTGCACAGATA; R06751; 1; 14;; n. BS GTGTTATATGAGCA; R06752; 1; 14;; n. BS TGATTACAAAGATT; R06753; 1; 14;; n. BS AAATTGCCTAACTT; R06754; 1; 14;; n. BS TGTTTGCTCACTCA; R06755; 1; 14;; n. BS TATTTGCCCAGCCC; R06756; 1; 14;; n. BS CCATTTCTCCAACT; R06757; 1; 14;; n. BS ATATTGGCTAATCA; R06758; 1; 14;; n. BS CTGTTGCATTCAAG; R06759; 1; 14;; n. BS GGATTGCAAAAGGT; R06760; 1; 14;; n. BS GTTTTCCTCACCCT; R06761; 1; 14;; n. BS TGCTTGCAAAAGAG; R06762; 1; 14;; n. BS CCATTACCAAATCC; R06763; 1; 14;; n. BS AAGTTGCAACATAA; R06764; 1; 14;; n. BS GCGTTGCGCAGCAT; R06765; 1; 14;; n. BS TAATTGCTTAATAT; R06766; 1; 14;; n. BS TGTTTGGTCAAGTG; R06767; 1; 14;; n. BS AGATTGTGAAAGTG; R06768; 1; 14;; n. BS ATGTTGCGTGCATC; R06769; 1; 14;; n. BS ACCTTGCCCCAGTG; R06770; 1; 14;; n. BS ACCTTACTGCAGGA; R06771; 1; 14;; n. BS CCATGACCACATCA; R06772; 1; 14;; n. BS ACATTGCCCAACTC; R06773; 1; 14;; n. BS CCATTTCTAAAACA; R06774; 1; 14;; n. BS TGTTTGCTTAAAGC; R06775; 1; 14;; n. BS TTATTAGCACACCA; R06776; 1; 14;; n. BS AAATTGATTTCAGG; R06777; 1; 14;; n. BS AAATTGATTTCAAA; R06778; 1; 14;; n. BS GAATTGCGTAAAAG; R06779; 1; 14;; n. BS ATATTGGGAAACAA; R06780; 1; 14;; n. BS CTCTTAGGAAATGT; R06781; 1; 14;; n. BS CAATTGGCCAATCA; R06782; 1; 14;; n. BS GTATTAGGACATGT; R06783; 1; 14;; n. BS AGATTGGTAAACCT; R06784; 1; 14;; n. BS CTATTGCAAATAAA; R06785; 1; 14;; n. BS AGTTTCCCCATGTC; R06786; 1; 14;; n. BS CAATTACCTCACCA; R06787; 1; 14;; n. BS TGTTTACACAACCT; R06788; 1; 14;; n. XX CC compiled sequences XX RN [1]; RE0003008. RA Johnson P. F., Williams S. C. RT CCAAT/enhancer binding (C/EBP) proteins RL Liver Gene Expression, F. Tronche and M. Yaniv (eds.), R. G. Landes Comp., Austin 1994 0:231-258 (1994). XX // AC M00117 XX ID V$CEBPB_02 XX DT 16.05.1995 (created); ewi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA C/EBPbeta XX DE CCAAT/enhancer binding protein beta XX BF T00459; C/EBPbeta(LAP); Species: rat, Rattus norvegicus. BF T00017; C/EBPbeta(p35); Species: mouse, Mus musculus. BF T05501; C/EBPbeta(p35); Species: mouse, Mus musculus. BF T00581; NF-IL6-2; Species: human, Homo sapiens. XX P0 A C G T 01 6 2 4 5 N 02 2 2 6 7 K 03 6 4 5 2 N 04 0 0 1 16 T 05 0 0 0 17 T 06 3 0 13 1 G 07 1 14 2 0 C 08 6 2 6 3 N 09 4 8 0 5 Y 10 12 4 1 0 A 11 15 1 0 1 A 12 2 7 2 6 Y 13 3 4 2 8 N 14 4 5 5 3 N XX BA 17 binding sites from 14 genes expressed during acute phase response XX BS GTCTTGCGCAAAAT; R06789; 1; 14;; n. BS TATGTGCGCACCTG; R06790; 1; 14;; n. BS AGGTTGGGAAATCC; R06791; 1; 14;; n. BS ATGTTGCACAAGAG; R06792; 1; 14;; n. BS GTATTGAGAAATCT; R06793; 1; 14;; n. BS GAGTTGCGCCACTA; R06794; 1; 14;; n. BS ATGTTGCTTAAATG; R06795; 1; 14;; n. BS TGATTACATCACTG; R06796; 1; 14;; n. BS TGTTTGCACAACGT; R06797; 1; 14;; n. BS CTCTTGCTTCATAC; R06798; 1; 14;; n. BS ACATTGCCCAACTC; R06799; 1; 14;; n. BS CTCTTAGGAAATGC; R06800; 1; 14;; n. BS TGATTGCAAAACTA; R06801; 1; 14;; n. BS TCATTTCCTGTGCA; R06802; 1; 14;; n. BS AGGTTACACAACTG; R06803; 1; 14;; n. BS ATCTTGCATAATCC; R06804; 1; 14;; n. BS GGATTGCTCCATTA; R06805; 1; 14;; n. XX CC compiled sequences XX RN [1]; RE0003008. RA Johnson P. F., Williams S. C. RT CCAAT/enhancer binding (C/EBP) proteins RL Liver Gene Expression, F. Tronche and M. Yaniv (eds.), R. G. Landes Comp., Austin 1994 0:231-258 (1994). XX // AC M00118 XX ID V$MYCMAX_01 XX DT 18.05.1995 (created); ewi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA c-Myc:Max XX DE c-Myc:Max heterodimer XX BF T00140; c-Myc; Species: human, Homo sapiens. BF T00141; c-Myc; Species: chick, Gallus gallus. BF T00142; c-Myc; Species: rat, Rattus norvegicus. BF T00143; c-Myc; Species: mouse, Mus musculus. BF T00489; Max1; Species: human, Homo sapiens. XX P0 A C G T 01 25 31 13 31 N 02 28 7 47 18 N 03 70 3 21 6 A 04 10 69 19 2 C 05 0 100 0 0 C 06 100 0 0 0 A 07 0 100 0 0 C 08 0 0 100 0 G 09 0 0 0 100 T 10 0 0 100 0 G 11 2 19 69 10 G 12 6 21 3 70 T 13 18 47 7 28 N 14 31 13 31 25 N XX BA 34 selected binding sequences for Myc/Max dimers XX CC cumulative analysis of bound sequences after 7 and 8 rounds of selection and amplification; only sequences with CACGTG core were taken, the flanking regions were analysed as 68 NNNNCAG half-sites and are mirrored for this matrix; figures are percentages XX RN [1]; RE0002937. RX PUBMED: 8265351. RA Solomon D. L. C., Amati B., Land H. RT Distinct DNA binding preferences for the c-Myc/Max and Max/Max dimers RL Nucleic Acids Res. 21:5372-5376 (1993). XX // AC M00119 XX ID V$MAX_01 XX DT 18.05.1995 (created); ewi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Max XX DE Max XX BF T00489; Max1; Species: human, Homo sapiens. XX P0 A C G T 01 38 16 26 20 N 02 42 10 33 15 N 03 62 3 30 5 A 04 30 32 15 23 N 05 0 100 0 0 C 06 100 0 0 0 A 07 0 100 0 0 C 08 0 0 100 0 G 09 0 0 0 100 T 10 0 0 100 0 G 11 23 15 32 30 N 12 5 30 3 62 T 13 15 33 10 42 N 14 20 26 16 38 N XX BA 37 selected binding sequences XX CC cumulative analysis of bound sequences after 4 and 5 rounds of selection and amplification; only sequences with CACGTG core were taken, the flanking regions were analysed as 74 NNNNCAG half-sites and are mirrored for this matrix; figures are percentages XX RN [1]; RE0002937. RX PUBMED: 8265351. RA Solomon D. L. C., Amati B., Land H. RT Distinct DNA binding preferences for the c-Myc/Max and Max/Max dimers RL Nucleic Acids Res. 21:5372-5376 (1993). XX // AC M00120 XX ID I$DL_02 XX DT 18.05.1995 (created); ewi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA dl XX DE dorsal XX BF T00196; Dl; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 3 4 0 5 H 02 0 3 9 0 G 03 5 2 5 0 R 04 0 0 12 0 G 05 12 0 0 0 A 06 11 0 1 0 A 07 12 0 0 0 A 08 11 0 0 1 A 09 3 4 1 4 N 10 0 8 1 3 C 11 4 5 3 0 V XX BA 12 binding sites from 2 genes XX BS CGAGAAAATCG; R06806; 1; 11;; p. BS CGAGAAAATCG; R06807; 1; 11;; p. BS AGAGAAAACCC; R06808; 1; 11;; p. BS AGCGAAAAGTC; R06809; 1; 11;; p. BS ACAGAAAAATC; R06810; 1; 11;; p. BS CCAGAAAAATA; R06811; 1; 11;; p. BS TCCGAAAATCG; R06812; 1; 11;; p. BS TGGGAAAATGC; R06813; 1; 11;; p. BS CGGGAAAACCA; R06814; 1; 11;; p. BS TGGGAAATCCA; R06815; 1; 11;; p. BS TGGGAGAAACC; R06816; 1; 11;; p. BS TGGGAAAACCA; R06817; 1; 11;; p. XX CC compiled sequences XX RN [1]; RE0000246. RX PUBMED: 1648449. RA Thisse C., Perrin-Schmitt F., Stoetzel C., Thisse B. RT Sequence-specific transactivation of the Drosophila twist gene by the dorsal gene product RL Cell 65:1191-1201 (1991). XX // AC M00121 XX ID V$USF_01 XX DT 19.05.1995 (created); ewi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA USF XX DE upstream stimulating factor XX BF T00870; USF; Species: hamster. BF T00872; USF; Species: chick, Gallus gallus. BF T00876; USF; Species: duck, Cairina moschata. BF T00875; USF-1; Species: rat, Rattus norvegicus. BF T00877; USF-1; Species: mouse, Mus musculus. BF T00874; USF1; Species: human, Homo sapiens. XX P0 A C G T 01 13 7 11 5 N 02 7 6 17 10 N 03 19 3 17 3 R 04 6 16 4 20 Y 05 0 58 0 0 C 06 56 1 1 0 A 07 0 55 0 3 C 08 3 0 55 0 G 09 0 1 1 56 T 10 0 0 58 0 G 11 20 4 16 6 R 12 3 17 3 19 Y 13 10 17 6 7 N 14 5 11 7 13 N XX BA 58 selected half-site sequences XX CC 2 cycles of binding selection and amplification in the presence of Mg2+ ions using purified USF (HeLa cells); figures have been mirrored to obtain the complete matrix XX RN [1]; RE0002936. RX PUBMED: 8052536. RA Bendall A. J., Molloy P. L. RT Base preference for DNA binding by the bHLH-Zip protein USF: effects of magnesiumchloride on specificity and comparison with binding of Myc family members RL Nucleic Acids Res. 22:2801-2810 (1994). XX // AC M00122 XX ID V$USF_02 XX DT 19.05.1995 (created); ewi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA USF XX DE upstream stimulating factor XX BF T00870; USF; Species: hamster. BF T00872; USF; Species: chick, Gallus gallus. BF T00876; USF; Species: duck, Cairina moschata. BF T00875; USF-1; Species: rat, Rattus norvegicus. BF T00877; USF-1; Species: mouse, Mus musculus. BF T00874; USF1; Species: human, Homo sapiens. XX P0 A C G T 01 17 7 9 15 N 02 16 7 15 16 N 03 27 7 22 2 R 04 15 17 10 25 N 05 0 74 1 0 C 06 69 2 3 4 A 07 1 52 13 15 C 08 15 13 52 1 G 09 4 3 2 69 T 10 0 1 74 0 G 11 25 10 17 15 N 12 2 22 7 27 Y 13 16 15 7 16 N 14 15 9 7 17 N XX BA 81 selected half-site sequences XX CC 2 cycles of binding selection and amplification in the absence of Mg2+ ions using purified USF (HeLa cells); figures have been mirrored to obtain the complete matrix XX RN [1]; RE0002936. RX PUBMED: 8052536. RA Bendall A. J., Molloy P. L. RT Base preference for DNA binding by the bHLH-Zip protein USF: effects of magnesiumchloride on specificity and comparison with binding of Myc family members RL Nucleic Acids Res. 22:2801-2810 (1994). XX // AC M00123 XX ID V$MYCMAX_02 XX DT 19.05.1995 (created); ewi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA c-Myc:Max XX DE c-Myc:Max heterodimer XX BF T00140; c-Myc; Species: human, Homo sapiens. BF T00141; c-Myc; Species: chick, Gallus gallus. BF T00142; c-Myc; Species: rat, Rattus norvegicus. BF T00143; c-Myc; Species: mouse, Mus musculus. BF T00489; Max1; Species: human, Homo sapiens. XX P0 A C G T 01 7 7 5 10 N 02 21 3 1 4 A 03 3 11 9 6 N 04 0 29 0 0 C 05 29 0 0 0 A 06 0 27 0 2 C 07 9 0 20 0 G 08 2 4 0 23 T 09 0 0 27 2 G 10 7 3 6 13 N 11 4 12 7 6 N 12 14 4 0 10 W XX BA 29 selected binding sequences XX CC 3 rounds of SAAB using Myc/Max complexes immunoprecipitated from K562 cells; 3 matrices have been combined XX RN [1]; RE0002935. RX PUBMED: 8395000. RA Blackwell T. K., Huang J., Ma A., Kretzner L., Alt F. W., Eisenman R. N., Weintraub H. RT Binding of Myc proteins to canonical and noncanonical DNA sequences RL Mol. Cell. Biol. 13:5216-5224 (1993). XX // AC M00124 XX ID V$PBX1_02 XX DT 22.05.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Pbx1b XX DE homeo domain factor Pbx-1 XX BF T01481; Pbx1a; Species: human, Homo sapiens. XX P0 A C G T 01 8 16 5 4 N 02 16 9 2 10 N 03 10 20 4 5 C 04 36 1 3 0 A 05 0 1 0 39 T 06 0 40 0 0 C 07 37 3 0 0 A 08 40 0 0 0 A 09 0 0 0 40 T 10 0 40 0 0 C 11 36 2 1 1 A 12 34 1 1 4 A 13 16 4 6 14 N 14 9 7 6 17 N 15 11 6 3 18 W XX BA 40 selected binding sequences XX BS GCAATCAATCAATAG; R06818; 12; 15;; p. BS TCGATCAATCAAATC; R06819; 2; 15;; p. BS GCCATCAATCAAAGA; R06820; 8; 15;; p. BS TCAATCAATCAAGTT; R06821; 4; 15;; p. BS TCATCAATCAATTT; R06822; 1; 15; 1; p. BS CATATCAATCAAC; R06823; 15; 15; 28, 29; p. BS AACATCAATCAATAA; R06824; 6; 15;; p. BS CATCAATCAATCA; R06825; 1; 15; 1, 2; p. BS ATCATCAATCAAGTT; R06826; 13; 15;; p. BS TAATCAATCAATTT; R06827; 1; 15; 1; p. BS CCCATCAATCAAGAT; R06828; 3; 15;; p. BS CTAATCAATCAAAGC; R06829; 12; 15;; p. BS CCCATCAATCAATCA; R06830; 11; 15;; p. BS CTCATCAATCAAATT; R06831; 13; 15;; p. BS CAAATCAATCAAAGT; R06832; 4; 15;; p. BS ATCATCAATCAAGTT; R06833; 12; 15;; p. BS GACATCAATCAATAT; R06834; 10; 15;; p. BS AAGATCAATCAATCA; R06835; 14; 15;; p. BS CATCAATCAAGAG; R06836; 1; 15; 1, 2; p. BS CAAATCAATCAAACA; R06837; 15; 15;; p. BS CAAATCAATCAAACT; R06838; 13; 15;; p. BS CCCATCAATCAAAGT; R06839; 1; 15;; p. BS TGACTCAATCAAGTC; R06840; 3; 15;; p. BS CATGTCAATCAATTA; R06841; 4; 15;; p. BS AATGTCAATCAATGC; R06842; 5; 15;; p. BS AACGTCAATCAAATT; R06843; 11; 15;; p. BS CATACCAATCAAAA; R06844; 17; 15; 31; p. BS ATCCATCAACAT; R06845; 1; 15; 1, 2, 3; p. BS ATGATCCATCAACTT; R06846; 4; 15;; p. BS GTGATCCATCAATGT; R06847; 13; 15;; p. BS TTCATCAATCTATTT; R06848; 4; 15;; p. BS CACATCAATCCAATG; R06849; 2; 15;; p. BS ACATCAATCCATCA; R06850; 1; 15; 1; p. BS CAAATCAATCGACCA; R06851; 8; 15;; p. BS ACCATCAATCATATA; R06852; 11; 15;; p. BS CACATCAATCATTTC; R06853; 6; 15;; p. BS CTAATCAATCATAAT; R06854; 10; 15;; p. BS GGCATCAATCAGATC; R06855; 9; 15;; p. BS CATATCAATCACAAT; R06856; 1; 15;; p. BS CCATCAATCATATA; R06857; 1; 15; 1; p. XX CC 6 rounds of selection from random 30-mers by binding to bacterially expressed Pbx1b and amplification XX RN [1]; RE0003009. RX PUBMED: 7910944. RA Lu Q., Wright D. D., Kamps M. P. RT Fusion with E2A converts the Pbx1 homeodomain protein into a constitutive transcriptional activator in human leukemias carrying the t(1;19) translocation RL Mol. Cell. Biol. 14:3938-3948 (1994). XX // AC M00125 XX ID F$MCM1_01 XX DT 22.05.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MCM1 XX DE yeast factor MCM1 cooperating with MATalpha factors XX BF T00500; MCM1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 8 3 2 10 W 02 3 4 4 12 T 03 6 0 5 12 T 04 0 23 0 0 C 05 0 23 0 0 C 06 0 10 0 13 Y 07 18 1 1 3 A 08 19 0 1 3 A 09 11 0 0 12 W 10 5 10 4 4 N 11 8 4 6 5 N 12 5 0 18 0 G 13 1 0 21 1 G 14 6 2 0 15 T 15 14 6 2 1 A 16 15 0 2 6 A XX BA 23 selected binding sequences XX BS CATCCTAAAAAGGAAA; R06858; 15; 16;; p. BS ATGCCTAAACAGGTAG; R06859; 19; 16;; p. BS CGTCCTAAACAGGACA; R06860; 14; 16;; p. BS TCGCCTAAATAAGTAA; R06861; 16; 16;; p. BS ACTCCTAAATAGGCTA; R06862; 22; 16;; p. BS TTGCCTAAAGCGGTAA; R06863; 19; 16;; p. BS TTTCCTAATCGGTTGT; R06864; 19; 16;; p. BS TATCCTAATGTGGTAT; R06865; 15; 16;; p. BS ACTCCTATATAAATCG; R06866; 20; 16;; p. BS TTTCCTAGACCGGTCA; R06867; 14; 16;; p. BS ATGCCTTAACGGGTAA; R06868; 21; 16;; p. BS ATACCTTATGTGGTAT; R06869; 19; 16;; p. BS TTACCTCATCCAGCCT; R06870; 19; 16;; p. BS TTGCCCAAAAGGGACA; R06871; 19; 16;; p. BS ATACCCAAAGTAGAAA; R06872; 14; 16;; p. BS GTTCCCAATCAGGAGA; R06873; 19; 16;; p. BS CCACCCAATCCAGTAA; R06874; 12; 16;; p. BS AGTCCCAATCGGGTCA; R06875; 12; 16;; p. BS TGACCCAATATGGTAT; R06876; 22; 16;; p. BS TATCCCATTAAGGTAA; R06877; 12; 16;; p. BS AGTCCCATTAGGGTAA; R06878; 22; 16;; p. BS GTTCCCTATCGGGTAA; R06879; 20; 16;; p. BS TTACCCGATTTGGAAT; R06880; 18; 16;; p. XX CC 4 rounds of selection / amplification using in vitro transcribed/translated MCM1(1-112)T XX RN [1]; RE0003010. RX PUBMED: 1630900. RA Wynne J., Treisman R. RT SRF and MCM1 have related but distinct DNA binding specificities RL Nucleic Acids Res. 20:3297-3303 (1992). XX // AC M00126 XX ID V$GATA1_02 XX DT 22.05.1995 (created); hiwi. DT 08.04.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GATA-1 XX DE GATA-binding factor 1 XX BF T00305; GATA-1; Species: mouse, Mus musculus. BF T00267; GATA-1; Species: chick, Gallus gallus. BF T00306; GATA-1; Species: human, Homo sapiens. BF T00304; GATA-1A; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 3 3 7 6 N 02 5 4 2 8 N 03 8 5 4 2 N 04 5 4 5 5 N 05 9 4 1 5 N 06 0 0 20 0 G 07 20 0 0 0 A 08 0 0 0 20 T 09 20 0 0 0 A 10 6 4 9 1 N 11 2 1 11 6 K 12 4 3 11 2 G 13 2 4 10 4 N 14 6 4 4 6 N XX BA 20 selected binding sequences XX CC 3 rounds of selection / amplification from random 26-mers binding to murine GATA-1 in crude MEL extracts and using mGATA-1 antibodies; only sites containing GATA consensus XX RN [1]; RE0003011. RX PUBMED: 8262042. RA Whyatt D. J., deBoer E., Grosveld F. RT The two zinc finger-like domains of GATA-1 have different DNA binding specificities RL EMBO J. 12:4993-5005 (1993). XX // AC M00127 XX ID V$GATA1_03 XX DT 22.05.1995 (created); hiwi. DT 08.03.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GATA-1 XX DE GATA-binding factor 1 XX BF T00305; GATA-1; Species: mouse, Mus musculus. BF T00267; GATA-1; Species: chick, Gallus gallus. BF T00306; GATA-1; Species: human, Homo sapiens. BF T00304; GATA-1A; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 4 1 2 0 R 02 1 1 3 2 N 03 1 2 4 0 S 04 2 2 2 1 N 05 3 0 2 2 D 06 0 0 12 0 G 07 12 0 0 0 A 08 0 0 0 12 T 09 0 0 0 12 T 10 8 1 3 0 A 11 1 4 4 3 N 12 3 4 3 2 N 13 3 1 7 1 G 14 2 4 4 2 N XX BA 12 selected binding sequences XX CC 3 rounds of selection / amplification from random 26-mers binding to murine GATA-1 in crude MEL extracts and using mGATA-1 antibodies; only sequences with GATT consensus XX RN [1]; RE0023974. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 4:0002 (2004). RN [2]; RE0003011. RX PUBMED: 8262042. RA Whyatt D. J., deBoer E., Grosveld F. RT The two zinc finger-like domains of GATA-1 have different DNA binding specificities RL EMBO J. 12:4993-5005 (1993). XX // AC M00128 XX ID V$GATA1_04 XX DT 22.05.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GATA-1 XX DE GATA-binding factor 1 XX BF T00305; GATA-1; Species: mouse, Mus musculus. BF T00267; GATA-1; Species: chick, Gallus gallus. BF T00306; GATA-1; Species: human, Homo sapiens. BF T00304; GATA-1A; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 15 1 11 10 N 02 10 11 12 15 N 03 11 25 9 3 C 04 25 2 2 19 W 05 0 0 48 0 G 06 48 0 0 0 A 07 0 0 0 48 T 08 48 0 0 0 A 09 27 1 16 4 R 10 11 8 24 5 N 11 12 8 18 10 N 12 15 13 16 4 N 13 8 13 14 12 N XX BA 48 putative in vivo GATA-1 sites XX CC compiled genomic sequences XX RN [1]; RE0003011. RX PUBMED: 8262042. RA Whyatt D. J., deBoer E., Grosveld F. RT The two zinc finger-like domains of GATA-1 have different DNA binding specificities RL EMBO J. 12:4993-5005 (1993). XX // AC M00129 XX ID V$HFH1_01 XX DT 22.05.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HFH-1 XX DE HNF-3/Fkh Homolog 1 XX BF T02288; HFH-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 2 3 3 6 N 02 10 1 2 1 A 03 4 2 0 8 T 04 2 0 0 12 T 05 0 0 14 0 G 06 0 0 0 14 T 07 0 0 0 14 T 08 0 0 0 14 T 09 13 0 1 0 A 10 0 1 3 10 T 11 5 0 2 7 W 12 1 2 0 11 T XX BA 14 selected binding sequences XX BS AATTGTTTATTT; R06924; 1; 12;; p. BS AATTGTTTATTC; R06925; 1; 12;; p. BS GAATGTTTATTT; R06926; 1; 12;; p. BS TGTTGTTTATTT; R06927; 1; 12;; p. BS CACTGTTTATTT; R06928; 1; 12;; p. BS GTTTGTTTACAT; R06929; 1; 12;; p. BS CATTGTTTATAC; R06930; 1; 12;; p. BS TACTGTTTATAT; R06931; 1; 12;; p. BS GAATGTTTAGAT; R06932; 1; 12;; p. BS TAAAGTTTAGAT; R06933; 1; 12;; p. BS TCTTGTTTAGTT; R06934; 1; 12;; p. BS TATTGTTTATGT; R06935; 1; 12;; p. BS CGTTGTTTATGT; R06936; 1; 12;; p. BS TAAAGTTTGTTA; R06937; 1; 12;; p. XX CC 4 cycles of SAAB using bacterially expressed HFH-1 and random 12-mers XX RN [1]; RE0003012. RX PUBMED: 8139574. RA Overdier D. G., Porcella A., Costa R. H. RT The DNA-binding specificity of the hepatocyte nuclear factor 3/forkhead domain is influenced by amino acid residues adjacent to the recognition helix RL Mol. Cell. Biol. 14:2755-2766 (1994). XX // AC M00130 XX ID V$FOXD3_01 XX DT 22.05.1995 (created); hiwi. DT 10.01.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA FOXD3 XX DE fork head box D3 XX BF T02290; FOXD3; Species: rat, Rattus norvegicus. BF T04166; FOXD3; Species: mouse, Mus musculus. BF T04167; FOXD3; Species: human, Homo sapiens. XX P0 A C G T 01 9 3 14 6 N 02 21 2 0 9 A 03 15 1 0 16 W 04 1 2 0 29 T 05 10 0 21 1 G 06 0 0 0 32 T 07 1 0 0 31 T 08 5 0 5 22 T 09 11 0 14 7 R 10 5 5 1 21 T 11 1 2 4 25 T 12 1 10 0 21 T XX BA 32 selected binding sequences XX BS GCTAGTTTATTC; R06938; 1; 12;; p. BS GACTGTTTATTC; R06939; 1; 12;; p. BS CTATGTTTATTC; R06940; 1; 12;; p. BS GAATGTTTATTC; R06941; 1; 12;; p. BS TAATGTTTATTT; R06942; 1; 12;; p. BS GTTTATTTAACT; R06943; 1; 12;; p. BS GTTTATTTAAGC; R06944; 1; 12;; p. BS GTTTGTTTAAGC; R06945; 1; 12;; p. BS GTTTGTTTAACC; R06946; 1; 12;; p. BS GTTTGTTTAGGA; R06947; 1; 12;; p. BS GTTTGTTATTGT; R06948; 1; 12;; p. BS TATTGTTATTTT; R06949; 1; 12;; p. BS GTTTGTTGTTTT; R06950; 1; 12;; p. BS GATTGTTGTTTT; R06951; 1; 12;; p. BS AAATATTATTTC; R06952; 1; 12;; p. BS AAACATTATTTC; R06953; 1; 12;; p. BS AAATATTTGCTT; R06954; 1; 12;; p. BS AAATATTTGTTC; R06955; 1; 12;; p. BS AAATATTAGCTT; R06956; 1; 12;; p. BS AAATATTTGTTT; R06957; 1; 12;; p. BS AAATATTGGTTT; R06958; 1; 12;; p. BS AAACATTTACTT; R06959; 1; 12;; p. BS AAATGTTTGCTT; R06960; 1; 12;; p. BS GAATGTTTGTTT; R06961; 1; 12;; p. BS TAATGTTTGTTT; R06962; 1; 12;; p. BS GTTTGTTTGTTT; R06963; 1; 12;; p. BS GCTTGTTTGTTT; R06964; 1; 12;; p. BS CAATGTTTGTTT; R06965; 1; 12;; p. BS TATTGTTTGCAT; R06966; 1; 12;; p. BS CATTGTTGGTTT; R06967; 1; 12;; p. BS TATTGTTGGTTT; R06968; 1; 12;; p. BS TATTTTATTATT; R06969; 1; 12;; p. XX CC 4 cycles of SAAB using bacterially expressed HFH-2 and random 12-mers; joint matrix for 3 groups of sequences XX RN [1]; RE0003012. RX PUBMED: 8139574. RA Overdier D. G., Porcella A., Costa R. H. RT The DNA-binding specificity of the hepatocyte nuclear factor 3/forkhead domain is influenced by amino acid residues adjacent to the recognition helix RL Mol. Cell. Biol. 14:2755-2766 (1994). XX // AC M00131 XX ID V$HNF3B_01 XX DT 22.05.1995 (created); hiwi. DT 11.11.1998 (updated); tme. CO Copyright (C), Biobase GmbH. XX NA HNF-3beta XX DE Hepatocyte Nuclear Factor 3beta XX BF T01049; HNF-3beta; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 3 4 6 K 02 1 0 9 4 G 03 8 5 5 6 N 04 15 5 2 2 A 05 11 4 2 7 N 06 0 1 0 23 T 07 12 0 12 0 R 08 0 0 0 24 T 09 0 0 0 24 T 10 1 0 3 20 T 11 11 1 9 3 R 12 2 10 1 11 Y 13 3 1 3 17 T 14 1 5 0 17 T 15 8 0 1 5 W XX BA 24 binding sites (14 genomic sites from 11 genes plus 10 synthetic sites) XX CC the sequences have been reviewed thoroughly and realigned by the TransFac team [1] which lead to slight differences in respect to the literature data XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003012. RX PUBMED: 8139574. RA Overdier D. G., Porcella A., Costa R. H. RT The DNA-binding specificity of the hepatocyte nuclear factor 3/forkhead domain is influenced by amino acid residues adjacent to the recognition helix RL Mol. Cell. Biol. 14:2755-2766 (1994). XX // AC M00132 XX ID V$HNF1_01 XX DT 22.05.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF-1 XX DE hepatic nuclear factor 1 XX BF T01211; HNF-1alpha; Species: mouse, Mus musculus. BF T00369; HNF-1alpha; Species: rat, Rattus norvegicus. BF T00368; HNF-1alpha-A; Species: human, Homo sapiens. XX P0 A C G T 01 6 0 16 3 G 02 2 0 24 0 G 03 1 0 0 25 T 04 2 0 0 24 T 05 25 0 0 1 A 06 20 2 1 3 A 07 2 0 0 24 T 08 8 3 8 7 N 09 16 0 1 9 W 10 3 1 1 21 T 11 1 4 0 21 T 12 16 1 6 3 A 13 9 11 3 3 M 14 7 14 0 5 C 15 11 7 4 3 N XX BA 26 binding sites from 20 genes XX CC compiled sequences XX RN [1]; RE0003013. RX PUBMED: 1365913. RA Tronche F., Yaniv M. RT HNF1, a homeoprotein member of the hepatic transcription reulatory network RL BioEssays 14:579-587 (1992). XX // AC M00133 XX ID V$TST1_01 XX DT 22.05.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Tst-1 XX DE POU-factor Tst-1/Oct-6 XX BF T00655; POU3F1; Species: human, Homo sapiens. BF T00656; POU3F1; Species: mouse, Mus musculus. BF T00969; POU3F1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 1 1 3 1 N 02 2 1 2 1 N 03 0 1 3 2 K 04 1 1 4 0 G 05 5 0 0 1 A 06 4 0 0 2 A 07 0 0 0 6 T 08 2 0 0 4 T 09 4 1 0 1 A 10 2 2 2 0 V 11 4 1 1 0 A 12 2 2 2 0 V 13 0 1 1 4 T 14 2 0 2 2 D 15 1 2 2 1 N XX BA 6 binding sites in the P0 promoter XX BS GGGGATTTTAAGCAG; R06996; 1; 15;; p. BS GATCATTTAAACTGC; R06997; 1; 15;; p. BS ACTGAATTACCATTC; R06998; 1; 15;; p. BS CTCGTATTAGAATGG; R06999; 1; 15;; p. BS TAGGAATACCACTTA; R07000; 1; 15;; p. BS GGGAAATAAGGGGAT; R07001; 1; 15;; p. XX CC compiled sequences XX RN [1]; RE0003014. RX PUBMED: 1705013. RA He X., Gerrero R., Simmons D. M., Park R. E., Lin C. R., Swanson L. W., Rosenfeld M. G. RT Tst-1, a member of the POU domein gene family, binds the promoter of the gene encoding the cell surface adhesion molecule po RL Mol. Cell. Biol. 11:1739-1744 (1991). XX // AC M00134 XX ID V$HNF4_01 XX DT 22.05.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA HNF-4 XX DE hepatic nuclear factor 4 XX BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. BF T00373; HNF-4alpha2; Species: human, Homo sapiens. XX P0 A C G T 01 10 4 4 6 N 02 6 9 7 5 N 03 12 6 7 6 N 04 12 3 14 3 R 05 2 0 29 1 G 06 5 2 17 8 G 07 3 8 10 11 N 08 1 23 1 7 C 09 27 1 3 1 A 10 29 0 3 0 A 11 26 0 5 1 A 12 3 0 28 1 G 13 3 1 16 12 K 14 2 6 6 18 T 15 0 24 1 7 C 16 22 4 4 2 A 17 9 9 6 6 N 18 7 5 13 5 N 19 8 3 6 7 N XX BA 32 binding sites from 24 genes XX CC compiled sequences XX // AC M00135 XX ID V$OCT1_01 XX DT 22.05.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE octamer factor 1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. XX P0 A C G T 01 9 8 4 9 N 02 6 8 11 14 N 03 13 14 12 5 N 04 23 12 7 9 N 05 26 1 10 17 W 06 1 1 0 54 T 07 56 0 0 0 A 08 0 0 0 56 T 09 0 0 56 0 G 10 0 53 1 2 C 11 43 0 0 13 A 12 56 0 0 0 A 13 55 0 1 0 A 14 3 0 1 52 T 15 14 7 9 24 N 16 4 11 6 32 T 17 8 19 14 9 N 18 13 11 14 10 N 19 12 9 14 10 N XX BA 56 selected binding sequences XX BS CACAATATGCTAATA; R07002; 1; 19;; p. BS CCCATTATGCAAATTA; R07003; 1; 19;; p. BS CCCATTATGCTAATGT; R07004; 1; 19;; p. BS CGATATGCTAATGCATG; R07005; -2; 19;; p. BS CTACATATGCTAATGTATG; R07006; 1; 19;; p. BS TGGATTATGCAAATATCGC; R07007; 1; 19;; p. BS ATGATTATGCAAATGTCGT; R07008; 1; 19;; p. BS TAGATTATGCAAATAGCG; R07009; 1; 19;; p. BS ATCGTTATGCAAATTTC; R07010; 1; 19;; p. BS GCAAGTATGCTAATTTCAA; R07011; 1; 19;; p. BS TTTCGTATGCTAATTTCAA; R07012; 1; 19;; p. BS TAAAGTATGCTAATTTTTG; R07013; 1; 19;; p. BS CTTCGTATGCAAATTCC; R07014; 1; 19;; p. BS ATAAATATGCAAATCT; R07015; 1; 19;; p. BS GCACATATGCAAATCTGGA; R07016; 1; 19;; p. BS ACTGATATGCAAATTGGC; R07017; 1; 19;; p. BS AGGAATATGCAAATATCCG; R07018; 1; 19;; p. BS CGGAATATGCAAATATGCG; R07019; 1; 19;; p. BS ATGCATATGCAAATCAGAG; R07020; 1; 19;; p. BS GTCAATATGCAAATCCCAA; R07021; 1; 19;; p. BS ATGAATATGCAAAT; R07022; 1; 19;; p. BS ATACATATGCAAATACAAG; R07023; 1; 19;; p. BS AAAATATGCAAATTCAAT; R07024; -1; 19;; p. BS TGGTATATGCAAATGCAA; R07025; 1; 19;; p. BS TTGAATATGCAAAAACAGA; R07026; 1; 19;; p. BS TCTGCATGCAAATTTCTG; R07027; -1; 19;; p. BS TTTATGCAAATTCGTA; R07028; -3; 19;; p. BS GTATGCAAATTTTTA; R07029; -4; 19;; p. BS TCAATGCAAATTAGTA; R07030; -3; 19;; p. BS TGTTATGCAAATTCGGC; R07031; -2; 19;; p. BS CTTATGCAAATTGGAT; R07032; -3; 19;; p. BS AGTTATGCAAATCTGGG; R07033; -2; 19;; p. BS ATATGCAAATTCTGC; R07034; -4; 19;; p. BS GTTTTATGCAAAACGGTC; R07035; -1; 19;; p. BS AATATGCAAATGAGCA; R07036; -3; 19;; p. BS AATATGCAAATGTGAA; R07037; -3; 19;; p. BS TATGCTAATCGTCC; R07038; -5; 19;; p. BS CCATTATGCTAATATCGG; R07039; -1; 19;; p. BS ACCATATGCAAATATCCG; R07040; -1; 19;; p. BS TATGCAAATGTGCG; R07041; -5; 19;; p. BS GGAGGTATGCAAATTTCCA; R07042; 1; 19;; p. BS ATTTATGCTAATTTTGC; R07043; -2; 19;; p. BS TGCATATGCTAATATGTC; R07044; -1; 19;; p. BS GCTTTATGCAAATTTTGC; R07045; -1; 19;; p. BS GCCGTATGCAAATTTTAT; R07046; -1; 19;; p. BS CGCCGTATGCAAATATCGA; R07047; 1; 19;; p. BS GCCGTATGCAAATGTTCT; R07048; -1; 19;; p. BS TCCAATATGCAAATATACT; R07049; 1; 19;; p. BS TGAGATATGCAAATATCAC; R07050; 1; 19;; p. BS AATATGCAAATTTCAT; R07051; -3; 19;; p. BS AAATATGCAAATTGCAT; R07052; -2; 19;; p. BS ATATGCTAATTTCGT; R07053; -4; 19;; p. BS ACGTATATGGTAAT; R07054; 1; 19;; p. BS TAATTTATGCAAGGATCTT; R07055; 1; 19;; p. BS ATTATGTAAATTTACG; R07056; -3; 19;; p. BS CTGATTATGTAAAATCTGG; R07057; 1; 19;; p. XX CC 4 rounds of selection and amplification from random 24-mers using the whole Oct-1 POU domain; protein was expressed in HeLa cells using a vaccinia expression system XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003015. RX PUBMED: 1361172. RA Verrijzer C. P., Alkema M. J., van Weperen W. W., van Leeuwen H. C., Strating M. J. J., van der Vliet P. C. RT The DNA binding specificity of the bipartite POU domain and its subdomains RL EMBO J. 11:4993-5003 (1992). XX // AC M00136 XX ID V$OCT1_02 XX DT 22.05.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE octamer factor 1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. XX P0 A C G T 01 14 6 8 4 N 02 10 5 8 13 N 03 3 5 27 6 G 04 33 5 4 2 A 05 36 2 2 4 A 06 2 1 0 41 T 07 44 0 0 0 A 08 0 1 0 43 T 09 0 1 23 20 K 10 0 43 0 1 C 11 33 3 5 3 A 12 12 10 6 13 N 13 11 7 11 11 N 14 10 11 6 13 N 15 15 7 6 12 N XX BA 44 selected binding sequences XX CC 4 rounds of selection and amplification from random 24-mers using the POU-specific domain of Oct-1; protein was expressed in HeLa cells using a vaccinia expression system XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003015. RX PUBMED: 1361172. RA Verrijzer C. P., Alkema M. J., van Weperen W. W., van Leeuwen H. C., Strating M. J. J., van der Vliet P. C. RT The DNA binding specificity of the bipartite POU domain and its subdomains RL EMBO J. 11:4993-5003 (1992). XX // AC M00137 XX ID V$OCT1_03 XX DT 22.05.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE octamer factor 1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. XX P0 A C G T 01 7 11 10 10 N 02 8 7 12 14 N 03 8 16 11 9 N 04 18 7 22 4 R 05 1 8 0 42 T 06 50 0 0 1 A 07 50 0 0 1 A 08 8 5 3 35 T 09 9 13 18 10 N 10 31 2 8 7 A 11 6 8 13 10 N 12 11 4 13 8 N 13 11 5 6 13 N XX BA 51 selected binding sequences XX BS GGGGTAATGA; R07102; 5; 13;; p. BS GTTGTAATGA; R07103; 5; 13;; p. BS GTCGTAATGGTCT; R07104; 5; 13;; p. BS TTTAATGTCAT; R07105; -2; 13;; p. BS CCCATAATCACAA; R07106; 5; 13;; p. BS TTGGTAATTAGGA; R07107; 5; 13;; p. BS ACTAATGGTAA; R07108; -2; 13;; p. BS AGACAATGAGGA; R07109; -1; 13;; p. BS CAAACAATAAGCA; R07110; 1; 13;; p. BS ATCGCAATGAGGC; R07111; 5; 13;; p. BS GTAGCAATATT; R07112; 5; 13;; p. BS GTGCTAATTGGTT; R07113; 5; 13;; p. BS ATAACAACAC; R07114; -3; 13;; p. BS AGGGTAATCAGGG; R07115; 5; 13;; p. BS CACGTAACGATT; R07116; 5; 13;; p. BS ATATTAATCATAG; R07117; 1; 13;; p. BS CGCGTATTGA; R07118; 5; 13;; p. BS TGTATAAAGCATG; R07119; 5; 13;; p. BS GGGGTAACCGTGA; R07120; 5; 13;; p. BS CACGATATACTGT; R07121; 5; 13;; p. BS GCGGTAATCA; R07122; 5; 13;; p. BS ATTGCAATGA; R07123; 5; 13;; p. BS TAAATAATGGGAG; R07124; 5; 13;; p. BS CGGATAATCTCAT; R07125; 5; 13;; p. BS TTAATGAGGT; R07126; -3; 13;; p. BS CGCATAAACAATT; R07127; 5; 13;; p. BS CGCCTAATCGTTC; R07128; 4; 13;; p. BS ACCATAACGA; R07129; 5; 13;; p. BS TTCGTAAGA; R07130; 5; 13;; p. BS ATCATAAATAGGA; R07131; 5; 13;; p. BS CTACTAAACAAAA; R07132; 5; 13;; p. BS TCTACAATA; R07133; 5; 13;; p. BS TGGATAATGA; R07134; 5; 13;; p. BS GTAATTTTAT; R07135; -3; 13;; p. BS GTAATTGGGT; R07136; -3; 13;; p. BS GGCGTAATGA; R07137; 5; 13;; p. BS GTAAATACAC; R07138; -3; 13;; p. BS TCGATAATCA; R07139; 5; 13;; p. BS CACACAATTAGTA; R07140; 5; 13;; p. BS CATAAGAACGC; R07141; -2; 13;; p. BS ATAAACACGA; R07142; -3; 13;; p. BS CGCATAAAATCCT; R07143; 5; 13;; p. BS TTTGTAATTAGTT; R07144; 5; 13;; p. BS TCTCTAATAA; R07145; 5; 13;; p. BS TTGCTAAT; R07146; 5; 13;; p. BS TTAATGTGGG; R07147; -3; 13;; p. BS GATGCAATGA; R07148; 5; 13;; p. BS AGAGTAAGTAAGA; R07149; 5; 13;; p. BS GTAGTAAATGACG; R07150; 5; 13;; p. BS ACCTAATCTTTT; R07151; -1; 13;; p. BS CTATAACCAAAT; R07152; -1; 13;; p. XX CC 4 rounds of selection and amplification from random 24-mers using the isolated homeodomain domain of Oct-1; protein was expressed in HeLa cells using a vaccinia expression system XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003015. RX PUBMED: 1361172. RA Verrijzer C. P., Alkema M. J., van Weperen W. W., van Leeuwen H. C., Strating M. J. J., van der Vliet P. C. RT The DNA binding specificity of the bipartite POU domain and its subdomains RL EMBO J. 11:4993-5003 (1992). XX // AC M00138 XX ID V$OCT1_04 XX DT 22.05.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE octamer factor 1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. XX P0 A C G T 01 6 2 6 6 N 02 6 6 2 7 N 03 12 1 6 6 N 04 6 6 6 13 N 05 12 2 12 7 N 06 15 7 7 11 N 07 12 6 8 16 N 08 12 7 4 23 W 09 41 3 2 1 A 10 0 4 4 39 T 11 3 1 34 9 G 12 6 27 4 10 C 13 36 3 0 8 A 14 30 0 4 13 A 15 44 1 2 0 A 16 10 1 3 29 T 17 11 7 6 18 N 18 13 9 4 12 N 19 16 5 5 10 N 20 13 3 4 11 W 21 9 8 4 6 N 22 4 7 11 4 N 23 12 1 3 6 A XX BA 47 selected binding sequences XX CC 3 rounds of selection and amplification using the HeLa fractionated extract and Oct-1-specific antibodies XX RN [1]; RE0003016. RX PUBMED: 8223636. RA Bendall A. J., Sturm R. A., Danoy P. A. C., Molloy P. L. RT Broad binding-site speciificity and affinity properties of octamer 1 and brain octamer-binding proteins RL Eur. J. Biochem. 217:799-811 (1993). XX // AC M00139 XX ID V$AHR_01 XX DT 26.05.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AhR XX DE aryl hydrocarbon / dioxin receptor XX BF T00018; AhR; Species: mouse, Mus musculus. BF T00194; AhR; Species: mouse, Mus musculus. BF T00019; AhR; Species: rat, Rattus norvegicus. BF T00195; AhR; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 6 2 1 C 02 0 6 0 3 C 03 0 5 1 3 Y 04 0 7 2 0 C 05 2 3 3 1 N 06 4 0 5 0 R 07 3 1 4 1 R 08 0 5 4 0 S 09 0 0 0 9 T 10 3 2 1 3 N 11 0 0 9 0 G 12 0 9 0 0 C 13 0 0 9 0 G 14 0 0 0 9 T 15 0 0 9 0 G 16 6 1 1 1 A 17 1 3 5 0 S 18 6 0 0 3 A XX BA 9 binding sites in rat and mouse cytochrome P450 genes XX CC sequences compiled by TRANSFAC XX RN [1]; RE0001664. RX PUBMED: 1652054. RA Hapgood J., Cuthill S., Soederkvist P., Wilhelmsson A., Pongratz I., Tukey R. H., Johnson E. F., Gustafsson J.-A., Poellinger L. RT Liver cells contain constitutive DNase I-hypersensitive sites at the xenobiotic response elements 1 and 2 (XRE1 and -2) of the rat cytochrome P-450IA1 gene and a constitutive, nuclear XRE-binding factor that is distinct from the dioxin receptor RL Mol. Cell. Biol. 11:4314-4323 (1991). RN [2]; RE0002644. RX PUBMED: 1852076. RA Hoffman E. C., Reyes H., Chu F.-F., Sander F., Conley H., Brooks B. A., Hankinson O. RT Cloning of a factor required for activity of the Ah (dioxin) receptor RL Science 252:954-958 (1991). RN [3]; RE0000896. RX PUBMED: 2550446. RA Denison M. S., Fisher J. M., Whitlock J. P. RT Protein-DNA Interactions at Recognition Sites for the Dioxin-Ah Receptor Complex RL J. Biol. Chem. 264:16478-16482 (1989). RN [4]; RE0001231. RX PUBMED: 2548080. RA Neuhold L. A., Shirayoshi Y., Ozato K., Jones J. E., Nebert D. W. RT Regulation of Mouse CYP1A1 Gene Expression by Dioxin: Requirement of Two cis-Acting Elements during Induction RL Mol. Cell. Biol. 9:2378-2386 (1989). RN [5]; RE0002274. RX PUBMED: 2536161. RA Hapgood J., Cuthill S., Denis M., Poellinger L., Gustafsson J.-A. RT Specific protein-DNA interactions at a xenobiotic-responsive element: Copurification of dioxin receptor and DNA-binding affinity RL Proc. Natl. Acad. Sci. USA 86:60-64 (1989). XX // AC M00140 XX ID I$BCD_01 XX DT 26.05.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Bcd XX DE Bicoid XX BF T00063; Bcd; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0 4 7 1 S 02 2 1 8 1 G 03 0 0 12 0 G 04 12 0 0 0 A 05 0 0 0 12 T 06 0 0 0 12 T 07 12 0 0 0 A 08 6 1 2 3 A XX BA 12 binding sites from 3 genes XX CC sequences compiled in TRANSFAC XX // AC M00141 XX ID V$LYF1_01 XX DT 29.05.1995 (created); ewi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Lyf-1 XX DE LyF-1 XX BF T00479; LyF-1; Species: mouse, Mus musculus. XX P0 A C G T 01 0 1 2 8 T 02 0 3 0 8 T 03 1 1 0 9 T 04 2 0 9 0 G 05 1 0 10 0 G 06 0 1 10 0 G 07 9 0 2 0 A 08 3 0 7 1 G 09 6 0 5 0 R XX BA 11 binding sites from 5 genes XX BS TTTGGGAGA; R07200; 1; 9;; p. BS TTCAGCAGG; R07201; 1; 9;; p. BS GTTGGGATG; R07202; 1; 9;; p. BS TTTGGGAGA; R07203; 1; 9;; p. BS TCAGGGAGA; R07204; 1; 9;; p. BS TCTGGGAGG; R07205; 1; 9;; p. BS CCTGGGAGA; R07206; 1; 9;; p. BS GTTGGGAGG; R07207; 1; 9;; p. BS TTTGGGGAA; R07208; 1; 9;; p. BS TTTAGGAAG; R07209; 1; 9;; p. BS TTTGAGGAA; R07210; 1; 9;; p. XX CC compiled sequences XX RN [1]; RE0001480. RX PUBMED: 1922043. RA Lo K., Landau N. R., Smale S. T. RT LyF-1, a transcriptional regulator that interacts with a novel class of promoters for lymphocytes-specific genes RL Mol. Cell. Biol. 11:5229-5243 (1991). XX // AC M00142 XX ID F$NIT2_01 XX DT 29.05.1995 (created); ewi. DT 29.10.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA NIT2 XX DE activator of nitrogen-regulated genes XX BF T00627; NIT2; Species: Neurospora crassa. XX P0 A C G T 01 0 0 0 16 T 02 16 0 0 0 A 03 0 0 0 16 T 04 0 16 0 0 C 05 4 0 3 9 T 06 7 6 0 3 M XX BA 16 binding sites from 2 genes of Neurospora crassa and Aspergillus nidulans XX BS TATCAT; R07213; 1; 6;; p. BS TATCTA; R07214; 12; 6;; n. BS TATCAC; R07215; 11; 6;; p. BS TATCTA; R07216; 31; 6;; p. BS TATCAA; R07217; 44; 6;; p. BS TATCAA; R07218; 54; 6;; p. BS TATCTA; R07219; 2; 6;; p. BS TATCTA; R07220; 26; 6;; p. BS TATCGT; R07221; 22; 6;; p. BS TATCTC; R07222; 61; 6;; p. BS TATCTA; R07223; 1; 6;; n. BS TATCTC; R07224; 7; 6;; n. BS TATCGC; R07225; 8; 6;; p. BS TATCGT; R07226; 22; 6;; p. BS TATCTC; R07227; 7; 6;; p. BS TATCTC; R07228; 29; 6;; n. XX CC compiled sequences XX RN [1]; RE0002401. RX PUBMED: 2142530. RA Fu Y.-H., Marzluf G. A. RT nit-2, the major positive-acting nitrogen regulatory gene of Neurospora crassa, encodes a sequence-specific DNA-binding protein RL Proc. Natl. Acad. Sci. USA 87:5331-5335 (1990). XX // AC M00143 XX ID V$PAX5_01 XX DT 08.06.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA BSAP XX DE B-cell-specific activating protein XX BF T00070; Pax-5; Species: human, Homo sapiens. BF T01201; Pax-5; Species: mouse, Mus musculus. XX P0 A C G T 01 0 2 2 3 B 02 1 5 0 1 C 03 1 2 3 1 N 04 3 1 1 2 N 05 2 1 3 1 N 06 3 0 4 0 R 07 1 3 2 1 N 08 0 1 4 2 G 09 0 7 0 0 C 10 7 0 0 0 A 11 2 2 2 1 N 12 0 2 2 3 B 13 0 1 6 0 G 14 3 1 1 2 N 15 2 0 1 4 T 16 0 0 7 0 G 17 2 3 1 1 N 18 3 0 4 0 R 19 1 0 2 4 T 20 4 1 2 0 A 21 1 1 5 0 G 22 2 5 0 0 C 23 1 3 3 0 S 24 2 0 4 1 G 25 1 4 2 0 C 26 2 3 0 2 H 27 1 3 2 1 N 28 0 3 2 2 B XX BA 7 binding sites from 7 genes XX BS TTGTGACGCAGCGGTGGGTGACGACTGT; R07229; 1; 28;; p. BS TCAATACGCAACGAAGCGAAGACGGACC; R07230; 1; 28;; p. BS CCGCGGAGCACTGATGCAGCGCGGATCC; R07231; 1; 28;; p. BS CAGACACCCATGGTTGAGTGCCCTCCAG; R07232; 1; 28;; p. BS GCTGAGGGCACTGAGGCAGAGCGGCCCC; R07233; 1; 28;; p. BS GCCAAGTTCAGTCTAGTGTAGCAAGCTT; R07234; 1; 28;; p. BS TCCTGGGTCAAGGCTGAATAGACGCAGG; R07235; 1; 28;; p. XX CC compiled class I sequences which are bound by the full-length protein, but not by the truncated BSAP(1-107) XX RN [1]; RE0003116. RX PUBMED: 8406007. RA Czerny T., Schaffner G., Busslinger M. RT DNA sequence recognition by Pax proteins: bipartite structure of the paired domain and its binding site RL Genes Dev. 7:2048-2061 (1993). XX // AC M00144 XX ID V$PAX5_02 XX DT 08.06.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA BSAP XX DE B-cell-specific activating protein XX BF T00070; Pax-5; Species: human, Homo sapiens. BF T01201; Pax-5; Species: mouse, Mus musculus. XX P0 A C G T 01 2 1 2 0 R 02 3 0 2 0 R 03 2 2 0 1 M 04 1 2 2 0 S 05 2 0 1 2 W 06 1 0 4 0 G 07 3 0 1 1 A 08 1 1 1 2 N 09 2 0 1 2 W 10 0 2 1 2 Y 11 0 3 1 1 C 12 0 1 0 4 T 13 1 1 2 1 N 14 3 0 2 0 R 15 4 0 1 0 A 16 0 0 5 0 G 17 0 5 0 0 C 18 0 0 5 0 G 19 0 0 2 3 K 20 2 0 3 0 R 21 4 0 0 1 A 22 0 5 0 0 C 23 1 2 2 0 S 24 3 0 2 0 R 25 0 2 0 3 Y 26 2 1 1 1 N 27 1 2 2 0 S 28 2 2 0 1 M XX BA 5 binding sites from 5 genes XX BS AGAATGGGGCCTGAGGCGTGACCACCGC; R07236; 1; 28;; p. BS CAACTATTTCTTCAAGCGTGTCAACAAA; R07237; 1; 28;; p. BS GATCAGAATTGTGAAGCGTGACCATAGA; R07238; 1; 28;; p. BS AGCGAGATATCTAGAGCGGAACGGTTCC; R07239; 1; 28;; p. BS GACGGGACAGCCTGAGCGGAACGGTGCT; R07240; 1; 28;; p. XX CC compiled class II sequences which are bound by the full-length protein as well as by the truncated BSAP(1-107) XX RN [1]; RE0003116. RX PUBMED: 8406007. RA Czerny T., Schaffner G., Busslinger M. RT DNA sequence recognition by Pax proteins: bipartite structure of the paired domain and its binding site RL Genes Dev. 7:2048-2061 (1993). XX // AC M00145 XX ID V$BRN2_01 XX DT 08.06.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Brn-2 XX DE POU factor Brn-2 XX BF T00630; POU3F2; Species: human, Homo sapiens. BF T01524; POU3F2; Species: rat, Rattus norvegicus. XX P0 A C G T 01 2 3 4 3 N 02 2 4 2 4 N 03 1 9 1 1 C 04 11 0 0 1 A 05 1 0 0 11 T 06 1 3 3 3 N 07 1 5 3 1 S 08 2 0 2 1 R 09 6 0 0 6 W 10 12 0 0 0 A 11 12 0 0 0 A 12 1 0 0 11 T 13 4 2 5 1 N 14 6 4 1 1 M 15 5 0 5 2 R 16 2 5 1 4 N XX BA 12 binding sites from 9 vertebral and insect genes XX BS GTCAATT AAATTTAT; R07241; 1; 16; 8; p. BS GTAATCG TAAAGATC; R07242; 1; 16; 8; p. BS TGCATAAATAATAGGC; R07243; 1; 16;; p. BS GCGAT TAATAAGC; R07244; 1; 16; 6,7,8; p. BS CACTTGGATAATAAGC; R07245; 1; 16;; p. BS ACCATTC TAATACGC; R07246; 1; 16; 8; p. BS CGCATGC TAATGATA; R07247; 1; 16; 8; p. BS AATATGC AAATCAGG; R07248; 1; 16; 8; p. BS GTCAT AAATCAAA; R07249; 1; 16; 6,7,8; p. BS CCCATTCGAAATGCAT; R07250; 1; 16;; p. BS TTCATCGGAAATGCAT; R07251; 1; 16;; p. BS TCCATCCTAAATGCAT; R07252; 1; 16;; p. XX CC compiled sequences XX RN [1]; RE0003117. RX PUBMED: 8276233. RA Li P., He X., Gerrero M. R., Mok M., Aggarwal A., Rosenfeld M. G. RT Spacing and orientation of bipartite DNA-binding motifs as potential functional determinants for POU domain factors RL Genes Dev. 7:2483-2496 (1993). XX // AC M00146 XX ID V$HSF1_01 XX DT 08.06.1995 (created); hiwi. DT 16.11.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF1 XX DE heat shock factor 1 XX BF T01044; HSF1; Species: chick, Gallus gallus. BF T05814; HSF1; Species: rat, Rattus norvegicus. BF T00384; HSF1; Species: mouse, Mus musculus. BF T01042; HSF1 (long); Species: human, Homo sapiens. BF T02104; HSF1 (short); Species: human, Homo sapiens. BF T05813; HSF1long; Species: mouse, Mus musculus. BF T01525; HSF1short; Species: mouse, Mus musculus. XX P0 A C G T 01 24 4 12 5 R 02 0 0 45 0 G 03 38 1 2 4 A 04 36 1 2 6 A 05 7 14 9 15 N 06 13 2 21 8 R 07 6 4 6 29 T 08 5 4 5 31 T 09 0 45 0 0 C 10 6 7 21 11 N XX BA 45 binding sequences (potential dimeric arrays from 41 selected oligonucleotides) XX CC 5 rounds of selection from random 27-mers [1]; the selected sequences contained an average of four to five pentamers [1] XX RN [1]; RE0003118. RX PUBMED: 7935474. RA Kroeger P. E., Morimoto R. I. RT Selection of new HSF1 and HSF2 DNA-binding sites reveals differences in trimer cooperativity RL Mol. Cell. Biol. 14:7592-7603 (1994). XX // AC M00147 XX ID V$HSF2_01 XX DT 08.06.1995 (created); hiwi. DT 16.11.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF2 XX DE heat shock factor 2 XX BF T01045; HSF2; Species: chick, Gallus gallus. BF T01043; HSF2; Species: human, Homo sapiens. BF T00972; HSF2; Species: mouse, Mus musculus. XX P0 A C G T 01 9 6 8 3 N 02 0 0 27 0 G 03 24 1 2 0 A 04 20 1 2 4 A 05 4 6 7 10 N 06 8 7 8 4 N 07 8 2 2 15 W 08 4 0 2 20 T 09 0 27 0 0 C 10 2 4 12 9 K XX BA 27 binding sequences (potential dimeric arrays from 33 selected oligonucleotides) XX CC 5 rounds of selection from random 27-mers [1]; the selected sequences contained an average of two to three pentamers [1] XX RN [1]; RE0003118. RX PUBMED: 7935474. RA Kroeger P. E., Morimoto R. I. RT Selection of new HSF1 and HSF2 DNA-binding sites reveals differences in trimer cooperativity RL Mol. Cell. Biol. 14:7592-7603 (1994). XX // AC M00148 XX ID V$SRY_01 XX DT 08.06.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA SRY XX DE sex-determining region Y gene product XX BF T00997; SRY; Species: human, Homo sapiens. BF T00996; SRY; Species: mouse, Mus musculus. XX P0 A C G T 01 19 0 0 4 A 02 22 0 0 1 A 03 16 0 1 6 A 04 0 17 6 0 C 05 14 0 1 8 W 06 13 5 2 3 A 07 12 8 2 1 M XX BA 23 selected binding sequences XX BS TTACAAA; R07253; 6; 7;; p. BS TAACTCA; R07254; 6; 7;; p. BS AAACAAC; R07255; 6; 7;; p. BS AAACAAC; R07256; 6; 7;; p. BS AATGAAC; R07257; 6; 7;; p. BS AATCACC; R07258; 6; 7;; p. BS AAACACA; R07259; 6; 7;; p. BS AAACTTA; R07260; 6; 7;; p. BS AAGGACA; R07261; 6; 7;; p. BS AAACAAA; R07262; 6; 7;; p. BS TATCAGT; R07263; 6; 7;; p. BS AAAGGAG; R07264; 6; 7;; p. BS AATCTAG; R07265; 6; 7;; p. BS AAAGAGA; R07266; 6; 7;; p. BS AAACTCC; R07267; 6; 7;; p. BS AAAGTTC; R07268; 6; 7;; p. BS AAAGAAC; R07269; 6; 7;; p. BS AAACAAA; R07270; 6; 7;; p. BS AAACTAA; R07271; 6; 7;; p. BS AAACATC; R07272; 6; 7;; p. BS AATCTAA; R07273; 6; 7;; p. BS AATCTAA; R07274; 6; 7;; p. BS TAACAAA; R07275; 6; 7;; p. XX CC 5 rounds of selection from random dekamers XX RN [1]; RE0003119. RX PUBMED: 7813448. RA Pontiggia A., Rimini R., Harley V. R., Goodfellow P. N., Lovell-Badge R., Bianchi M. E. RT Sex-reversing mutations affect the architecture of SRY--DNA complexes RL EMBO J. 13:6115-6124 (1994). XX // AC M00149 XX ID P$SBF1_01 XX DT 08.06.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA SBF-1 XX DE SBF-1 XX BF T00739; SBF-1; Species: french bean, Phaseolus vulgaris. XX P0 A C G T 01 0 1 2 3 K 02 2 1 0 3 W 03 2 0 3 1 R 04 1 1 0 4 T 05 1 1 3 1 N 06 1 1 4 0 G 07 0 0 0 6 T 08 0 0 0 6 T 09 6 0 0 0 A 10 5 1 0 0 A 11 3 0 0 3 W 12 4 0 0 2 A 13 3 0 0 3 W 14 1 1 2 2 N XX BA 6 binding sites from 2 genes XX BS GTGTGGTTAATATG; R07276; 1; 14;; p. BS GTGTCCTTAATATG; R07277; 1; 14;; p. BS TAAAAGTTAAAAAC; R07278; 1; 14;; p. BS CTGTGATTAAATAT; R07279; 1; 14;; p. BS TATTGGTTACTAAA; R07280; 1; 14;; p. BS TCACTGTTAAATTT; R07281; 1; 14;; p. XX CC compiled sequences XX RN [1]; RE0002257. RX PUBMED: 1893099. RA Lawton M. A., Dean S. M., Dron M., Kooter J. M., Kragh D. M., Harrison M. J., Yu L., Tanguay L., Dixon R. A., Lamb C. J. RT Silencer region of a chalcone synthase promoter contains multiple binding sites for a factor, SBF-1, closely related to GT-1 RL Plant Mol. Biol. 16:235-249 (1991). XX // AC M00150 XX ID V$BRACH_01 XX DT 08.06.1995 (created); hiwi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Brachyury XX DE Brachyury XX BF T01526; Brachyury; Species: mouse, Mus musculus. XX P0 A C G T 01 15 17 3 5 M 02 5 3 15 17 K 03 15 14 0 11 H 04 5 12 16 7 N 05 1 2 0 37 T 06 2 19 19 0 S 07 30 0 7 3 A 08 0 40 0 0 C 09 38 0 2 0 A 10 2 34 2 2 C 11 2 28 8 2 C 12 1 1 0 38 T 13 40 0 0 0 A 14 0 0 40 0 G 15 0 0 40 0 G 16 0 0 0 40 T 17 0 0 40 0 G 18 0 2 0 38 T 19 1 7 28 4 G 20 40 0 0 0 A 21 31 5 0 4 A 22 32 0 3 5 A 23 5 5 1 29 T 24 1 5 8 26 T XX BA 40 selected binding sequences XX BS CGCCTCACACCTAGGTGTGAAATT; R07282; 6; 24;; p. BS CGCCTCACACCTAGGTGTGAAATT; R07283; 6; 24;; p. BS CGCCTCACACCTAGGTGTGAAATT; R07284; 6; 24;; p. BS CGCCTCACACCTAGGTGTGAAATT; R07285; 6; 24;; p. BS CGCCTCACACCTAGGTGTGAAATT; R07286; 6; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07287; 14; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07288; 14; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07289; 14; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07290; 14; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07291; 14; 24;; p. BS TCTTTGACACCTAGGTGTCATATT; R07292; 9; 24;; p. BS TCTTTGACACCTAGGTGTCATATT; R07293; 10; 24;; p. BS CGTTTGACACCTAGGTGTCATATT; R07294; 10; 24;; p. BS CGTTTGACACCTAGGTGTCATATT; R07295; 10; 24;; p. BS CGTATCGCACCTAGGTGTGACAAT; R07296; 10; 24;; p. BS TTAGTCACACCTAGGTGTGAAGAG; R07297; 13; 24;; p. BS CGCCTCGCACGTAGGTGCTACTTT; R07298; 6; 24;; p. BS CGCCTCGCAAGTAGGTGTGAAATC; R07299; 6; 24;; p. BS GAATTCACACTTAGGTGTGAAATC; R07300; 1; 24;; p. BS GATGTAACATGTAGGTGTGAAACG; R07301; 16; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07302; 15; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07303; 15; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07304; 15; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07305; 15; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07306; 15; 24;; p. BS AATATGACACCTAGGTGTCAAACG; R07307; 16; 24;; p. BS AATATGACACCTAGGTGTCAAACG; R07308; 16; 24;; p. BS AATATGACACCTAGGTGTCAAACG; R07309; 16; 24;; p. BS CGCCTCGCGGAAAGGTGTGAAATC; R07310; 6; 24;; p. BS CGCCTCGCAAGTAGGTGTGAAATC; R07311; 6; 24;; p. BS CGCCTCGCACATAGGTGTAAAATG; R07312; 6; 24;; p. BS TTCGCCTCACGTAGGTGCGAATCT; R07313; 4; 24;; p. BS GCCTCGTCATGTAGGTGTGAATAT; R07314; 7; 24;; p. BS TTAGTCACACCTAGGTGTGAAGAG; R07315; 13; 24;; p. BS CTTTACTCACCTAGGTGTGAATGA; R07316; 12; 24;; p. BS CTCCTCGCACCCAGGTGTGAAGTT; R07317; 9; 24;; p. BS ATAGTGACACCTAGGTGTGAAATT; R07318; 14; 24;; p. BS AGTATCACACTTAGGTGTTACATC; R07319; 14; 24;; p. BS CGCGTCACGCGTAGGTGTTACAAT; R07320; 10; 24;; p. BS CTACTAACAGGTAGGTGTTACTTG; R07321; 13; 24;; p. XX CC 4 rounds of selection from random 26-mers by binding to in vitro transcribed and translated factor XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003120. RX PUBMED: 8344258. RA Kispert A., Herrmann B. G. RT The Brachyury gene encodes a novel DNA binding protein RL EMBO J. 12:3211-3220 (1993). XX // AC M00151 XX ID P$AG_01 XX DT 08.06.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA AG XX DE Agamous XX BF T01007; AG; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 21 20 6 19 N 02 9 3 3 51 T 03 10 0 1 55 T 04 29 8 8 21 W 05 0 66 0 0 C 06 0 65 0 1 C 07 31 3 6 26 W 08 47 2 0 17 A 09 52 0 1 13 A 10 25 0 1 40 W 11 17 15 11 23 N 12 19 8 20 19 N 13 7 0 57 2 G 14 2 0 54 10 G 15 22 17 5 22 N 16 45 4 5 12 A 17 40 6 9 11 A 18 15 10 16 25 N XX BA 66 selected binding sequences XX CC 5 rounds of selection from random 26-mers bound to bacterially expressed protein XX RN [1]; RE0003121. RX PUBMED: 7901838. RA Huang H., Mizukami Y., Hu Y., Ma H. RT Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS RL Nucleic Acids Res. 21:4769-4776 (1993). XX // AC M00152 XX ID V$SRF_01 XX DT 08.06.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA SRF XX DE serum response factor XX BF T00672; SRF; Species: human, Homo sapiens. BF T00764; SRF; Species: human, Homo sapiens. BF T00761; SRF; Species: chick, Gallus gallus. BF T00762; SRF; Species: cat, Felis silvestris catus. BF T00766; SRF; Species: rat, Rattus norvegicus. BF T00765; SRF (504 AA); Species: mouse, Mus musculus. XX P0 A C G T 01 28 1 2 2 A 02 1 0 0 32 T 03 1 0 31 1 G 04 7 25 0 1 C 05 0 33 0 0 C 06 0 33 0 0 C 07 23 0 0 10 A 08 2 0 0 31 T 09 33 0 0 0 A 10 0 0 0 33 T 11 31 0 0 2 A 12 10 0 0 23 T 13 0 0 33 0 G 14 0 0 33 0 G 15 12 4 3 14 W 16 13 9 8 3 N 17 11 6 7 9 N 18 1 4 8 20 T XX BA 33 selected binding sequences XX CC 4 rounds of selection from random 26-mers using overexpressed SRF present in crude 3T3 cell extracts and specific antibodies for immunoprecipitation XX RN [1]; RE0003122. RX PUBMED: 2243767. RA Pollock R., Treisman R. RT A sensitive method for the determination of protein-DNA binding specificities RL Nucleic Acids Res. 18:6197-6204 (1990). XX // AC M00154 XX ID F$STRE_01 XX DT 08.06.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA STRE XX DE stress-response element XX P0 A C G T 01 3 3 1 10 T 02 6 7 1 3 M 03 17 0 0 0 A 04 0 0 17 0 G 05 0 0 17 0 G 06 0 0 17 0 G 07 0 0 17 0 G 08 4 5 7 1 N XX BA 17 stress-response element-related sequences from 7 stress-induced yeast genes XX BS CAAGGGGA; R07355; 1; 8;; p. BS TAAGGGGC; R07356; 1; 8;; p. BS TAAGGGGT; R07357; 1; 8;; p. BS TAAGGGGC; R07358; 1; 8;; p. BS ACAGGGGG; R07359; 1; 8;; p. BS AAAGGGGC; R07360; 1; 8;; p. BS TCAGGGGG; R07361; 1; 8;; p. BS CCAGGGGA; R07362; 1; 8;; p. BS TCAGGGGC; R07363; 1; 8;; p. BS TCAGGGGG; R07364; 1; 8;; p. BS TTAGGGGG; R07365; 1; 8;; p. BS TTAGGGGG; R07366; 1; 8;; p. BS TAAGGGGG; R07367; 1; 8;; p. BS TTAGGGGA; R07368; 1; 8;; p. BS GCAGGGGG; R07369; 1; 8;; p. BS AGAGGGGA; R07370; 1; 8;; p. BS CCAGGGGC; R07371; 1; 8;; p. XX CC compiled sequences XX RN [1]; RE0003123. RX PUBMED: 7523111. RA Schueller C., Brewster J. L., Alexander M. R., Gustin M. C., Ruis H. RT The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiae CTT1 gene RL EMBO J. 13:4382-4389 (1994). XX // AC M00155 XX ID V$ARP1_01 XX DT 08.06.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA ARP-1 XX DE apolipoprotein AI regulatory protein 1 XX BF T00045; COUP-TF2; Species: human, Homo sapiens. XX P0 A C G T 01 0 1 0 6 T 02 0 1 6 0 G 03 6 1 0 0 A 04 1 0 1 0 R 05 0 5 1 1 C 06 0 6 0 1 C 07 0 4 0 3 Y 08 1 1 0 5 T 09 0 0 0 7 T 10 0 0 7 0 G 11 4 0 1 0 A 12 2 3 1 0 M 13 2 5 0 0 C 14 0 5 0 2 C 15 0 4 1 2 C 16 3 0 0 4 W XX BA 7 binding sites from 6 genes XX BS TGAACCCTTGACCCCT; R07372; 3; 16;; p. BS TGA TCCTTGAACTCT; R07373; 3; 16; 6; p. BS TGA CCTTTG CCCA; R07374; 6; 16; 9,16,17; p. BS CGC CCTTTGGACCTT; R07375; 3; 16; 6; p. BS TGA CCTTTGACACCA; R07376; 10; 16; 13; p. BS TGA CCCCTG GACTT; R07377; 15; 16; 18,25; p. BS TCAGGTCATGACCTGA; R07378; 1; 16;; p. XX CC compiled sequences XX RN [1]; RE0002714. RX PUBMED: 1899293. RA Ladias J. A. A., Karathanasis S. K. RT Regulation of the apolipoprotein A1 gene by ARP-1, a novel member of the steroid receptor superfamily RL Science 251:561-565 (1991). XX // AC M00156 XX ID V$RORA1_01 XX DT 08.06.1995 (created); hiwi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA RORalpha1 XX DE RAR-related orphan receptor alpha1 XX BF T01527; RORalpha1; Species: human, Homo sapiens. XX P0 A C G T 01 10 2 7 6 N 02 9 3 3 10 W 03 15 1 2 7 A 04 9 1 0 15 W 05 6 12 4 3 N 06 11 2 5 7 N 07 21 0 4 0 A 08 0 0 25 0 G 09 0 0 25 0 G 10 0 0 0 25 T 11 0 25 0 0 C 12 25 0 0 0 A 13 7 5 2 10 N XX BA 25 selected binding sequences XX BS AAATTTAGGTCAT; R07379; 16; 13;; p. BS AAATCGAGGTCA; R07380; 19; 13;; p. BS GAATGTAGGTCAT; R07381; 1; 13;; p. BS GATACAGGGTCAT; R07382; 4; 13;; p. BS ATTTAGAGGTCAT; R07383; 8; 13;; p. BS AGATCAAGGTCAC; R07384; 8; 13;; p. BS AATTCAAGGTCAA; R07385; 17; 13;; p. BS TTATACAGGTCAA; R07386; 2; 13;; p. BS AGGAGTAGGTCAC; R07387; 14; 13;; p. BS TTAATTGGGTCAT; R07388; 13; 13;; p. BS ATAACTGGGTCAC; R07389; 1; 13;; p. BS TCTTAGAGGTCAT; R07390; 5; 13;; p. BS ATTTAGAGGTCAT; R07391; 6; 13;; p. BS CATACAAGGTCAT; R07392; 5; 13;; p. BS GTATCCGGGTCAA; R07393; 1; 13;; p. BS CAAATAAGGTCAA; R07394; 12; 13;; p. BS GTACAAAGGTCAG; R07395; 13; 13;; p. BS GCATGAAGGTCAA; R07396; 13; 13;; p. BS GTATCTAGGTCAC; R07397; 14; 13;; p. BS ATCTAAAGGTCAC; R07398; 16; 13;; p. BS ACAACAAGGTCAA; R07399; 10; 13;; p. BS TGGTCAAGGTCAG; R07400; 5; 13;; p. BS TTTTGAAGGTCAT; R07401; 16; 13;; p. BS TAAACGAGGTCAA; R07402; 3; 13;; p. BS GAAACTAGGTCAT; R07403; 11; 13;; p. XX CC 4 rounds of selection from random 30-mers by binding to in vitro-synthesized factor XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003124. RX PUBMED: 7926749. RA Giguere V., Tini M., Flock G., Ong E., Evans R. M., Otulakowski G. RT Isoform-specific amino-terminal domains dictate DNA-binding properties of RORalpha, a novel family of orphan hormone nuclear receptors RL Genes Dev. 8:538-553 (1994). XX // AC M00157 XX ID V$RORA2_01 XX DT 08.06.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA RORalpha2 XX DE RAR-related orphan receptor alpha2 XX BF T01528; RORalpha2; Species: human, Homo sapiens. XX P0 A C G T 01 17 2 7 10 N 02 15 0 4 17 W 03 36 0 0 0 A 04 22 0 0 14 W 05 2 12 13 9 N 06 0 0 0 36 T 07 28 0 8 0 A 08 0 0 36 0 G 09 0 0 36 0 G 10 0 0 0 36 T 11 0 36 0 0 C 12 36 0 0 0 A 13 14 7 10 5 N XX BA 36 selected binding sequences XX BS TTAATTGGGTCAT; R07404; 17; 13;; p. BS TTATTTAGGTCAG; R07405; 16; 13;; p. BS TAATCTAGGTCAT; R07406; 7; 13;; p. BS GAATGTGGGTCAG; R07407; 16; 13;; p. BS ATAAGTAGGTCAA; R07408; 7; 13;; p. BS ATATGTAGGTCAG; R07409; 7; 13;; p. BS GTAATTAGGTCAT; R07410; 16; 13;; p. BS CTAAATAGGTCAG; R07411; 6; 13;; p. BS GTATCTAGGTCAA; R07412; 18; 13;; p. BS AAAAGTAGGTCAC; R07413; 7; 13;; p. BS AAATGTAGGTCAC; R07414; 15; 13;; p. BS AAAAGTAGGTCAT; R07415; 15; 13;; p. BS AAATTTAGGTCAA; R07416; 3; 13;; p. BS AGAATTGGGTCAA; R07417; 18; 13;; p. BS TTATCTGGGTCAA; R07418; 8; 13;; p. BS TTAATTAGGTCAG; R07419; 18; 13;; p. BS TTAATTAGGTCAG; R07420; 15; 13;; p. BS AAATATAGGTCAG; R07421; 7; 13;; p. BS TTAATTAGGTCAC; R07422; 15; 13;; p. BS GGATCTAGGTCAC; R07423; 1; 13;; p. BS GTATCTAGGTCAG; R07424; 15; 13;; p. BS ATAAGTAGGTCAA; R07425; 7; 13;; p. BS GAAACTGGGTCAG; R07426; 10; 13;; p. BS TTATGTAGGTCAA; R07427; 3; 13;; p. BS AGAAGTGGGTCAA; R07428; 18; 13;; p. BS AAAAGTAGGTCAC; R07429; 15; 13;; p. BS AAAACTAGGTCAA; R07430; 5; 13;; p. BS AAATGTGGGTCAA; R07431; 10; 13;; p. BS TAAAGTAGGTCAG; R07432; 15; 13;; p. BS AAAATTAGGTCAA; R07433; 7; 13;; p. BS GAAAGTAGGTCAC; R07434; 6; 13;; p. BS AGAACTAGGTCAA; R07435; 8; 13;; p. BS ATAACTGGGTCAA; R07436; 17; 13;; p. BS CAAACTAGGTCAC; R07437; 15; 13;; p. BS ATATCTAGGTCAA; R07438; 8; 13;; p. BS TTAACTAGGTCAT; R07439; 3; 13;; p. XX CC 6 rounds of selection from random 30-mers by binding to in vitro-synthesized factor XX RN [1]; RE0003124. RX PUBMED: 7926749. RA Giguere V., Tini M., Flock G., Ong E., Evans R. M., Otulakowski G. RT Isoform-specific amino-terminal domains dictate DNA-binding properties of RORalpha, a novel family of orphan hormone nuclear receptors RL Genes Dev. 8:538-553 (1994). XX // AC M00158 XX ID V$COUP_01 XX DT 08.06.1995 (created); hiwi. DT 18.11.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA COUP-TF, HNF-4 XX BF T00147; COUP; Species: rat, Rattus norvegicus. BF T00148; COUP-TF1; Species: chick, Gallus gallus. BF T00149; COUP-TF1; Species: human, Homo sapiens. BF T00994; COUP-TF1; Species: mouse, Mus musculus. BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. BF T00373; HNF-4alpha2; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 2 11 T 02 1 0 12 0 G 03 12 0 1 0 A 04 6 7 0 0 M 05 0 13 0 0 C 06 0 3 0 10 T 07 0 2 0 11 T 08 1 0 0 12 T 09 2 0 11 0 G 10 6 4 3 0 M 11 6 5 1 1 M 12 1 10 1 1 C 13 3 6 0 4 Y 14 0 3 3 7 T XX BA 13 genomic binding sites for COUP-TF and HNF-4 XX BS TGAACTTTAAGCCT; R07440; 1; 14;; p. BS GGACCTTTGATCCC; R07441; 1; 14;; p. BS TGAACTTTAAACCT; R07442; 1; 14;; p. BS TAACCTCTGAACTT; R07443; 1; 14;; p. BS TGACCTTTGACACC; R07444; 1; 14;; p. BS TGACCCCTGGACTT; R07445; 1; 14;; p. BS GGACCTTTGACCCC; R07446; 1; 14;; p. BS TGAACCTTGCCTAG; R07447; 1; 14;; p. BS TGACCCTTGCAGAG; R07448; 1; 14;; p. BS TGACCTTTGCCCAG; R07449; 1; 14;; p. BS TGAACTTTGGACTT; R07450; 1; 14;; p. BS TGAACTTTGGACTT; R07451; 1; 14;; p. BS TGGACTTAGCCCCT; R07452; 1; 14;; p. XX CC compiled sequences XX RN [1]; RE0003125. RX PUBMED: 8496174. RA Kimura A., Nishiyori A., Murakami T., Tsukamoto T., Hata S., Osumi T., Okamura R., Mori M., Takiguchi M. RT Chicken ovalbumin upstream promoter-transcription factor (COUP-TF) represses transcription from the promoter of the gene for ornithine transcarbamylase in a manner antagonistic to hepatocyte nuclear factor-4 (HNF-4) RL J. Biol. Chem. 268:11125-11133 (1993). XX // AC M00159 XX ID V$CEBP_01 XX DT 08.06.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA C/EBP XX DE CCAAT/enhancer binding protein XX BF T01388; C/EBP; Species: clawed frog, Xenopus laevis. BF T00104; C/EBPalpha; Species: mouse, Mus musculus. BF T00108; C/EBPalpha; Species: rat, Rattus norvegicus. BF T00105; C/EBPalpha; Species: human, Homo sapiens. BF T00107; C/EBPalpha; Species: chick, Gallus gallus. XX P0 A C G T 01 5 3 4 10 N 02 7 6 7 2 N 03 5 0 3 14 T 04 3 0 8 11 K 05 2 0 2 18 T 06 0 0 22 0 G 07 2 5 12 3 G 08 8 1 2 11 W 09 10 2 4 6 N 10 16 0 0 6 A 11 6 5 7 4 N 12 4 4 7 7 N 13 4 7 4 7 N XX BA 22 binding sites from 9 viral and cellular genes XX BS AGATTGGTAAACC; R07453; 1; 13;; p. BS TATTTGCAATAGA; R07454; 1; 13;; p. BS CATGGGGAAACTT; R07455; 1; 13;; p. BS GCTGGGATTACAG; R07456; 1; 13;; p. BS GGATTGCAGATGC; R07457; 1; 13;; p. BS GCTGAGGTAAGAG; R07458; 1; 13;; p. BS TATTTGTTTTGTG; R07459; 1; 13;; p. BS TATTTGCTAAACT; R07460; 1; 13;; p. BS TCATTGGCGAATT; R07461; 1; 13;; p. BS TGATTGGTTAGTT; R07462; 1; 13;; p. BS TCTGTGGTAAGCA; R07463; 1; 13;; p. BS GGTGTGGAAAGTC; R07464; 1; 13;; p. BS AGTGTGGTTTTGC; R07465; 1; 13;; p. BS AATGTGGATATCC; R07466; 1; 13;; p. BS TGTTTGCTGACGC; R07467; 1; 13;; p. BS ATTTTGTAATGGG; R07468; 1; 13;; p. BS TGGATGCTATAAC; R07469; 1; 13;; p. BS CCTATGTTAAGTA; R07470; 1; 13;; p. BS TATTAGGACATGT; R07471; 1; 13;; p. BS ATGTTGAGTAAGA; R07472; 1; 13;; p. BS CAGGTGGGCACAT; R07473; 1; 13;; p. BS TCAATGGAGTCTT; R07474; 1; 13;; p. XX CC compiled sequences XX RN [1]; RE0002090. RX PUBMED: 1672737. RA Grange T., Roux J., Rigaud G., Pictet R. RT Cell-type specific activity of two glucocorticoid responsive units of rat tyrosine aminotransferase gene is associated with multiple binding sites for C/EBP and a novel liver-specific nuclear factor RL Nucleic Acids Res. 19:131-139 (1991). XX // AC M00160 XX ID V$SRY_02 XX DT 08.06.1995 (created); hiwi. DT 16.10.1995 (updated); dbo. CO Copyright (C), Biobase GmbH. XX NA SRY XX DE sex-determining region Y gene product XX BF T00997; SRY; Species: human, Homo sapiens. BF T00996; SRY; Species: mouse, Mus musculus. XX P0 A C G T 01 6 6 10 7 N 02 10 4 3 12 W 03 15 1 2 11 W 04 21 2 1 5 A 05 25 0 0 4 A 06 0 29 0 0 C 07 28 0 0 1 A 08 27 0 0 2 A 09 10 0 1 18 W 10 16 3 5 5 A 11 7 6 13 3 N 12 11 2 10 6 N XX BA 29 selected binding sequences XX BS ACACACAATCGA; R07475; 24; 12;; p. BS TAAAACAAGCGA; R07476; 24; 12;; p. BS GATAACAATGGC; R07477; 22; 12;; p. BS ATTAACAATAGT; R07478; 18; 12;; p. BS CGTAACAATTCG; R07479; 25; 12;; p. BS TGTATCAATTTT; R07480; 22; 12;; p. BS CTAAACAAAGCT; R07481; 17; 12;; p. BS ATCAACAAAGAG; R07482; 11; 12;; p. BS GTTAACAAATGG; R07483; 18; 12;; p. BS GCTATCAATTGT; R07484; 10; 12;; p. BS GAAAACAATCGA; R07485; 13; 12;; p. BS TAATACATAATA; R07486; 18; 12;; p. BS ATAAACAATAAA; R07487; 19; 12;; p. BS GTATACAATGAG; R07488; 27; 12;; p. BS ATTATCATAACG; R07489; 16; 12;; p. BS TAAAACAATACA; R07490; 10; 12;; p. BS CTTAACAATAGA; R07491; 14; 12;; p. BS TAGAACAAAACC; R07492; 7; 12;; p. BS CCAAACAATTAG; R07493; 15; 12;; p. BS GAATACAATAAT; R07494; 7; 12;; p. BS GTTTACAATAGA; R07495; 10; 12;; p. BS TGTGACAATAGA; R07496; 27; 12;; p. BS GATAACAAAGAG; R07497; 7; 12;; p. BS ATAAACAATATG; R07498; 25; 12;; p. BS TAAAACAAAAGG; R07499; 12; 12;; p. BS GCGCACAATAGA; R07500; 15; 12;; p. BS GTATTCAAAACT; R07501; 10; 12;; p. BS CAAAACTAAAAG; R07502; 15; 12;; p. BS CTAAACAATAGA; R07503; 17; 12;; p. XX CC 9 rounds of selection from random 26-mers by binding to bacterially expressed factor XX RN [1]; RE0003126. RX PUBMED: 8190643. RA Harley V. R., Lovell-Badge R., Goodfellow P. N. RT Definition of a consensus DNA binding site for SRY RL Nucleic Acids Res. 22:1500-1501 (1994). XX // AC M00161 XX ID V$OCT1_05 XX DT 08.06.1995 (created); hiwi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE octamer-binding factor 1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. XX P0 A C G T 01 3 3 1 0 M 02 0 0 3 4 K 03 3 2 2 0 V 04 6 1 0 0 A 05 0 0 0 7 T 06 0 0 0 7 T 07 2 0 0 5 T 08 0 1 5 1 G 09 0 7 0 0 C 10 7 0 0 0 A 11 0 0 0 7 T 12 5 0 1 1 A 13 1 2 0 4 T 14 0 2 1 4 T XX BA 7 binding sites from 6 genes XX BS CTCATTATCATATT; R07504; 1; 14;; p. BS CTCATTTGCATAAG; R07505; 1; 14;; p. BS CGAATTTGCATGCC; R07506; 1; 14;; p. BS GTAATTTGCATTTC; R07507; 1; 14;; p. BS AGGATTTGCATATT; R07508; 1; 14;; p. BS ATGCTTTGCATACT; R07509; 1; 14;; p. BS AGAATTACCATATT; R07510; 1; 14;; p. XX CC compiled sequences XX RN [1]; RE0003127. RX PUBMED: 1508722. RA Groenen M. A. M., Dijkhof R. J. M., van der Poel J. J., van Diggelen R., Verstege E. RT Multiple octamer binding sites in the promoter region of the bovine alphas2-casein gene RL Nucleic Acids Res. 20:4311-4318 (1992). XX // AC M00162 XX ID V$OCT1_06 XX DT 08.06.1995 (created); hiwi. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE octamer-binding factor 1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. XX P0 A C G T 01 1 4 1 0 C 02 3 0 1 2 W 03 2 1 1 2 N 04 4 1 0 1 A 05 3 1 0 2 W 06 0 0 0 6 T 07 0 0 3 3 K 08 3 0 1 2 W 09 1 3 2 0 S 10 6 0 0 0 A 11 0 0 0 6 T 12 2 0 3 1 R 13 0 3 0 3 Y 14 2 1 1 2 N XX BA 6 binding sites of TAATGARAT type from 3 genes XX BS CTAATTGAGATGCA; R07511; 1; 14;; p. BS CACATTTTAATACT; R07512; 1; 14;; p. BS GGTAATGAGATGCC; R07513; 1; 14;; p. BS AATCATGACATTTA; R07514; 1; 14;; p. BS CTATATTTCATGTT; R07515; 1; 14;; p. BS CAGACTTGCATATG; R07516; 1; 14;; p. XX CC compiled sequences XX RN [1]; RE0003127. RX PUBMED: 1508722. RA Groenen M. A. M., Dijkhof R. J. M., van der Poel J. J., van Diggelen R., Verstege E. RT Multiple octamer binding sites in the promoter region of the bovine alphas2-casein gene RL Nucleic Acids Res. 20:4311-4318 (1992). XX // AC M00163 XX ID I$HSF_02 XX DT 22.06.1995 (created); ewi. DT 27.03.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (Drosophila) XX BF T00386; HSTF; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 31 14 4 1 A 02 0 0 50 0 G 03 48 2 0 0 A 04 43 1 5 1 A 05 23 1 14 12 N 06 31 14 4 1 A 07 0 0 50 0 G 08 48 2 0 0 A 09 43 1 5 1 A 10 23 1 14 12 N 11 31 14 4 1 A 12 0 0 50 0 G 13 48 2 0 0 A 14 43 1 5 1 A 15 23 1 14 12 N XX BA 50 functional genomic HSEs XX CC triple repeat of the 5-bp unit in NGAANNGAANNGAAN orientation XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00164 XX ID I$HSF_03 XX DT 22.06.1995 (created); ewi. DT 27.03.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (Drosophila) XX BF T00386; HSTF; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 31 14 4 1 A 02 0 0 50 0 G 03 48 2 0 0 A 04 43 1 5 1 A 05 23 1 14 12 N 06 31 14 4 1 A 07 0 0 50 0 G 08 48 2 0 0 A 09 43 1 5 1 A 10 23 1 14 12 N 11 12 14 1 23 N 12 1 5 1 43 T 13 0 0 2 48 T 14 0 50 0 0 C 15 1 4 14 31 T XX BA 50 functional genomic HSEs XX CC triple repeat of the 5-bp unit in NGAANNGAANNTTCN orientation XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00165 XX ID I$HSF_04 XX DT 22.06.1995 (created); ewi. DT 27.03.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (Drosophila) XX BF T00386; HSTF; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 31 14 4 1 A 02 0 0 50 0 G 03 48 2 0 0 A 04 43 1 5 1 A 05 23 1 14 12 N 06 12 14 1 23 N 07 1 5 1 43 T 08 0 0 2 48 T 09 0 50 0 0 C 10 1 4 14 31 T 11 31 14 4 1 A 12 0 0 50 0 G 13 48 2 0 0 A 14 43 1 5 1 A 15 23 1 14 12 N XX BA 50 functional genomic HSEs XX CC triple repeat of the 5-bp unit in NGAANNTTCNNGAAN orientation XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00166 XX ID I$HSF_05 XX DT 22.06.1995 (created); ewi. DT 27.03.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (Drosophila) XX BF T00386; HSTF; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 12 14 1 23 N 02 1 5 1 43 T 03 0 0 2 48 T 04 0 50 0 0 C 05 1 4 14 31 T 06 31 14 4 1 A 07 0 0 50 0 G 08 48 2 0 0 A 09 43 1 5 1 A 10 23 1 14 12 N 11 31 14 4 1 A 12 0 0 50 0 G 13 48 2 0 0 A 14 43 1 5 1 A 15 23 1 14 12 N XX BA 50 functional genomic HSEs XX CC triple repeat of the 5-bp unit in NTTCNNGAANNGAAN orientation XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00167 XX ID F$HSF_02 XX DT 22.06.1995 (created); ewi. DT 27.03.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (yeast) XX BF T00385; HSF1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 28 6 12 4 A 02 0 0 48 2 G 03 46 0 2 2 A 04 46 0 2 2 A 05 12 19 8 11 N 06 28 6 12 4 A 07 0 0 48 2 G 08 46 0 2 2 A 09 46 0 2 2 A 10 12 19 8 11 N 11 28 6 12 4 A 12 0 0 48 2 G 13 46 0 2 2 A 14 46 0 2 2 A 15 12 19 8 11 N XX BA 50 functional genomic HSEs XX CC triple repeat of the 5-bp unit in NGAANNGAANNGAAN orientation XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00168 XX ID F$HSF_03 XX DT 22.06.1995 (created); ewi. DT 27.03.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (yeast) XX BF T00385; HSF1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 28 6 12 4 A 02 0 0 48 2 G 03 46 0 2 2 A 04 46 0 2 2 A 05 12 19 8 11 N 06 28 6 12 4 A 07 0 0 48 2 G 08 46 0 2 2 A 09 46 0 2 2 A 10 12 19 8 11 N 11 11 8 19 12 N 12 2 2 0 46 T 13 2 2 0 46 T 14 2 48 0 0 C 15 4 12 6 28 T XX BA 50 functional genomic HSEs XX CC 50 functional genomic HSEstriple repeat of the 5-bp unit in NGAANNGAANNTTCN orientation XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00169 XX ID F$HSF_04 XX DT 22.06.1995 (created); ewi. DT 27.03.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (yeast) XX BF T00385; HSF1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 28 6 12 4 A 02 0 0 48 2 G 03 46 0 2 2 A 04 46 0 2 2 A 05 12 19 8 11 N 06 11 8 19 12 N 07 2 2 0 46 T 08 2 2 0 46 T 09 2 48 0 0 C 10 4 12 6 28 T 11 28 6 12 4 A 12 0 0 48 2 G 13 46 0 2 2 A 14 46 0 2 2 A 15 12 19 8 11 N XX BA 50 functional genomic HSEs XX CC triple repeat of the 5-bp unit in NGAANNTTCNNGAAN orientation XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00170 XX ID F$HSF_05 XX DT 22.06.1995 (created); ewi. DT 28.03.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF XX DE heat shock factor (yeast) XX BF T00385; HSF1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 11 8 19 12 N 02 2 2 0 46 T 03 2 2 0 46 T 04 2 48 0 0 C 05 4 12 6 28 T 06 28 6 12 4 A 07 0 0 48 2 G 08 46 0 2 2 A 09 46 0 2 2 A 10 12 19 8 11 N 11 28 6 12 4 A 12 0 0 48 2 G 13 46 0 2 2 A 14 46 0 2 2 A 15 12 19 8 11 N XX BA 50 functional genomic HSEs XX CC triple repeat of the 5-bp unit in NTTCNNGAANNGAAN orientation XX RN [1]; RE0002210. RX PUBMED: 8121800. RA Fernandes M., Xiao H., Lis J. T. RT Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions RL Nucleic Acids Res. 22:167-173 (1994). XX // AC M00171 XX ID I$ADF1_Q6 XX DT 28.08.1995 (created); dbo. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Adf-1 XX DE Adf-1 XX BF T00008; Adf-1; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0 6 3 2 C 02 2 7 1 1 C 03 0 0 11 0 G 04 1 8 0 2 C 05 0 5 2 4 Y 06 0 0 11 0 G 07 1 7 0 3 C 08 1 4 1 5 Y 09 0 0 11 0 G 10 1 6 0 4 Y 11 2 5 2 2 N 12 0 0 11 0 G 13 2 9 0 0 C 14 2 6 2 1 C 15 0 2 6 3 G 16 4 3 4 0 V XX BA 11 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00172 XX ID V$AP1FJ_Q2 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX DE activator protein 1 XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00032; AP-1; Species: mouse, Mus musculus. BF T01156; AP-1; Species: gibbon ape, Hylobates lar. BF T00123; c-Fos; Species: human, Homo sapiens. BF T00122; c-Fos; Species: mouse, Mus musculus. BF T00124; c-Fos; Species: rat, Rattus norvegicus. BF T00125; c-Fos; Species: chick, Gallus gallus. BF T02205; c-Fos; Species: Japanese pufferfish, Fugu rubripes. BF T00134; c-Jun; Species: chick, Gallus gallus. BF T01976; c-Jun; Species: Japanese quail, Coturnix coturnix japonica. BF T00131; c-Jun; Species: mouse, Mus musculus. BF T00132; c-Jun; Species: rat, Rattus norvegicus. BF T00133; c-Jun; Species: human, Homo sapiens. BF T02830; c-Jun; Species: domestic pig, Sus scrofa. XX P0 A C G T 01 6 2 8 1 R 02 3 5 9 0 S 03 0 0 0 17 T 04 0 0 17 0 G 05 17 0 0 0 A 06 0 16 0 1 C 07 3 2 3 9 T 08 4 7 2 4 N 09 9 6 1 1 M 10 4 3 7 3 N 11 6 3 1 7 W XX BA 17 compiled binding sites for AP-1, c-Jun, c-Jun/c-Fos XX CC TRANSFAC Sites of quality <= 2 XX // AC M00173 XX ID V$AP1_Q2 XX DT 28.08.1995 (created); dbo. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX DE activator protein 1 XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00027; AP-1; Species: clawed frog, Xenopus. BF T00030; AP-1; Species: monkey, Cercopithecus aethiops. BF T00031; AP-1; Species: rat, Rattus norvegicus. BF T00032; AP-1; Species: mouse, Mus musculus. BF T01115; AP-1; Species: hamster. BF T01140; AP-1; Species: chick, Gallus gallus. BF T01156; AP-1; Species: gibbon ape, Hylobates lar. XX P0 A C G T 01 6 1 7 0 R 02 3 5 6 0 S 03 0 0 0 14 T 04 0 0 14 0 G 05 14 0 0 0 A 06 0 13 0 1 C 07 2 1 2 9 T 08 4 6 2 2 N 09 8 4 1 1 A 10 2 2 7 3 N 11 6 1 1 6 W XX BA 14 compiled sequences XX CC TRANSFAC Sites of quality <= 2 XX // AC M00174 XX ID V$AP1_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX DE activator protein 1 XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00027; AP-1; Species: clawed frog, Xenopus. BF T00030; AP-1; Species: monkey, Cercopithecus aethiops. BF T00031; AP-1; Species: rat, Rattus norvegicus. BF T00032; AP-1; Species: mouse, Mus musculus. BF T01115; AP-1; Species: hamster. BF T01140; AP-1; Species: chick, Gallus gallus. BF T01156; AP-1; Species: gibbon ape, Hylobates lar. XX P0 A C G T 01 14 12 23 7 N 02 18 17 18 3 N 03 0 0 0 56 T 04 0 0 56 0 G 05 55 1 0 0 A 06 3 44 5 4 C 07 4 5 7 40 T 08 13 30 5 8 C 09 38 10 5 3 A 10 11 13 18 14 N 11 11 15 10 20 N XX BA 56 compiled sequences XX CC TRANSFAC Sites of quality <= 4 or = 6 XX // AC M00175 XX ID V$AP4_Q5 XX DT 28.08.1995 (created); dbo. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA AP-4 XX DE activator protein 4 XX BF T00036; AP-4; Species: human, Homo sapiens. XX P0 A C G T 01 2 3 2 0 V 02 2 0 2 3 D 03 0 7 0 0 C 04 7 0 0 0 A 05 0 0 7 0 G 06 0 7 0 0 C 07 1 0 1 5 T 08 0 2 5 0 G 09 1 1 3 2 N 10 1 1 2 3 N XX BA 7 compiled sequences XX CC TRANSFAC Sites of quality <= 5 XX // AC M00176 XX ID V$AP4_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA AP-4 XX DE activator protein 4 XX BF T00036; AP-4; Species: human, Homo sapiens. XX P0 A C G T 01 1 3 1 0 C 02 2 0 1 2 W 03 0 5 0 0 C 04 5 0 0 0 A 05 0 0 5 0 G 06 0 5 0 0 C 07 0 0 1 4 T 08 0 1 4 0 G 09 0 1 3 1 G 10 1 1 1 2 N XX BA 5 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00177 XX ID V$CREB_Q2 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CREB XX DE cAMP-response element-binding protein XX BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T01307; CREB; Species: hamster. BF T01380; CREB; Species: mink, Mustela vison. BF T01385; CREB; Species: cattle, Bos taurus. XX P0 A C G T 01 1 4 7 3 N 02 1 6 8 0 S 03 0 0 0 15 T 04 0 0 15 0 G 05 15 0 0 0 A 06 0 15 0 0 C 07 1 0 14 0 G 08 1 4 0 10 T 09 11 3 0 1 A 10 9 1 3 2 A 11 2 4 5 4 N 12 2 5 6 2 N XX BA 15 compiled sequences XX CC TRANSFAC Sites of quality <= 2 XX // AC M00178 XX ID V$CREB_Q4 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CREB XX DE cAMP-response element binding protein XX BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T01307; CREB; Species: hamster. BF T01380; CREB; Species: mink, Mustela vison. BF T01385; CREB; Species: cattle, Bos taurus. XX P0 A C G T 01 2 6 7 5 N 02 1 7 11 1 S 03 0 0 0 20 T 04 0 0 20 0 G 05 20 0 0 0 A 06 0 20 0 0 C 07 1 0 19 0 G 08 1 5 0 14 T 09 10 8 0 2 M 10 14 1 4 1 A 11 2 6 6 6 N 12 3 9 6 2 N XX BA 20 compiled sequences XX CC TRANSFAC Sites of quality <= 4 XX // AC M00179 XX ID V$CREBP1_Q2 XX DT 28.08.1995 (created); dbo. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CRE-BP1 XX DE CRE-binding protein 1 XX BF T00167; ATF-2; Species: human, Homo sapiens. BF T02056; CRE-BP1; Species: mouse, Mus musculus. XX P0 A C G T 01 2 2 3 0 V 02 0 2 4 1 G 03 0 0 0 7 T 04 0 0 7 0 G 05 7 0 0 0 A 06 0 7 0 0 C 07 0 0 7 0 G 08 0 1 0 6 T 09 4 3 0 0 M 10 5 0 1 1 A 11 1 4 2 0 C 12 1 2 1 3 N XX BA 7 compiled sequences XX CC TRANSFAC Sites of quality <= 2 XX // AC M00181 XX ID V$E2_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA E2 XX DE papilloma virus regulator E2 XX BF T00205; E2; Species: BPV-1, bovine papilloma virus type 1. XX P0 A C G T 01 5 5 7 2 N 02 7 5 3 4 N 03 18 0 0 1 A 04 4 14 1 0 C 05 1 18 0 0 C 06 6 2 9 2 R 07 7 3 4 5 N 08 7 4 2 6 N 09 11 3 3 2 A 10 6 7 2 4 N 11 1 15 0 3 C 12 0 0 19 0 G 13 0 0 19 0 G 14 0 0 0 19 T 15 7 3 8 1 R 16 5 9 4 1 N XX BA 19 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00182 XX ID P$GBP_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GBP XX DE G-box binding proteins XX P0 A C G T 01 4 1 6 5 N 02 4 2 8 2 N 03 4 7 1 4 N 04 0 9 5 2 S 05 16 0 0 0 A 06 0 16 0 0 C 07 0 0 16 0 G 08 0 1 0 15 T 09 2 4 9 1 G 10 4 2 8 2 N 11 2 11 2 1 C 12 8 5 3 0 M XX BA 16 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00183 XX ID V$MYB_Q6 XX DT 28.08.1995 (created); dbo. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA c-Myb XX DE c-Myb XX BF T00137; c-Myb; Species: human, Homo sapiens. BF T00138; c-Myb; Species: mouse, Mus musculus. BF T00139; c-Myb; Species: chick, Gallus gallus. XX P0 A C G T 01 4 6 6 2 N 02 3 5 3 7 N 03 3 7 3 5 N 04 17 1 0 0 A 05 18 0 0 0 A 06 0 18 0 0 C 07 1 2 5 10 T 08 3 1 10 4 G 09 2 6 7 3 N 10 1 10 3 4 C XX BA 18 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00184 XX ID V$MYOD_Q6 XX DT 28.08.1995 (created); dbo. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MyoD XX DE myoblast determining factor XX BF T00525; MyoD; Species: human, Homo sapiens. BF T00524; MyoD; Species: clawed frog, Xenopus laevis. BF T00526; MyoD; Species: mouse, Mus musculus. BF T01128; MyoD; Species: chick, Gallus gallus. XX P0 A C G T 01 5 2 3 4 N 02 3 5 5 1 N 03 0 14 0 0 C 04 14 0 0 0 A 05 1 7 3 3 C 06 0 12 1 1 C 07 0 0 0 14 T 08 0 0 14 0 G 09 2 4 2 6 N 10 0 9 0 5 Y XX BA 14 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00185 XX ID V$NFY_Q6 XX DT 28.08.1995 (created); dbo. DT 06.12.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA NF-Y XX DE nuclear factor Y (Y-box binding factor) XX BF T00084; CBF(2); Species: rat, Rattus norvegicus. BF T00087; CBF-A; Species: rat, Rattus norvegicus. BF T00088; CBF-B; Species: rat, Rattus norvegicus. BF T01595; CBF-C; Species: rat, Rattus norvegicus. BF T01171; CP1; Species: chinese hamster, Cricetulus longicaudatus. BF T02478; CP1C; Species: human, Homo sapiens. BF T00150; NF-Y; Species: human, Homo sapiens. BF T01203; NF-Y; Species: human, Homo sapiens. BF T00083; NF-Y; Species: mouse, Mus musculus. BF T00092; NF-Y; Species: mouse, Mus musculus. BF T00153; NF-Y; Species: mouse, Mus musculus. BF T00613; NF-Y; Species: mouse, Mus musculus. BF T01202; NF-Y; Species: mouse, Mus musculus. BF T00157; NF-YA; Species: human, Homo sapiens. BF T01804; NF-YA; Species: human, Homo sapiens. BF T00615; NF-YA; Species: mouse, Mus musculus. BF T00154; NF-YB; Species: human, Homo sapiens. BF T00616; NF-YB; Species: mouse, Mus musculus. BF T02477; NF-YC; Species: mouse, Mus musculus. XX P0 A C G T 01 2 3 4 11 T 02 11 3 6 0 R 03 11 1 7 1 R 04 0 20 0 0 C 05 0 20 0 0 C 06 20 0 0 0 A 07 17 2 1 0 A 08 0 0 0 20 T 09 3 10 6 1 S 10 11 0 6 3 R 11 1 8 7 4 N XX BA 20 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00186 XX ID V$SRF_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA SRF XX DE serum response factor XX BF T00672; SRF; Species: human, Homo sapiens. BF T00764; SRF; Species: human, Homo sapiens. BF T00761; SRF; Species: chick, Gallus gallus. BF T00762; SRF; Species: cat, Felis silvestris catus. BF T00766; SRF; Species: rat, Rattus norvegicus. BF T00765; SRF (504 AA); Species: mouse, Mus musculus. XX P0 A C G T 01 2 4 11 4 G 02 3 4 7 7 N 03 0 21 0 0 C 04 0 21 0 0 C 05 19 0 0 2 A 06 9 1 0 11 W 07 19 0 1 1 A 08 1 2 1 17 T 09 17 0 1 3 A 10 10 2 2 7 W 11 0 0 21 0 G 12 0 0 20 1 G 13 9 7 5 0 M 14 4 9 5 3 N XX BA 21 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00187 XX ID V$USF_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA USF XX DE upstream stimulating factor XX BF T00870; USF; Species: hamster. BF T00872; USF; Species: chick, Gallus gallus. BF T00876; USF; Species: duck, Cairina moschata. BF T00875; USF-1; Species: rat, Rattus norvegicus. BF T00877; USF-1; Species: mouse, Mus musculus. BF T00874; USF1; Species: human, Homo sapiens. BF T00924; USF1:USF2; Species: rat, Rattus norvegicus. BF T05262; USF1:USF2; Species: rat, Rattus norvegicus. BF T02115; USF2; Species: rat, Rattus norvegicus. XX P0 A C G T 01 1 3 7 1 G 02 2 4 0 6 Y 03 0 12 0 0 C 04 12 0 0 0 A 05 0 12 0 0 C 06 2 0 8 2 G 07 1 1 3 7 T 08 0 1 10 1 G 09 3 1 5 3 N 10 0 7 2 3 C XX BA 12 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00188 XX ID V$AP1_Q4 XX DT 28.08.1995 (created); dbo. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX DE activator protein 1 XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00027; AP-1; Species: clawed frog, Xenopus. BF T00030; AP-1; Species: monkey, Cercopithecus aethiops. BF T00031; AP-1; Species: rat, Rattus norvegicus. BF T00032; AP-1; Species: mouse, Mus musculus. BF T01115; AP-1; Species: hamster. BF T01140; AP-1; Species: chick, Gallus gallus. BF T01156; AP-1; Species: gibbon ape, Hylobates lar. XX P0 A C G T 01 10 2 10 1 R 02 5 6 12 0 G 03 0 0 0 23 T 04 0 0 23 0 G 05 22 0 1 0 A 06 0 21 0 2 C 07 2 2 2 17 T 08 9 9 3 2 M 09 16 5 1 1 A 10 3 6 10 4 N 11 6 4 3 10 N XX BA 23 compiled sequences XX CC TRANSFAC Sites of quality <= 4 XX // AC M00189 XX ID V$AP2_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA AP-2 XX DE activator protein 2 XX BF T00952; AP-2; Species: clawed frog, Xenopus laevis. BF T00033; AP-2alpha; Species: mouse, Mus musculus. BF T00035; AP-2alphaA; Species: human, Homo sapiens. BF T02469; AP-2beta; Species: mouse, Mus musculus. BF T02468; AP-2gamma; Species: human, Homo sapiens. BF T02470; AP-2gamma; Species: mouse, Mus musculus. XX P0 A C G T 01 4 6 3 0 M 02 3 0 6 4 K 03 0 11 0 2 C 04 0 13 0 0 C 05 0 12 0 1 C 06 2 5 6 0 S 07 2 8 3 0 C 08 4 5 3 1 N 09 1 1 10 1 G 10 2 2 9 0 G 11 3 9 1 0 C 12 1 3 8 1 G XX BA 13 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00190 XX ID V$CEBP_Q2 XX DT 28.08.1995 (created); dbo. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA C/EBP XX DE CCAAT/enhancer binding factor XX BF T01388; C/EBP; Species: clawed frog, Xenopus laevis. BF T00104; C/EBPalpha; Species: mouse, Mus musculus. BF T00108; C/EBPalpha; Species: rat, Rattus norvegicus. BF T00105; C/EBPalpha; Species: human, Homo sapiens. BF T00107; C/EBPalpha; Species: chick, Gallus gallus. XX P0 A C G T 01 24 10 13 15 N 02 14 17 15 16 N 03 31 9 13 9 A 04 0 4 0 58 T 05 0 0 0 62 T 06 8 0 49 5 G 07 5 39 10 8 C 08 22 4 22 14 N 09 15 13 7 27 N 10 36 13 5 8 A 11 43 3 12 4 A 12 15 10 15 22 N 13 16 8 17 21 N 14 21 15 12 14 N XX BA 62 compiled sequences XX CC TRANSFAC Sites of quality <= 2 XX // AC M00191 XX ID V$ER_Q6 XX DT 28.08.1995 (created); dbo. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA ER XX DE estrogen receptor XX BF T00261; ER-alpha; Species: human, Homo sapiens. BF T00258; ER-alpha; Species: rat, Rattus norvegicus. BF T00259; ER-alpha; Species: mouse, Mus musculus. BF T00264; ER-alpha; Species: chick, Gallus gallus. XX P0 A C G T 01 6 4 4 6 N 02 4 9 3 4 N 03 12 4 3 1 A 04 6 1 11 2 R 05 3 2 11 4 G 06 3 3 4 10 N 07 3 10 3 4 C 08 11 2 4 3 A 09 4 9 3 4 N 10 3 6 3 8 N 11 2 3 9 6 N 12 0 1 0 19 T 13 1 0 19 0 G 14 20 0 0 0 A 15 0 18 2 0 C 16 1 18 1 0 C 17 2 7 2 9 Y 18 7 1 8 4 N 19 8 5 3 4 N XX BA 20 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00192 XX ID V$GR_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GR XX DE glucocorticoid receptor XX BF T00335; GR; Species: mouse, Mus musculus. BF T00333; GR; Species: rat, Rattus norvegicus. BF T00334; GR; Species: chick, Gallus gallus. BF T00336; GR; Species: cat, Felis silvestris catus. BF T00337; GR-alpha; Species: human, Homo sapiens. BF T01920; GR-beta; Species: human, Homo sapiens. XX P0 A C G T 01 9 6 9 14 N 02 8 8 14 8 N 03 8 4 18 8 N 04 9 8 17 4 N 05 9 9 7 13 N 06 14 9 4 11 N 07 5 22 6 5 C 08 15 8 6 9 N 09 12 13 4 9 N 10 10 3 3 22 T 11 8 10 15 5 N 12 0 0 0 38 T 13 0 0 38 0 G 14 4 1 0 33 T 15 4 9 6 19 N 16 2 30 5 1 C 17 9 5 0 24 T 18 12 8 6 12 N 19 8 9 12 9 N XX BA 38 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00193 XX ID V$NF1_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA NF-1 XX DE nuclear factor 1 XX BF T00539; NF-1; Species: human, Homo sapiens. BF T00533; NF-1; Species: cat, Felis silvestris catus. BF T00534; NF-1; Species: monkey, Cercopithecus aethiops. BF T00535; NF-1; Species: rat, Rattus norvegicus. BF T00536; NF-1; Species: clawed frog, Xenopus. BF T00537; NF-1; Species: mouse, Mus musculus. BF T01036; NF-1; Species: hamster. BF T01298; NF-1; Species: sheep, Ovis aries. BF T00538; NF-1; Species: domestic pig, Sus scrofa. XX P0 A C G T 01 17 18 14 26 N 02 17 24 14 20 N 03 5 11 1 58 T 04 0 0 1 74 T 05 0 0 75 0 G 06 1 0 74 0 G 07 5 67 2 1 C 08 30 13 8 19 N 09 23 20 20 12 N 10 16 16 32 11 N 11 20 19 18 18 N 12 34 7 19 15 N 13 10 17 27 21 N 14 10 41 9 15 C 15 11 40 12 12 C 16 30 18 9 18 N 17 27 12 21 15 N 18 22 14 20 19 N XX BA 75 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00194 XX ID V$NFKB_Q6 XX DT 28.08.1995 (created); dbo. DT 06.12.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA NF-kappaB XX DE NF-kappaB XX BF T00587; NF-kappaB; Species: rat, Rattus norvegicus. BF T00588; NF-kappaB; Species: mouse, Mus musculus. BF T00590; NF-kappaB; Species: human, Homo sapiens. BF T00593; p50; Species: human, Homo sapiens. BF T00389; p50; Species: rat, Rattus norvegicus. BF T01923; p50; Species: mouse, Mus musculus. XX P0 A C G T 01 4 1 4 4 N 02 2 0 8 3 G 03 0 0 11 2 G 04 0 0 13 0 G 05 1 0 12 0 G 06 13 0 0 0 A 07 6 6 0 1 M 08 1 1 2 9 T 09 0 3 0 10 T 10 1 3 0 9 T 11 1 12 0 0 C 12 0 12 0 1 C 13 2 4 3 4 N 14 3 4 3 3 N XX BA 13 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00195 XX ID V$OCT1_Q6 XX DT 28.08.1995 (created); dbo. DT 18.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE octamer factor 1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. XX P0 A C G T 01 11 6 11 2 N 02 10 3 8 9 N 03 12 6 9 3 N 04 9 7 3 11 N 05 24 1 3 2 A 06 1 1 1 27 T 07 3 1 25 1 G 08 2 22 1 5 C 09 23 2 3 2 A 10 29 0 1 0 A 11 27 0 1 2 A 12 1 1 7 21 T 13 6 12 4 8 N 14 19 7 3 1 A 15 2 11 11 6 N XX BA 30 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00196 XX ID V$SP1_Q6 XX DT 28.08.1995 (created); dbo. DT 18.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Sp1 XX DE stimulating protein 1 XX BF T00754; Sp1; Species: rat, Rattus norvegicus. BF T00752; Sp1; Species: mouse, Mus musculus. BF T00759; Sp1; Species: human, Homo sapiens. XX P0 A C G T 01 32 21 35 20 N 02 24 20 56 8 G 03 14 10 65 19 G 04 17 1 89 1 G 05 0 0 108 0 G 06 0 2 106 0 G 07 19 80 0 9 C 08 2 5 99 2 G 09 0 1 99 8 G 10 21 5 76 6 G 11 17 10 72 9 G 12 3 55 21 29 Y 13 9 40 32 27 N XX BA 108 compiled sequences XX CC TRANSFAC Sites of quality <= 6 XX // AC M00197 XX ID F$ABF_C XX DT 05.09.1995 (created); dbo. DT 29.10.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA ABF1 XX DE transcriptional activator binding to ARS sequences XX BF T00056; ABF1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 3.20 4.03 3.02 4.99 N 02 9.97 0.00 5.26 0.00 R 03 0.00 0.00 0.00 15.24 T 04 0.00 15.24 0.00 0.00 C 05 10.54 0.65 2.34 1.70 A 06 0.00 8.13 0.00 7.10 Y 07 1.45 1.63 2.95 9.20 T 08 6.11 3.56 2.40 3.17 N 09 2.52 2.99 2.28 7.45 N 10 6.94 4.02 1.87 2.42 N 11 5.85 1.92 3.93 3.53 N 12 15.24 0.00 0.00 0.00 A 13 0.00 15.24 0.00 0.00 C 14 0.00 0.00 15.24 0.00 G 15 5.83 0.00 3.21 5.36 W XX BA total weight of sequences: 15.24 XX CC consind generated matrix (random_expectation: 0.17) XX // AC M00198 XX ID F$GAL4_C XX DT 05.09.1995 (created); dbo. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GAL4 XX DE GAL4 XX BF T00302; GAL4; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 1.49 1.56 0.80 5.97 T 02 0.69 9.85 0.00 0.00 C 03 0.00 0.00 10.53 0.00 G 04 0.00 0.94 9.60 0.00 G 05 4.79 2.36 2.51 0.87 N 06 1.66 3.36 3.92 1.60 N 07 3.24 4.32 2.17 0.80 N 08 5.64 0.00 2.68 2.21 A 09 1.52 7.43 1.58 0.00 C 10 3.31 0.00 0.00 7.22 T 11 0.80 3.21 4.09 2.43 N 12 0.00 2.55 0.80 7.19 T 13 0.78 5.62 2.52 1.62 C 14 0.0 4.72 3.17 2.65 B 15 1.62 0.87 2.39 5.66 T 16 0.00 9.66 0.87 0.00 C 17 0.00 10.53 0.00 0.00 C 18 0.00 0.00 10.53 0.00 G 19 6.73 0.00 0.97 2.84 A 20 5.93 0.00 3.89 0.72 R 21 2.52 6.34 0.87 0.00 C 22 2.52 0.78 5.52 1.72 G XX BA total weight of sequences: 10.53 XX CC consind generated matrix (random_expectation: 0.04) XX // AC M00199 XX ID V$AP1_C XX DT 05.09.1995 (created); dbo. DT 26.09.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX DE AP-1 binding site XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00027; AP-1; Species: clawed frog, Xenopus. BF T00030; AP-1; Species: monkey, Cercopithecus aethiops. BF T00031; AP-1; Species: rat, Rattus norvegicus. BF T00032; AP-1; Species: mouse, Mus musculus. BF T01115; AP-1; Species: hamster. BF T01132; AP-1; Species: fruit fly, Drosophila melanogaster. BF T01140; AP-1; Species: chick, Gallus gallus. BF T01156; AP-1; Species: gibbon ape, Hylobates lar. BF T00028; YAP1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 4.79 2.30 3.06 1.30 N 02 0.00 0.00 0.00 12.15 T 03 0.00 0.00 9.83 2.32 G 04 11.28 0.00 0.00 0.87 A 05 1.28 4.71 6.16 0.00 S 06 0.00 0.00 0.00 12.15 T 07 1.46 10.70 0.00 0.00 C 08 12.15 0.00 0.00 0.00 A 09 0.89 1.22 5.91 2.17 G XX BA total weight of sequences: 12.15 XX CC consind generated matrix (random_expectation: 1.08) XX // AC M00200 XX ID V$CAAT_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CCAAT XX DE Retroviral CCAAT box XX P0 A C G T 01 6.20 0.93 2.31 0.83 A 02 0.00 10.28 0.00 0.00 C 03 0.00 10.28 0.00 0.00 C 04 10.28 0.00 0.00 0.00 A 05 10.28 0.00 0.00 0.00 A 06 2.31 0.44 0.00 7.52 T 07 1.38 7.98 0.00 0.92 C 08 8.19 1.44 0.00 0.64 A 09 3.86 3.30 2.28 0.83 N 10 0.00 7.78 0.00 2.50 C 11 2.75 1.90 1.69 3.94 N 12 2.22 3.51 2.31 2.23 N 13 2.31 0.93 5.62 1.41 G 14 0.00 10.28 0.00 0.00 C 15 0.93 3.17 0.83 5.35 Y 16 0.00 3.74 0.93 5.60 Y 17 0.00 5.27 2.79 2.22 S 18 2.22 2.31 1.41 4.33 N 19 0.00 8.70 0.00 1.58 C 20 2.41 1.38 5.08 1.41 N 21 0.83 8.16 0.00 1.29 C 22 3.63 0.93 0.83 4.88 W 23 3.16 1.41 1.38 4.33 N 24 3.16 4.19 0.00 2.93 N 25 0.00 0.69 2.35 7.24 T XX BA total weight of sequences: 10.28 XX CC consind generated matrix (random_expectation: < 0.01) XX // AC M00201 XX ID V$CEBP_C XX DT 05.09.1995 (created); dbo. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA C/EBP XX DE C/EBP binding site XX BF T00104; C/EBPalpha; Species: mouse, Mus musculus. BF T00108; C/EBPalpha; Species: rat, Rattus norvegicus. BF T00105; C/EBPalpha; Species: human, Homo sapiens. XX P0 A C G T 01 2.57 1.73 3.05 1.87 N 02 0.90 0.76 6.74 0.82 G 03 3.20 0.79 0.90 4.33 W 04 3.96 2.75 2.51 0.0 V 05 0.0 0.0 0.0 9.22 T 06 0.0 0.0 4.03 5.19 K 07 3.29 1.67 0.85 3.41 N 08 0.0 2.2 3.53 3.49 K 09 0.0 0.91 8.31 0.0 G 10 0.9 4.78 0.0 3.54 Y 11 9.22 0.0 0.0 0.0 A 12 9.22 0.0 0.0 0.0 A 13 0.0 0.85 4.03 4.33 K 14 2.49 1.75 4.08 0.9 N 15 0.0 1.73 0.9 0.82 S 16 6.63 1.69 0.9 0.0 A 17 0.0 5.8 0.0 3.42 Y 18 4.72 0.9 1.82 1.78 A XX BA total weight of sequences: 9.22 XX CC consind generated matrix (random_expectation: 0.27) XX // AC M00202 XX ID B$CRP_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CRP XX DE CRP binding site XX P0 A C G T 01 1.74 2.52 1.71 3.43 N 02 6.07 2.56 0.78 0.00 A 03 7.56 0.97 0.00 0.87 A 04 0.97 2.55 0.00 5.88 T 05 4.43 0.00 1.71 3.26 W 06 6.79 0.90 0.84 0.87 A 07 4.39 1.68 0.00 2.55 W 08 0.91 0.97 0.00 7.53 T 09 0.00 0.00 7.82 1.59 G 10 0.00 1.65 0.00 7.75 T 11 1.68 0.00 7.72 0.00 G 12 6.91 0.78 0.00 1.71 A 13 1.65 1.81 1.61 4.33 N 14 0.00 3.33 3.49 2.58 N 15 2.65 1.65 2.56 2.55 N 16 4.39 0.00 3.33 1.68 R 17 2.65 2.62 2.45 1.68 N 18 1.78 1.80 4.14 1.68 N 19 0.90 0.97 0.00 7.53 T 20 0.84 7.66 0.00 0.90 C 21 6.66 0.90 0.87 0.97 A 22 1.78 6.85 0.00 0.78 C 23 5.92 1.74 0.91 0.84 A 24 0.97 3.26 1.78 3.40 N 25 1.67 0.91 0.00 6.82 T 26 2.61 0.90 0.87 5.01 W XX BA total weight of sequences: 9.40 XX CC consind generated matrix (random_expectation: 0.36) XX // AC M00203 XX ID V$GATA_C XX DT 05.09.1995 (created); dbo. DT 12.07.2000 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GATA-X XX DE GATA binding site XX BF T00305; GATA-1; Species: mouse, Mus musculus. BF T00267; GATA-1; Species: chick, Gallus gallus. BF T00306; GATA-1; Species: human, Homo sapiens. BF T00304; GATA-1A; Species: clawed frog, Xenopus laevis. BF T00307; GATA-2; Species: chick, Gallus gallus. BF T00567; GATA-2; Species: chick, Gallus gallus. BF T01302; GATA-2; Species: mouse, Mus musculus. BF T00308; GATA-2; Species: human, Homo sapiens. BF T00309; GATA-2; Species: clawed frog, Xenopus laevis. BF T00311; GATA-3; Species: human, Homo sapiens. BF T00310; GATA-3; Species: mouse, Mus musculus. BF T00313; GATA-3; Species: cat, Felis silvestris catus. BF T00314; GATA-3; Species: chick, Gallus gallus. BF T00312; GATA-3; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 6.39 0.00 4.00 4.40 N 02 0.00 0.00 16.31 0.00 G 03 16.31 0.00 0.00 0.00 A 04 0.00 0.82 0.00 15.49 T 05 16.31 0.00 0.00 0.00 A 06 10.80 1.40 2.62 0.91 A 07 4.32 0.84 10.31 0.84 G 08 4.04 2.95 5.08 4.25 N 09 5.74 6.76 2.29 1.52 M 10 4.46 7.12 0.68 4.05 N 11 4.78 4.08 1.63 5.82 N XX BA total weight of sequences: 16.31 XX CC consind generated matrix (random_expectation: 2.62) XX // AC M00204 XX ID F$GCN4_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GCN4 XX DE GCN4 XX BF T00321; GCN4; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 2.69 2.46 1.74 0.81 N 02 5.18 0.00 2.52 0.00 A 03 4.30 0.00 2.43 0.97 R 04 0.00 0.00 0.00 7.70 T 05 0.00 0.00 7.70 0.00 G 06 7.70 0.00 0.00 0.00 A 07 0.00 6.01 0.00 1.68 C 08 0.00 0.00 0.00 7.70 T 09 0.00 7.70 0.00 0.00 C 10 3.40 1.65 0.00 1.88 W XX BA total weight of sequences: 7.70 XX CC consind generated matrix (random_expectation: 0.22) XX // AC M00205 XX ID V$GRE_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GR XX DE Glucocorticoid response element XX BF T00335; GR; Species: mouse, Mus musculus. BF T00333; GR; Species: rat, Rattus norvegicus. BF T00334; GR; Species: chick, Gallus gallus. BF T00336; GR; Species: cat, Felis silvestris catus. BF T00337; GR-alpha; Species: human, Homo sapiens. XX P0 A C G T 01 0.00 0.86 5.10 2.39 G 02 0.00 0.00 5.94 2.40 G 03 0.00 1.68 0.75 5.16 T 04 6.74 0.00 0.00 0.86 A 05 0.00 6.62 0.00 1.73 C 06 5.91 2.43 0.00 0.00 A 07 4.88 0.97 1.64 0.86 A 08 2.52 0.82 1.68 3.33 N 09 2.61 3.09 2.65 0.00 N 10 1.61 0.00 0.00 6.73 T 11 0.00 0.00 8.34 0.00 G 12 0.00 0.00 0.00 8.34 T 13 0.00 2.69 0.80 4.86 Y 14 0.00 8.34 0.00 0.00 C 15 0.00 0.00 0.00 8.34 T 16 0.00 0.97 2.59 2.29 K XX BA total weight of sequences: 8.34 XX CC consind generated matrix (random_expectation: 0.06) XX // AC M00206 XX ID V$HNF1_C XX DT 05.09.1995 (created); dbo. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA HNF-1 XX DE Hepatic nuclear factor 1 XX BF T01211; HNF-1alpha; Species: mouse, Mus musculus. BF T00369; HNF-1alpha; Species: rat, Rattus norvegicus. BF T00368; HNF-1alpha-A; Species: human, Homo sapiens. XX P0 A C G T 01 3.65 0.0 2.46 2.81 D 02 0.0 0.0 8.91 0.0 G 03 0.00 1.58 1.55 5.78 T 04 0.00 1.87 0.00 7.04 T 05 8.07 0.00 0.84 0.00 A 06 7.36 0.00 0.74 0.81 A 07 0.97 0.00 0.00 7.94 T 08 0.00 0.90 1.65 1.90 K 09 7.43 0.78 0.00 0.71 A 10 3.68 0.00 0.71 4.52 W 11 0.00 0.00 0.00 8.91 T 12 4.20 1.55 0.94 2.23 N 13 6.59 0.00 0.94 1.39 A 14 2.87 6.04 0.00 0.00 C 15 0.94 5.49 0.00 2.49 C 16 5.71 0.68 0.00 2.52 A 17 4.84 3.20 0.87 0.00 M XX BA total weight of sequences: 8.91 XX CC consind generated matrix (random_expectation: 0.11) XX // AC M00207 XX ID F$LAC9_C XX DT 05.09.1995 (created); dbo. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA LAC9 XX DE LAC9 binding site XX BF T00458; LAC9; Species: yeast, Kluyveromyces lactis. XX P0 A C G T 01 0.87 1.68 1.86 1.84 N 02 0.00 0.00 0.00 6.26 T 03 0.93 0.93 0.00 0.00 M 04 0.84 0.00 1.87 3.55 K 05 0.00 6.26 0.00 0.00 C 06 0.00 0.00 6.26 0.00 G 07 0.00 0.00 6.26 0.00 G 08 4.48 0.90 0.87 0.00 A 09 3.58 0.90 0.00 1.77 A 10 0.93 1.75 0.93 2.65 N 11 3.52 0.00 0.00 2.74 W 12 0.00 4.39 0.00 1.86 C 13 0.84 0.00 0.00 4.51 T 14 0.00 0.84 2.80 2.62 K 15 0.00 2.55 0.90 2.80 Y 16 2.59 0.87 1.86 0.94 N 17 1.68 2.71 1.86 0.0 V 18 0.94 0.0 0.0 5.32 T 19 0.00 6.26 0.00 0.00 C 20 0.00 6.26 0.00 0.00 C 21 0.00 0.90 5.35 0.00 G 22 1.86 0.94 1.75 1.71 N XX BA total weight of sequences: 6.26 XX CC consind generated matrix (random_expectation: < 0.01) XX // AC M00208 XX ID V$NFKB_C_M00208 XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA NF-kappaB_M00208 XX DE NF-kappaB binding site XX BF T00587; NF-kappaB; Species: rat, Rattus norvegicus. BF T00588; NF-kappaB; Species: mouse, Mus musculus. BF T00590; NF-kappaB; Species: human, Homo sapiens. BF T00593; p50; Species: human, Homo sapiens. BF T00394; p52; Species: human, Homo sapiens. XX P0 A C G T 01 5.81 2.92 9.86 3.31 N 02 0.00 0.00 22.49 0.00 G 03 0.00 0.00 22.49 0.00 G 04 0.00 0.00 22.49 0.00 G 05 22.49 0.00 0.00 0.00 A 06 4.03 12.56 0.00 5.31 C 07 1.41 0.00 0.00 21.08 T 08 0.00 5.94 0.00 16.55 T 09 0.00 6.90 0.00 15.59 T 10 1.21 20.68 0.00 0.00 C 11 0.78 21.71 0.00 0.00 C 12 13.10 4.81 2.60 1.98 A XX BA total weight of sequences: 22.49 XX CC consind generated matrix (random_expectation: 0.05) XX // XX AC M00208 XX ID V$NFKB_C_M00208_10x XX NA NF-kappaB_M00208 XX DE NF-kappaB binding site XX BF T00587; NF-kappaB; Species: rat, Rattus norvegicus. BF T00588; NF-kappaB; Species: mouse, Mus musculus. BF T00590; NF-kappaB; Species: human, Homo sapiens. BF T00593; p50; Species: human, Homo sapiens. BF T00394; p52; Species: human, Homo sapiens. XX P0 A C G T 01 58.1 29.2 98.6 33.1 N 02 0.00 0.00 224.9 0.00 G 03 0.00 0.00 224.9 0.00 G 04 0.00 0.00 224.9 0.00 G 05 224.9 0.00 0.00 0.00 A 06 40.3 125.6 0.00 53.1 C 07 14.1 0.00 0.00 210.8 T 08 0.00 59.4 0.00 165.5 T 09 0.00 69.0 0.00 155.9 T 10 12.1 206.8 0.00 0.00 C 11 7.8 217.1 0.00 0.00 C 12 131.0 48.1 26.0 19.8 A XX CC Added by GR, 31 Dec 2010, multiply by 10x for PASTAA. XX // AC M00209 XX ID V$NFY_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA NF-Y XX DE NF-Y binding site XX BF T00084; CBF(2); Species: rat, Rattus norvegicus. BF T00087; CBF-A; Species: rat, Rattus norvegicus. BF T00088; CBF-B; Species: rat, Rattus norvegicus. BF T00150; NF-Y; Species: human, Homo sapiens. BF T01203; NF-Y; Species: human, Homo sapiens. BF T00083; NF-Y; Species: mouse, Mus musculus. BF T00092; NF-Y; Species: mouse, Mus musculus. BF T00153; NF-Y; Species: mouse, Mus musculus. BF T00613; NF-Y; Species: mouse, Mus musculus. BF T01202; NF-Y; Species: mouse, Mus musculus. BF T00157; NF-YA; Species: human, Homo sapiens. BF T01804; NF-YA; Species: human, Homo sapiens. BF T00615; NF-YA; Species: mouse, Mus musculus. BF T00154; NF-YB; Species: human, Homo sapiens. BF T00616; NF-YB; Species: mouse, Mus musculus. XX P0 A C G T 01 1.87 1.76 0.90 2.54 N 02 0.00 4.46 0.91 1.70 C 03 0.00 0.00 0.00 7.07 T 04 0.00 0.00 7.07 0.00 G 05 7.07 0.00 0.00 0.00 A 06 0.00 0.00 0.00 7.07 T 07 0.00 0.00 0.00 7.07 T 08 0.00 0.00 7.07 0.00 G 09 0.00 0.00 7.07 0.00 G 10 0.00 3.50 0.00 3.56 Y 11 0.85 0.91 0.00 5.31 T 12 4.42 0.00 0.85 0.00 A 13 1.70 2.65 2.72 0.00 S 14 1.70 1.81 0.00 3.56 Y XX BA total weight of sequences: 7.07 XX CC consind generated matrix (random_expectation: < 0.01) XX // AC M00210 XX ID V$OCT_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA OCT-x XX DE Octamer binding site XX BF T00545; Oct-B1; Species: human, Homo sapiens. BF T01191; Oct-B1; Species: monkey, Cercopithecus aethiops. BF T00663; oct-B2; Species: human, Homo sapiens. BF T00664; oct-B3; Species: human, Homo sapiens. BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01192; POU2F1; Species: mouse, Mus musculus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. BF T00649; POU2F2; Species: cat, Felis silvestris catus. BF T00650; POU2F2; Species: rat, Rattus rattus. BF T01032; POU2F2; Species: chick, Gallus gallus. BF T00647; POU2F2; Species: human, Homo sapiens. BF T00646; POU2F2 (Oct-2.1); Species: human, Homo sapiens. BF T00648; POU2F2A; Species: mouse, Mus musculus. BF T00662; POU2F2B; Species: human, Homo sapiens. BF T00964; POU2F2B; Species: mouse, Mus musculus. BF T00665; POU2F2C; Species: human, Homo sapiens. XX P0 A C G T 01 2.16 5.21 0.97 1.83 C 02 0.86 0.00 0.83 8.48 T 03 1.79 4.62 2.16 1.59 N 04 8.76 1.40 0.00 0.00 A 05 0.00 0.00 0.00 10.17 T 06 0.00 0.00 0.00 10.17 T 07 1.52 0.00 0.00 8.64 T 08 0.00 0.00 8.64 1.52 G 09 0.00 10.17 0.00 0.00 C 10 9.23 0.00 0.93 0.00 A 11 0.00 0.00 0.00 10.17 T 12 6.68 0.00 2.52 0.97 A 13 1.34 4.78 0.65 3.39 Y XX BA total weight of sequences: 10.17 XX CC consind generated matrix (random_expectation: 0.05) XX // AC M00211 XX ID V$PADS_C XX DT 05.09.1995 (created); dbo. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Poly A downstream element XX DE Retroviral Poly A downstream element XX P0 A C G T 01 2.26 2.5 0.0 3.86 H 02 0.0 0.0 8.62 0.0 G 03 0.00 0.00 0.00 8.62 T 04 0.00 0.00 8.62 0.00 G 05 1.54 0.00 5.38 0.00 G 06 0.00 0.00 0.00 8.62 T 07 0.00 5.99 1.71 0.92 C 08 0.00 0.92 0.00 7.70 T 09 0.00 5.82 0.87 1.93 C XX BA total weight of sequences: 8.62 XX CC consind generated matrix (random_expectation: 0.52) XX // AC M00212 XX ID V$POLY_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Retroviral Poly A XX DE Retroviral Poly A signal XX P0 A C G T 01 1.26 5.55 1.74 1.35 C 02 9.89 0.00 0.00 0.00 A 03 6.30 0.00 1.36 2.24 A 04 0.00 0.00 0.00 9.89 T 05 9.89 0.00 0.00 0.00 A 06 9.89 0.00 0.00 0.00 A 07 9.89 0.00 0.00 0.00 A 08 4.08 1.46 1.30 0.92 A 09 0.00 8.59 0.00 0.63 C 10 0.00 5.10 1.36 2.15 C 11 1.36 2.78 0.00 4.47 Y 12 0.00 5.46 0.00 4.43 Y 13 0.71 4.16 0.81 4.22 Y 14 0.00 4.13 1.41 4.35 Y 15 1.45 0.96 3.46 4.02 K 16 0.00 7.83 2.07 0.00 C 17 0.18 0.00 0.00 9.72 T 18 0.60 2.80 4.28 2.22 N XX BA total weight of sequences: 9.89 XX CC consind generated matrix (random_expectation: 0.02) XX // AC M00213 XX ID F$RAP1_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA RAP1 XX DE yeast repressor/activator protein 1 XX BF T00715; RAP1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 6.89 2.40 0.79 4.74 W 02 8.80 0.00 4.58 1.43 R 03 7.20 6.83 0.79 0.00 M 04 14.82 0.00 0.00 0.00 A 05 0.00 14.82 0.00 0.00 C 06 0.00 14.82 0.00 0.00 C 07 0.00 14.82 0.00 0.00 C 08 14.82 0.00 0.00 0.00 A 09 2.13 0.67 2.87 9.15 T 10 11.92 0.76 1.49 0.64 A 11 0.76 14.06 0.00 0.00 C 12 11.45 3.36 0.00 0.00 A 13 0.79 5.64 0.00 7.10 Y 14 1.64 7.18 1.61 4.39 Y XX BA total weight of sequences: 14.82 XX CC consind generated matrix (random_expectation: 0.03) XX // AC M00214 XX ID V$SEF1_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA SEF-1 XX DE SEF1 binding site XX BF T00743; SEF-1 (1); Species: mouse, Mus musculus. XX P0 A C G T 01 6.26 0.90 0.97 0.00 A 02 6.26 0.00 1.87 0.00 A 03 0.00 6.62 0.97 0.54 C 04 7.19 0.94 0.00 0.00 A 05 0.00 2.81 0.00 0.00 C 06 0.00 1.91 6.22 0.00 G 07 0.00 0.94 6.22 0.00 G 08 7.23 0.90 0.00 0.00 A 09 0.00 0.90 0.97 5.32 T 10 6.22 0.00 1.91 0.00 A 11 0.00 0.94 0.90 6.29 T 12 0.00 8.13 0.00 0.00 C 13 0.00 0.00 0.00 8.13 T 14 0.00 0.00 8.13 0.00 G 15 0.00 0.90 0.00 7.23 T 16 0.00 0.00 8.13 0.00 G 17 0.00 0.00 8.13 0.00 G 18 0.00 0.00 0.00 8.13 T 19 1.54 3.53 0.00 3.06 Y XX BA total weight of sequences: 8.13 XX CC consind generated matrix (random_expectation: < 0.01) XX // AC M00215 XX ID V$SRF_C XX DT 05.09.1995 (created); dbo. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA SRF XX DE serum response factor XX BF T00672; SRF; Species: human, Homo sapiens. BF T00764; SRF; Species: human, Homo sapiens. BF T00761; SRF; Species: chick, Gallus gallus. BF T00762; SRF; Species: cat, Felis silvestris catus. BF T00766; SRF; Species: rat, Rattus norvegicus. BF T00763; SRF; Species: clawed frog, Xenopus laevis. BF T00765; SRF (504 AA); Species: mouse, Mus musculus. XX P0 A C G T 01 1.8 0.0 3.23 1.75 D 02 0.0 12.86 0.0 0.0 C 03 0.00 12.86 0.00 0.00 C 04 7.14 1.19 0.00 4.52 W 05 2.65 0.00 0.00 10.20 T 06 9.47 0.00 0.93 2.45 A 07 0.93 1.22 0.00 10.71 T 08 10.80 0.00 0.00 2.06 A 09 3.52 0.00 0.00 9.34 T 10 0.00 0.00 12.86 0.00 G 11 0.00 0.00 12.86 0.00 G 12 3.18 6.16 2.13 1.39 N 13 1.68 7.87 2.45 0.85 C 14 6.73 2.52 0.00 3.61 W 15 1.46 2.49 4.63 4.28 N XX BA total weight of sequences: 12.86 XX CC consind generated matrix (random_expectation: 0.08) XX // AC M00216 XX ID V$TATA_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA TATA XX DE Retroviral TATA box XX BF T00796; TBP; Species: mouse, Mus musculus. BF T00794; TBP; Species: human, Homo sapiens. BF T00820; TFIID; Species: human, Homo sapiens. BF T00821; TFIID; Species: chick, Gallus gallus. BF T01159; TFIID; Species: mouse, Mus musculus. BF T01175; TFIID; Species: rat, Rattus norvegicus. XX P0 A C G T 01 3.00 3.89 2.48 3.99 N 02 0.00 10.19 2.66 0.52 C 03 0.33 3.33 0.00 9.71 T 04 9.76 0.00 0.00 3.61 A 05 0.00 0.00 0.00 13.36 T 06 13.36 0.00 0.00 0.00 A 07 12.40 0.00 0.00 0.96 A 08 13.36 0.00 0.00 0.00 A 09 13.36 0.00 0.00 0.00 A 10 3.92 1.36 6.11 1.97 R XX BA total weight of sequences: 13.36 XX CC consind generated matrix (random_expectation: 0.30) XX // AC M00217 XX ID V$USF_C XX DT 05.09.1995 (created); dbo. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA USF XX DE USF binding site XX BF T00870; USF; Species: hamster. BF T00872; USF; Species: chick, Gallus gallus. BF T00876; USF; Species: duck, Cairina moschata. BF T00875; USF-1; Species: rat, Rattus norvegicus. BF T00877; USF-1; Species: mouse, Mus musculus. BF T00874; USF1; Species: human, Homo sapiens. XX P0 A C G T 01 1.64 4.01 0.94 2.54 N 02 0.00 10.07 0.00 0.00 C 03 8.46 1.60 0.00 0.00 A 04 0.00 9.16 0.00 0.90 C 05 1.77 0.90 7.39 0.00 G 06 0.00 0.00 0.00 10.07 T 07 0.00 0.00 10.07 0.00 G 08 2.31 3.61 0.94 2.41 N XX BA total weight of sequences: 10.07 XX CC consind generated matrix (random_expectation: 2.19) XX // AC M00218 XX ID P$MYBPH3_01 XX DT 16.10.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MYB.Ph3 XX DE Myb-like protein of Petunia hybrida XX BF T01568; MYB.PH3; Species: Petunia hybrida. XX P0 A C G T 01 22 3 4 11 A 02 21 1 7 12 W 03 27 1 7 6 A 04 40 0 2 3 A 05 33 0 8 4 A 06 33 0 8 5 A 07 0 46 0 0 C 08 3 15 26 2 S 09 0 0 46 0 G 10 0 0 0 46 T 11 0 0 0 46 T 12 46 0 0 0 A 13 1 13 2 7 Y XX BA 46 selected binding sequences XX CC 5 rounds of selection of random 18-mers bound to in-vitro-translated protein; sequences that lead to the CNGTTA consensus XX RN [1]; RE0003450. RX PUBMED: 7737128. RA Solano R., Nieto C., Avila J., Canas L., Diaz I., Paz-Ares J. RT Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrida RL EMBO J. 14:1773-1784 (1995). XX // AC M00219 XX ID P$MYBPH3_02 XX DT 16.10.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA MYB.Ph3 XX DE Myb-like protein of Petunia hybrida XX BF T01568; MYB.PH3; Species: Petunia hybrida. XX P0 A C G T 01 12 1 6 6 N 02 12 2 7 4 R 03 11 2 8 4 R 04 25 0 0 1 A 05 0 0 27 0 G 06 0 0 3 24 T 07 0 0 0 27 T 08 23 0 0 4 A 09 0 0 27 0 G 10 0 0 0 27 T 11 0 0 0 27 T 12 23 0 4 0 A 13 1 5 4 1 S XX BA 27 selected binding sequences XX CC 5 rounds of selection of random 18-mers bound to in-vitro-translated protein; sequences that lead to the GTTAGTTA consensus XX RN [1]; RE0003450. RX PUBMED: 7737128. RA Solano R., Nieto C., Avila J., Canas L., Diaz I., Paz-Ares J. RT Dual DNA binding specificity of a petal epidermis-specific MYB transcription factor (MYB.Ph3) from Petunia hybrida RL EMBO J. 14:1773-1784 (1995). XX // AC M00220 XX ID V$SREBP1_01 XX DT 16.10.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA SREBP-1 XX DE sterol regulatory element-binding protein 1 XX BF T01559; SREBP-1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T01556; SREBP-1a; Species: human, Homo sapiens. BF T01557; SREBP-1b; Species: human, Homo sapiens. BF T01558; SREBP-1c; Species: human, Homo sapiens. BF T01562; SREBP-1c; Species: rat, Rattus norvegicus. XX P0 A C G T 01 4 10 11 5 N 02 23 1 5 1 A 03 1 1 0 28 T 04 0 30 0 0 C 05 30 0 0 0 A 06 0 27 1 2 C 07 2 6 22 0 G 08 0 0 0 30 T 09 0 0 30 0 G 10 21 3 1 2 A 11 2 12 5 11 Y XX BA 30 selected binding sequences XX CC 5 rounds of selection of random 16-mers bound to bacterially expressed protein; sequences that lead to the E-box consensus CACGTG XX RN [1]; RE0003451. RX PUBMED: 7739539. RA Kim J. B., Spotts G. D., Halvorsen Y.-D., Shih H.-M., Ellenberger T., Towle H. C., Spiegelman B. M. RT Dual DNA binding specificity of ADD1/SREBP1 controlled by a single amino acid in the basic helix-loop-helix domain RL Mol. Cell. Biol. 15:2582-2588 (1995). XX // AC M00221 XX ID V$SREBP1_02 XX DT 16.10.1995 (created); ewi. DT 16.10.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA SREBP-1 XX DE sterol regulatory element-binding protein 1 XX BF T01559; SREBP-1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T01556; SREBP-1a; Species: human, Homo sapiens. BF T01557; SREBP-1b; Species: human, Homo sapiens. BF T01558; SREBP-1c; Species: human, Homo sapiens. BF T01562; SREBP-1c; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 1 3 3 K 02 5 0 2 0 A 03 0 0 0 7 T 04 0 7 0 0 C 05 7 0 0 0 A 06 0 7 0 0 C 07 0 7 0 0 C 08 0 7 0 0 C 09 0 7 0 0 C 10 7 0 0 0 A 11 0 7 0 0 C XX BA 7 selected binding sequences XX CC 5 rounds of selection of random 16-mers bound to bacterially expressed protein; sequences that lead to a non-E-box consensus XX RN [1]; RE0003451. RX PUBMED: 7739539. RA Kim J. B., Spotts G. D., Halvorsen Y.-D., Shih H.-M., Ellenberger T., Towle H. C., Spiegelman B. M. RT Dual DNA binding specificity of ADD1/SREBP1 controlled by a single amino acid in the basic helix-loop-helix domain RL Mol. Cell. Biol. 15:2582-2588 (1995). XX // AC M00222 XX ID V$HAND1E47_01 XX DT 16.10.1995 (created); ewi. DT 23.03.2001 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Hand1:E47 XX DE Hand1:E47 heterodimer XX BF T00207; E47; Species: human, Homo sapiens. BF T01569; Hand1; Species: mouse, Mus musculus. XX P0 A C G T 01 12 5 4 8 N 02 10 5 4 10 N 03 8 2 8 11 N 04 4 4 13 8 N 05 5 2 18 4 G 06 4 10 8 7 N 07 10 0 16 3 R 08 2 2 0 25 T 09 1 27 1 0 C 10 0 0 0 29 T 11 0 0 29 0 G 12 0 3 25 1 G 13 10 13 1 5 M 14 15 1 3 10 W 15 6 5 3 15 T 16 5 5 4 15 T XX BA 29 selected binding sequences XX CC 5 rounds of selection of random 35-mers bound to bacterially expressed Hand1 plus purified E47 fragment; Hand1 is thought to bind to the left half (positions 1-8), E47 to the right half (position 9-16) XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003452. RX PUBMED: 7791788. RA Hollenberg S. M., Sternglanz R., Cheng P. F., Weintraub H. RT Identification of a new family of tissue-specific basic helix-loop-helix proteins with a two-hybrid system RL Mol. Cell. Biol. 15:3813-3822 (1995). XX // AC M00223 XX ID V$STAT_01 XX DT 29.11.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA STATx XX DE signal transducers and activators of transcription XX BF T01575; STAT1alpha; Species: mouse, Mus musculus. BF T01492; STAT1alpha; Species: human, Homo sapiens. BF T01573; STAT1beta; Species: human, Homo sapiens. BF T01494; STAT2; Species: human, Homo sapiens. BF T01493; STAT3; Species: human, Homo sapiens. BF T01574; STAT3; Species: mouse, Mus musculus. BF T01577; STAT4; Species: human, Homo sapiens. BF T01576; STAT4; Species: mouse, Mus musculus. BF T01579; STAT5A; Species: mouse, Mus musculus. BF T01578; STAT5A; Species: sheep, Ovis aries. BF T00944; STAT5B; Species: mouse, Mus musculus. BF T01581; STAT6; Species: mouse, Mus musculus. BF T01580; STAT6; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 0 14 T 02 0 0 0 14 T 03 2 12 0 0 C 04 0 12 0 2 C 05 0 9 2 3 C 06 4 2 8 0 G 07 0 0 8 6 K 08 13 1 0 0 A 09 14 0 0 0 A XX BA 14 genomic sequences of 14 different genes XX BS TTCCGGGAA; R07553; 1; 9;; p. BS TTCCGGGAA; R07554; 1; 9;; p. BS TTCCCGTAA; R07555; 1; 9;; p. BS TTCCCGTCA; R07556; 1; 9;; p. BS TTCCTGTAA; R07557; 1; 9;; p. BS TTCCCAGAA; R07558; 1; 9;; p. BS TTACTCTAA; R07559; 1; 9;; p. BS TTACTATAA; R07560; 1; 9;; p. BS TTCTCAGAA; R07561; 1; 9;; p. BS TTCCCGGAA; R07562; 1; 9;; p. BS TTCCCCGAA; R07563; 1; 9;; p. BS TTCTCGGAA; R07564; 1; 9;; p. BS TTCCCGTAA; R07565; 1; 9;; p. BS TTCCCAGAA; R07566; 1; 9;; p. XX CC compiled sequences XX RN [1]; RE0003481. RX PUBMED: 7774815. RA Horvath C. M., Wen Z., Darnell jr J. E. RT A STAT protein domain that determines DNA sequence recognition suggests a novel DNA-binding domain RL Genes Dev. 9:984-994 (1995). XX // AC M00224 XX ID V$STAT1_01 XX DT 30.11.1995 (created); ewi. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA STAT1 XX DE signal transducer and activator of transcription 1 XX BF T01575; STAT1alpha; Species: mouse, Mus musculus. BF T01492; STAT1alpha; Species: human, Homo sapiens. BF T01573; STAT1beta; Species: human, Homo sapiens. XX P0 A C G T 01 8.0 18.0 41.9 32.1 N 02 23.2 9.7 37.2 29.8 N 03 13.9 31.3 19.8 35.2 N 04 17.5 37.9 38.1 6.4 S 05 59.6 13.5 15.1 11.9 A 06 31.2 26.3 9.4 33.2 N 07 0 0 0 100 T 08 0 0 0 100 T 09 3.9 90.9 2 3.2 C 10 0 100 0 0 C 11 0 32.5 67.5 0 G 12 0 0 100 0 G 13 3.8 0 94.9 1.2 G 14 100 0 0 0 A 15 100 0 0 0 A 16 36.3 8.8 29.5 25.5 N 17 11.1 11.1 11.1 66.7 T 18 19.8 10.5 69.6 0 G 19 24.8 12.7 46.6 15.9 N 20 12.5 36.7 49.2 1.5 S 21 31.8 12.6 39.7 16 N XX BA 55 selected binding sequences XX CC sequences were selected from a pool of 76-mers by immunoprecipitating bound complexes from IFN-gamma-induced BUD 8 fibroblasts extracts with STAT1-specific antiserum XX RN [1]; RE0003481. RX PUBMED: 7774815. RA Horvath C. M., Wen Z., Darnell jr J. E. RT A STAT protein domain that determines DNA sequence recognition suggests a novel DNA-binding domain RL Genes Dev. 9:984-994 (1995). XX // AC M00225 XX ID V$STAT3_01 XX DT 30.11.1995 (created); ewi. DT 30.11.1995 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA STAT3 XX DE signal transducer and activator of transcription 3 XX BF T01493; STAT3; Species: human, Homo sapiens. BF T01574; STAT3; Species: mouse, Mus musculus. XX P0 A C G T 01 16.1 20.3 30.7 32.8 N 02 2.4 18 59.1 20.3 G 03 9.8 17.5 39.4 33.3 N 04 5 45.2 27.9 21.9 N 05 77.9 0.8 21.3 0 A 06 12.6 6.8 0 80.6 T 07 0 0 0 100 T 08 0 0 0 100 T 09 0 100 0 0 C 10 0 100 0 0 C 11 0 50 50 0 S 12 0 0 100 0 G 13 0 0 98.2 1.8 G 14 100 0 0 0 A 15 100 0 0 0 A 16 63.3 0 32.7 4 R 17 1.8 13.8 1.8 82.6 T 18 7.7 19.3 70 3 G 19 34.7 18.7 28 18.7 N 20 27.3 18.2 22.4 32.1 N 21 19.6 24.3 16 40.1 N XX BA 55 selected binding sequences XX CC sequences were selected from a pool of 76-mers by 5 rounds of gel shift and one supershift from EGF-treated COS-1 cell extracts with STAT3-specific antiserum XX RN [1]; RE0003481. RX PUBMED: 7774815. RA Horvath C. M., Wen Z., Darnell jr J. E. RT A STAT protein domain that determines DNA sequence recognition suggests a novel DNA-binding domain RL Genes Dev. 9:984-994 (1995). XX // AC M00226 XX ID P$P_01 XX DT 30.11.1995 (created); ewi. DT 16.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA P XX DE maize activator P of flavonoid biosynthetic genes XX BF T01590; P (long form); Species: maize, Zea mays. BF T01591; P (short form); Species: maize, Zea mays. XX P0 A C G T 01 25 3 4 4 A 02 2 28 3 3 C 03 0 31 0 5 C 04 17 0 0 19 W 05 36 0 0 0 A 06 0 36 0 0 C 07 1 34 0 1 C 08 11 13 4 8 N 09 6 8 15 7 N XX BA 36 selected binding sequences XX BS GGTAACTGT; R07567; 2; 9;; p. BS ACCTACCAA; R07568; 14; 9;; p. BS ACCTACCGT; R07569; 7; 9;; p. BS TCCTACCTA; R07570; 19; 9;; p. BS ACCAACCCG; R07571; 23; 9;; p. BS ACCAACCAA; R07572; 6; 9;; p. BS ACCTACCAC; R07573; 13; 9;; p. BS CCTAACCCG; R07574; 23; 9;; p. BS GTCAACCCG; R07575; 23; 9;; p. BS TCCAACCTG; R07576; 20; 9;; p. BS ACCTACCCG; R07577; 23; 9;; p. BS CCCAACATC; R07578; 11; 9;; p. BS ACCAACCTT; R07579; 19; 9;; p. BS GTCAACCTA; R07580; 3; 9;; p. BS ACCTACCCT; R07581; 10; 9;; p. BS ACCAACCAG; R07582; 8; 9;; p. BS ACCTACCCG; R07583; 23; 9;; p. BS AACAACCAC; R07584; 20; 9;; p. BS ACCTACCTC; R07585; 4; 9;; p. BS CCTAACCAC; R07586; 5; 9;; p. BS ACCTACCCG; R07587; 23; 9;; p. BS AGCTACCAT; R07588; 4; 9;; p. BS ACCTACCCG; R07589; 23; 9;; p. BS ACCTACCAA; R07590; 7; 9;; p. BS ATTAACCCG; R07591; 23; 9;; p. BS ACTAACCGT; R07592; 7; 9;; p. BS ACCTACCTC; R07593; 11; 9;; p. BS TACAACCCG; R07594; 23; 9;; p. BS ACCTACCCG; R07595; 23; 9;; p. BS ACCTACCGG; R07596; 7; 9;; p. BS TGCTACCCG; R07597; 23; 9;; p. BS ACCAACCTG; R07598; 16; 9;; p. BS ACCTACCCA; R07599; 19; 9;; p. BS ACCTACCAC; R07600; 14; 9;; p. BS ACCTACCAT; R07601; 16; 9;; p. BS GCCAACCAC; R07602; 19; 9;; p. XX CC selected from random 26-mers bound to bacterially expressed P protein by five rounds of selection and PCR amplification XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003548. RX PUBMED: 8313474. RA Grotewold E., Drummond B. J., Bowen B., Peterson T. RT The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset RL Cell 76:543-553 (1994). XX // AC M00227 XX ID V$VMYB_02 XX DT 30.11.1995 (created); ewi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA v-Myb XX DE v-Myb XX BF T00895; v-Myb; Species: AMV, avian myeloblastosis virus. XX P0 A C G T 01 3 8 6 11 N 02 4 13 9 3 S 03 0 13 0 16 Y 04 29 0 0 0 A 05 29 0 0 0 A 06 0 29 0 0 C 07 0 1 24 4 G 08 0 0 29 0 G 09 9 11 0 9 H XX BA 29 selected binding sequences XX CC selected from random 26-mers bound to bacterially expressed v-Myb protein by five rounds of selection and PCR amplification XX RN [1]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [2]; RE0003548. RX PUBMED: 8313474. RA Grotewold E., Drummond B. J., Bowen B., Peterson T. RT The myb-homologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosynthetic gene subset RL Cell 76:543-553 (1994). XX // AC M00228 XX ID V$VBP_01 XX DT 30.11.1995 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA VBP XX DE PAR-type chicken vitellogenin promoter-binding protein XX BF T00881; VBP; Species: chick, Gallus gallus. XX P0 A C G T 01 4 2 11 1 G 02 0 0 0 18 T 03 0 0 0 18 T 04 15 1 2 0 A 05 0 14 1 3 C 06 8 0 10 0 R 07 0 0 0 11 T 08 7 4 0 0 M 09 10 0 0 1 A 10 1 1 3 6 T XX BA 18 selected binding sequences XX CC sequences bound to bacterially expressed VBP were selected from random octadecamers by 5 cycles of selection and PCR amplification XX RN [1]; RE0003540. RX PUBMED: 7891686. RA Haas N. B., Cantwell C. A., Johnson P. F., Burch J. B. E. RT DNA-binding specificity of the PAR basic leucine zipper protein VBP partially overlaps those of the C/EBP and CREB/ATF families and is influenced by domains that flank the core basic region RL Mol. Cell. Biol. 15:1923-1932 (1995). XX // AC M00229 XX ID N$SKN1_01 XX DT 26.01.1996 (created); ewi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Skn-1 XX DE maternal gene product XX BF T01614; Skn-1; Species: Caenorhabditis elegans. XX P0 A C G T 01 3 6 1 9 Y 02 10 4 1 4 A 03 9 1 1 8 W 04 3 1 1 14 T 05 0 0 19 0 G 06 0 0 0 19 T 07 0 19 0 0 C 08 19 0 0 0 A 09 0 0 0 19 T 10 1 9 5 4 N 11 7 8 1 3 M 12 7 5 0 7 H XX BA 19 selected binding sites revealing a GTCAT core XX CC Sequences were selected out of a pool of random 35-mers by binding to bacterially expressed GST-Skn-1 fusion protein; 19 out of 38 sequences had the GTCAT core XX RN [1]; RE0003599. RX PUBMED: 7939715. RA Blackwell T. K., Bowerman B., Priess J. R., Weintraub H. RT Formation of a monomeric DNA binding domain by Skn-1 bZIP and homeodomain elements RL Science 266:621-628 (1994). XX // AC M00230 XX ID N$SKN1_02 XX DT 26.01.1996 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Skn-1 XX DE maternal gene product XX BF T01614; Skn-1; Species: Caenorhabditis elegans. XX P0 A C G T 01 3 6 2 2 N 02 7 0 1 6 W 03 5 1 2 6 W 04 4 2 0 7 W 05 17 0 0 0 A 06 0 0 0 17 T 07 0 17 0 0 C 08 17 0 0 0 A 09 0 0 0 17 T 10 0 6 4 4 B 11 6 4 1 3 N 12 5 2 2 5 N XX BA 17 selected binding sites revealing a ATCAT core XX CC Sequences were selected out of a pool of random 35-mers by binding to bacterially expressed GST-Skn-1 fusion protein; 17 out of 38 sequences had the ATCAT core XX RN [1]; RE0003599. RX PUBMED: 7939715. RA Blackwell T. K., Bowerman B., Priess J. R., Weintraub H. RT Formation of a monomeric DNA binding domain by Skn-1 bZIP and homeodomain elements RL Science 266:621-628 (1994). XX // AC M00231 XX ID V$MEF2_02 XX DT 26.01.1996 (created); ewi. DT 26.01.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA MEF-2 XX DE myogenic MADS factor MEF-2 XX BF T00505; aMEF-2; Species: mouse, Mus musculus. BF T01005; MEF-2A; Species: human, Homo sapiens. XX P0 A C G T 01 5 28 25 42 N 02 16 32 31 21 N 03 18 36 27 19 N 04 19 25 33 23 N 05 22 12 43 23 N 06 33 9 21 37 N 07 20 4 43 33 K 08 3 85 3 9 C 09 3 8 0 89 T 10 85 0 0 15 A 11 57 0 0 41 W 12 91 0 1 8 A 13 96 0 0 4 A 14 93 0 1 6 A 15 0 0 0 100 T 16 100 0 0 0 A 17 9 0 90 1 G 18 34 46 11 9 M 19 36 28 8 28 N 20 20 37 15 28 N 21 30 34 13 23 N 22 23 23 22 32 N XX BA 104 selected sequences binding MEF-2 activity of skeletal muscle XX CC sequences binding to protein that reacts with anti-MEF-2A antibodies were isolated by 9 cycles of selection and amplification from a pool of random 40-mers, nucleotide distribution given in percentages XX RN [1]; RE0003602. RX PUBMED: 7559475. RA Andres V., Cervera M., Mahdavi V. RT Determination of the consensus binding site for MEF2 expressed in muscle and brain reveals tissue-specific sequence constraints RL J. Biol. Chem. 270:23246-23249 (1995). XX // AC M00232 XX ID V$MEF2_03 XX DT 26.01.1996 (created); ewi. DT 26.01.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA MEF-2 XX DE myogenic MADS factor MEF-2 XX BF T00505; aMEF-2; Species: mouse, Mus musculus. BF T01005; MEF-2A; Species: human, Homo sapiens. XX P0 A C G T 01 22 22 24 32 N 02 26 27 29 18 N 03 26 14 26 32 N 04 18 21 37 24 N 05 22 3 49 26 N 06 31 10 9 50 W 07 15 4 39 42 K 08 0 98 0 2 C 09 0 0 0 100 T 10 80 0 1 19 A 11 53 0 0 47 W 12 92 0 0 8 A 13 91 1 2 5 A 14 99 0 0 1 A 15 0 0 0 100 T 16 98 0 0 2 A 17 5 0 92 3 G 18 46 39 4 11 M 19 42 27 6 25 N 20 26 34 6 34 N 21 30 28 18 24 N 22 30 28 23 19 N XX BA 90 selected sequences binding MEF-2 activity of heart muscle cells XX CC sequences binding to mouse heart muscle protein that reacts with anti-MEF-2A antibodies were isolated by 9 cycles of selection and amplification from a pool of random 40-mers, nucleotide distribution given in percentages XX RN [1]; RE0003602. RX PUBMED: 7559475. RA Andres V., Cervera M., Mahdavi V. RT Determination of the consensus binding site for MEF2 expressed in muscle and brain reveals tissue-specific sequence constraints RL J. Biol. Chem. 270:23246-23249 (1995). XX // AC M00233 XX ID V$MEF2_04 XX DT 26.01.1996 (created); ewi. DT 26.01.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA MEF-2 XX DE myogenic MADS factor MEF-2 XX BF T00505; aMEF-2; Species: mouse, Mus musculus. BF T01005; MEF-2A; Species: human, Homo sapiens. XX P0 A C G T 01 41 27 15 17 N 02 13 43 32 12 N 03 7 9 7 77 T 04 7 0 84 9 G 05 9 0 7 84 T 06 0 1 4 86 T 07 63 1 20 16 A 08 0 98 2 0 C 09 0 2 0 98 T 10 91 2 0 7 A 11 68 0 0 32 A 12 100 0 0 0 A 13 100 0 0 0 A 14 100 0 0 0 A 15 0 2 0 98 T 16 100 0 0 0 A 17 2 0 98 0 G 18 80 9 6 5 A 19 72 6 0 22 A 20 43 36 2 18 M 21 27 48 9 16 N 22 21 23 17 39 N XX BA 47 selected sequences binding MEF-2 activity of brain cells XX CC sequences binding to mouse brain protein that reacts with anti-MEF-2A antibodies were isolated by 9 cycles of selection and amplification from a pool of random 40-mers, nucleotide distribution given in percentages XX RN [1]; RE0003602. RX PUBMED: 7559475. RA Andres V., Cervera M., Mahdavi V. RT Determination of the consensus binding site for MEF2 expressed in muscle and brain reveals tissue-specific sequence constraints RL J. Biol. Chem. 270:23246-23249 (1995). XX // AC M00234 XX ID I$SUH_01 XX DT 26.01.1996 (created); ewi. DT 15.02.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Su(H) XX DE Suppressor of Hairless XX BF T01615; Su; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 6 1 2 1 A 02 1 3 3 3 N 03 0 4 0 6 Y 04 0 0 10 0 G 05 0 0 0 10 T 06 0 0 10 0 G 07 3 0 7 0 G 08 0 0 10 0 G 09 10 0 0 0 A 10 10 0 0 0 A 11 5 5 0 0 M 12 1 7 1 1 C 13 1 2 4 3 N XX BA 10 binding sites within E(spl) genes XX BS AGTGTGGGAAACT; R07632; 6; 13;; p. BS ATCGTGAGAAACG; R07633; 6; 13;; p. BS ACTGTGGGAACTG; R07634; 6; 13;; p. BS GGCGTGGGAACCG; R07635; 6; 13;; p. BS TGTGTGAGAAACT; R07636; 6; 13;; p. BS ACTGTGGGAACGG; R07637; 6; 13;; p. BS ATCGTGGGAAACA; R07638; 6; 13;; p. BS GATGTGAGAAACC; R07639; 6; 13;; p. BS ATCGTGGGAACCC; R07640; 6; 13;; p. BS CCTGTGGGAACAT; R07641; 6; 13;; p. XX CC compiled sequences XX RN [1]; RE0003603. RX PUBMED: 7590238. RA Lecourtois M., Schweisguth F. RT The neurogenic suppressor of Hairless DNA-binding protein mediates the transcriptional activation of the enhancer of split complex genes triggered by notch signaling RL Genes Dev. 9:2598-2608 (1995). RN [2]; RE0003805. RX PUBMED: 7590239. RA Bailey A. M., Posakony J. W. RT Suppressor of hairless directly activates transcription of enhancer of split complex genes in response to notch receptor activity RL Genes Dev. 9:2609-2622 (1995). XX // AC M00235 XX ID V$AHRARNT_01 XX DT 05.02.1996 (created); ewi. DT 27.02.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AhR:Arnt XX DE aryl hydrocarbon receptor:Arnt heterodimers XX BF T00018; AhR; Species: mouse, Mus musculus. BF T00194; AhR; Species: mouse, Mus musculus. BF T00019; AhR; Species: rat, Rattus norvegicus. BF T00195; AhR; Species: rat, Rattus norvegicus. BF T01795; AhR; Species: human, Homo sapiens. BF T02270; AhR; Species: guinea pig, Cavia porcellus. BF T01346; Arnt; Species: human, Homo sapiens. BF T01797; Arnt; Species: mouse, Mus musculus. BF T01798; Arnt; Species: rat, Rattus norvegicus. XX P0 A C G T 01 17 0 33 50 K 02 33 6 28 33 N 03 32 16 26 26 N 04 14 9 48 29 K 05 27 14 40 18 N 06 23 9 36 32 N 07 9 5 23 64 T 08 9 35 9 48 Y 09 0 0 96 4 G 10 0 96 0 4 C 11 0 0 100 0 G 12 0 0 0 100 T 13 0 0 100 0 G 14 22 61 0 17 C 15 33 50 0 17 M 16 20 40 40 0 S XX BA 24 selected binding sequences XX BS GGATCGCGTGTCC; R12137; 1; 16; 1, 2, 3; p. BS TTACTTAGCGTGC; R12138; 1; 16; 1, 15, 16; p. BS GATCCGGGCGTGA; R12139; 1; 16; 1, 15, 16; p. BS GCTTATTGCGTGC; R12140; 1; 16; 1, 15, 16; p. BS TAGGGGTCGCGTG; R12141; 1; 16; 14, 15, 16; p. BS TGGCTGCGTGACC; R12142; 1; 16; 1, 2, 3; p. BS GGAGTGTCGCGTG; R12143; 1; 16; 14, 15, 16; p. BS AGGAATCGCGTGC; R12144; 1; 16; 1, 15, 16; p. BS ATGGGATGCGTGC; R12145; 1; 16; 1, 15, 16; p. BS TTTGATTTGCGTG; R12146; 1; 16; 14, 15, 16; p. BS ATAGCGTGCGTGC; R12147; 1; 16; 1, 15, 16; p. BS TGGGTTAGCGTGC; R12148; 1; 16; 1, 15, 16; p. BS ATCTCATCGCGTG; R12149; 1; 16; 14, 15, 16; p. BS TAGGTGTGCGTGC; R12150; 1; 16; 1, 15, 16; p. BS TAAGGTTGCGTGC; R12151; 1; 16; 1, 15, 16; p. BS AGGAGTTGCGTGC; R12152; 1; 16; 1, 15, 16; p. BS ACTGTTCGCGTGC; R12153; 1; 16; 1, 15, 16; p. BS TGCGTGCCA; R12154; 1; 16; 1, 2, 3, 4, 5, 6, 7; p. BS ACTATCGCGTGTT; R12155; 1; 16; 1, 2, 16; p. BS CACAGTCGCGTGT; R12156; 1; 16; 1, 15, 16; p. BS GGTTAGGTGCGTG; R12157; 1; 16; 14, 15, 16; p. BS ATGTGCGTGAAG; R12158; 1; 16; 1, 2, 3, 4; p. BS TGGGTTAGTCGTG; R12159; 1; 16; 14, 15, 16; p. BS GTGTGAAG; R12160; 1; 16; 1, 2, 3, 4, 5, 6, 7, 8; p. XX CC from a pool of random 13-mers, oligonucleotides that bind to in vitro-translated AhR/Arnt were selected by 3 rounds of selection and PCR amplification XX RN [1]; RE0003789. RX PUBMED: 7592839. RA Swanson H. I., Chan W. K., Bradfield C. A. RT DNA binding specificities and pairing rules of the Ah receptor, ARNT, and SIM proteins RL J. Biol. Chem. 270:26292-26302 (1995). XX // AC M00236 XX ID V$ARNT_01 XX DT 05.02.1996 (created); ewi. DT 01.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Arnt XX DE AhR nuclear translocator homodimers XX BF T01346; Arnt; Species: human, Homo sapiens. BF T01797; Arnt; Species: mouse, Mus musculus. BF T01798; Arnt; Species: rat, Rattus norvegicus. XX P0 A C G T 01 25 13 50 13 N 02 30 0 30 40 D 03 33 0 25 42 D 04 33 8 42 17 N 05 17 17 25 42 N 06 20 80 0 0 C 07 95 0 5 0 A 08 0 100 0 0 C 09 0 0 100 0 G 10 0 0 0 100 T 11 0 0 100 0 G 12 24 35 24 18 N 13 14 36 14 36 N 14 17 42 25 17 N 15 10 20 40 30 N 16 13 38 25 25 N XX BA 20 selected binding sequences XX CC from a pool of random 13-mers, oligonucleotides that bind to baculovirus-expressed Arnt were selected by 4 rounds of selection and PCR amplification; positions 6 - 8 contain primer sequences in parts (that are not shown in the site entries) XX RN [1]; RE0003789. RX PUBMED: 7592839. RA Swanson H. I., Chan W. K., Bradfield C. A. RT DNA binding specificities and pairing rules of the Ah receptor, ARNT, and SIM proteins RL J. Biol. Chem. 270:26292-26302 (1995). XX // AC M00237 XX ID V$AHRARNT_02 XX DT 05.02.1996 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AhR:Arnt XX DE aryl hydrocarbon receptor:Arnt heterodimers, fixed core XX BF T00018; AhR; Species: mouse, Mus musculus. BF T00194; AhR; Species: mouse, Mus musculus. BF T00019; AhR; Species: rat, Rattus norvegicus. BF T00195; AhR; Species: rat, Rattus norvegicus. BF T01795; AhR; Species: human, Homo sapiens. BF T02270; AhR; Species: guinea pig, Cavia porcellus. BF T01346; Arnt; Species: human, Homo sapiens. BF T01797; Arnt; Species: mouse, Mus musculus. BF T01798; Arnt; Species: rat, Rattus norvegicus. XX P0 A C G T 01 16 4 76 4 G 02 32 8 48 12 R 03 8 24 56 12 G 04 12 12 44 32 K 05 72 0 24 4 A 06 0 0 16 84 T 07 0 52 0 48 Y 08 0 0 100 0 G 09 0 100 0 0 C 10 0 0 100 0 G 11 0 0 0 100 T 12 0 0 100 0 G 13 48 36 0 16 M 14 8 56 28 8 C 15 48 0 8 44 W 16 40 4 32 24 N 17 0 40 40 20 S 18 0 72 16 12 C 19 0 100 0 0 C XX BA 25 selected binding sequences XX BS ACGGATTGCGTGACTAGGC; R12170; 1; 19;; p. BS GTCGGGTGCGTGACATGCC; R12171; 1; 19;; p. BS GGATATCGCGTGCGGTGCC; R12172; 1; 19;; p. BS GGCAGGTGCGTGACAATGC; R12173; 1; 19;; p. BS ATGGGTTGCGTGACTTGCC; R12174; 1; 19;; p. BS GGGGATCGCGTGACTGTTC; R12175; 1; 19;; p. BS CTGGATCGCGTGTGTTGCC; R12176; 1; 19;; p. BS GGGTATCGCGTGACTTGCC; R12177; 1; 19;; p. BS GGAGATCGCGTGTAAGTTC; R12178; 1; 19;; p. BS GCCCATCGCGTGCCGTCTC; R12179; 1; 19;; p. BS GAGGTTCGCGTGCGAGTGC; R12180; 1; 19;; p. BS GGGTATCGCGTGACTGCCC; R12181; 1; 19;; p. BS GGGTATCGCGTGATTACCC; R12182; 1; 19;; p. BS AATGGGTGCGTGTCAAGCC; R12183; 1; 19;; p. BS GGGTATTGCGTGCCAACCC; R12184; 1; 19;; p. BS TAGAGGTGCGTGCGAACCC; R12185; 1; 19;; p. BS GGGTATTGCGTGCCAACCC; R12186; 1; 19;; p. BS GGGTATCGCGTGATTACCC; R12187; 1; 19;; p. BS GGGTATCGCGTGACTAGCC; R12188; 1; 19;; p. BS GACAATTGCGTGCGAGGGC; R12189; 1; 19;; p. BS GACGATTGCGTGCGAGTCC; R12190; 1; 19;; p. BS GATGATTGCGTGTATGCCC; R12191; 1; 19;; p. BS AATCGTTGCGTGAGAGGCC; R12192; 1; 19;; p. BS GACGATCGCGTGCCTACCC; R12193; 1; 19;; p. BS GGGCATCGCGTGACACCCC; R12194; 1; 19;; p. XX CC from a pool of oligonucleotides with a fixed GCGTG core and flanking random heptamers, sequences that bind to in vitro-translated AhR/Arnt were selected by 3 rounds of selection and PCR amplification XX RN [1]; RE0003789. RX PUBMED: 7592839. RA Swanson H. I., Chan W. K., Bradfield C. A. RT DNA binding specificities and pairing rules of the Ah receptor, ARNT, and SIM proteins RL J. Biol. Chem. 270:26292-26302 (1995). XX // AC M00238 XX ID V$BARBIE_01 XX DT 09.02.1996 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Barbie Box XX DE barbiturate-inducible element XX P0 A C G T 01 10 2 1 2 A 02 2 1 3 9 T 03 4 7 1 3 N 04 6 2 2 5 N 05 15 0 0 0 A 06 15 0 0 0 A 07 15 0 0 0 A 08 0 0 15 0 G 09 1 9 4 1 C 10 4 3 1 7 N 11 1 1 10 3 G 12 4 1 8 2 G 13 5 2 4 4 N 14 2 0 9 4 G 15 2 1 11 1 G XX BA 15 elements of 10 pro- and eukaryotic genes XX BS ATCAAAAGCTGGTGG; R07642; 1; 15;; p. BS ATAAAAAGCTGGTGC; R07643; 1; 15;; p. BS AGCTAAAGCAGGAGG; R07644; 1; 15;; p. BS AGCCAAAGCAGGAGG; R07645; 1; 15;; p. BS TTCAAAAGAGGGCTT; R07646; 1; 15;; p. BS GTCTAAAGTCCAGGG; R07647; 1; 15;; p. BS AGGGAAAGGTGGTGG; R07648; 1; 15;; p. BS ATTTAAAGGCAAAGG; R07649; 1; 15;; p. BS AAAAAAAGCTGAATG; R07650; 1; 15;; p. BS ATCAAAAGCTTGGGA; R07651; 1; 15;; p. BS ATAAAAAGGAGCAAG; R07652; 1; 15;; p. BS ATAGAAAGCATTCTG; R07653; 1; 15;; p. BS CATTAAAGCCTGTGG; R07654; 1; 15;; p. BS TCCCAAAGCTGTGTG; R07655; 1; 15;; p. BS CTTTAAAGGTGAGAA; R07656; 1; 15;; p. XX CC compiled sequences XX RN [1]; RE0003794. RX PUBMED: 7876210. RA Liang Q., He J.-S., Fulco A. J. RT The role of Barbie box sequences as cis-acting elements involved in the barbiturate-mediated induction of cytochrome P450BM-1 and P450BM-3 in Bacillus megaterium RL J. Biol. Chem. 270:4438-4450 (1995). XX // AC M00239 XX ID V$T3R_01 XX DT 14.02.1996 (created); ewi. DT 14.02.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA v-ErbA XX DE viral homolog of thyroid hormone receptor alpha1 XX BF T00886; v-ErbA; Species: AEV, avian erythroblastosis virus. XX P0 A C G T 01 3 7 7 0 S 02 8 3 2 4 N 03 3 4 5 5 N 04 0 0 1 16 T 05 7 1 9 0 R 06 16 0 1 0 A 07 0 0 17 0 G 08 0 0 17 0 G 09 0 0 0 17 T 10 0 17 0 0 C 11 17 0 0 0 A 12 2 12 0 3 C 13 2 3 10 2 G 14 2 8 7 0 S 15 3 6 3 5 N 16 6 5 3 3 N XX BA 17 selected binding sequences XX CC oligonucleotides binding to bacterially expressed v-ErbA monomer were selected from a pool of random 18-mers XX RN [1]; RE0003804. RX PUBMED: 7713893. RA Subauste J. S., Koenig R. J. RT Comparison of the DNA binding specificity and function of v-ErbA and thyroid hormone receptor alpha1 RL J. Biol. Chem. 270:7957-7962 (1995). XX // AC M00240 XX ID V$NKX25_01 XX DT 19.02.1996 (created); ewi. DT 25.04.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Nkx2-5 XX DE homeo domain factor Nkx-2.5/Csx, tinman homolog XX BF T01675; Nkx2-5; Species: mouse, Mus musculus. XX P0 A C G T 01 1 0 1 5 T 02 0 4 0 3 Y 03 7 0 0 0 A 04 7 0 0 0 A 05 0 0 7 0 G 06 0 0 0 7 T 07 1 0 6 0 G XX BA 6 selected binding sequences and one Nkx-2.1 consensus binding site belonging to the AAGT consensus XX BS TCAAGTG; R07657; 11; 7;; p. BS TCAAGTG; R07658; 9; 7;; p. BS TTAAGTG; R07659; 9; 7;; p. BS ATAAGTG; R07660; 4; 7;; p. BS TCAAGTG; R07661; 4; 7;; p. BS GTAAGTG; R07662; 9; 7;; p. BS TCAAGTA; R07663; 7; 7;; p. XX CC from a pool of random 15-mers, oligonucleotides were selected and amplified for 4 rounds that were bound by bacterially synthesized Nkx-2.5 XX RN [1]; RE0003808. RX PUBMED: 7797561. RA Chen C. Y., Schwartz R. J. RT Identification of novel DNA binding targets and regulatory domains of a murine tinman homeodomain factor, nkx-2.5 RL J. Biol. Chem. 270:15628-15633 (1995). XX // AC M00241 XX ID V$NKX25_02 XX DT 19.02.1996 (created); ewi. DT 25.04.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Nkx2-5 XX DE homeo domain factor Nkx-2.5/Csx, tinman homolog XX BF T01675; Nkx2-5; Species: mouse, Mus musculus. XX P0 A C G T 01 0 4 1 0 C 02 2 0 0 3 W 03 0 0 0 5 T 04 5 0 0 0 A 05 5 0 0 0 A 06 0 0 0 5 T 07 1 0 0 4 T 08 1 1 3 0 G XX BA 5 selected binding sequences belonging to the TAAT consensus XX BS GTTAATTG; R07664; 8; 8;; p. BS CATAATTA; R07665; 8; 8;; p. BS CTTAATTG; R07666; 1; 8;; p. BS CATAATTG; R07667; 6; 8;; p. BS CTTAATAC; R07668; 8; 8;; p. XX CC from a pool of random 15-mers, oligonucleotides were selected and amplified for 4 rounds that were bound by bacterially synthesized Nkx-2.5 XX RN [1]; RE0003808. RX PUBMED: 7797561. RA Chen C. Y., Schwartz R. J. RT Identification of novel DNA binding targets and regulatory domains of a murine tinman homeodomain factor, nkx-2.5 RL J. Biol. Chem. 270:15628-15633 (1995). XX // AC M00242 XX ID V$PPARA_01 XX DT 19.02.1996 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA PPARalpha:RXR-alpha XX DE PPAR:RXR heterodimers XX BF T00694; PPAR-alpha; Species: mouse, Mus musculus. BF T00991; PPAR-alpha; Species: rat, Rattus norvegicus. BF T01352; PPAR-alpha; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 1 5 1 0 C 02 4 1 0 2 A 03 4 0 3 0 R 04 5 1 1 0 A 05 4 0 1 2 A 06 1 5 1 0 C 07 0 2 0 5 T 08 6 0 1 0 A 09 0 0 7 0 G 10 0 0 7 0 G 11 1 2 1 3 N 12 1 6 0 0 C 13 7 0 0 0 A 14 5 0 0 2 A 15 7 0 0 0 A 16 0 0 7 0 G 17 0 0 5 2 G 18 0 0 0 7 T 19 0 6 1 0 C 20 6 0 0 1 A XX BA 7 high-affinity binding sites of DR1 type XX BS CAAAACTAGGTCAAAGGTCA; R07669; 1; 20;; p. BS GCGCGCCAGGTCAAAGGTCA; R07670; 1; 20;; p. BS CAAATATAGGCCATAGGTCA; R07671; 1; 20;; p. BS CTGGACCAGGACAAAGGTCA; R07672; 1; 20;; p. BS CTGAACTAGGGCAAAGTTGA; R07673; 1; 20;; p. BS CAAATGTAGGTAATAGTTCA; R07674; 1; 20;; p. BS AAAAACTGGGCCAAAGGTCT; R07675; 1; 20;; p. XX CC compiled sequences XX RN [1]; RE0003809. RX PUBMED: 7608174. RA Palmer C. N. A., Hsu M.-H., Griffin K. J., Johnson E. F. RT Novel sequence determinants in peroxisome proliferator signaling RL J. Biol. Chem. 270:16114-16121 (1995). XX // AC M00243 XX ID V$EGR1_01 XX DT 20.02.1996 (created); ewi. DT 20.02.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Egr-1 XX DE Egr-1/Krox-24/NGFI-A immediate-early gene product XX BF T00241; Egr-1; Species: human, Homo sapiens. BF T00244; Egr-1; Species: mouse, Mus musculus. BF T04214; Egr-1; Species: mouse, Mus musculus. BF T00455; Egr-1; Species: mouse, Mus musculus. BF T01200; Egr-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 45.5 6.1 6.1 42.4 W 02 5.1 2.6 5.1 87.2 T 03 7.3 0.0 92.7 0.0 G 04 0.0 98.2 0.0 1.8 C 05 1.8 0.0 98.2 0.0 G 06 0.0 1.8 14.5 83.6 T 07 30.9 0.0 69.1 0.0 G 08 0.0 0.0 100.0 0.0 G 09 0.0 0.0 100.0 0.0 G 10 12.7 76.4 0.0 10.9 C 11 0.0 0.0 100.0 0.0 G 12 0.0 0.0 42.3 57.7 K XX BA selected binding sequences XX CC oligonucleotides binding to bacterially expressed Egr-1 were selected from a pool of random 21-mers by 2 rounds of selection and PCR amplification XX RN [1]; RE0003829. RX PUBMED: 7891721. RA Swirnoff A. H., Milbrandt J. RT DNA-binding specificity of NGFI-A and related zinc finger transcription factors RL Mol. Cell. Biol. 15:2275-2287 (1995). XX // AC M00244 XX ID V$NGFIC_01 XX DT 20.02.1996 (created); ewi. DT 20.02.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA NGFI-C XX DE nerve growth factor-induced protein C XX BF T00620; Egr-4; Species: rat, Rattus norvegicus. XX P0 A C G T 01 52.6 0.0 10.5 36.8 W 02 9.5 9.5 7.1 73.8 T 03 1.9 0.0 98.1 0.0 G 04 5.7 94.3 0.0 0.0 C 05 0.0 0.0 100.0 0.0 G 06 0.0 0.0 9.3 90.7 T 07 24.1 0.0 75.9 0.0 G 08 0.0 0.0 100.0 0.0 G 09 0.0 0.0 100.0 0.0 G 10 9.4 56.6 0.0 34.0 Y 11 0.0 0.0 100.0 0.0 G 12 2.0 0.0 70.0 28.0 G XX BA selected binding sequences XX CC oligonucleotides binding to bacterially expressed NGFI-C were selected from a pool of random 21-mers by 2 rounds of selection and PCR amplification XX RN [1]; RE0003829. RX PUBMED: 7891721. RA Swirnoff A. H., Milbrandt J. RT DNA-binding specificity of NGFI-A and related zinc finger transcription factors RL Mol. Cell. Biol. 15:2275-2287 (1995). XX // AC M00245 XX ID V$EGR3_01 XX DT 20.02.1996 (created); ewi. DT 20.02.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Egr-3 XX DE early growth response gene 3 product XX BF T00243; Egr-3; Species: human, Homo sapiens. XX P0 A C G T 01 30.3 27.3 27.3 15.1 N 02 17.1 7.3 9.8 65.9 T 03 1.9 0.0 98.1 0.0 G 04 0.0 100.0 0.0 0.0 C 05 0.0 0.0 100.0 0.0 G 06 0.0 0.0 0.0 100.0 T 07 32.1 0.0 67.9 0.0 G 08 0.0 0.0 100.0 0.0 G 09 0.0 0.0 100.0 0.0 G 10 5.7 88.7 0.0 5.7 C 11 0.0 0.0 100.0 0.0 G 12 2.0 0.0 34.0 64.0 K XX BA selected binding sequences XX CC oligonucleotides binding to bacterially expressed Egr-3 were selected from a pool of random 21-mers by 2 rounds of selection and PCR amplification XX RN [1]; RE0003829. RX PUBMED: 7891721. RA Swirnoff A. H., Milbrandt J. RT DNA-binding specificity of NGFI-A and related zinc finger transcription factors RL Mol. Cell. Biol. 15:2275-2287 (1995). XX // AC M00246 XX ID V$EGR2_01 XX DT 20.02.1996 (created); ewi. DT 23.04.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Egr-2 XX DE Egr-2/Krox-20 early growth response gene product XX BF T00242; Egr-2; Species: human, Homo sapiens. BF T00454; Egr-2; Species: mouse, Mus musculus. XX P0 A C G T 01 31.8 9.1 25.0 34.1 N 02 5.6 3.7 9.3 81.5 T 03 3.8 0.0 96.3 0.0 G 04 6.3 90.0 0.0 3.8 C 05 0.0 0.0 100.0 0.0 G 06 0.0 0.0 0.0 100.0 T 07 37.5 0.0 62.5 0.0 R 08 0.0 0.0 100.0 0.0 G 09 0.0 0.0 100.0 0.0 G 10 5.0 82.5 0.0 12.5 C 11 1.3 0.0 97.5 1.3 G 12 2.6 2.6 44.9 50.0 K XX BA selected binding sequences XX CC oligonucleotides binding to bacterially expressed Egr-2 were selected from a pool of random 21-mers by 2 rounds of selection and PCR amplification XX RN [1]; RE0003829. RX PUBMED: 7891721. RA Swirnoff A. H., Milbrandt J. RT DNA-binding specificity of NGFI-A and related zinc finger transcription factors RL Mol. Cell. Biol. 15:2275-2287 (1995). XX // AC M00247 XX ID F$PACC_01 XX DT 20.02.1996 (created); ewi. DT 20.02.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA PacC XX DE pH-responsive regulator from Aspergillus XX BF T01679; PacC; Species: Aspergillus nidulans, Emericella nidulans. XX P0 A C G T 01 2 2 1 0 M 02 2 2 0 1 M 03 0 4 1 0 C 04 1 1 2 1 N 05 0 0 5 0 G 06 0 5 0 0 C 07 0 5 0 0 C 08 5 0 0 0 A 09 3 0 2 0 R 10 0 0 5 0 G 11 2 3 0 0 M 12 1 1 3 0 G 13 1 1 2 1 N 14 2 2 0 1 M 15 1 2 2 0 S 16 1 2 0 2 Y 17 1 1 1 2 N XX BA 5 binding sites from the ipnA gene XX BS ATCGGCCAGGCGGAGCT; R07676; 1; 17;; p. BS CACTGCCAAGAGGCCTT; R07677; 1; 17;; p. BS GACGGCCAAGCGACACC; R07678; 1; 17;; p. BS ACGAGCCAAGCCCTCTA; R07679; 1; 17;; p. BS CCCCGCCAGGAATAGAG; R07680; 1; 17;; p. XX CC compiled sequences XX RN [1]; RE0003830. RX PUBMED: 7882981. RA Tilburn J., Sarkar S., Widdick D. A., Espeso E. A., Orejas M., Mungroo J., Penalva M. A., Arst jr H. N. RT The Aspergillus PacC zinc finger transcription factor mediates regulation of both acid- and alkaline-expressed genes by ambient pH RL EMBO J. 14:779-790 (1995). XX // AC M00248 XX ID V$OCT1_07 XX DT 25.09.1996 (created); ewi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE octamer factor 1 XX BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. BF T01862; POU2F1b; Species: mouse, Mus musculus. BF T01863; POU2F1c; Species: mouse, Mus musculus. XX P0 A C G T 01 22 6 11 56 T 02 22 28 28 22 N 03 6 6 0 89 T 04 100 0 0 0 A 05 0 0 0 100 T 06 0 0 95 5 G 07 0 39 32 28 B 08 24 0 0 76 T 09 100 0 0 0 A 10 100 0 0 0 A 11 0 0 0 100 T 12 0 0 0 100 T XX BA 18 selected oligonucleotides XX CC oligonucleotides selected from random 8-mers with a fixed 3'-flanking AATTT by 8 cycles of selection and PCR amplification, binding to bacterially expressed Oct-1 POU domain XX RN [1]; RE0004475. RX PUBMED: 7667096. RA van Leeuwen H. C., Strating M. J., Cox M., Kaptein R., van der Vliet P. C. RT Mutation of the Oct-1 POU-specific recognition helix leads to altered DNA binding and influences enhancement of adenovirus DNA replication RL Nucleic Acids Res. 23:3189-3197 (1995). XX // AC M00249 XX ID V$CHOP_01 XX DT 25.09.1996 (created); ewi. DT 25.09.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CHOP:C/EBPalpha XX DE heterodimers of CHOP and C/EBPalpha XX BF T01388; C/EBP; Species: clawed frog, Xenopus laevis. BF T00104; C/EBPalpha; Species: mouse, Mus musculus. BF T00108; C/EBPalpha; Species: rat, Rattus norvegicus. BF T00105; C/EBPalpha; Species: human, Homo sapiens. BF T00107; C/EBPalpha; Species: chick, Gallus gallus. BF T00127; CHOP-10; Species: mouse, Mus musculus. BF T00299; CHOP-10; Species: chinese hamster, Cricetulus longicaudatus. BF T01387; CHOP-10; Species: human, Homo sapiens. XX P0 A C G T 01 14 7 12 6 N 02 11 7 14 7 N 03 18 3 15 3 R 04 0 1 0 38 T 05 0 0 38 1 G 06 4 33 0 2 C 07 38 1 0 0 A 08 36 2 1 0 A 09 0 6 0 33 T 10 14 17 5 3 M 11 4 23 9 3 C 12 0 26 6 7 C 13 1 27 4 7 C XX BA 39 selected oligonucleotides XX BS GTGTGCAATCCTC; R07681; 7; 13;; p. BS GAGTGCAATCGGT; R07682; 7; 13;; p. BS ATATGCAGTGGGG; R07683; 7; 13;; p. BS AAATGCAATCGCC; R07684; 7; 13;; p. BS CAATGCAATACCC; R07685; 7; 13;; p. BS GGGTGCAATTATG; R07686; 7; 13;; p. BS TTGTGCAACACCC; R07687; 7; 13;; p. BS CAGTGCAATACCC; R07688; 7; 13;; p. BS GGTTGCAATACCT; R07689; 7; 13;; p. BS TAGTGCAATCGTG; R07690; 7; 13;; p. BS ACATGCAATCCCC; R07691; 7; 13;; p. BS GCGTGCAATCGTG; R07692; 7; 13;; p. BS AGGTGCAATAGCC; R07693; 7; 13;; p. BS TAATGCAATGTGC; R07694; 7; 13;; p. BS TAATGCAATGTGC; R07695; 7; 13;; p. BS ACATGCAATCGCC; R07696; 7; 13;; p. BS CCATGAAATACCC; R07697; 6; 13;; p. BS AATTGCAATCCCC; R07698; 7; 13;; p. BS TGATGTAACACCC; R07699; 7; 13;; p. BS CAATGCAATACCC; R07700; 7; 13;; p. BS CTGTGCAATCCCC; R07701; 7; 13;; p. BS AGACGCAATACCC; R07702; 7; 13;; p. BS AGCTGCAATACCC; R07703; 7; 13;; p. BS AGGTGCAATACCC; R07704; 7; 13;; p. BS GGGTGCAATCGCC; R07705; 7; 13;; p. BS GACTGCAACTTCT; R07706; 7; 13;; p. BS TCATGCAACCCCC; R07707; 7; 13;; p. BS GTATGCAACTACT; R07708; 7; 13;; p. BS CGATGAAATCACC; R07709; 6; 13;; p. BS AGTTGCACTGATC; R07710; 7; 13;; p. BS GAATGCAATCCCC; R07711; 7; 13;; p. BS AGATTTCCTGCGT; R07712; 7; 13;; p. BS CCGTGCAATACCT; R07713; 7; 13;; p. BS ATGTGCAATCCGC; R07714; 7; 13;; p. BS GGCTGCAACCCCC; R07715; 7; 13;; p. BS AGGTGCAATCGTT; R07716; 7; 13;; p. BS ACATGAAATACCC; R07717; 7; 13;; p. BS GTGTGCAATCCTA; R07718; 7; 13;; p. BS GGATGAAATACCC; R07719; 7; 13;; p. XX CC sequences binding to bacterially expressed CHOP-GST fusion protein and C/EBP alpha were selected from random 13-mers by 5 cycles of selection and PCR amplification XX RN [1]; RE0004472. RX PUBMED: 8657121. RA Ubeda M., Wang X.-Z., Zinszner H., Wu I., Habener J. F., Ron D. RT Stress-induced binding of the transcription factor CHOP to a novel DNA control element RL Mol. Cell. Biol. 16:1479-1489 (1996). XX // AC M00250 XX ID V$GFI1_01 XX DT 25.09.1996 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Gfi-1 XX DE growth factor independence 1 XX BF T01921; Gfi1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 6 3 3 3 N 02 6 6 4 3 N 03 10 7 4 4 N 04 11 6 8 3 N 05 11 6 9 5 N 06 10 9 7 7 N 07 6 14 4 16 N 08 32 6 4 2 A 09 54 0 0 0 A 10 54 0 0 0 A 11 0 0 0 54 T 12 0 54 0 0 C 13 35 2 1 13 A 14 6 26 13 4 C 15 21 0 9 18 W 16 4 4 36 4 G 17 3 26 3 14 Y 18 17 10 6 11 N 19 8 9 9 14 N 20 11 6 10 9 N 21 4 10 4 11 N 22 4 8 10 4 N 23 7 8 3 5 N 24 4 7 5 5 N XX BA 54 selected oligonucleotides XX CC sequences selected for binding to bacterially expressed GST-Gfi-1 fusion protein from random 18-mers by 4 round of selection/PCR amplification XX RN [1]; RE0004467. RX PUBMED: 8754800. RA Zweidler-McKay P. A., Grimes H. L., Flubacher M. M., Tsichlis P. N. RT Gfi-1 encodes a nuclear zinc finger protein that binds DNA and functions as a transcriptional repressor RL Mol. Cell. Biol. 16:4024-4034 (1996). XX // AC M00251 XX ID V$XBP1_01 XX DT 25.09.1996 (created); ewi. DT 25.09.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA XBP-1 XX DE X-box-binding protein 1 XX BF T00902; XBP-1; Species: human, Homo sapiens. XX P0 A C G T 01 14 1 10 8 N 02 4 5 9 15 N 03 6 2 21 4 G 04 16 7 4 6 N 05 4 3 2 24 T 06 1 4 21 7 G 07 33 0 0 0 A 08 0 33 0 0 C 09 0 0 33 0 G 10 0 0 0 33 T 11 3 2 28 0 G 12 4 2 10 17 K 13 7 14 4 8 N 14 9 14 5 5 N 15 8 9 3 13 N 16 17 0 2 14 W 17 6 2 8 17 T XX BA 33 selected oligonucleotides XX BS ACTATGACGTGTATAAA; R07720; 8; 17;; p. BS GTGCTGACGTGTCCCAG; R07721; 14; 17;; p. BS ATGCGGACGTGAACCGG; R07722; 7; 17;; p. BS GGGATGACGTGTGATTA; R07723; 11; 17;; p. BS TGTCCGACGTGTCCTTA; R07724; 8; 17;; p. BS ATGATTACGTGGTCTTG; R07725; 7; 17;; p. BS ATGCTGACGTACCTTAG; R07726; 11; 17;; p. BS TGGATGACGTGTACAAT; R07727; 8; 17;; p. BS AAAGTGACGTGTCACAT; R07728; 16; 17;; p. BS GCAATGACGTCATCCAT; R07729; 11; 17;; p. BS ATGTACACGTGTAGATG; R07730; 7; 17;; p. BS AAGTACACGTGGTGGAA; R07731; 12; 17;; p. BS TTGTACACGTGGCGTTG; R07732; 13; 17;; p. BS ATGGTTACGTGGCATTT; R07733; 13; 17;; p. BS TGTGATACGTGTCTTTT; R07734; 13; 17;; p. BS TCGCTGACGTGTACATC; R07735; 17; 17;; p. BS ATGATGACGTGTCAGAT; R07736; 7; 17;; p. BS TTGATGACGTATTACAT; R07737; 13; 17;; p. BS GGAATGACGTCATCCAT; R07738; 11; 17;; p. BS GGAACCACGTGTCATTG; R07739; 14; 17;; p. BS ACCCTGACGTGTCCCTT; R07740; 12; 17;; p. BS GTATCTACGTGCTTTAT; R07741; 9; 17;; p. BS GCAATGACGTGGGATAA; R07742; 13; 17;; p. BS ATGATTACGTGGATCAG; R07743; 7; 17;; p. BS GAGATGACGTGTTCTAC; R07744; 13; 17;; p. BS TTCATTACGTGGCGTTT; R07745; 11; 17;; p. BS GAGATGACGTGTGGGTT; R07746; 9; 17;; p. BS AGTGTGACGTGGCCATT; R07747; 13; 17;; p. BS ATGTGTACGTGTCATGT; R07748; 7; 17;; p. BS CTGCTGACGTGTGCAAT; R07749; 9; 17;; p. BS GTGTTGACGTAATCAAT; R07750; 9; 17;; p. BS TGGATGACGTGGACAAA; R07751; 13; 17;; p. BS AGGATAACGTGGCACTT; R07752; 13; 17;; p. XX CC sequences binding to bacterially expressed XBP-1 after 4 round of selection/PCR amplification; only those sequences with the conserved ACGT core more than 3 position away from the fixed template sequences XX RN [1]; RE0004462. RX PUBMED: 8657566. RA Clauss I. M., Chu M., Zhao J.-L., Glimcher L. H. RT The basic domain/leucine zipper protein hXBP-1 preferentially binds to and transactivates CRE-like sequences containing an ACGT core RL Nucleic Acids Res. 24:1855-1864 (1996). XX // AC M00252 XX ID V$TATA_01 XX DT 25.09.1996 (created); ewi. DT 25.09.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA TATA XX DE cellular and viral TATA box elements XX BF T00796; TBP; Species: mouse, Mus musculus. BF T00794; TBP; Species: human, Homo sapiens. BF T00797; TBP; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 61 145 152 31 S 02 16 46 18 309 T 03 352 0 2 35 A 04 3 10 2 374 T 05 354 0 5 30 A 06 268 0 0 121 A 07 360 3 20 6 A 08 222 2 44 121 W 09 155 44 157 33 R 10 56 135 150 48 N 11 83 147 128 31 N 12 82 127 128 52 N 13 82 118 128 61 N 14 68 107 139 75 N 15 77 101 140 71 N XX BA 389 TATA box elements XX CC selected sequences from 502 promoters of EPD, mainly from vertebrates XX RN [1]; RE0004477. RX PUBMED: 2329577. RA Bucher P. RT Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences RL J. Mol. Biol. 212:563-578 (1990). XX // AC M00253 XX ID V$CAP_01 XX DT 25.09.1996 (created); ewi. DT 18.07.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA cap XX DE cap signal for transcription initiation XX P0 A C G T 01 49 48 69 137 N 02 0 303 0 0 C 03 288 0 0 15 A 04 26 81 116 80 N 05 77 95 0 131 H 06 67 118 46 72 N 07 45 85 73 100 N 08 50 96 56 101 N XX BA 303 cap sites XX CC selected sequences from 502 promoters of EPD, mainly from vertebrates XX RN [1]; RE0004477. RX PUBMED: 2329577. RA Bucher P. RT Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences RL J. Mol. Biol. 212:563-578 (1990). XX // AC M00254 XX ID V$CAAT_01 XX DT 25.09.1996 (created); ewi. DT 25.09.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA CCAAT box XX DE cellular and viral CCAAT box XX P0 A C G T 01 56 55 12 52 N 02 32 52 43 48 N 03 25 47 24 79 N 04 102 1 70 2 R 05 51 6 99 19 R 06 0 173 1 1 C 07 0 174 0 1 C 08 175 0 0 0 A 09 119 8 21 27 A 10 17 0 15 143 T 11 23 90 59 3 S 12 116 6 52 1 A XX BA 175 CCAAT boxes of the -212/-57 region XX CC selected sequences from 502 promoters of EPD, mainly from vertebrates XX RN [1]; RE0004477. RX PUBMED: 2329577. RA Bucher P. RT Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences RL J. Mol. Biol. 212:563-578 (1990). XX // AC M00255 XX ID V$GC_01 XX DT 25.09.1996 (created); ewi. DT 25.09.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GC box XX DE GC box elements XX P0 A C G T 01 102 40 50 82 N 02 97 31 112 34 R 03 50 6 154 64 G 04 67 1 206 0 G 05 0 0 274 0 G 06 2 0 272 0 G 07 54 170 0 50 C 08 46 1 224 3 G 09 1 3 222 48 G 10 79 0 171 24 G 11 23 17 192 42 G 12 0 166 35 73 C 13 20 86 52 116 N 14 40 24 109 101 K XX BA 274 GC box elements of the -164/+1 region XX CC selected sequences from 502 promoters of EPD, mainly from vertebrates; GC boxes in vertebrate promoters only XX RN [1]; RE0004477. RX PUBMED: 2329577. RA Bucher P. RT Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences RL J. Mol. Biol. 212:563-578 (1990). XX // AC M00256 XX ID V$NRSF_01 XX DT 25.11.1996 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA NRSF XX DE neuron-restrictive silencer factor XX BF T01974; NRSF form 1; Species: human, Homo sapiens. BF T01973; NRSF form 2; Species: human, Homo sapiens. XX P0 A C G T 01 2 2 3 21 T 02 0 4 3 21 T 03 0 27 0 1 C 04 28 0 0 0 A 05 0 0 28 0 G 06 0 27 0 1 C 07 28 0 0 0 A 08 0 28 0 0 C 09 0 28 0 0 C 10 17 0 7 4 A 11 4 20 2 2 C 12 1 0 27 0 G 13 0 0 28 0 G 14 23 1 0 4 A 15 0 26 2 0 C 16 28 0 0 0 A 17 0 0 28 0 G 18 10 17 0 1 M 19 7 4 16 1 G 20 2 16 8 2 C 21 4 22 0 2 C XX BA 28 proven binding sites of 9 genes from 12 organisms XX CC searched, verified and aligned binding sites XX RN [1]; RE0004782. RX PUBMED: 8790425. RA Schoenherr C. J., Paquette A. J., Anderson D. J. RT Identification of potential target genes for the neuron-restrictive silencer factor RL Proc. Natl. Acad. Sci. USA 93:9881-9886 (1996). XX // AC M00257 XX ID V$RREB1_01 XX DT 28.11.1996 (created); ewi. DT 28.11.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA RREB-1 XX DE Ras-responsive element binding protein 1 XX BF T01975; RREB-1; Species: human, Homo sapiens. XX P0 A C G T 01 3 8 0 0 C 02 0 11 0 0 C 03 1 10 0 0 C 04 0 11 0 0 C 05 11 0 0 0 A 06 9 2 0 0 A 07 8 3 0 0 A 08 2 8 0 1 C 09 4 7 0 0 M 10 7 4 0 0 M 11 3 8 0 0 C 12 2 9 0 0 C 13 3 8 0 0 C 14 2 7 1 1 C XX BA 11 selected binding sequences XX BS CCCCAAACACCCCC; R07781; 3; 14;; p. BS CCCCAAACCACCCA; R07782; 3; 14;; p. BS CCCCAAACCAACCC; R07783; 3; 14;; p. BS CCCCAACACCCCCT; R07784; 8; 14;; p. BS CCACAAATCACCCC; R07785; 6; 14;; p. BS CCCCACACCACCAC; R07786; 4; 14;; p. BS CCCCAAACAACACC; R07787; 8; 14;; p. BS CCCCAAACCACCAG; R07788; 1; 14;; p. BS ACCCAACACAACCA; R07789; 4; 14;; p. BS ACCCACCCACCAAC; R07790; 7; 14;; p. BS ACCCAAACACACCC; R07791; 6; 14;; p. XX CC sequences that bind to bacterially expressed GST-RREB-1 fusion protein were selected in five CASTing cycles from random 23-mers XX RN [1]; RE0004978. RX PUBMED: 8816445. RA Thiagalingam A., de Bustros A., Borges M., Jasti R., Compton D., Diamond L., Mabry M., Ball D. W., Baylin S. B., Nelkin B. D. RT RREB-1, a novel zinc finger protein, is involved in the differentiation response to Ras in human medullary thyroid carcinomas RL Mol. Cell. Biol. 16:5335-5345 (1996). XX // AC M00258 XX ID V$ISRE_01 XX DT 02.12.1996 (created); ewi. DT 02.12.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA ISRE XX DE interferon-stimulated response element XX BF T00428; ISGF-3; Species: human, Homo sapiens. XX P0 A C G T 01 1 8 2 2 C 02 12 0 1 0 A 03 0 0 13 0 G 04 0 0 0 13 T 05 0 0 0 13 T 06 0 0 0 13 T 07 0 13 0 0 C 08 7 1 1 4 W 09 1 7 2 3 C 10 1 0 0 12 T 11 0 0 0 13 T 12 0 3 0 10 T 13 0 8 0 5 Y 14 2 7 2 2 C 15 1 8 3 1 C XX BA 13 elements from 11 genes XX CC compiled and aligned sequences XX RN [1]; RE0003477. RX PUBMED: 3371658. RA Levy D. E., Kessler D. S., Pine R., Reich N., Darnell jr J. E. RT Interferon-induced nuclear factors that bind a shared promoter element correlate with positive and negative control RL Genes Dev. 2:383-393 (1988). XX // AC M00259 XX ID I$STAT_01 XX DT 02.12.1996 (created); ewi. DT 02.12.1996 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA STAT XX DE signal transducers and activators of transcription XX BF T01988; STAT; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 7 5 9 7 N 02 7 7 8 6 N 03 12 6 5 7 N 04 5 7 9 9 N 05 9 5 6 10 N 06 2 0 0 28 T 07 0 0 0 30 T 08 0 0 0 30 T 09 0 30 0 0 C 10 2 21 4 3 C 11 4 14 11 1 S 12 3 4 20 3 G 13 0 0 30 0 G 14 30 0 0 0 A 15 30 0 0 0 A 16 30 0 0 0 A 17 4 8 5 12 N 18 7 6 9 6 N 19 5 8 8 5 N 20 6 8 2 10 N 21 9 3 7 7 N XX BA 30 selected binding sequences XX CC sequences were selected from a pool of 26-mers by 6 rounds of immunoprecipitation and amplification from D-STAT-transfected S2 cell extracts XX RN [1]; RE0005083. RX PUBMED: 8608596. RA Yan R., Small S., Desplan C., Dearolf C. R., Darnell jr J. E. RT Identification of a STAT gene that functions in Drosophila development RL Cell 84:421-430 (1996). XX // AC M00260 XX ID V$HLF_01 XX DT 20.05.1997 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HLF XX DE hepatic leukemia factor XX BF T01071; Hlf; Species: human, Homo sapiens. XX P0 A C G T 01 6 0 12 0 G 02 0 0 0 18 T 03 1 0 0 17 T 04 14 1 3 0 A 05 0 14 1 3 C 06 7 0 11 0 R 07 1 7 0 10 Y 08 12 5 1 0 A 09 17 0 0 1 A 10 2 3 1 12 T XX BA 18 selected binding sites XX BS GTTACGCAAT; R07805; 5; 10;; p. BS GTTACGCAAT; R07806; 4; 10;; p. BS GTTATGTAAT; R07807; 9; 10;; p. BS ATTACGTAAT; R07808; 5; 10;; p. BS GTTACGTGAT; R07809; 7; 10;; p. BS GTTCGGTAAT; R07810; 7; 10;; p. BS GTTACATAAG; R07811; 8; 10;; p. BS ATTACGCAAT; R07812; 3; 10;; p. BS GTTACGCAAC; R07813; 6; 10;; p. BS GTTGCATAAT; R07814; 3; 10;; p. BS ATTATGCAAT; R07815; 11; 10;; p. BS GTTACATCAA; R07816; 6; 10;; p. BS GTTACACAAC; R07817; 8; 10;; p. BS ATTACATCAT; R07818; 7; 10;; p. BS ATTGCGCAAT; R07819; 4; 10;; p. BS GTTGCATCAC; R07820; 11; 10;; p. BS ATTACGTCTA; R07821; 5; 10;; p. BS GTAATAACAT; R07822; 2; 10;; p. XX CC selected over 5 rounds of selection and amplification from a pool of random dekamers using recombinant HLF XX RN [1]; RE0005827. RX PUBMED: 8065331. RA Hunger S. P., Brown R., Cleary M. L. RT DNA-binding and transcriptional regulatory properties of hepatic leukemia factor (HLF) and the t(17;19) acute lymphoblastic leukemia chimera E2A-HLF RL Mol. Cell. Biol. 14:5986-5996 (1994). XX // AC M00261 XX ID V$OLF1_01 XX DT 22.05.1997 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Olf-1 XX DE olfactory neuron-specific factor XX BF T01040; Olf-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 2 3 2 1 N 02 3 1 2 2 N 03 2 5 1 0 C 04 3 0 2 3 D 05 6 0 1 1 A 06 0 3 2 3 B 07 0 0 0 8 T 08 0 8 0 0 C 09 0 8 0 0 C 10 0 7 0 1 C 11 1 4 0 3 Y 12 4 1 2 1 A 13 2 0 6 0 G 14 3 0 5 0 R 15 0 0 8 0 G 16 5 0 2 1 A 17 3 1 4 0 R 18 0 2 3 3 B 19 2 1 2 3 N 20 0 1 3 4 K 21 2 1 5 0 G 22 1 2 2 3 N XX BA 8 genomic binding sites from 5 genes XX BS GGAGAGTCCCTAGGGAGCTTGG; R07823; 4; 22;; p. BS GTATATTCCCTTGAGGAGAGAT; R07824; 3; 22;; p. BS ACCAATTCCCCCAAGAATTCCT; R07825; 4; 22;; p. BS CAGGATTCCCCAGGGAGGGGAC; R07826; 4; 22;; p. BS AGCAACTCCCTGGAGGCTGTGG; R07827; 1; 22;; p. BS CACATCTCCCAGGGGAGGTGGA; R07828; 2; 22;; p. BS CTCTGGTCCCCAAGGAGCCTGT; R07829; 2; 22;; p. BS TACTACTCCTCAGGGTATATGC; R07830; 2; 22;; p. XX CC aligned sequences XX RN [1]; RE0005834. RX PUBMED: 7689152. RA Wang M. M., Tsai R. Y. L., Schrader K. A., Reed R. R. RT Genes encoding components of the olfactory signal transduction cascade contain a DNA binding site that may direct neuronal expression RL Mol. Cell. Biol. 13:5805-5813 (1993). XX // AC M00262 XX ID V$STAF_01 XX DT 29.10.1997 (created); ewi. DT 29.10.1997 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Staf XX DE Se-Cys tRNA gene transcription activating factor XX BF T02247; Staf; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 27.3 15.2 24.2 33.3 N 02 11.9 23.8 11.9 52.4 T 03 6.8 20.5 6.8 65.9 T 04 55.0 3.3 10.0 31.7 W 05 1.6 95.2 0.0 3.2 C 06 0.0 100.0 0.0 0.0 C 07 0.0 100.0 0.0 0.0 C 08 83.9 0.0 14.5 1.6 A 09 3.2 38.7 30.7 27.4 N 10 54.8 35.6 9.6 0.0 M 11 91.8 1.4 6.8 0.0 A 12 1.4 0.0 1.4 97.2 T 13 0.0 19.2 75.3 5.5 G 14 1.4 97.2 1.4 0.0 C 15 74.6 15.5 2.9 7.0 A 16 23.4 34.4 0.0 42.2 Y 17 1.9 46.3 3.7 48.1 Y 18 29.3 2.4 58.5 9.8 R 19 3.2 77.4 9.7 9.7 C 20 23.1 7.7 61.5 7.7 G 21 21.4 35.7 14.3 28.6 N 22 7.7 38.5 15.4 38.4 Y XX BA 73 selected binding sequences XX CC sequences were selected from random 17-mers by virtue of binding to bacterially expressed Gst-Staf hybrid protein by six rounds of selection and amplification XX RN [1]; RE0005958. RX PUBMED: 9009278. RA Schaub M., Myslinski E., Schuster C., Krol A., Carbon P. RT Staf, a promiscuous activator for enhanced transcription by RNA polymerases II and IIII RL EMBO J. 16:173-181 (1997). XX // AC M00263 XX ID F$STUAP_01 XX DT 29.10.1997 (created); ewi. DT 10.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA StuAp XX DE Aspergillus Stunted protein XX BF T02248; StuAp; Species: Aspergillus nidulans, Emericella nidulans. XX P0 A C G T 01 3 3 3 1 N 02 6 0 1 3 W 03 4 1 0 5 W 04 0 10 0 0 C 05 0 0 10 0 G 06 0 10 0 0 C 07 0 0 10 0 G 08 4 2 0 4 W 09 3 4 3 0 V 10 4 4 0 2 M XX BA 10 binding sites found in 5 genes XX BS AGACGCGTCT; R07831; 1; 10;; p. BS GAACGCGTGA; R07832; 1; 10;; p. BS TTTCGCGACA; R07833; 1; 10;; p. BS AATCGCGAGA; R07834; 1; 10;; p. BS CTTCGCGAAC; R07835; 1; 10;; p. BS CTTCGCGCAA; R07836; 1; 10;; p. BS GAACGCGAAC; R07837; 1; 10;; p. BS GAACGCGCCC; R07838; 1; 10;; p. BS CACCGCGTCC; R07839; 1; 10;; p. BS AATCGCGTGT; R07840; 1; 10;; p. XX CC compiled genomic sequences XX RN [1]; RE0005955. RX PUBMED: 9312029. RA Dutton J. R., Johns S., Miller B. L. RT StuAp is a sequence-specific transcription factor that regulates developmental complexity in Aspergillus nidulans RL EMBO J. 16:5710-5721 (1997). XX // AC M00264 XX ID V$STAF_02 XX DT 29.10.1997 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Staf XX DE Se-Cys tRNA gene transcription activating factor XX BF T02247; Staf; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 5 3 1 1 M 02 2 3 1 4 N 03 0 2 2 6 T 04 2 1 0 7 T 05 1 8 0 1 C 06 0 10 0 0 C 07 0 10 0 0 C 08 9 0 1 0 A 09 1 1 3 5 K 10 3 5 2 0 M 11 6 1 2 1 A 12 0 0 2 8 T 13 0 2 5 3 K 14 0 10 0 0 C 15 4 5 0 1 M 16 3 1 1 5 W 17 2 2 1 5 N 18 1 1 7 1 G 19 3 7 0 0 C 20 3 1 4 1 R 21 4 2 2 0 A XX BA 10 genomic binding sites from 4 pol II and 5 pol III genes XX CC compiled sequences XX RN [1]; RE0005958. RX PUBMED: 9009278. RA Schaub M., Myslinski E., Schuster C., Krol A., Carbon P. RT Staf, a promiscuous activator for enhanced transcription by RNA polymerases II and IIII RL EMBO J. 16:173-181 (1997). XX // AC M00266 XX ID I$CROC_01 XX DT 24.11.1997 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Croc XX DE Crocodile regulator of head development XX BF T02291; Croc; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 4 2 0 3 W 02 7 1 0 3 A 03 5 2 2 2 N 04 8 1 2 1 A 05 10 0 5 0 A 06 0 0 0 15 T 07 15 0 0 0 A 08 15 0 0 0 A 09 15 0 0 0 A 10 0 3 0 12 T 11 15 0 0 0 A 12 1 1 4 9 T 13 6 3 2 4 N 14 5 3 3 4 N 15 2 2 5 5 N 16 3 2 6 1 N XX BA 15 selected binding sequences XX CC oligonucleotides binding to bacterially expressed Croc were selected from random 16-mers by gel shift and amplified in 3 PCR cycles; out of 60 clones obtained, only those fitting to the RTAAAYA consensus were evaluated XX RN [1]; RE0006382. RX PUBMED: 7489720. RA Haecker U., Kaufmann E., Hartmann C., Juergens G., Knoechel W., Jaeckle H. RT The Drosophila fork head domain protein crocodile is required for the establishment of head structures RL EMBO J. 14:5306-5317 (1995). XX // AC M00267 XX ID V$XFD1_01 XX DT 24.11.1997 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA XFD-1 XX DE Xenopus fork head domain factor 1 XX BF T01051; FOXA4a; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 1 3 0 2 Y 02 4 0 1 1 A 03 2 1 0 3 W 04 2 0 4 0 G 05 0 0 0 6 T 06 6 0 0 0 A 07 6 0 0 0 A 08 6 0 0 0 A 09 0 2 0 4 T 10 6 0 0 0 A 11 3 1 0 2 W 12 2 0 1 3 W 13 2 0 3 1 R 14 0 3 1 2 Y XX BA 6 selected sequences XX BS TTTGTAAATATAGC; R07866; 1; 14;; p. BS CATGTAAACAATAC; R07867; 1; 14;; p. BS CATATAAACAAGGT; R07868; 1; 14;; p. BS AACGTAAATACAGC; R07869; 1; 14;; p. BS TGAGTAAATATTTG; R07870; 1; 14;; p. BS CAAATAAATAATAT; R07871; 1; 14;; p. XX CC genomic binding sites were selected by affinity chromatography with bacterially expressed beta-gal-XFD-1 fusion protein XX RN [1]; RE0006387. RX PUBMED: 7739038. RA Kaufmann E., Mueller D., Knoechel W. RT DNA recognition site analysis of Xenopus winged helix proteins RL J. Mol. Biol. 248:239-254 (1995). XX // AC M00268 XX ID V$XFD2_01 XX DT 24.11.1997 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA XFD-2 XX DE Xenopus fork head domain factor 2 XX BF T02294; FOXI1a; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 3 1 0 2 W 02 2 1 1 2 N 03 2 0 0 4 T 04 5 0 1 0 A 05 0 0 0 6 T 06 6 0 0 0 A 07 6 0 0 0 A 08 6 0 0 0 A 09 0 5 0 1 C 10 6 0 0 0 A 11 2 0 1 3 W 12 2 1 1 2 N 13 1 2 2 1 N 14 3 0 2 1 R XX BA 6 selected sequences XX BS AATGTAAACATACA; R07872; 1; 14;; p. BS CCTATAAACAAGGG; R07873; 1; 14;; p. BS AGTATAAACATTGA; R07874; 1; 14;; p. BS TTAATAAACAACCT; R07875; 1; 14;; p. BS ATAATAAACAGTAG; R07876; 1; 14;; p. BS TATATAAATATATA; R07877; 1; 14;; p. XX CC genomic binding sites were selected by affinity chromatography with bacterially expressed beta-gal-XFD-2 fusion protein XX RN [1]; RE0006387. RX PUBMED: 7739038. RA Kaufmann E., Mueller D., Knoechel W. RT DNA recognition site analysis of Xenopus winged helix proteins RL J. Mol. Biol. 248:239-254 (1995). XX // AC M00269 XX ID V$XFD3_01 XX DT 25.11.1997 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA XFD-3 XX DE Xenopus fork head domain factor 3 XX BF T01053; HNF-3beta; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 2 0 0 4 T 02 1 1 3 1 N 03 3 0 1 2 W 04 0 0 6 0 G 05 0 0 0 6 T 06 4 2 0 0 A 07 6 0 0 0 A 08 6 0 0 0 A 09 0 5 0 1 C 10 6 0 0 0 A 11 4 0 0 2 A 12 3 1 0 2 W 13 3 2 0 1 M 14 3 0 1 2 W XX BA 6 selected sequences XX BS TGTGTAAACAAATG; R07878; 1; 14;; p. BS AGAGTAAACAACAT; R07879; 1; 14;; p. BS TGAGTAAATATTCT; R07880; 1; 14;; p. BS TAAGTCAACAAAAA; R07881; 1; 14;; p. BS TTGGTAAACATTAA; R07882; 1; 14;; p. BS ACTGTCAACAAACA; R07883; 1; 14;; p. XX CC genomic binding sites were selected by affinity chromatography with bacterially expressed beta-gal-XFD-3 fusion protein XX RN [1]; RE0006387. RX PUBMED: 7739038. RA Kaufmann E., Mueller D., Knoechel W. RT DNA recognition site analysis of Xenopus winged helix proteins RL J. Mol. Biol. 248:239-254 (1995). XX // AC M00270 XX ID I$GCM_01 XX DT 27.11.1997 (created); ewi. DT 27.11.1997 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA GCM XX DE glial cells missing XX BF T02302; GCM; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 36 28 28 8 N 02 33 15 26 26 N 03 68 10 32 0 A 04 0 98 0 2 C 05 0 100 0 0 C 06 10 88 0 2 C 07 0 2 98 0 G 08 2 92 0 6 C 09 100 0 0 0 A 10 2 9 2 87 T 11 43 26 17 14 N 12 24 24 10 43 N 13 26 16 21 37 N XX BA 48 selected sequences XX CC sequences binding to bacterially synthesized MBP-GCM fusion protein were selected from a pool of random 15-mers by three rounds of gel retardation and PCR amplification XX RN [1]; RE0006396. RX PUBMED: 8962155. RA Akiyama Y., Hosoya T., Poole A. M., Hotta Y. RT The gcm-motif: a novel DNA-binding motif conserved in Drosophila and mammals RL Proc. Natl. Acad. Sci. USA 93:14912-14916 (1996). XX // AC M00271 XX ID V$AML1_01 XX DT 05.12.1997 (created); ewi. DT 10.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AML-1a XX DE runt-factor AML-1 XX BF T02256; AML1a; Species: human, Homo sapiens. XX P0 A C G T 01 5 1 1 50 T 02 2 2 53 0 G 03 4 14 0 39 T 04 0 0 57 0 G 05 1 0 56 0 G 06 1 3 0 53 T XX BA 57 suggested binding sites contained in 38 selected sequences XX BS TGTGGT; R07884; 18; 6;; p. BS TGCGGT; R07885; 30; 6;; p. BS TGTGGT; R07886; 13; 6;; p. BS GGTGGT; R07887; 27; 6;; n. BS AGTGGT; R07888; 26; 6;; p. BS AGTGGT; R07889; 26; 6;; p. BS TGTGGT; R07890; 9; 6;; p. BS TATGGT; R07891; 15; 6;; p. BS TGTGGT; R07892; 12; 6;; p. BS TGTGGT; R07893; 12; 6;; p. BS TCTGGT; R07894; 26; 6;; p. BS TGCGGT; R07895; 2; 6;; n. BS TGTGGC; R07896; 22; 6;; p. BS TGCGGT; R07897; 6; 6;; p. BS TGAGGT; R07898; 14; 6;; p. BS TGTGGT; R07899; 24; 6;; p. BS TGTGGT; R07900; 24; 6;; p. BS TGTGGA; R07901; 10; 6;; n. BS TGTGGT; R07902; 30; 6;; p. BS AGTGGT; R07903; 2; 6;; n. BS TGTGGT; R07904; 29; 6;; p. BS AGTGGT; R07905; 2; 6;; n. BS TGCGGT; R07906; 7; 6;; p. BS TGTGGC; R07907; 22; 6;; n. BS TGCGGT; R07908; 29; 6;; p. BS TGTGGT; R07909; 30; 6;; p. BS TGCGGT; R07910; 14; 6;; p. BS TCTGGT; R07911; 8; 6;; p. BS TGTGGT; R07912; 28; 6;; p. BS TGTGGT; R07913; 8; 6;; p. BS TGTGGT; R07914; 8; 6;; p. BS TATGGT; R07915; 19; 6;; p. BS TGAGGT; R07916; 28; 6;; p. BS CGTGGT; R07917; 24; 6;; p. BS TGTGGT; R07918; 15; 6;; p. BS TGAGGT; R07919; 22; 6;; n. BS TGTGGT; R07920; 24; 6;; p. BS TGTGGT; R07921; 3; 6;; n. BS AGTGGT; R07922; 24; 6;; p. BS TGTGGT; R07923; 15; 6;; p. BS TGCGGT; R07924; 9; 6;; p. BS TGTGGT; R07925; 25; 6;; p. BS TGCGGT; R07926; 10; 6;; p. BS TGCGGT; R07927; 30; 6;; p. BS TGCGGT; R07928; 14; 6;; p. BS TGTGGC; R07929; 13; 6;; n. BS TGTGGT; R07930; 25; 6;; p. BS TGCGGT; R07931; 17; 6;; p. BS TGCGGT; R07932; 20; 6;; p. BS TGTGAT; R07933; 4; 6;; p. BS TGCGGT; R07934; 12; 6;; p. BS TGTGGT; R07935; 30; 6;; p. BS TGCGGT; R07936; 24; 6;; p. BS TGTGGT; R07937; 16; 6;; p. BS TGTGGT; R07938; 16; 6;; p. BS TGAGGT; R07939; 2; 6;; n. BS TGTGGT; R07940; 20; 6;; p. XX CC sequences that bind to bacterially expressed and immobilized GST-AML-1a fusion protein were selected from a pool of random 30-mers by 6 rounds of selection and PCR amplification XX RN [1]; RE0025142. RA TRANSFAC_Team. RT Revision of alignment RL TRANSFAC Reports Rel84:0002 (2004). RN [2]; RE0006578. RA TRANSFAC_Team. RT Revisions of TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0001 (1998). RN [3]; RE0006067. RX PUBMED: 8413232. RA Meyers S., Downing J. R., Hiebert S. W. RT Identification of AML-1 and the (8;21) translocation protein (AML-1/ETO) as sequence-specific DNA-binding proteins:the runt homology domain is required for DNA binding and protein-protein interactions RL Mol. Cell. Biol. 13:6336-6345 (1993). XX // AC M00272 XX ID V$P53_02 XX DT 14.01.1998 (created); ewi. DT 08.03.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA p53 XX DE tumor suppressor p53 XX BF T01806; p53; Species: mouse, Mus musculus. BF T00671; p53; Species: human, Homo sapiens. XX P0 A C G T 01 40 13 23 23 N 02 20 3 70 5 G 03 55 3 40 0 R 04 0 93 0 5 C 05 53 8 8 30 W 06 15 0 3 82 T 07 0 0 100 0 G 08 0 50 0 50 Y 09 0 68 0 30 C 10 12 35 3 48 Y XX BA 20 genomic binding sites XX RN [1]; RE0005434. RX PUBMED: 1301998. RA El-Deiry W. S., Kern S. E., Pietenpol J. A., Kinzler K. W., Vogelstein B. RT Definition of a consensus binding site for p53 RL Nat. Genet. 1:45-49 (1992). XX // AC M00273 XX ID V$R_01 XX DT 16.01.1998 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA R XX DE Epstein-Barr virus transcription factor R XX BF T00710; R; Species: EBV, Epstein-Barr virus. XX P0 A C G T 01 4 10 8 13 N 02 3 7 8 17 N 03 0 1 34 0 G 04 1 3 16 15 K 05 3 29 2 1 C 06 0 35 0 0 C 07 7 5 17 6 N 08 2 22 2 9 C 09 3 14 15 3 S 10 12 7 7 9 N 11 18 2 10 5 R 12 11 4 7 13 N 13 1 20 1 13 Y 14 2 1 32 0 G 15 6 9 0 20 T 16 1 0 33 1 G 17 0 0 34 1 G 18 0 3 0 32 T 19 0 0 35 0 G 20 1 20 4 10 C 21 14 12 3 6 N XX BA 35 selected sequences XX BS TCGGCCTTCTGTCGTGGTGGG; R07941; 1; 21;; p. BS CTGGCCGCCACACGTGGTGTT; R07942; 1; 21;; p. BS CGGGCCACGCTATGCGGTGGC; R07943; 1; 21;; p. BS TTGCCCTTGCAGTGTGGTGTT; R07944; 1; 21;; p. BS TTGTCCGCCAATCGAGGTGCC; R07945; 1; 21;; p. BS CTGGCCGCCACACGTGGTGGA; R07946; 1; 21;; p. BS TCGGCCGTACAACGTGGTGCG; R07947; 1; 21;; p. BS CAGGCCTGCTAACGTGGTGCA; R07948; 1; 21;; p. BS CGGGCCACGCTATGCGGTGCA; R07949; 1; 21;; p. BS CCGGGCGCGTACTGCGGTGCC; R07950; 1; 21;; p. BS TTGTCCGCCAATCGAGGTGCC; R07951; 1; 21;; p. BS AGGTACTCCGATTGTGGTGCC; R07952; 1; 21;; p. BS GTGGCCGTGTGGCGTGGTGTT; R07953; 1; 21;; p. BS CAGGTCGCGGAGCGCGGTGTA; R07954; 1; 21;; p. BS TTGGCCGCGCGGCGTAGTGTT; R07955; 1; 21;; p. BS AGGGCCACCAAACGATGTGCA; R07956; 1; 21;; p. BS AGCCCCTGTAGGCGTGGTGTA; R07957; 1; 21;; p. BS CTGTCCCTGGGCCGTGGTGTC; R07958; 1; 21;; p. BS TGGGCCATGCAAGATGGTGTA; R07959; 1; 21;; p. BS GTGTACGCACAACGCGGTGCA; R07960; 1; 21;; p. BS TTGTCCGCCAATCGAGGTGCA; R07961; 1; 21;; p. BS GTGGCCGTATACCATGGTGCT; R07962; 1; 21;; p. BS CTGTCCCAGTATCGTGGTGCA; R07963; 1; 21;; p. BS AGGAGCGACGTGTCAGGTGGC; R07964; 1; 21;; p. BS TTGTCCCCGGGTTGTGGCGCA; R07965; 1; 21;; p. BS GTGTACTCGGTTCGTGGTGCC; R07966; 1; 21;; p. BS TCGCCCCTTAATAGTGGTGTA; R07967; 1; 21;; p. BS CAGTCCACTATCTGTGGTGCG; R07968; 1; 21;; p. BS GGGTCCGTCTGACGCGGTGCC; R07969; 1; 21;; p. BS GCGTCCACCTGATGCGGCGAA; R07970; 1; 21;; p. BS TTGTCCGCCAATCGAGGTGCC; R07971; 1; 21;; p. BS GCGGCCGCCAATTGTGGTGCC; R07972; 1; 21;; p. BS GTGTCCGCGTGGTGCGGTGCC; R07973; 1; 21;; p. BS TTGTCCCCGGGTTGTGGTGCT; R07974; 1; 21;; p. BS TCGGCCACGAATTGCGTCGTA; R07975; 1; 21;; p. XX CC oligonucleotides binding to bacterially expressed R protein were selected from a pool of random 23-mers by gel shift and PCR amplification over four rounds XX RN [1]; RE0006521. RX PUBMED: 8165130. RA Gruffat H., Sergeant A. RT Characterization of the DNA-binding site repertoire for the epstein-barr virus transcription factor R RL Nucleic Acids Res. 22:1172-1178 (1994). XX // AC M00274 XX ID F$STE11_01 XX DT 16.02.1998 (created); ewi. DT 17.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA STE11 XX DE TR-boxes interacting with ubiquitous factor STE11 XX BF T01422; ste11; Species: fission yeast, Schizosaccharomyces pombe. XX P0 A C G T 01 6 2 4 5 N 02 9 1 2 5 W 03 5 4 5 3 N 04 2 2 0 13 T 05 0 0 0 17 T 06 0 1 0 16 T 07 0 17 0 0 C 08 0 0 0 17 T 09 0 0 0 17 T 10 0 0 0 17 T 11 0 0 17 0 G 12 0 0 0 17 T 13 0 0 0 17 T 14 4 5 1 7 N 15 5 3 4 5 N 16 5 5 1 6 N 17 6 2 2 7 W 18 7 0 1 9 W XX BA 17 genomic sites of 9 genes XX BS GTATTTCTTTGTTCTTTA; R07976; 1; 18;; p. BS AACTTTCTTTGTTCGGTT; R07977; 1; 18;; p. BS GTGTTTCTTTGTTACAAA; R07978; 1; 18;; p. BS CGATTTCTTTGTTCCTAT; R07979; 1; 18;; p. BS AAGTTTCTTTGTTTTACA; R07980; 1; 18;; p. BS GAGATTCTTTGTTTACTT; R07981; 1; 18;; p. BS TAACTTCTTTGTTCTCTA; R07982; 1; 18;; p. BS TCTTTTCTTTGTTTGTTT; R07983; 1; 18;; p. BS ATTTTTCTTTGTTTACAT; R07984; 1; 18;; p. BS TACATCCTTTGTTTACAA; R07985; 1; 18;; p. BS AAGTTTCTTTGTTAATGT; R07986; 1; 18;; p. BS AACTTTCTTTGTTATTGT; R07987; 1; 18;; p. BS TGCTTTCTTTGTTATAAA; R07988; 1; 18;; p. BS GAATTTCTTTGTTTACTA; R07989; 1; 18;; p. BS TTGTTTCTTTGTTGCAAT; R07990; 1; 18;; p. BS ATTTTTCTTTGTTTGACG; R07991; 1; 18;; p. BS CAACTTCTTTGTTCGTTT; R07992; 1; 18;; p. XX CC compiled sequences from genes that are expressed in S. pombe M and P cells XX RN [1]; RE0006527. RX PUBMED: 9233811. RA Kjaerulff S., Dooijes D., Clevers H., Nielsen O. RT Cell differentiation by interaction of two HMG-box proteins: Mat1-Mc activates M cell-specific genes in S. pombe by recruiting the ubiquitous transcription factor Ste11 to weak binding sites RL EMBO J. 16:4021-4033 (1997). XX // AC M00275 XX ID F$MAT1MC_01 XX DT 16.02.1998 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Mat1-Mc XX DE TR-boxes of M cell-specific genes interacting with Mat1-Mc XX BF T01275; mat1-Mc; Species: fission yeast, Schizosaccharomyces pombe. XX P0 A C G T 01 4 0 1 1 A 02 0 0 4 2 G 03 3 0 2 1 R 04 0 3 1 2 Y 05 0 2 2 2 B 06 0 1 0 5 T 07 0 6 0 0 C 08 0 0 0 6 T 09 0 0 0 6 T 10 0 0 0 6 T 11 0 0 6 0 G 12 0 0 0 6 T 13 0 0 0 6 T 14 1 1 3 1 N 15 2 1 2 1 N 16 0 1 2 3 K 17 1 2 0 3 Y 18 3 1 1 1 A XX BA 6 genomic sites of 3 genes XX BS ATGGGCCTTTGTTAGGTA; R07993; 1; 18;; p. BS ATTCCTCTTTGTTTAGAA; R07994; 1; 18;; p. BS AGACTTCTTTGTTGGTCG; R07995; 1; 18;; p. BS TGATCTCTTTGTTCATTT; R07996; 1; 18;; p. BS AGACTTCTTTGTTGTTTC; R07997; 1; 18;; p. BS GGGTGTCTTTGTTGCCCA; R07998; 1; 18;; p. XX CC compiled sequences of genes specifically expressed in M-cells XX RN [1]; RE0006527. RX PUBMED: 9233811. RA Kjaerulff S., Dooijes D., Clevers H., Nielsen O. RT Cell differentiation by interaction of two HMG-box proteins: Mat1-Mc activates M cell-specific genes in S. pombe by recruiting the ubiquitous transcription factor Ste11 to weak binding sites RL EMBO J. 16:4021-4033 (1997). XX // AC M00276 XX ID F$MAT1MC_02 XX DT 17.02.1998 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Mat1-Mc XX DE M-box interacting with Mat1-Mc XX BF T01275; mat1-Mc; Species: fission yeast, Schizosaccharomyces pombe. XX P0 A C G T 01 0 4 0 6 Y 02 0 7 0 3 C 03 2 4 1 3 N 04 9 0 0 1 A 05 1 0 0 9 T 06 0 0 0 10 T 07 0 0 10 0 G 08 0 0 0 10 T 09 1 3 0 6 T 10 3 0 2 5 W XX BA 10 elements of 6 genes XX CC compiled sequences with TR-boxes revealed adjacent M-box elements which do bind STE11 only weakly, but strongly interact with Mat1-Mc XX RN [1]; RE0006527. RX PUBMED: 9233811. RA Kjaerulff S., Dooijes D., Clevers H., Nielsen O. RT Cell differentiation by interaction of two HMG-box proteins: Mat1-Mc activates M cell-specific genes in S. pombe by recruiting the ubiquitous transcription factor Ste11 to weak binding sites RL EMBO J. 16:4021-4033 (1997). XX // AC M00277 XX ID V$LMO2COM_01 XX DT 17.02.1998 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Lmo2 complex XX DE complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 1 XX BF T02250; Lmo2; Species: human, Homo sapiens. BF T02251; Lmo2; Species: mouse, Mus musculus. XX P0 A C G T 01 3 16 8 3 C 02 4 10 11 6 N 03 6 12 10 3 N 04 0 31 0 0 C 05 31 0 0 0 A 06 2 0 24 5 G 07 2 8 21 0 G 08 0 0 0 31 T 09 0 0 31 0 G 10 0 14 8 9 B 11 10 5 4 10 N 12 3 8 14 6 N XX BA 31 selected binding sequences XX BS GGGCATATGGCT; R08009; 2; 12;; p. BS TCCAGGTGCAC; R08010; 1; 12; 1; p. BS CGCCAGCTGCAC; R08011; 2; 12;; p. BS CGGCAGGTGGTG; R08012; 2; 12;; p. BS GTACAGGTGCAG; R08013; 2; 12;; p. BS CGGCAGCTGCAG; R08014; 2; 12;; p. BS CCTCAACTGCCG; R08015; 3; 12;; p. BS CGACAGCTGTTG; R08016; 3; 12;; p. BS CGACAGGTGTTG; R08017; 2; 12;; p. BS CGACAGGTGTNC; R08018; 1; 12;; p. BS CCGCATCTGGTG; R08019; 4; 12;; p. BS GGCCAGGTGCTC; R08020; 2; 12;; p. BS CCTCAGGTGCAG; R08021; 1; 12;; p. BS CGGCAGGTGGTT; R08022; 1; 12;; p. BS ATGCAGGTGGGG; R08023; 4; 12;; p. BS GCACAGGTGGGG; R08024; 2; 12;; p. BS CACCATCTGCTT; R08025; 3; 12;; p. BS CTCCAGCTGCAA; R08026; 1; 12;; p. BS GTGCAGGTGGCC; R08027; 1; 12;; p. BS GCCCAGGTGGCT; R08028; 4; 12;; p. BS GACCAGGTGCNT; R08029; 4; 12;; p. BS AACCAGGTGCTG; R08030; 4; 12;; p. BS CTCCAGGTGTAA; R08031; 4; 12;; p. BS TCCCAGGTGTGC; R08032; 3; 12;; p. BS CGACAGCTGTTA; R08033; 2; 12;; p. BS AACCAGGTGTTC; R08034; 4; 12;; p. BS TCGCATGTGCAG; R08035; 1; 12;; p. BS CGGCATGTGCCG; R08036; 2; 12;; p. BS GCCCAGGTGTAG; R08037; 3; 12;; p. BS TCGCAGGTGCAT; R08038; 1; 12;; p. BS CCTCAAATGTGC; R08039; 1; 12;; p. XX CC sequences bound to Lmo2-containing complexes in MEL cell extracts were selected with anti-Lmo2 from random 26-mers and amplified by PCR over 4 rounds of CASTing; the matrix refers to the E-box half site of the selected sequences XX RN [1]; RE0005956. RX PUBMED: 9214632. RA Wadman I. A., Osada H., Gruetz G. G., Agulnick A. D., Westphal H., Forster A., Rabbitts T. H. RT The LIM-only protein Lmo2 is a bridging molecule assembling an erythroid, DNA-binding complex which includes the TAL1, E47, GATA-1 and Ldb1/NLI proteins RL EMBO J. 16:3145-3157 (1997). XX // AC M00278 XX ID V$LMO2COM_02 XX DT 17.02.1998 (created); ewi. DT 17.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Lmo2 complex XX DE complex of Lmo2 bound to Tal-1, E2A proteins, and GATA-1, half-site 2 XX BF T02250; Lmo2; Species: human, Homo sapiens. BF T02251; Lmo2; Species: mouse, Mus musculus. XX P0 A C G T 01 5 14 6 5 N 02 14 11 0 6 M 03 0 0 31 0 G 04 31 0 0 0 A 05 0 0 0 31 T 06 31 0 0 0 A 07 10 7 11 3 N 08 1 11 15 4 S 09 3 8 19 1 G XX BA 31 selected binding sequences XX BS GCGATAAGG; R08040; 17; 9;; p. BS ACGATAAGG; R08041; 15; 9;; p. BS GCGATACGG; R08042; 17; 9;; p. BS CCGATAGCC; R08043; 17; 9;; p. BS GCGATAGTC; R08044; 17; 9;; p. BS TTGATAAGC; R08045; 17; 9;; p. BS CCGATAGCG; R08046; 18; 9;; p. BS GCGATACGA; R08047; 18; 9;; p. BS CAGATAAAC; R08048; 18; 9;; p. BS TAGATAACG; R08049; 17; 9;; p. BS TAGATAGTG; R08050; 20; 9;; p. BS CTGATACCG; R08051; 18; 9;; p. BS NAGATAGGC; R08052; 17; 9;; p. BS TAGATACGC; R08053; 17; 9;; p. BS CTGATATGA; R08054; 20; 9;; p. BS CAGATAGTG; R08055; 18; 9;; p. BS CCGATAGGC; R08056; 19; 9;; p. BS ACGATACGG; R08057; 17; 9;; p. BS CCGATATGG; R08058; 17; 9;; p. BS CAGATAACG; R08059; 20; 9;; p. BS ACGATAGCG; R08060; 20; 9;; p. BS CTGATACCG; R08061; 20; 9;; p. BS AAGATACCG; R08062; 20; 9;; p. BS AAGATAACA; R08063; 19; 9;; p. BS GTGATAATT; R08064; 18; 9;; p. BS CTGATATCG; R08065; 20; 9;; p. BS CAGATAACC; R08066; 17; 9;; p. BS CAGATAGGG; R08067; 18; 9;; p. BS GAGATAGGG; R08068; 20; 9;; p. BS TAGATAAGG; R08069; 18; 9;; p. BS CAGATAGGG; R08070; 19; 9;; p. XX CC sequences bound to Lmo2-containing complexes in MEL cell extracts were selected with anti-Lmo2 from random 26-mers and amplified by PCR over 4 rounds of CASTing; the matrix refers to the GATA half site of the selected sequences XX RN [1]; RE0005956. RX PUBMED: 9214632. RA Wadman I. A., Osada H., Gruetz G. G., Agulnick A. D., Westphal H., Forster A., Rabbitts T. H. RT The LIM-only protein Lmo2 is a bridging molecule assembling an erythroid, DNA-binding complex which includes the TAL1, E47, GATA-1 and Ldb1/NLI proteins RL EMBO J. 16:3145-3157 (1997). XX // AC M00279 XX ID V$MIF1_01 XX DT 18.02.1998 (created); ewi. DT 18.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA MIF-1 XX DE MIBP-1 / RFX1 complex XX BF T01047; MIF-1; Species: human, Homo sapiens. XX P0 A C G T 01 1 2 1 2 N 02 2 2 1 1 N 03 0 0 6 0 G 04 0 0 1 5 T 05 0 0 0 6 T 06 0 1 4 0 G 07 0 5 0 0 C 08 2 0 0 3 W 09 3 1 0 2 W 10 1 0 4 0 G 11 0 0 6 0 G 12 0 3 0 3 Y 13 5 1 0 0 A 14 6 0 0 0 A 15 0 6 0 0 C 16 1 1 2 2 N 17 0 1 4 1 G 18 0 2 3 1 S XX BA 6 elements of 4 viral and 2 cellular regulatory regions XX CC compiled sequences XX RN [1]; RE0006616. RX PUBMED: 7760800. RA Reinhold W., Emens L., Itkes A., Blake M., Ichinose I., Zajac-Kaye M. RT The myc intron-binding polypeptide associates with RFX1 in vivo and binds to the major histocompatibility complex class II promoter region, to the hepatitis B virus enhancer, and to regulatory regions of several distinct viral genes RL Mol. Cell. Biol. 15:3041-3048 (1995). XX // AC M00280 XX ID V$RFX1_01 XX DT 18.02.1998 (created); ewi. DT 18.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA RFX1 XX DE X-box binding protein RFX1 XX BF T00231; RFX1; Species: mouse, Mus musculus. BF T01666; RFX1; Species: mouse, Mus musculus. BF T00230; RFX1; Species: human, Homo sapiens. BF T00728; RFX1; Species: human, Homo sapiens. BF T00909; RFX1; Species: human, Homo sapiens. BF T01673; RFX1; Species: human, Homo sapiens. XX P0 A C G T 01 5 5 6 8 N 02 10 4 8 6 N 03 6 4 22 0 G 04 3 2 7 20 T 05 11 10 2 9 N 06 13 1 17 1 R 07 3 25 1 3 C 08 4 14 7 7 N 09 4 2 0 6 W 10 11 3 17 1 R 11 0 0 32 0 G 12 3 16 3 10 Y 13 30 0 1 1 A 14 32 0 0 0 A 15 0 32 0 0 C 16 11 9 7 4 N 17 11 3 5 10 N XX BA 32 selected binding sequences, two half-site matrices joined by 1-nucleotide spacing deduced from 12 sequences XX CC sequences were selected from random 20- and 30-mers with in vitro translated RFX1, isolated by gel electrophoresis and PCR-amplified over 3-4 rounds XX RN [1]; RE0006617. RX PUBMED: 8754849. RA Emery P., Strubin M., Hofmann K., Bucher P., Mach B., Reith W. RT A consensus motif in the RFX DNA binding domain and binding domain mutants with altered specificity RL Mol. Cell. Biol. 16:4486-4494 (1996). XX // AC M00281 XX ID V$RFX1_02 XX DT 18.02.1998 (created); ewi. DT 18.02.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA RFX1 XX DE X-box binding protein RFX1 XX BF T00231; RFX1; Species: mouse, Mus musculus. BF T01666; RFX1; Species: mouse, Mus musculus. BF T00230; RFX1; Species: human, Homo sapiens. BF T00728; RFX1; Species: human, Homo sapiens. BF T00909; RFX1; Species: human, Homo sapiens. BF T01673; RFX1; Species: human, Homo sapiens. XX P0 A C G T 01 5 5 6 8 N 02 10 4 8 6 N 03 6 4 22 0 G 04 3 2 7 20 T 05 11 10 2 9 N 06 13 1 17 1 R 07 3 25 1 3 C 08 4 14 7 7 N 09 9 3 2 2 A 10 4 2 0 10 T 11 11 3 17 1 R 12 0 0 32 0 G 13 3 16 3 10 Y 14 30 0 1 1 A 15 32 0 0 0 A 16 0 32 0 0 C 17 11 9 7 4 N 18 11 3 5 10 N XX BA 32 selected binding sequences, two half-site matrices joined by 2-nucleotide spacing deduced from 12 sequences XX CC sequences were selected from random 20- and 30-mers with in vitro translated RFX1, isolated by gel electrophoresis and PCR-amplified over 3-4 rounds XX RN [1]; RE0006617. RX PUBMED: 8754849. RA Emery P., Strubin M., Hofmann K., Bucher P., Mach B., Reith W. RT A consensus motif in the RFX DNA binding domain and binding domain mutants with altered specificity RL Mol. Cell. Biol. 16:4486-4494 (1996). XX // AC M00283 XX ID I$ZESTE_Q2 XX DT 02.04.1998 (created); ewi. DT 29.04.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Zeste XX DE Zeste transvection gene product XX BF T00918; Zeste; Species: fruit fly, Drosophila melanogaster. BF T02100; Zeste; Species: fruit fly, Drosophila virilis. XX P0 A C G T 01 4 5 8 9 N 02 8 7 5 6 N 03 11 2 4 9 W 04 8 2 7 9 N 05 4 3 1 18 T 06 0 5 1 20 T 07 0 0 26 0 G 08 26 0 0 0 A 09 0 0 26 0 G 10 1 4 0 21 T 11 0 1 24 1 G 12 10 4 8 4 N 13 9 5 6 6 N 14 9 5 3 9 N 15 8 3 6 9 N 16 7 4 6 9 N XX BA 26 genomic binding sites [2] XX CC compiled sequences, matrix generated by [1] XX RN [1]; RE0006748. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 1:0003 (1998). RN [2]; RE0000414. RX PUBMED: 3145199. RA Benson M., Pirrotta V. RT The Drosophila zeste protein binds cooperatively to sites in many gene regulatory regions: implications for transvection and gene regulation RL EMBO J. 7:3907-3915 (1988). XX // AC M00284 XX ID V$TCF11MAFG_01 XX DT 29.04.1998 (created); ewi. DT 29.04.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA TCF11:MafG XX DE TCF11:MafG heterodimers XX BF T01599; LCR-F1; Species: human, Homo sapiens. BF T01437; MafG; Species: chick, Gallus gallus. XX P0 A C G T 01 4 6 3 1 N 02 4 4 1 5 N 03 6 2 2 4 N 04 5 4 2 3 N 05 5 4 2 3 N 06 9 0 4 1 A 07 0 0 0 14 T 08 0 0 14 0 G 09 14 0 0 0 A 10 0 12 2 0 C 11 3 0 3 8 T 12 2 8 1 2 C 13 11 0 1 2 A 14 1 0 12 1 G 15 0 13 0 1 C 16 13 0 1 0 A 17 6 2 3 3 N 18 3 1 2 8 T 19 4 0 1 9 T 20 5 5 3 1 N 21 3 3 1 7 N 22 1 2 8 2 G XX BA 14 selected binding sequences XX CC sequences were repeatedly selected from random 26-mers by virtue of binding to bacterially expressed TCF11 and MafG XX RN [1]; RE0006838. RX PUBMED: 9421508. RA Johnsen O., Murphy P., Prydz H., Kolsto A.-B. RT Interaction of the CNC-bZIP factor TCF11/LCR-F1/Nrf1 with MafG: binding-site selection and regulation of transcription RL Nucleic Acids Res. 26:512-520 (1998). XX // AC M00285 XX ID V$TCF11_01 XX DT 29.04.1998 (created); ewi. DT 29.04.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA TCF11 XX DE TCF11/KCR-F1/Nrf1 homodimers XX BF T01599; LCR-F1; Species: human, Homo sapiens. XX P0 A C G T 01 3 2 26 0 G 02 0 0 0 31 T 03 0 31 0 0 C 04 31 0 0 0 A 05 1 5 0 25 T 06 5 8 8 10 N 07 7 9 5 10 N 08 11 3 3 14 W 09 9 3 10 9 N 10 4 8 10 9 N 11 8 8 7 7 N 12 8 8 7 7 N 13 5 8 10 6 N XX BA 31 selected binding sequences (half-sites!) XX CC sequences were repeatedly selected from random 26-mers by virtue of binding to bacterially expressed TCF11 XX RN [1]; RE0006838. RX PUBMED: 9421508. RA Johnsen O., Murphy P., Prydz H., Kolsto A.-B. RT Interaction of the CNC-bZIP factor TCF11/LCR-F1/Nrf1 with MafG: binding-site selection and regulation of transcription RL Nucleic Acids Res. 26:512-520 (1998). XX // AC M00287 XX ID V$NFY_01 XX DT 12.06.1998 (created); ewi. DT 12.06.1998 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA NF-Y XX DE nuclear factor Y (Y-box binding factor) XX BF T00084; CBF(2); Species: rat, Rattus norvegicus. BF T00150; NF-Y; Species: human, Homo sapiens. BF T01203; NF-Y; Species: human, Homo sapiens. BF T00083; NF-Y; Species: mouse, Mus musculus. BF T00092; NF-Y; Species: mouse, Mus musculus. BF T00153; NF-Y; Species: mouse, Mus musculus. BF T00613; NF-Y; Species: mouse, Mus musculus. BF T01202; NF-Y; Species: mouse, Mus musculus. XX P0 A C G T 01 52 47 41 22 N 02 22 51 38 52 N 03 16 67 40 41 N 04 80 19 60 5 R 05 68 7 78 11 R 06 0 164 0 0 C 07 2 161 1 0 C 08 160 0 1 3 A 09 164 0 0 0 A 10 0 1 0 163 T 11 20 88 50 6 S 12 96 10 55 3 R 13 21 28 98 17 G 14 58 57 33 16 N 15 47 11 72 34 N 16 34 53 40 35 N XX BA 164 compiled binding sites XX CC not all elements have been experimentally verified XX RN [1]; RE0006901. RX PUBMED: 9469818. RA Mantovani R. RT A survey of 178 NF-Y binding CCAAT boxes RL Nucleic Acids Res. 26:1135-1143 (1998). XX // AC M00288 XX ID F$HAP234_01 XX DT 12.06.1998 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HAP2/3/4 XX DE yeast factor complex HAP2/3/5, homolog to vertebrate NF-Y/CP1/CBF XX BF T00349; HAP2; Species: yeast, Saccharomyces cerevisiae. BF T00350; HAP3; Species: yeast, Saccharomyces cerevisiae. BF T00351; HAP4; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 7 2 2 3 A 02 1 6 0 7 Y 03 1 9 3 1 C 04 4 5 5 0 V 05 6 0 4 4 D 06 0 14 0 0 C 07 0 14 0 0 C 08 14 0 0 0 A 09 14 0 0 0 A 10 0 2 0 12 T 11 4 6 2 2 N 12 13 0 1 0 A 13 3 5 5 1 N 14 7 5 2 0 M 15 4 3 5 2 N 16 5 3 4 2 N XX BA 14 compiled sequences XX CC not all are experimentally verified binding sites XX RN [1]; RE0006901. RX PUBMED: 9469818. RA Mantovani R. RT A survey of 178 NF-Y binding CCAAT boxes RL Nucleic Acids Res. 26:1135-1143 (1998). XX // AC M00289 XX ID V$HFH3_01 XX DT 18.06.1998 (created); tme. DT 29.08.2002 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA HFH-3 XX DE HFH-3 (HNF3/fork head homolog 3) XX BF T02474; FOXI1; Species: human, Homo sapiens. BF T02479; HFH-3; Species: rat, Rattus norvegicus. BF T02487; HFH-3; Species: mouse, Mus musculus. XX P0 A C G T 01 20 3 45 32 K 02 12 26 39 23 N 03 34 12 27 27 N 04 0 0 0 100 T 05 42 0 58 0 R 06 0 0 0 100 T 07 0 0 0 100 T 08 0 0 0 100 T 09 48 0 52 0 R 10 0 23 0 77 T 11 26 3 13 58 T 12 7 3 13 77 T 13 55 6 16 23 A XX BA 31 high affinity binding sites selected from random oligonucleotides XX CC 6 cycles of SAAB (Selection And Amplification of Binding sites) with HFH-3 DNA-binding-domain/GST fusion protein and oligonucleotides containing 14 degenerate positions; relative frequencies stated XX RN [1]; RE0006904. RX PUBMED: 9153225. RA Overdier D. G., Ye H., Peterson R. S., Clevidence D.E., Costa R. H. RT The winged helix transcriptional activator HFH-3 is expressed in the distal tubules of embryonic and adult kidney RL J. Biol. Chem. 272:13725-13730 (1997). XX // AC M00290 XX ID V$FREAC2_01 XX DT 18.06.1998 (created); tme. DT 01.10.1998 (updated); tme. CO Copyright (C), Biobase GmbH. XX NA Freac-2 XX DE Fork head RElated ACtivator-2 XX BF T02465; FOXF2; Species: human, Homo sapiens. XX P0 A C G T 01 1 10 7 9 N 02 10 7 5 5 N 03 17 4 2 4 A 04 13 5 5 4 N 05 3 11 8 5 N 06 7 0 20 0 G 07 0 0 0 27 T 08 27 0 0 0 A 09 27 0 0 0 A 10 27 0 0 0 A 11 0 25 0 2 C 12 27 0 0 0 A 13 16 4 2 5 A 14 7 4 6 10 N 15 9 11 4 3 N 16 6 9 7 5 N XX BA 27 oligonucelotides XX CC 5 cycles of SAAB (Selection And Amplification of Binding sites) with Freac-2 DNA-binding-domain/GST fusion protein and oligonucleotides containing 32 degenerate positions XX RN [1]; RE0006883. RX PUBMED: 7957066. RA Pierrou S., Hellqvist M., Samuelsson L., Enerbaeck S., Carlsson P. RT Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending RL EMBO J. 13:5002-5012 (1994). XX // AC M00291 XX ID V$FREAC3_01 XX DT 18.06.1998 (created); tme. DT 02.10.1998 (updated); tme. CO Copyright (C), Biobase GmbH. XX NA Freac-3 XX DE Fork head RElated ACtivator-3 XX BF T02471; FOXC1; Species: human, Homo sapiens. XX P0 A C G T 01 4 4 5 3 N 02 2 5 6 3 N 03 4 4 3 5 N 04 6 4 5 1 N 05 7 3 2 4 N 06 0 0 16 0 G 07 0 0 0 16 T 08 16 0 0 0 A 09 16 0 0 0 A 10 16 0 0 0 A 11 0 4 0 12 T 12 16 0 0 0 A 13 14 1 0 1 A 14 12 0 2 2 A 15 0 11 4 1 C 16 11 2 3 0 A XX BA 16 oligonucleotides XX CC 5 cycles of SAAB (Selection And Amplification of Binding sites) with Freac-3 DNA-binding-domain/GST fusion protein and oligonucleotides containing 32 degenerate positions XX RN [1]; RE0006883. RX PUBMED: 7957066. RA Pierrou S., Hellqvist M., Samuelsson L., Enerbaeck S., Carlsson P. RT Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending RL EMBO J. 13:5002-5012 (1994). XX // AC M00292 XX ID V$FREAC4_01 XX DT 18.06.1998 (created); tme. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Freac-4 XX DE Fork head RElated ACtivator-4 XX BF T02472; FOXD1; Species: human, Homo sapiens. XX P0 A C G T 01 0 14 6 0 C 02 2 6 0 12 T 03 8 0 0 12 W 04 15 0 5 0 A 05 11 0 3 6 W 06 1 0 19 0 G 07 0 0 0 20 T 08 19 1 0 0 A 09 20 0 0 0 A 10 20 0 0 0 A 11 0 20 0 0 C 12 20 0 0 0 A 13 7 2 4 7 N 14 7 3 1 9 W 15 4 4 11 1 G 16 3 6 8 3 N XX BA 20 oligonucletides XX CC 5 cycles of SAAB (Selection And Amplification of Binding sites) with Freac-4 DNA-binding-domain/GST fusion protein and oligonucleotides containing 32 degenerate positions XX RN [1]; RE0006883. RX PUBMED: 7957066. RA Pierrou S., Hellqvist M., Samuelsson L., Enerbaeck S., Carlsson P. RT Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending RL EMBO J. 13:5002-5012 (1994). XX // AC M00293 XX ID V$FREAC7_01 XX DT 18.06.1998 (created); tme. DT 02.10.1998 (updated); tme. CO Copyright (C), Biobase GmbH. XX NA Freac-7 XX DE Fork head RElated ACtivator-7 XX BF T02475; FOXL1; Species: human, Homo sapiens. XX P0 A C G T 01 7 1 4 11 W 02 10 4 2 7 N 03 6 3 6 8 N 04 13 4 4 2 A 05 4 10 2 7 N 06 21 0 2 0 A 07 0 2 0 21 T 08 22 1 0 0 A 09 23 0 0 0 A 10 23 0 0 0 A 11 0 14 0 9 Y 12 21 1 1 0 A 13 9 4 2 8 N 14 7 3 9 4 N 15 10 3 5 5 N 16 7 4 4 8 N XX BA 23 oligonucleotides XX CC 5 cycles of SAAB (Selection And Amplification of Binding sites) with Freac-7 DNA-binding-domain/GST fusion protein and oligonucleotides containing 32 degenerate positions XX RN [1]; RE0006883. RX PUBMED: 7957066. RA Pierrou S., Hellqvist M., Samuelsson L., Enerbaeck S., Carlsson P. RT Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bending RL EMBO J. 13:5002-5012 (1994). XX // AC M00294 XX ID V$HFH8_01 XX DT 19.06.1998 (created); tme. DT 01.04.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HFH-8 XX DE HNF-3/Fkh Homolog-8 XX BF T02461; FOXF1; Species: mouse, Mus musculus. XX P0 A C G T 01 13 18 11 6 N 02 16 8 11 13 N 03 13 4 10 21 N 04 0 0 0 48 T 05 7 0 41 0 G 06 0 0 0 48 T 07 0 0 0 48 T 08 0 0 0 48 T 09 39 0 9 0 A 10 0 6 0 42 T 11 20 1 11 16 N 12 5 14 1 28 T 13 18 4 22 4 R XX BA 48 ( ! high affinity ! ) binding oligonucleotides XX CC 6 cycles of SAAB (Selection And Amplification of Binding sites) with HFH-8 DNA-binding-domain/GST fusion protein and oligonucleotides containing 14 degenerate positions XX RN [1]; RE0006911. RX PUBMED: 9486531. RA Peterson R. S., Linn L., Ye H., Zhou H., Overdier D. G., Costa R. H. RT The winged helix transcriptional activator HFH-8 is expressed in the mesoderm of the primitive streak stage of mouse embryos and its cellular derivatives RL Mech. Dev. 69:53-69 (1997). XX // AC M00302 XX ID V$NFAT_Q6 XX DT 07.11.1998 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA NF-AT XX DE Nuclear factor of activated T-cells XX BF T00549; NF-AT; Species: mouse, Mus musculus. BF T00550; NF-AT1; Species: human, Homo sapiens. BF T01944; NF-AT1; Species: mouse, Mus musculus. BF T01948; NF-AT1; Species: human, Homo sapiens. BF T01945; NF-AT2; Species: human, Homo sapiens. BF T01947; NF-AT2; Species: mouse, Mus musculus. BF T02462; NF-AT3; Species: human, Homo sapiens. BF T01946; NF-AT4; Species: human, Homo sapiens. BF T01949; NF-AT4; Species: mouse, Mus musculus. XX P0 A C G T 01 6 11 2 7 N 02 13 4 5 4 A 03 5 5 8 8 N 04 12 1 2 11 W 05 2 0 23 1 G 06 0 0 26 0 G 07 26 0 0 0 A 08 25 0 1 0 A 09 25 1 0 0 A 10 15 5 2 4 A 11 9 6 2 9 N 12 5 6 6 9 N XX BA 26 compiled genomic NF-ATp/c binding sites XX RN [1]; RE0016525. RX PUBMED: 10329147. RA Kel A., Kel-Margoulis O., Babenko V., Wingender E. RT Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells RL J. Mol. Biol. 288:353-376 (1999). XX // AC M00303 XX ID F$CBF1_B XX DT 07.11.1998 (created); ewi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA CBF1 XX DE CDEI, CDE1 box, S.cerevisiae XX BF T00080; CBF1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 6.34 0.603 3.324 3.486 N 02 5.338 0.0 7.097 0.879 R 03 0.0 0.0 0.0 13.75 T 04 0.0 13.75 0.0 0.0 C 05 13.75 0.0 0.0 0.0 A 06 0.0 13.4 0.0 0.35 C 07 4.99 0.0 8.756 0.0 R 08 0.0 0.0 0.0 13.75 T 09 0.0 0.0 13.75 0.0 G 10 7.175 2.914 1.771 1.394 A XX BA 16 centromere CDEI and 6 compiled sequences; total weight of sequences 13.75 XX CC core from: 2, length: 4 XX RN [1]; RE0006468. RX PUBMED: 7891681. RA O'Connell K. F., Surdin-Kerjan Y., Baker R. E. RT Role of the Saccharomyces cerevisiae general regulatory factor CP1 in methionine biosynthetic gene transcription RL Mol. Cell. Biol. 15:1879-1888 (1995). RN [2]; RE0007019. RX PUBMED: 8379948. RA Hegemann J. H., Fleig U. N. RT The centromere of budding yeast RL BioEssays 15:451-460 (1993). XX // AC M00304 XX ID F$DDE1_B XX DT 07.11.1998 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Dde box XX DE Dde box, N. crassa XX P0 A C G T 01 2 5 2 1 C 02 1 2 7 0 G 03 0 7 2 1 C 04 0 0 0 10 T 05 1 9 0 0 C 06 7 1 0 2 A 07 0 0 10 0 G 08 1 9 0 0 C 09 1 7 0 2 C XX BA 10 conserved Dde box sequences in the promoters of r-protein and 40S rRNA genes XX CC core from: 3, length: 4 XX RN [1]; RE0007020. RX PUBMED: 9003305. RA Cujec T. P., Tyler B. M. RT Functional promoter elements common to ribosomal protein and ribosomal RNA genes in Neurospora crassa RL Mol. Gen. Genet. 253:205-216 (1996). XX // AC M00305 XX ID F$HAP1_B XX DT 07.11.1998 (created); ewi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA HAP1 XX DE HAP1, S. cerevisiae XX BF T00346; HAP1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 2 2 0 1 M 02 1 3 0 1 C 03 0 0 5 0 G 04 0 1 4 0 G 05 3 0 1 1 A 06 2 0 3 0 R 07 3 0 0 2 W 08 0 0 0 5 T 09 4 0 0 1 A 10 2 1 0 2 W 11 0 5 0 0 C 12 0 0 5 0 G 13 0 1 4 0 G 14 2 2 0 1 M XX BA 5 compiled sequences XX CC core from: 10, length: 4 XX RN [1]; RE0007021. RX PUBMED: 8628677. RA Ha N., Hellauer K., Turcotte B. RT Mutations in target DNA elements of yeast HAP1 modulate its transcriptional activity without affecting DNA binding RL Nucleic Acids Res. 24:1453-1459 (1996). XX // AC M00306 XX ID F$LEU3_B XX DT 07.11.1998 (created); ewi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA LEU3 XX DE LEU3, S. cerevisiae XX BF T00465; LEU3; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 2 2 0 2 H 02 0 0 4 2 G 03 0 6 0 0 C 04 0 6 0 0 C 05 0 0 6 0 G 06 0 0 6 0 G 07 1 0 1 4 T 08 4 1 0 1 A 09 0 6 0 0 C 10 0 6 0 0 C 11 0 0 6 0 G 12 0 2 4 0 G 13 0 3 1 2 Y 14 0 2 2 2 B XX BA 6 compiled sequences XX CC core from: 2, length: 4 XX RN [1]; RE0007022. RX PUBMED: 8887639. RA Hellauer K., Rochon M. H., Turcotte B. RT A novel DNA binding motif for yeast zinc cluster proteins: the Leu3p and Pdr3p transcriptional activators recognize everted repeats RL Mol. Cell. Biol. 16:6096-6102 (1996). XX // AC M00307 XX ID F$REB1_B XX DT 09.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA REB1 XX DE REB1, S. cerevisiae XX BF T00725; REB1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 4.75 2.94 4.89 0.93 N 02 0.0 1.54 0.0 13.66 T 03 0.93 2.39 0.0 11.13 T 04 13.61 0.0 1.59 0.0 A 05 0.0 15.2 0.0 0.0 C 06 0.0 15.2 0.0 0.0 C 07 0.0 15.2 0.0 0.0 C 08 0.0 0.0 14.5 0.7 G 09 0.77 3.78 8.09 2.55 G XX BA 19 compiled sequences, total weight of sequences: 15.21 XX CC core from: 3, length : 4 XX RN [1]; RE0000591. RX PUBMED: 2361590. RA Chasman D. I., Lue N. F., Buchman A. R., LaPointe J. W., Lorch Y., Kornberg R. D. RT A yeast protein that influences the chromatin structure of UASG and functions as a powerful auxiliary gene activator RL Genes Dev. 4:503-514 (1990). RN [2]; RE0001225. RX PUBMED: 2181283. RA Wang H., Nicholson P. R., Stillman D. J. RT Identification of a Saccharomyces cerevisiae DNA-binding protein involved in transcriptional regulation RL Mol. Cell. Biol. 10:1743-1753 (1990). XX // AC M00308 XX ID F$STRE_B XX DT 09.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA STRE XX DE MSN2/MSN4, STRE (stress response element ), S. cerevisiae XX BF T01257; MSN2; Species: yeast, Saccharomyces cerevisiae. BF T01258; MSN4; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 4.9 4.94 0.9 1.55 M 02 12.3 0.0 0.0 0.0 A 03 0.0 0.0 12.3 0.0 G 04 0.0 0.0 12.3 0.0 G 05 0.0 0.0 12.3 0.0 G 06 0.0 0.0 12.3 0.0 G 07 3.29 3.34 3.38 1.556 N XX BA 15 selected sequences, total weight of sequences: 12.31 XX CC core from: 0, length: 4 XX RN [1]; RE0007027. RX PUBMED: 8650168. RA Schmitt A. P., McEntee K. RT Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae RL Proc. Natl. Acad. Sci. USA 93:5777-82 (1996). RN [2]; RE0003123. RX PUBMED: 7523111. RA Schueller C., Brewster J. L., Alexander M. R., Gustin M. C., Ruis H. RT The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiae CTT1 gene RL EMBO J. 13:4382-4389 (1994). XX // AC M00309 XX ID V$ACAAT_B XX DT 09.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA ACAAT XX DE Avian C-type CCAAT box XX P0 A C G T 01 0.0 2.55 2.57 0.0 S 02 5.12 0.0 0.0 0.0 A 03 0.0 0.0 0.0 5.12 T 04 0.0 0.0 0.0 5.12 T 05 0.0 0.0 5.12 0.0 G 06 0.0 0.0 5.12 0.0 G 07 0.0 0.8 0.0 4.32 T 08 0.0 0.0 4.32 0.8 G 09 0.0 0.0 5.12 0.0 G XX BA 12 compiled avian retroviral LTR sequences; total weight of sequences: 5.13 XX CC core from : 1, length: 5 XX // AC M00310 XX ID V$APOLYA_B XX DT 09.11.1998 (created); abi. DT 12.07.2000 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA APOLYA XX DE Avian C-type PolyA signal XX P0 A C G T 01 6.03 0.0 0.0 0.0 A 02 5.18 0.0 0.0 0.87 A 03 0.0 0.0 0.0 6.06 T 04 6.06 0.0 0.0 0.0 A 05 6.06 0.0 0.0 0.0 A 06 6.06 0.0 0.0 0.0 A 07 0.0 4.5 0.86 0.69 C 08 0.69 0.0 4.59 0.78 G 09 0.0 5.28 0.78 0.0 C 10 0.0 6.06 0.0 0.0 C 11 0.87 0.78 0.69 0.95 N 12 4.22 0.0 0.0 1.83 A 13 0.0 0.0 0.0 6.06 T 14 0.0 0.0 0.0 6.06 T 15 0.0 0.78 1.83 3.44 K XX BA 15 compiled avian retroviral LTR sequences, total weight of sequences: 6.06 XX CC core from: 0, length: 6 XX // AC M00311 XX ID V$ATATA_B XX DT 09.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA ATATA XX DE Avian C-type TATA box XX P0 A C G T 01 0.0 1.67 2.93 0.71 S 02 0.0 0.0 0.0 5.33 T 03 5.33 0.0 0.0 0.0 A 04 0.0 1.17 0.0 4.15 T 05 2.39 0.0 0.0 2.93 W 06 0.0 0.0 0.0 5.33 T 07 5.33 0.0 0.0 0.0 A 08 5.33 0.0 0.0 0.0 A 09 0.0 0.0 5.33 0.0 G 10 0.0 3.28 0.0 2.04 Y XX BA 13 compiled avian retroviral LTR sequences; total weight of sequences: 5.33 XX CC core from: 1, length: 6 XX // AC M00312 XX ID V$BEL1_B XX DT 09.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Bel-1 XX DE Bel-1 similar region XX P0 A C G T 01 4.96 0.0 2.88 3.26 D 02 10.51 0.0 0.6 0.0 A 03 5.36 3.08 1.97 1.29 N 04 0.9 9.56 0.0 0.48 C 05 4.25 0.24 0.0 7.22 W 06 0.0 0.0 11.71 0.0 G 07 0.0 11.71 0.0 0.0 C 08 0.0 0.0 0.0 11.71 T 09 0.0 0.0 9.86 1.85 G 10 11.71 0.0 0.0 0.0 A 11 0.0 6.28 2.15 2.34 C 12 4.67 0.0 5.64 1.4 R 13 0.0 8.23 0.72 0.87 C 14 3.71 0.87 1.21 5.91 W 15 0.93 0.0 7.51 3.26 G 16 3.15 4.96 1.81 0.0 M 17 2.76 1.61 7.33 0.0 G 18 1.19 2.66 6.24 1.61 G 19 0.0 1.19 5.68 4.82 K 20 1.4 2.34 4.28 3.68 N 21 7.55 2.08 0.87 1.19 A 22 0.0 7.36 0.0 4.35 Y 23 2.16 0.0 0.86 7.48 T 24 2.36 1.78 1.61 4.75 N 25 0.0 5.09 0.93 4.81 Y 26 0.59 8.65 2.46 0.0 C 27 4.42 4.27 3.01 0.0 N 28 6.19 4.8 0.72 0.0 M XX BA 19 compiled Lentivirus LTR sequences; total weight of sequences: 11.72 XX CC core from: 5, length: 5 XX // AC M00313 XX ID V$GEN_INI2_B XX DT 09.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA GEN_INI XX DE general initiator seq. (viral+cellular) XX P0 A C G T 01 2 11 4 3 C 02 2 9 6 4 N 03 3 4 3 11 T 04 0 19 0 2 C 05 20 1 0 0 A 06 4 3 6 8 N 07 4 0 1 16 T 08 1 8 4 8 Y XX BA 21 selected viral and cellular initiator sequences XX CC core from: 3, length: 4 XX RN [1]; RE0007023. RX PUBMED: 8628688. RA Kraus R. J., Murray E. E., Wiley S. R., Zink N. M., Loritz K., Gelembiuk G. W., Mertz J. E. RT Experimentally determined weight matrix definition of the initiator and TBP binding site elements of promoters RL Nucleic Acids Res. 24:1531-1539 (1996). XX // AC M00314 XX ID V$GEN_INI3_B XX DT 09.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA GEN_INI XX DE general initiator seq.(viral+cellular) XX P0 A C G T 01 2 10 4 3 C 02 2 9 6 3 N 03 3 4 3 10 N 04 0 18 0 2 C 05 20 0 0 0 A 06 4 2 6 8 N 07 4 0 1 15 T 08 1 8 4 7 N XX BA 20 selected viral and cellular initiator sequences XX CC core from: 3, length: 4 XX RN [1]; RE0007023. RX PUBMED: 8628688. RA Kraus R. J., Murray E. E., Wiley S. R., Zink N. M., Loritz K., Gelembiuk G. W., Mertz J. E. RT Experimentally determined weight matrix definition of the initiator and TBP binding site elements of promoters RL Nucleic Acids Res. 24:1531-1539 (1996). XX // AC M00315 XX ID V$GEN_INI_B XX DT 09.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA GEN_INI XX DE general initiator seq. (viral+cellular) XX P0 A C G T 01 3 12 4 3 C 02 2 10 7 4 N 03 3 5 3 12 T 04 0 20 1 2 C 05 21 1 1 0 A 06 4 3 7 8 N 07 4 0 1 17 T 08 1 9 4 8 Y XX BA 23 selected viral and cellular initiator sequences XX CC core from: 3, length: 4 XX RN [1]; RE0007023. RX PUBMED: 8628688. RA Kraus R. J., Murray E. E., Wiley S. R., Zink N. M., Loritz K., Gelembiuk G. W., Mertz J. E. RT Experimentally determined weight matrix definition of the initiator and TBP binding site elements of promoters RL Nucleic Acids Res. 24:1531-1539 (1996). XX // AC M00317 XX ID V$LDSPOLYA_B XX DT 10.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Poly A XX DE Lentiviral Poly A downstream element XX P0 A C G T 01 5 5 2 4 N 02 3 1 7 3 N 03 5 6 1 4 N 04 0 7 8 1 S 05 0 0 0 16 T 06 0 0 16 0 G 07 2 0 3 11 T 08 0 3 9 4 G 09 0 1 0 15 T 10 5 0 4 7 D 11 1 9 1 5 Y 12 1 6 0 9 Y 13 4 9 2 1 C 14 8 0 1 7 W 15 0 3 2 11 T 16 1 7 3 5 N XX BA 16 compiled Lentivirus LTR sequences ( 8 primate and 8 nonprimate LTRs) XX CC core from: 3, length: 4 XX // AC M00318 XX ID V$LPOLYA_B XX DT 10.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Lentiviral Poly A XX DE Lentiviral Poly A signal XX P0 A C G T 01 1.85 4.58 0.0 2.72 Y 02 10.71 0.0 0.0 0.0 A 03 10.71 0.0 0.0 0.0 A 04 0.0 0.0 0.0 10.71 T 05 10.71 0.0 0.0 0.0 A 06 10.71 0.0 0.0 0.0 A 07 10.71 0.0 0.0 0.0 A 08 0.0 0.52 7.06 2.2 G XX BA 16 compiled Lentivirus LTR sequences; total weight of sequences: 10.71 XX CC core from: 3, length: 4 XX // AC M00319 XX ID V$MEF3_B XX DT 10.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA MEF-3 XX DE MEF-3 XX P0 A C G T 01 0 0 3 2 K 02 0 1 4 0 G 03 0 2 3 0 S 04 0 0 0 5 T 05 0 5 0 0 C 06 5 0 0 0 A 07 0 0 5 0 G 08 0 0 5 0 G 09 0 1 0 4 T 10 0 0 0 5 T 11 2 0 0 3 W 12 0 4 0 1 C 13 2 1 1 1 N XX BA 5 compiled sequences XX CC core from: 3, length: 4 XX RN [1]; RE0007028. RX PUBMED: 8114720. RA Parmacek M. S., Ip H. S., Jung F., Shen T., Martin J. F., Vora A. J., Olson E.N., Leiden J. M. RT A novel myogenic regulatory circuit controls slow/cardiac troponin C gene transcription in skeletal muscle RL Mol. Cell. Biol. 14:1870-1885 (1994). XX // AC M00320 XX ID V$MTATA_B XX DT 11.11.1998 (created); abi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Muscle TATA box XX DE Muscle TATA box XX P0 A C G T 01 1 6 3 2 C 02 0 4 4 4 B 03 3 5 2 2 N 04 0 2 0 10 T 05 8 0 0 4 A 06 0 0 0 12 T 07 12 0 0 0 A 08 10 0 0 2 A 09 11 1 0 0 A 10 4 1 3 4 N 11 2 8 0 2 C 12 1 4 5 2 N 13 0 6 3 3 C 14 1 4 5 2 N 15 4 3 5 0 V 16 0 6 4 2 S 17 0 4 6 2 S XX BA 12 compiled musle actin promoter sequences XX CC core from: 5, length: 4 XX // AC M00321 XX ID V$MUSCLE_INI_B XX DT 11.11.1998 (created); abi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Muscle initiator XX DE Muscle initiator XX P0 A C G T 01 4 3 4 5 N 02 2 6 5 3 N 03 3 7 5 1 N 04 3 8 4 1 C 05 2 4 8 2 N 06 4 8 3 1 C 07 2 9 2 2 C 08 5 4 6 1 N 09 4 8 2 2 C 10 0 16 0 0 C 11 16 0 0 0 A 12 1 11 1 3 C 13 1 8 3 4 C 14 2 10 4 0 C 15 7 8 0 1 M 16 3 3 9 1 G 17 1 6 8 1 S 18 5 5 4 2 N 19 2 3 11 0 G 20 1 8 3 4 C 21 3 8 2 3 C XX BA 16 compiled muscle promoter sequences (including 10 actin promoter sequences) XX CC core from: 9, length: 14 XX // AC M00322 XX ID V$MYCMAX_B XX DT 11.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA c-Myc:Max XX DE c-Myc:Max binding sites XX BF T00140; c-Myc; Species: human, Homo sapiens. BF T00141; c-Myc; Species: chick, Gallus gallus. BF T00142; c-Myc; Species: rat, Rattus norvegicus. BF T00143; c-Myc; Species: mouse, Mus musculus. BF T00489; Max1; Species: human, Homo sapiens. BF T01567; Max2; Species: human, Homo sapiens. XX P0 A C G T 01 3 3 11 1 G 02 0 12 4 2 C 03 0 18 0 0 C 04 13 0 4 1 A 05 0 11 0 7 Y 06 1 0 17 0 G 07 1 10 0 7 Y 08 0 0 18 0 G 09 2 9 5 1 S 10 2 5 6 4 N XX BA 18 compiled sequences XX CC core from: 2, length: 4 XX RN [1]; RE0007029. RX PUBMED: 9175477. RA Grandori C. RT Myc target genes RL Trends Biochem. Sci. 22:177-181 (1997). XX // AC M00323 XX ID V$MINI19_B XX DT 11.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Muscle initiator sequences-19 XX DE Muscle initiator sequences-19 XX P0 A C G T 01 1 2 2 2 N 02 1 2 2 2 N 03 2 3 1 1 N 04 2 3 2 1 N 05 0 2 5 1 G 06 2 3 3 0 V 07 1 6 1 0 C 08 2 3 2 1 N 09 0 5 1 2 C 10 0 8 0 0 C 11 8 0 0 0 A 12 1 4 0 3 Y 13 1 2 3 2 N 14 0 6 2 0 C 15 5 3 0 0 M 16 3 0 5 0 R 17 1 3 4 0 S 18 1 2 3 2 N 19 2 1 5 0 G 20 0 4 3 1 S 21 3 4 1 0 M XX BA 8 compiled muscle promoter sequences ( actin, acetylcholin, myosin, myf4) XX CC core from: 8, length: 4 XX // AC M00324 XX ID V$MINI20_B XX DT 11.11.1998 (created); abi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Muscle initiator sequence-20 XX DE Muscle initiator sequence-20 XX P0 A C G T 01 1 2 2 2 N 02 1 2 2 2 N 03 2 3 1 1 N 04 2 3 1 1 N 05 0 1 5 1 G 06 2 2 3 0 V 07 0 6 1 0 C 08 2 3 1 1 N 09 0 4 1 2 C 10 0 7 0 0 C 11 7 0 0 0 A 12 1 3 0 3 Y 13 1 1 3 2 N 14 0 5 2 0 C 15 4 3 0 0 M 16 3 0 4 0 R 17 0 3 4 0 S 18 1 2 2 2 N 19 2 0 5 0 G 20 0 3 3 1 S 21 3 3 1 0 M XX BA 7 compiled muscle promoter sequences ( actin, acetylcholine, myosin, myf4) XX CC core from: 8, length: 4 XX // AC M00325 XX ID V$NRSE_B XX DT 11.11.1998 (created); abi. DT 22.06.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA neural-restr.-silencer-element XX DE neural-restrictive-silencer-element XX BF T01974; NRSF form 1; Species: human, Homo sapiens. BF T01973; NRSF form 2; Species: human, Homo sapiens. BF T05934; REST; Species: mouse, Mus musculus. XX P0 A C G T 01 1 1 0 4 T 02 0 0 1 5 T 03 0 4 0 2 Y 04 6 0 0 0 A 05 0 0 6 0 G 06 1 4 0 1 C 07 4 0 0 2 W 08 0 5 0 1 C 09 0 6 0 0 C 10 2 0 2 2 D 11 0 6 0 0 C 12 0 0 6 0 G 13 0 0 6 0 G 14 5 0 0 1 A 15 0 2 4 0 S 16 4 1 0 0 A 17 0 0 5 1 G 18 1 3 0 2 Y 19 2 0 4 0 R 20 0 5 1 0 C 21 0 5 0 0 C XX BA 6 sequences from neuron specific genes XX CC core from: 10, length: 4 XX RN [1]; RE0007030. RX PUBMED: 7984427. RA Pathak B. G., Neumann J. C., Croyle M. L., Lingrel J. B. RT The presence of both negative and positive elements in the 5'-flanking sequence of the rat Na,K-ATPase alpha 3 subunit gene are required for brain expression in transgenic mice RL Nucleic Acids Res. 22:4748-4755 (1994). XX // AC M00326 XX ID V$PAX1_B XX DT 11.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Pax-1 XX DE Pax-1 binding sites XX BF T02110; Pax-1; Species: chick, Gallus gallus. BF T00398; Pax-1; Species: human, Homo sapiens. BF T00677; Pax-1; Species: mouse, Mus musculus. XX P0 A C G T 01 0 5 0 0 C 02 0 5 0 0 C 03 0 0 5 0 G 04 0 0 0 5 T 05 0 0 0 5 T 06 1 4 0 0 C 07 0 5 0 0 C 08 0 0 5 0 G 09 0 4 1 0 C 10 0 0 0 5 T 11 0 5 0 0 C 12 0 0 0 5 T 13 5 0 0 0 A 14 0 0 5 0 G 15 5 0 0 0 A 16 0 0 0 5 T 17 5 0 0 0 A 18 0 0 0 5 T XX BA 5 selected oligonucleotide sequences XX CC core from: 0, length: 4 XX RN [1]; RE0002787. RX PUBMED: 1889089. RA Chalepakis G., Fritsch R., Fickenscher H., Deutsch U., Goulding M., Gruss P. RT The molecular basis of the undulated/Pax-1 mutation RL Cell 66:873-884 (1991). XX // AC M00327 XX ID V$PAX3_B XX DT 11.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Pax-3 XX DE Pax-3 binding sites XX BF T00680; Pax-3; Species: mouse, Mus musculus. BF T00679; Pax-3; Species: human, Homo sapiens. XX P0 A C G T 01 21 5 10 15 N 02 17 15 9 10 N 03 23 13 10 5 N 04 13 10 10 18 N 05 12 8 11 20 N 06 10 13 13 15 N 07 4 28 9 10 C 08 3 2 41 5 G 09 6 2 0 43 T 10 1 38 11 1 C 11 44 3 1 3 A 12 1 45 0 5 C 13 0 0 46 5 G 14 1 21 25 4 S 15 10 3 0 38 T 16 10 15 1 25 Y 17 15 10 15 11 N 18 15 14 8 14 N 19 15 5 21 10 N 20 13 10 15 13 N 21 16 8 9 18 N XX BA 51 sequences from oligonucleotide selection XX CC core from: 9, length: 4 XX RN [1]; RE0007031. RX PUBMED: 8633043. RA Epstein J. A., Shapiro D. N., Cheng J., Lam P. Y. P., Maas R. L. RT Pax3 modulates expression of the c-Met receptor during limb muscle development. RL Proc. Natl. Acad. Sci. USA 93:4213-4218 (1996). XX // AC M00328 XX ID V$PAX8_B XX DT 11.11.1998 (created); abi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Pax-8 XX DE Pax-8 binding sites XX BF T01828; Pax-8; Species: mouse, Mus musculus. BF T01829; Pax-8; Species: rat, Rattus norvegicus. BF T02898; Pax-8; Species: human, Homo sapiens. BF T03220; Pax-8; Species: Japanese pufferfish, Fugu rubripes. BF T03222; Pax-8; Species: zebra fish, Brachydanio rerio. XX P0 A C G T 01 9 2 4 8 N 02 2 12 6 3 C 03 11 5 2 5 N 04 3 6 8 6 N 05 5 5 1 12 T 06 6 8 5 4 N 07 9 3 3 8 N 08 5 5 1 12 T 09 1 2 17 3 G 10 5 14 3 1 C 11 8 1 12 2 R 12 1 1 2 19 T 13 2 1 17 3 G 14 13 2 6 2 A 15 7 3 8 5 N 16 6 5 4 8 N 17 5 5 3 10 N 18 7 7 6 3 N XX BA 23 selected sequences with a relative binding activity >= 1.0 XX BS TGACTCATGCGTAGAGAT; R12656; 1; 18;; p. BS TCACTGGTGCATTGTTCG; R12657; 1; 18;; p. BS GTTGAATAACGTGGAGTC; R12658; 1; 18;; p. BS AGCCCAGTGCGTCTGCTC; R12659; 1; 18;; p. BS TCAGTTAGTCATTAGAAC; R12661; 1; 18;; p. BS CTATTGAAGCGTGAAGTT; R12665; 1; 18;; p. BS TGACTCAAGCATGAGAGG; R12666; 1; 18;; p. BS GCAACACTGCGTAAGACG; R12667; 1; 18;; p. BS ACAGTTCTGCGTGAATTC; R12668; 1; 18;; p. BS ACGGTCATTCGAGTAGAA; R12670; 1; 18;; p. BS ACCGTATAGATTGCTATA; R12671; 1; 18;; p. BS ACTGACTCGGGTGGGCAG; R12673; 1; 18;; p. BS TTCTACTCGAATGACCGT; R12674; 1; 18;; p. BS AGTCCTCTTCATGAGTCA; R12675; 1; 18;; p. BS TCAATCGAGAGTGATTAC; R12676; 1; 18;; p. BS GACTCCATGGTTGCATTG; R12677; 1; 18;; p. BS TCTGCAATGAGTGGTTTA; R12679; 1; 18;; p. BS CCATGGTTGGATTACCTC; R12680; 1; 18;; p. BS ACATTAATGCCCGAGTCA; R12681; 1; 18;; p. BS ACTGACTCGAGTGGAATC; R12682; 1; 18;; p. BS GGCCATTCCCAGGAGTCA; R12683; 1; 18;; p. BS AGATTGATCCATGACATG; R12685; 1; 18;; p. BS TAGATGTCGTGGGATCGA; R12687; 1; 18;; p. XX CC core from: 9, length: 4 XX RN [1]; RE0007032. RX PUBMED: 8615801. RA Pellizzari L., Fabbro D., Longigro R., Dilauro R., Damante G. RT A network of specific minor-groove contacts is a common characteristic of paired-domain-DNA interactions RL Biochem. J. 315:363-367 (1996). XX // AC M00329 XX ID V$PAX9_B XX DT 11.11.1998 (created); abi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Pax-9 XX DE zebrafish Pax-9 binding sites XX BF T03593; Pax-9a; Species: zebra fish, Brachydanio rerio. BF T03594; Pax-9b; Species: zebra fish, Brachydanio rerio. XX P0 A C G T 01 2 0 3 0 R 02 3 0 0 2 W 03 0 1 2 2 K 04 4 0 1 0 A 05 0 3 1 1 C 06 0 2 3 0 S 07 0 4 0 1 C 08 5 0 0 0 A 09 1 1 2 1 N 10 1 2 1 1 N 11 0 0 5 0 G 12 2 1 1 1 N 13 1 0 2 2 K 14 0 0 5 0 G 15 2 2 1 0 M 16 1 0 4 0 G 17 1 1 0 3 T 18 1 0 4 0 G 19 2 1 2 0 R 20 1 3 0 1 C 21 0 3 2 0 S 22 2 0 1 1 A 23 0 3 1 0 C 24 1 2 0 1 C XX CC core from: 4, length: 4 XX // AC M00331 XX ID V$TAACC_B XX DT 11.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Lentiviral TATA XX DE Lentiviral TATA upstream element XX P0 A C G T 01 3.99 4.07 0.87 1.8 M 02 8.75 0.0 1.93 0.0 A 03 2.6 1.81 5.4 0.91 G 04 3.32 0.0 0.0 0.91 A 05 5.4 1.44 3.18 0.69 R 06 7.41 3.32 0.0 0.0 A 07 3.28 3.31 4.14 0.0 V 08 4.65 2.27 0.0 3.81 W 09 8.42 0.0 0.0 1.61 A 10 0.83 0.0 7.63 0.0 G 11 0.0 2.23 3.12 3.32 B 12 1.79 5.62 2.4 0.91 C 13 1.5 0.0 0.0 9.24 T 14 10.11 0.0 0.62 0.0 A 15 10.38 0.0 0.35 0.0 A 16 0.0 10.74 0.0 0.0 C 17 0.0 10.74 0.0 0.0 C 18 1.62 0.91 8.2 0.0 G 19 0.91 9.82 0.0 0.0 C 20 10.74 0.0 0.0 0.0 A 21 10.11 0.0 0.62 0.0 A 22 3.45 0.0 7.29 0.0 G 23 4.51 2.9 0.91 2.4 N XX BA 17 compiled Lentivirus LTR sequences; total weight of sequences: 10.74 XX CC core from: 11, length: 6 XX // AC M00332 XX ID V$WHN_B XX DT 11.11.1998 (created); abi. DT 10.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Whn XX DE winged-helix factor nude XX BF T01835; FOXN1; Species: mouse, Mus musculus. BF T02525; FOXN1; Species: human, Homo sapiens. XX P0 A C G T 01 59 10 10 21 A 02 40 16 32 12 N 03 12 32 28 28 N 04 9 19 66 6 G 05 100 0 0 0 A 06 0 100 0 0 C 07 0 0 100 0 G 08 0 100 0 0 C 09 8 19 18 55 T 10 36 13 13 38 N 11 15 17 23 45 N XX CC core from: 4, length: 4 XX RN [1]; RE0007033. RX PUBMED: 9108066. RA Schlake T., Schorpp M., Nehls M., Boehm T. RT The nude gene encodes organisms that lack an anticipatory immune system RL Proc. Natl. Acad. Sci. USA 94:3842-3847 (1997). XX // AC M00333 XX ID V$ZF5_B XX DT 11.11.1998 (created); abi. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA ZF5 XX DE ZF5 binding sites XX BF T02349; ZF5; Species: mouse, Mus musculus. XX P0 A C G T 01 3 6 3 5 N 02 6 1 9 1 R 03 3 2 8 4 N 04 5 2 10 0 G 05 3 4 8 2 N 06 5 1 10 1 G 07 0 14 0 3 C 08 2 0 12 3 G 09 1 11 1 4 C 10 2 2 11 2 G 11 0 14 1 2 C 12 6 0 1 10 W 13 5 2 3 7 N XX BA 17 selected sequences (with higher binding affinity out of 29 selected sequences in total) XX BS CATAAGCGCGCTA; R12596; 7; 13;; p. BS GGAGAGCGCGCAT; R12597; 7; 13;; p. BS TAGGCGTACTGTA; R12598; 7; 13;; p. BS AGGCGGCACTCTA; R12599; 7; 13;; p. BS CAGCGACTCGCTG; R12600; 7; 13;; p. BS CAGGGTCGCGCTT; R12601; 7; 13;; p. BS CTCGCGCGTGCAA; R12602; 7; 13;; p. BS TGAGGACGTGCGT; R12603; 7; 13;; p. BS TGCACATGCACTT; R12604; 7; 13;; p. BS AGGGGGCGAGCAT; R12605; 7; 13;; p. BS TCTGCACGCGTAC; R12606; 7; 13;; p. BS CGTGTGCTGGCTA; R12607; 7; 13;; p. BS TGTAGGTGTCCTG; R12608; 7; 13;; p. BS GAGGAGCGTCCAT; R12609; 7; 13;; p. BS GGAATGCTCGTTC; R12610; 7; 13;; p. BS CAGGGCCGCGCAT; R12611; 7; 13;; p. BS AGGAGACGCACTG; R12612; 7; 13;; p. XX CC core from: 5, length: 4; sequences selected from random oligonucleotides after 6 rounds of selection and amplification [1] XX RN [1]; RE0007034. RX PUBMED: 9092617. RA Kaplan J., Calame K. RT The ZiN/POZ domain of ZF5 is required for both transcriptional activation and repression RL Nucleic Acids Res. 25:1108-1116 (1997). XX // AC M00334 XX ID V$DTYPEPA_B XX DT 11.11.1998 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA D-Type LTRs XX DE poly A signal of D-type LTRs XX P0 A C G T 01 3 0 1 0 A 02 0 4 0 0 C 03 0 4 0 0 C 04 4 0 0 0 A 05 0 0 0 4 T 06 0 0 0 4 T 07 4 0 0 0 A 08 4 0 0 0 A 09 4 0 0 0 A 10 0 3 0 1 C XX BA 4 compiled D-type LTR sequences (SRV-1, SRV-2, MMPV) XX CC core from: 1, length: 4 XX // AC M00337 XX ID F$GCR1_B XX DT 03.02.1999 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA GCR1 XX DE GCR1, S.cerevisiae XX BF T00322; GCR1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 0.0 0.86 0.86 2.72 T 02 2.59 0.0 5.24 0.0 G 03 0.86 0.0 6.11 0.86 G 04 0.0 7.84 0.0 0.0 C 05 2.66 0.0 0.0 5.17 W 06 0.0 0.0 0.0 7.84 T 07 0.0 7.84 0.0 0.0 C 08 0.0 7.84 0.0 0.0 C 09 5.24 0.0 0.0 1.72 A 10 0.0 4.25 0.96 1.72 C 11 1.72 0.0 0.89 5.22 T 12 4.25 0.0 0.0 3.58 W 13 0.86 0.0 0.83 5.31 T 14 0.83 0.0 1.69 5.31 T XX BA 9 compiled binding sequences; total weight of sequences: 7.84 XX CC core from: 3, length: 4 XX // AC M00338 XX ID V$ATF_B XX DT 03.02.1999 (created); abi. DT 12.07.2000 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ATF XX DE ATF binding site XX BF T00051; ATF; Species: human, Homo sapiens. XX P0 A C G T 01 2.47 2.48 4.73 3.16 N 02 0.0 0.0 0.0 12.86 T 03 0.0 0.0 12.86 0.0 G 04 12.86 0.0 0.0 0.0 A 05 0.0 12.86 0.0 0.0 C 06 0.0 0.0 12.86 0.0 G 07 0.86 0.0 0.0 11.99 T 08 1.76 7.29 0.98 1.46 C 09 7.18 0.0 0.0 3.24 A 10 4.23 1.78 3.61 3.23 N 11 1.63 5.68 0.96 4.57 Y 12 0.67 4.84 6.67 0.67 S XX BA 17 compiled binding sequences; total weight of equences: 12.86 XX CC core from: 1, length: 4 XX // AC M00339 XX ID V$ETS1_B XX DT 03.02.1999 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA c-Ets-1 XX DE c-ETS-1 binding site XX BF T00112; c-Ets-1; Species: human, Homo sapiens. BF T00111; c-Ets-1; Species: mouse, Mus musculus. XX P0 A C G T 01 4.27 2.43 3.96 0.0 R 02 0.57 8.22 3.8 0.0 C 03 14.67 0.0 0.0 0.0 A 04 0.0 0.0 14.67 0.0 G 05 0.0 0.0 14.67 0.0 G 06 14.67 0.0 0.0 0.0 A 07 10.56 0.0 0.0 4.1 A 08 3.29 0.87 10.5 0.0 G 09 0.0 2.32 1.97 10.37 T 10 3.39 1.65 7.95 1.66 G 11 4.73 3.89 4.03 2.01 N 12 0.7 3.55 4.61 5.79 N 13 2.29 0.57 3.03 8.76 T 14 2.57 3.89 6.23 1.96 N 15 3.05 5.91 5.12 0.57 S XX BA 21 compiled binding sequences; total weight of sequences: 14.67 XX CC core from: 3, length: 4 XX // AC M00340 XX ID V$ETS2_B XX DT 04.02.1999 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA c-Ets-2 XX DE c-Ets-2 binding sites XX BF T00114; c-Ets-1 54; Species: chick, Gallus gallus. BF T00113; c-Ets-2; Species: human, Homo sapiens. BF T01397; c-Ets-2; Species: mouse, Mus musculus. XX P0 A C G T 01 1.76 0.0 3.21 2.55 K 02 4.14 0.82 2.56 0.0 R 03 0.0 5.8 1.73 0.0 C 04 7.53 0.0 0.0 0.0 A 05 0.0 0.0 7.53 0.0 G 06 0.0 0.0 7.53 0.0 G 07 7.53 0.0 0.0 0.0 A 08 6.62 0.0 0.0 0.91 A 09 2.52 0.0 5.01 0.0 R 10 0.0 2.33 0.0 5.2 T 11 3.36 1.7 2.46 0.0 R 12 2.58 2.38 0.88 1.68 N 13 0.0 1.79 2.58 3.15 K 14 1.67 0.94 0.0 4.92 T XX BA 9 compiled binding sequences; total weight of sequences: 7.54 XX CC core from: 4, length: 4 XX // AC M00341 XX ID V$GABP_B XX DT 04.02.1999 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA GABP XX DE GA binding protein XX BF T01402; GABP-alpha; Species: mouse, Mus musculus. BF T01390; GABP-alpha; Species: human, Homo sapiens. BF T00268; GABP-alpha:GABP-beta; Species: human, Homo sapiens. BF T00298; GABP-alpha:GABP-beta; Species: mouse, Mus musculus. BF T01391; GABP-beta1; Species: human, Homo sapiens. BF T01392; GABP-beta2; Species: human, Homo sapiens. XX P0 A C G T 01 3.97 2.49 2.71 0.0 V 02 0.0 7.24 1.94 0.0 C 03 1.21 6.66 1.3 0.0 C 04 0.0 0.0 9.18 0.0 G 05 0.0 0.0 9.18 0.0 G 06 9.18 0.0 0.0 0.0 A 07 9.18 0.0 0.0 0.0 A 08 0.0 0.0 9.18 0.0 G 09 1.5 2.2 0.93 4.54 N 10 0.0 0.0 8.25 0.93 G 11 0.0 5.99 2.1 1.08 C 12 4.41 0.83 2.97 0.96 R XX BA 12 compiled binding sequences; total weight of sequences: 9.19 XX CC core from:3, length: 4 XX // AC M00342 XX ID V$OCT1_B XX DT 04.02.1999 (created); abi. DT 05.07.1999 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX DE Octamer binding factor 1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. BF T01862; POU2F1b; Species: mouse, Mus musculus. BF T01863; POU2F1c; Species: mouse, Mus musculus. XX P0 A C G T 01 4.89 5.96 0.67 13.24 T 02 27.4 0.0 0.0 0.0 A 03 0.0 0.0 0.0 27.4 T 04 0.0 0.0 27.4 0.0 G 05 0.81 26.59 0.0 0.0 C 06 26.59 0.0 0.81 0.0 A 07 27.4 0.0 0.0 0.0 A 08 26.98 0.0 0.41 0.0 A 09 2.21 1.01 2.42 21.45 T 10 6.36 8.58 5.36 5.08 N XX BA 56 compiled binding sequences; total weight of sequences: 27.41 XX CC core from: 1, length: 4 XX // AC M00343 XX ID P$RAV1_01 XX DT 15.02.1999 (created); ewi. CO Copyright (C), Biobase GmbH. XX NA RAV1 XX DE 5'-part of bipartite RAV1 binding site, interacting with AP2 domain XX BF T02637; RAV1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 14 17 12 6 N 02 16 11 10 14 N 03 7 14 35 1 G 04 0 62 0 0 C 05 47 12 9 0 A 06 62 4 3 0 A 07 0 69 0 0 C 08 69 0 0 0 A 09 9 7 32 21 K 10 41 4 4 20 A 11 34 6 10 19 W 12 27 9 17 16 N XX BA 69 selected binding sequences with the 3'-part (P$RAV1_02) in a 2-8 bp distance (no of intervening base pairs) XX CC binding site selection assay (BSSA) with bacterially expressed RAV1 from a pool of random 30-mers over 6 rounds of selection and PCR amplification XX RN [1]; RE0013317. RX PUBMED: 9862967. RA Kagaya Y., Ohmiya K., Hattori T. RT RAV1, a Novel DNA-Binding Protein, Binds to Bipartite Recognition Sequence through Two Distinct DNA-Binding Domains Uniquely Found in Higher Plants RL Nucleic Acids Res. 27:470-478 (1999). XX // AC M00344 XX ID P$RAV1_02 XX DT 15.02.1999 (created); ewi. CO Copyright (C), Biobase GmbH. XX NA RAV1 XX DE 3'-part of bipartite RAV1 binding site, interacting with AP2 domain XX BF T02637; RAV1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 22 12 10 18 N 02 13 15 8 28 N 03 8 49 1 7 C 04 40 6 8 11 A 05 1 56 3 5 C 06 0 65 0 0 C 07 0 0 0 65 T 08 0 0 58 0 G 09 24 7 19 5 R 10 12 15 18 9 N 11 12 14 16 10 N 12 8 20 5 13 N XX BA 65 selected binding sequences with the 5'-part (P$RAV1_01) in a 2-8 bp distance (no of intervening base pairs) XX CC binding site selection assay (BSSA) with bacterially expressed RAV1 from a pool of random 30-mers over 6 rounds of selection and PCR amplification XX RN [1]; RE0013317. RX PUBMED: 9862967. RA Kagaya Y., Ohmiya K., Hattori T. RT RAV1, a Novel DNA-Binding Protein, Binds to Bipartite Recognition Sequence through Two Distinct DNA-Binding Domains Uniquely Found in Higher Plants RL Nucleic Acids Res. 27:470-478 (1999). XX // AC M00345 XX ID P$GAMYB_01 XX DT 26.02.1999 (created); rhe. DT 29.10.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA GAmyb XX DE GA-regulated myb gene from barley XX BF T02679; GAMYB; Species: barley, Hordeum vulgare. XX P0 A C G T 01 0 16 0 9 Y 02 25 0 0 0 A 03 25 0 0 0 A 04 0 25 0 0 C 05 3 13 7 2 S 06 5 3 17 0 G 07 10 10 1 4 M 08 5 17 2 0 C XX BA 25 selected binding sequences XX BS TAACCGCG; R11351; 7; 8;; p. BS CAACCACC; R11352; 14; 8;; p. BS CAACGCGA; R11353; 22; 8;; p. BS TAACCGCC; R11354; 20; 8;; p. BS CAACCGCC; R11355; 1; 8;; p. BS CAACCGAC; R11356; 23; 8;; p. BS TAACACAA; R11357; 10; 8;; p. BS CAACCGAC; R11358; 23; 8;; p. BS TAACGACA; R11359; 14; 8;; p. BS TAACCGCC; R11360; 16; 8;; p. BS CAACCGAC; R11361; 23; 8;; p. BS TAACCACC; R11362; 8; 8;; p. BS CAACCGAA; R11363; 13; 8;; p. BS CAACGGAA; R11364; 4; 8;; p. BS CAACGCCG; R11365; 21; 8;; p. BS CAACAAAC; R11366; 6; 8;; p. BS CAACCGAC; R11367; 23; 8;; p. BS TAACTACC; R11368; 17; 8;; p. BS TAACAGAC; R11369; 7; 8;; p. BS CAACCGA; R11370; 23; 8; 30; p. BS TAACCGTC; R11371; 22; 8;; p. BS CAACGGCC; R11372; 19; 8;; p. BS CAACGGTC; R11373; 22; 8;; p. BS CAACGGTC; R11374; 22; 8;; p. BS CAACTGTC; R11375; 5; 8;; p. XX CC 5 rounds of selection from random 26-mers bound to bacterially expressed protein XX RN [1]; RE0013393. RX PUBMED: 10069063. RA Gubler F., Raventos D., Keys M., Watts R., Mundy J., Jacobsen J. V. RT Target genes and regulatory domains of the GAMYB transcriptional activator in cereal aleurone RL Plant J. 17:1-9 (1999). XX // AC M00346 XX ID V$GATA1_05 XX DT 08.04.1999 (created); vma. DT 08.04.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GATA-1 XX DE GATA-binding factor 1 XX BF T00305; GATA-1; Species: mouse, Mus musculus. BF T00267; GATA-1; Species: chick, Gallus gallus. BF T00306; GATA-1; Species: human, Homo sapiens. BF T00304; GATA-1A; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 3 2 4 1 N 02 2 6 1 1 C 03 4 2 0 4 W 04 0 0 10 0 G 05 10 0 0 0 A 06 0 0 0 10 T 07 10 0 0 0 A 08 10 0 0 0 A 09 2 6 2 0 C 10 6 2 1 1 A XX BA 10 selected binding sequences XX CC GST-cGATA-1 fusion protein was used for binding site selection from a pool of random oligonucleotides containing a core of three fixed nucleotides (NNNGATNNNN) XX RN [1]; RE0013392. RX PUBMED: 8321208. RA Ko L. J., Engel J. D. RT DNA-binding specificities of the GATA transcription factor family. RL Mol. Cell. Biol. 13:4011-4022 (1993). XX // AC M00347 XX ID V$GATA1_06 XX DT 08.04.1999 (created); vma. DT 08.04.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GATA-1 XX DE GATA-binding factor 1 XX BF T00267; GATA-1; Species: chick, Gallus gallus. XX P0 A C G T 01 7 6 1 1 M 02 2 4 3 6 N 03 11 2 0 2 A 04 0 0 15 0 G 05 15 0 0 0 A 06 0 0 0 15 T 07 14 1 0 0 A 08 15 0 0 0 A 09 3 4 7 1 N 10 9 1 5 0 R XX BA 15 selected binding sequences XX CC GST-cGATA-1 fusion protein was used for binding site selection from a pool of random oligonucleotides containing a core of three fixed nucleotides (NNNGATNNNN) XX RN [1]; RE0013392. RX PUBMED: 8321208. RA Ko L. J., Engel J. D. RT DNA-binding specificities of the GATA transcription factor family. RL Mol. Cell. Biol. 13:4011-4022 (1993). XX // AC M00348 XX ID V$GATA2_02 XX DT 08.04.1999 (created); vma. DT 08.04.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GATA-2 XX DE GATA-binding factor 2 XX BF T00307; GATA-2; Species: chick, Gallus gallus. BF T00567; GATA-2; Species: chick, Gallus gallus. XX P0 A C G T 01 15 5 7 4 N 02 7 7 11 6 N 03 17 5 0 9 W 04 0 0 31 0 G 05 31 0 0 0 A 06 0 0 0 31 T 07 30 1 0 0 A 08 29 0 0 2 A 09 4 9 17 1 S 10 17 3 7 4 A XX BA 31 selected binding sequences XX CC GST-cGATA-2 fusion protein was used for binding site selection from a pool of random oligonucleotides containing a core of three fixed nucleotides (NNNGATNNNN) XX RN [1]; RE0013392. RX PUBMED: 8321208. RA Ko L. J., Engel J. D. RT DNA-binding specificities of the GATA transcription factor family. RL Mol. Cell. Biol. 13:4011-4022 (1993). XX // AC M00349 XX ID V$GATA2_03 XX DT 08.04.1999 (created); vma. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA GATA-2 XX DE GATA-binding factor 2 XX BF T00307; GATA-2; Species: chick, Gallus gallus. BF T00567; GATA-2; Species: chick, Gallus gallus. XX P0 A C G T 01 9 4 2 3 A 02 3 6 9 0 S 03 12 3 0 3 A 04 0 0 18 0 G 05 18 0 0 0 A 06 0 0 0 18 T 07 14 4 0 0 A 08 12 0 2 4 A 09 2 4 8 4 N 10 18 0 0 0 A XX BA 18 selected binding sequences XX CC GST-cGATA-2 fusion protein was used for binding site selection from a pool of random oligonucleotides containing a core of three fixed nucleotides (NNNGATNNNN) XX RN [1]; RE0013392. RX PUBMED: 8321208. RA Ko L. J., Engel J. D. RT DNA-binding specificities of the GATA transcription factor family. RL Mol. Cell. Biol. 13:4011-4022 (1993). XX // AC M00350 XX ID V$GATA3_02 XX DT 08.04.1999 (created); vma. DT 08.04.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GATA-3 XX DE GATA-binding factor 3 XX BF T00314; GATA-3; Species: chick, Gallus gallus. XX P0 A C G T 01 20 7 8 6 N 02 10 5 23 3 G 03 26 6 2 7 A 04 0 0 41 0 G 05 41 0 0 0 A 06 0 0 0 41 T 07 31 5 1 4 A 08 34 2 0 5 A 09 6 8 15 12 N 10 27 2 6 6 A XX BA 41 selected binding sequences XX CC GST-cGATA-3 fusion protein was used for binding site selection from a pool of random oligonucleotides containing a core of three fixed nucleotides (NNNGATNNNN) XX RN [1]; RE0013392. RX PUBMED: 8321208. RA Ko L. J., Engel J. D. RT DNA-binding specificities of the GATA transcription factor family. RL Mol. Cell. Biol. 13:4011-4022 (1993). XX // AC M00351 XX ID V$GATA3_03 XX DT 08.04.1999 (created); vma. DT 08.04.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GATA-3 XX DE GATA-binding factor 3 XX BF T00314; GATA-3; Species: chick, Gallus gallus. XX P0 A C G T 01 17 2 4 3 A 02 11 5 5 5 N 03 18 2 0 6 A 04 0 0 26 0 G 05 26 0 0 0 A 06 0 0 0 26 T 07 8 14 0 4 M 08 11 0 0 15 W 09 8 0 5 13 W 10 21 2 1 2 A XX BA 26 selected binding sequences XX CC GST-cGATA-3 fusion protein was used for binding site selection from a pool of random oligonucleotides containing a core of three fixed nucleotides (NNNGATNNNN) XX RN [1]; RE0013392. RX PUBMED: 8321208. RA Ko L. J., Engel J. D. RT DNA-binding specificities of the GATA transcription factor family. RL Mol. Cell. Biol. 13:4011-4022 (1993). XX // AC M00352 XX ID P$DOF1_01 XX DT 29.04.1999 (created); rhe. DT 29.04.1999 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA Dof1 XX DE Dof1 / MNB1a - single zinc finger transcription factor XX BF T01059; MNB1a; Species: maize, Zea mays, strain H84. XX P0 A C G T 01 8 3 2 2 A 02 7 3 3 2 N 03 2 6 2 5 N 04 6 0 0 9 W 05 15 0 0 0 A 06 15 0 0 0 A 07 15 0 0 0 A 08 0 0 15 0 G 09 5 6 1 3 N 10 4 4 3 4 N 11 4 6 2 2 N XX BA 15 binding sites in 10 selected sequences XX CC 5 rounds of selection from random 20-mers bound to bacterially expressed protein XX RN [1]; RE0013547. RX PUBMED: 10074718. RA Yanagisawa S., Schmidt R. J. RT Diversity and similarity among recognition sequences of Dof transcription factors. RL Plant J. 17:209-214 (1999). XX // AC M00353 XX ID P$DOF2_01 XX DT 29.04.1999 (created); rhe. DT 19.08.1999 (updated); abi. CO Copyright (C), Biobase GmbH. XX NA Dof2 XX DE Dof2 - single zinc finger transcription factor XX BF T02690; Dof2; Species: maize, Zea mays. XX P0 A C G T 01 7 7 2 5 N 02 7 6 4 4 N 03 7 3 4 7 N 04 7 2 2 10 W 05 21 0 0 0 A 06 21 0 0 0 A 07 21 0 0 0 A 08 0 0 21 0 G 09 3 12 2 4 C 10 7 4 6 4 N 11 7 6 5 3 N XX BA 21 binding sites in 11 selected sequences XX CC 5 rounds of selection from random 20-mers bound to bacterially expressed protein XX RN [1]; RE0013547. RX PUBMED: 10074718. RA Yanagisawa S., Schmidt R. J. RT Diversity and similarity among recognition sequences of Dof transcription factors. RL Plant J. 17:209-214 (1999). XX // AC M00354 XX ID P$DOF3_01 XX DT 29.04.1999 (created); rhe. CO Copyright (C), Biobase GmbH. XX NA Dof3 XX DE Dof3 - single zinc finger transcription factor XX BF T02691; Dof3; Species: maize, Zea mays. XX P0 A C G T 01 5 3 10 3 N 02 10 6 3 2 M 03 5 6 6 4 N 04 8 3 3 7 N 05 21 0 0 0 A 06 21 0 0 0 A 07 21 0 0 0 A 08 0 0 21 0 G 09 3 10 3 5 N 10 6 6 7 2 N 11 8 6 4 3 N XX BA 21 binding sites in 13 selected sequences XX BS GTCTAAAGCGT; R13098; 8; 11;; p. BS AATTAAAGTAA; R13099; 3; 11;; p. BS GACGAAAGCAA; R13099; 15; 11;; p. BS AATTAAAGTGC; R13100; 3; 11;; p. BS GTCTAAAGCGA; R13100; 18; 11;; p. BS GCGAAAAGCGA; R13101; 7; 11;; p. BS GCGAAAAGCGA; R13101; 7; 11;; p. BS GCGTAAAGCAG; R13102; 8; 11;; p. BS TAGAAAAGGCG; R13103; 8; 11;; p. BS AATTAAAGTAC; R13104; 3; 11;; p. BS CACAAAAGCCC; R13105; 9; 11;; p. BS GCCCAAAGATC; R13105; 20; 11;; p. BS TGACAAAGCGT; R13106; 6; 11;; p. BS GCGGAAAGATC; R13106; 19; 11;; p. BS AATTAAAGCAA; R13107; 3; 11;; p. BS CAAAAAAGGCG; R13107; 11; 11;; p. BS TAAAAAAGGCT; R13108; 6; 11;; p. BS CAGCAAAGACG; R13108; 17; 11;; p. BS GGAAAAAGCAA; R13109; 8; 11;; p. BS AGCAAAAGTGC; R13109; 14; 11;; p. BS GCAGAAAGTCA; R13110; 7; 11;; p. XX CC 5 rounds of selection from random 20-mers bound to bacterially expressed protein XX RN [1]; RE0013547. RX PUBMED: 10074718. RA Yanagisawa S., Schmidt R. J. RT Diversity and similarity among recognition sequences of Dof transcription factors. RL Plant J. 17:209-214 (1999). XX // AC M00355 XX ID P$PBF_01 XX DT 29.04.1999 (created); rhe. CO Copyright (C), Biobase GmbH. XX NA PBF XX DE PBF (MPBF) XX BF T02692; PBF; Species: maize, Zea mays. XX P0 A C G T 01 7 3 2 4 N 02 7 2 1 6 W 03 4 3 4 5 N 04 9 1 0 6 W 05 16 0 0 0 A 06 16 0 0 0 A 07 16 0 0 0 A 08 0 0 16 0 G 09 4 7 1 4 N 10 3 3 9 1 G 11 7 5 3 1 N XX BA 16 binding sites in 13 selected sequences XX BS ATTAAAAGAAA; R13111; 4; 11;; p. BS AAGAAAAGCTC; R13111; 9; 11;; p. BS TTGCAAAGACA; R13112; 5; 11;; p. BS CCATAAAGCGA; R13112; 18; 11;; p. BS GCAAAAAGCGC; R13113; 8; 11;; p. BS AATTAAAGTAG; R13114; 3; 11;; p. BS AATTAAAGTGT; R13115; 3; 11;; p. BS GTGTAAAGAGG; R13115; 10; 11;; p. BS ATGAAAAGCGA; R13116; 18; 11;; p. BS CACAAAAGTCG; R13117; 16; 11;; p. BS AATTAAAGACA; R13118; 3; 11;; p. BS TGAAAAAGTGC; R13119; 6; 11;; p. BS TACAAAAGCGC; R13120; 10; 11;; p. BS TTAAAAAGCGA; R13121; 5; 11;; p. BS CTCAAAAGCGA; R13122; 17; 11;; p. BS AATTAAAGGAC; R13123; 3; 11;; p. XX CC 5 rounds of selection from random 20-mers bound to bacterially expressed protein XX RN [1]; RE0013547. RX PUBMED: 10074718. RA Yanagisawa S., Schmidt R. J. RT Diversity and similarity among recognition sequences of Dof transcription factors. RL Plant J. 17:209-214 (1999). XX // AC M00356 XX ID P$BZIP910_01 XX DT 06.08.1999 (created); rhe. DT 24.08.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA bZIP910 XX DE bZIP transcription factor from Antirrhinum majus XX BF T02789; bZIP910; Species: garden snapdragon, Antirrhinum majus. XX P0 A C G T 01 0 0 18 0 G 02 14 0 4 0 A 03 0 0 0 18 T 04 0 0 18 0 G 05 18 0 0 0 A 06 0 18 0 0 C 07 0 0 18 0 G 08 0 0 0 18 T 09 0 0 18 0 G 10 0 0 17 1 G 11 0 18 0 0 C 12 10 8 0 0 M XX BA 18 selected binding sequences XX CC 5 rounds of random binding site selection (RBSS) with in-vitro-translated protein from a pool of oligonucleotides carrying 12 random bp flanked by 19 bp on either side XX RN [1]; RE0013780. RX PUBMED: 9680995. RA Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. RT Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors. RL Plant J. 13:489-505 (1998). XX // AC M00357 XX ID P$BZIP910_02 XX DT 06.08.1999 (created); rhe. DT 06.08.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA bZIP910 XX DE bZIP transcription factor from Antirrhinum majus XX BF T02789; bZIP910; Species: garden snapdragon, Antirrhinum majus. XX P0 A C G T 01 0 0 17 0 G 02 1 4 10 2 G 03 6 1 9 1 R 04 2 1 2 12 T 05 0 1 16 0 G 06 1 15 1 0 C 07 0 0 0 17 T 08 0 0 17 0 G 09 17 0 0 0 A 10 0 17 0 0 C 11 0 0 17 0 G 12 0 0 0 17 T XX BA 17 selected binding sequences XX CC 5 rounds of random binding site selection (RBSS) with in-vitro-translated protein from a pool of oligonucleotides carrying 12 random bp flanked by 19 bp on either side XX RN [1]; RE0013780. RX PUBMED: 9680995. RA Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. RT Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors. RL Plant J. 13:489-505 (1998). XX // AC M00358 XX ID P$BZIP911_01 XX DT 06.08.1999 (created); rhe. DT 06.08.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA bZIP911 XX DE bZIP transcription factor from Antirrhinum majus XX BF T02790; bZIP911; Species: garden snapdragon, Antirrhinum majus. XX P0 A C G T 01 1 0 21 0 G 02 10 0 12 0 R 03 0 0 0 22 T 04 0 0 22 0 G 05 22 0 0 0 A 06 0 22 0 0 C 07 0 0 22 0 G 08 0 0 0 22 T 09 0 0 22 0 G 10 0 0 22 0 G 11 4 18 0 0 C 12 1 21 0 0 C XX BA 22 selected binding sequences XX CC 5 rounds of random binding site selection (RBSS) with in-vitro-translated protein from a pool of oligonucleotides carrying 12 random bp flanked by 19 bp on either side XX RN [1]; RE0013780. RX PUBMED: 9680995. RA Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. RT Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors. RL Plant J. 13:489-505 (1998). XX // AC M00359 XX ID P$BZIP911_02 XX DT 06.08.1999 (created); rhe. DT 06.08.1999 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA bZIP911 XX DE bZIP transcription factor from Antirrhinum majus XX BF T02790; bZIP911; Species: garden snapdragon, Antirrhinum majus. XX P0 A C G T 01 0 0 10 0 G 02 6 0 4 0 R 03 0 0 0 10 T 04 0 0 10 0 G 05 10 0 0 0 A 06 0 10 0 0 C 07 0 0 10 0 G 08 0 0 0 10 T 09 0 0 10 0 G 10 0 0 0 10 T 11 8 1 1 0 A 12 0 10 0 0 C XX BA 10 selected binding sequences XX CC 5 rounds of random binding site selection (RBSS) with in-vitro-translated protein from a pool of oligonucleotides carrying 12 random bp flanked by 19 bp on either side XX RN [1]; RE0013780. RX PUBMED: 9680995. RA Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. RT Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors. RL Plant J. 13:489-505 (1998). XX // AC M00360 XX ID V$PAX3_01 XX DT 19.01.2000 (created); rio. DT 19.01.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Pax-3 XX DE Pax-3 binding sites XX BF T00680; Pax-3; Species: mouse, Mus musculus. XX P0 A C G T 01 0 0 0 26 T 02 0 26 0 0 C 03 0 0 26 0 G 04 4 0 0 22 T 05 0 25 0 1 C 06 25 1 0 0 A 07 0 24 0 2 C 08 11 0 15 0 R 09 0 21 4 1 C 10 4 5 1 16 T 11 1 8 0 17 T 12 9 10 0 7 H 13 13 8 3 2 M XX BA 26 sequences from oligonucleotide selection XX CC 5 rounds of selections from a pool of 75 bp oligos containing a core of 25 nt XX RN [1]; RE0014013. RX PUBMED: 7557441. RA Chalepakis G., Gruss P. RT Identification of DNA recognition sequences for the Pax3 paired domain RL Gene 162:267-270 (1995). XX // AC M00361 XX ID P$CDC5_01 XX DT 25.01.2000 (created); rge. DT 29.08.2002 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA CDC5 XX DE transcriptional activator XX BF T02855; CDC5; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 28 24 32 15 N 02 17 26 55 2 G 03 0 92 4 4 C 04 2 2 0 96 T 05 6 85 0 8 C 06 91 2 2 4 A 07 2 0 93 4 G 08 2 93 5 0 C 09 4 4 91 0 G 10 2 55 27 16 C 11 18 23 45 14 N XX BA 99 selected sequences XX CC from a pool of random 26- and 14-mers, oligonucleotides that bind to in E.coli expressed CDC5 were selected by 8-10 rounds of PCR amplification and selection XX RN [1]; RE0014022. RX PUBMED: 8917598. RA Hirayama T., Shinozaki K. RT A cdc5+ homolog of a higher plant, Arabidopsis thaliana RL Proc. Natl. Acad. Sci. USA 93:13371-13376 (1996). XX // AC M00362 XX ID I$dTCF_1 XX DT 31.01.2000 (created); sur. CO Copyright (C), Biobase GmbH. XX NA dTCF XX DE drosophila T-cell factor XX BF T02922; TCF-A; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0 36 0 0 C 02 0 36 0 0 C 03 0 0 0 36 T 04 0 0 0 36 T 05 0 0 0 36 T 06 0 0 36 0 G 07 36 0 0 0 A 08 0 0 0 36 T 09 0 33 0 0 C 10 0 0 0 34 T 11 0 0 0 34 T XX BA 36 XX RN [1]; RE0014038. RX PUBMED: 9118222. RA van der Wetering M., Cavallo R., Dooijes D., van Beest M., van Es J., Loureiro J., Ypma A., Hursh D., Jones T., Bejsovec A., Peifer M., Mortin M., Clevers H. RT Armadillo coactivates transcription driven by the product of the drosophila segment polarity gene dTCF RL Cell 88:789-799 (1997). XX // AC M00366 XX ID P$EMBP1_Q2 XX DT 28.02.2000 (created); rge. DT 22.10.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA EmBP-1 XX DE may be involved in mediating ABA-responses (phytohormone abscisic acid) XX BF T02669; EmBP-1a; Species: wheat, Triticum aestivum. BF T04819; EmBP-1a; Species: maize, Zea mays. BF T01098; EmBP-1b; Species: wheat, Triticum aestivum. XX P0 A C G T 01 1 0 18 4 G 02 6 16 1 0 C 03 0 24 0 0 C 04 24 0 0 0 A 05 0 23 1 0 C 06 0 1 22 0 G 07 0 0 0 24 T 08 1 5 17 1 G 09 6 0 9 8 D 10 6 9 6 2 N XX BA 24 artificial sequences XX BS GCCACGTGGC; R08680; 1; 10;; p. BS GACACGTGTC; R08682; 1; 10;; p. BS TCCACGTGGA; R08683; 1; 10;; p. BS TACACGTGTA; R08684; 1; 10;; p. BS GCCACGTGGC; R08691; 1; 10;; p. BS NNCACGTGNN; R08696; 1; 10;; p. BS ACCACGTGGC; R08699; 1; 10;; p. BS GGCACGTGGC; R08700; 1; 10;; p. BS GCCACGTGTC; R11319; 1; 10;; p. BS GCCACGTGGA; R11320; 1; 10;; p. BS GCCACGTGTA; R11321; 1; 10;; p. BS GACAC TGTC; R11322; 1; 10; 6; p. BS GACACGTGGA; R11323; 1; 10;; p. BS GCCACGTCAC; R11324; 1; 10;; p. BS GCCACGTCAT; R11325; 1; 10;; p. BS GCCACGTCAG; R11326; 1; 10;; p. BS GCCACGTAAG; R11327; 1; 10;; p. BS GCCACGTGTG; R11328; 1; 10;; p. BS GCCACGTGTT; R11329; 1; 10;; p. BS GCCACGTTGC; R11330; 1; 10;; p. BS GACACGTGTG; R11331; 1; 10;; p. BS TCCACGTCAG; R11332; 1; 10;; p. BS TACACGTCAG; R11333; 1; 10;; p. BS GCCAGCTGGA; R11334; 1; 10;; p. XX CC compiled sequences XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0016966. RX PUBMED: 10598101. RA Carlini L. E., Ketudat M., Parsons R. L., Prabhakar S., Schmidt R. J., Guiltinan M. J. RT The maize EmBP-1 orthologue differentially regulates opaque2-dependent gene expression in yeast and cultured maize endosperm cells RL Plant Mol. Biol. 41:339-349 (1999). RN [3]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00367 XX ID P$HBP1A_Q2 XX DT 28.02.2000 (created); rge. DT 03.04.2000 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA HBP-1a XX DE suggested to be involved in the cell cycle-dependent expression of wheat core histone genes XX BF T00937; HBP-1a; Species: wheat, Triticum aestivum. XX P0 A C G T 01 2 1 9 2 G 02 4 7 1 3 N 03 0 11 5 1 C 04 17 0 0 0 A 05 0 17 0 0 C 06 0 0 17 0 G 07 0 0 0 17 T 08 0 4 12 0 G 09 3 0 8 3 G 10 2 10 1 0 C XX BA 17 sequences XX CC compiled sequences (MatDefine (Release 1.1) ) XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00368 XX ID P$CPRF_Q2 XX DT 28.02.2000 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CPRF-1 XX DE may be involved in light-induced gene expression XX BF T01091; CPRF-1; Species: parsley, Petroselinum crispum (P. hortense). XX P0 A C G T 01 0 0 4 3 K 02 3 4 0 0 M 03 0 8 0 0 C 04 8 0 0 0 A 05 0 8 0 0 C 06 0 0 8 0 G 07 0 0 0 8 T 08 0 0 8 0 G 09 0 0 4 3 K 10 2 4 0 1 C XX BA 8 sequences XX CC compiled sequences (MatDefine (Release 1.1)) XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00369 XX ID P$TAF1_Q2 XX DT 28.02.2000 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TAF-1 XX DE activator XX BF T01090; TAF-1; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 3 2 8 2 G 02 3 8 1 3 C 03 1 11 4 1 C 04 17 0 0 0 A 05 0 17 0 0 C 06 0 0 17 0 G 07 0 0 0 17 T 08 0 5 12 0 G 09 4 0 8 3 G 10 2 8 2 3 C XX BA 17 sequences XX CC compiled sequences (MatDefine (Release 1.1) ) XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00370 XX ID P$CPRF3_Q2 XX DT 28.02.2000 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CPRF-3 XX BF T01093; CPRF-3. XX P0 A C G T 01 1 1 4 2 N 02 2 3 0 3 H 03 0 6 4 0 S 04 10 0 0 0 A 05 0 10 0 0 C 06 0 0 10 0 G 07 0 0 0 10 T 08 0 4 6 0 S 09 3 0 3 2 D 10 2 4 1 1 C XX BA 10 sequences XX CC compiled sequences XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00371 XX ID P$CPRF2_Q2 XX DT 28.02.2000 (created); rge. DT 07.06.2000 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA CPRF-2 XX DE constitutively expressed; light-induced nuclear import XX BF T01092; CPRF-2. XX P0 A C G T 01 2 3 4 2 N 02 3 4 0 4 H 03 0 9 4 1 C 04 14 0 0 0 A 05 0 14 0 0 C 06 0 0 14 0 G 07 0 0 0 14 T 08 1 4 9 0 G 09 4 0 4 3 D 10 2 4 3 2 N XX BA 14 sequences XX CC compiled sequences (MatDefine (Release 1.1)) XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00372 XX ID P$O2_02 XX DT 28.02.2000 (created); rge. DT 17.11.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA O2 XX DE Opaque-2 XX BF T00668; Opaque-2; Species: maize, Zea mays. XX P0 A C G T 01 3 3 5 11 N 02 3 13 0 6 C 03 0 18 6 1 C 04 25 0 0 0 A 05 0 25 0 0 C 06 0 0 25 0 G 07 0 0 0 25 T 08 7 7 11 0 V 09 8 0 10 4 R 10 9 5 3 4 N XX BA 25 sequences XX CC compiled sequences (MatDefine (Release 1.1) ) XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00373 XX ID V$PAX4_01 XX DT 28.02.2000 (created); rio. DT 29.02.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Pax-4 XX DE Pax-4 binding sites XX BF T02983; Pax-4a; Species: mouse, Mus musculus. XX P0 A C G T 01 4 7 8 7 N 02 1 4 26 4 G 03 6 16 10 10 N 04 11 15 16 0 V 05 3 3 25 12 G 06 0 4 3 40 T 07 0 29 14 0 C 08 36 1 6 0 A 09 11 5 6 21 N 10 0 4 34 5 G 11 3 30 7 3 C 12 3 3 33 4 G 13 0 7 7 27 T 14 7 5 23 3 G 15 8 11 5 8 N 16 6 4 12 8 N 17 4 14 11 1 S 18 10 5 13 3 N 19 8 6 8 7 N 20 2 13 4 8 Y 21 6 9 6 4 N XX BA 43 binding sequences from oligonucleotide selection XX CC bacterially expressed fusion protein of GST and murine Pax-4 paired domain XX RN [1]; RE0014123. RX PUBMED: 10567553. RA Fujitani Y., Kajimoto Y., Yasuda T., Matsuoka T. A., Kaneto H., Umayahara Y., Fujita N., Watada H., Miyazaki J. I., Yamasaki Y., Hori M. RT Identification of a portable repression domain and an E1A-responsive activation domain in Pax4: a possible role of Pax4 as a transcriptional repressor in the pancreas RL Mol. Cell. Biol. 19:8281-8291 (1999). XX // AC M00374 XX ID P$O2_03 XX DT 28.02.2000 (created); rge. DT 17.11.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA O2 XX DE Opaque-2 XX BF T00668; Opaque-2; Species: maize, Zea mays. XX P0 A C G T 01 0 0 5 0 G 02 5 0 0 0 A 03 0 0 0 5 T 04 0 0 5 0 G 05 5 0 0 0 A 06 0 2 0 2 Y 07 3 0 1 0 A 08 0 0 0 5 T 09 0 0 5 0 G 10 1 0 3 0 G XX BA 5 sequences XX CC compiled sequences XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00375 XX ID P$TGA1B_Q2 XX DT 28.02.2000 (created); rge. DT 28.02.2000 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA TGA1b XX BF T00830; TGA1b; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 1 2 5 0 G 02 2 3 0 3 H 03 0 5 4 1 S 04 10 0 0 0 A 05 0 10 0 0 C 06 0 0 10 0 G 07 0 0 0 10 T 08 1 5 4 0 S 09 5 0 2 1 A 10 0 5 2 1 C XX BA 10 sequences XX CC compiled sequences XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00376 XX ID P$TGA1A_Q2 XX DT 28.02.2000 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TGA1a XX BF T00829; TGA1a; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 3 8 5 2 N 02 5 4 2 7 N 03 1 9 6 2 S 04 18 0 0 0 A 05 0 18 0 0 C 06 0 0 18 0 G 07 0 0 0 18 T 08 2 7 8 1 S 09 9 2 3 4 A 10 2 5 8 3 N XX BA 18 sequences XX CC compiled sequences XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). RN [2]; RE0013810. RX PUBMED: 8487298. RA Izawa T., Foster R., Chua N.-H. RT Plant bZIP protein DNA binding specificity. RL J. Mol. Biol. 230:1131-1144 (1993). XX // AC M00377 XX ID V$PAX4_02 XX DT 29.02.2000 (created); rio. DT 29.02.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Pax-4 XX DE Pax-4 binding sites XX BF T02983; Pax-4a; Species: mouse, Mus musculus. XX P0 A C G T 01 4 2 7 2 N 02 13 1 4 0 A 03 11 5 1 3 A 04 8 0 2 10 W 05 15 2 2 1 A 06 20 0 0 0 A 07 2 0 0 18 T 08 2 1 1 16 T 09 11 1 4 4 A 10 5 9 5 1 N 11 3 9 6 1 S XX BA 20 binding sequences from 13 rounds of oligonucleotide selection XX CC in vitro produced truncated murine Pax-4 protein (274 of 348 AA) containing both paired and homeo domain; this matrix consists of homeo domain type sequences XX RN [1]; RE0014138. RX PUBMED: 10567552. RA Smith S. B., Ee H. C., Conners J. R., German M. S. RT Paired-homeodomain transcription factor PAX4 acts as a transcriptional repressor in early pancreatic development RL Mol. Cell. Biol. 19:8272-8280 (1999). XX // AC M00378 XX ID V$PAX4_03 XX DT 29.02.2000 (created); rio. DT 29.02.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Pax-4 XX DE Pax-4 binding sites XX BF T02983; Pax-4a; Species: mouse, Mus musculus. XX P0 A C G T 01 6 4 4 3 N 02 8 2 3 4 N 03 3 5 3 6 N 04 4 6 3 4 N 05 4 7 1 5 N 06 2 9 0 6 Y 07 1 15 1 0 C 08 16 0 0 1 A 09 1 14 2 0 C 10 3 12 0 2 C 11 1 12 3 1 C 12 0 6 6 4 B XX BA 17 binding sequences from 13 rounds of oligonucleotide selection XX CC in vitro produced truncated murine Pax-4 protein (274 of 348 AA) containing both paired and homeo domain; this matrix consists of paired domain type sequences XX RN [1]; RE0014138. RX PUBMED: 10567552. RA Smith S. B., Ee H. C., Conners J. R., German M. S. RT Paired-homeodomain transcription factor PAX4 acts as a transcriptional repressor in early pancreatic development RL Mol. Cell. Biol. 19:8272-8280 (1999). XX // AC M00380 XX ID V$PAX4_04 XX DT 29.02.2000 (created); rio. DT 29.02.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Pax-4 XX DE Pax-4 binding sites XX BF T02983; Pax-4a; Species: mouse, Mus musculus. XX P0 A C G T 01 9 1 5 0 R 02 11 2 4 2 A 03 16 1 2 4 A 04 17 2 1 3 A 05 20 1 1 2 A 06 8 2 2 12 W 07 6 2 1 15 T 08 15 1 5 3 A 09 7 6 6 5 N 10 4 10 6 4 N 11 8 9 3 4 N 12 6 9 3 6 N 13 8 7 4 5 N 14 9 6 6 3 N 15 8 7 2 7 N 16 9 5 3 7 N 17 6 5 6 7 N 18 5 11 5 3 N 19 5 10 3 6 N 20 9 8 4 3 N 21 9 4 5 6 N 22 5 10 4 5 N 23 8 10 1 5 N 24 4 9 1 10 Y 25 1 16 4 3 C 26 19 3 0 2 A 27 1 15 2 6 C 28 6 10 2 6 N 29 2 16 4 2 C 30 0 9 4 4 C XX BA 24 binding sequences from 13 rounds of oligonucleotide selection XX CC in vitro produced truncated murine Pax-4 protein (274 of 348 AA) containing both paired and homeo domain; this matrix reveals a bipartite consensus XX RN [1]; RE0014138. RX PUBMED: 10567552. RA Smith S. B., Ee H. C., Conners J. R., German M. S. RT Paired-homeodomain transcription factor PAX4 acts as a transcriptional repressor in early pancreatic development RL Mol. Cell. Biol. 19:8272-8280 (1999). XX // AC M00388 XX ID F$FACBCA_Q2 XX DT 26.05.2000 (created); sth. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA FACB XX DE FACB, activator of acetate utilization genes XX BF T02841; FACB; Species: Aspergillus nidulans, Emericella nidulans. XX P0 A C G T 01 2 4 2 1 N 02 3 2 1 3 N 03 2 5 1 1 C 04 2 1 3 3 N 05 3 3 1 2 N 06 0 0 0 9 T 07 0 9 0 0 C 08 0 7 2 0 C 09 2 3 2 2 N 10 1 2 2 2 N 11 2 0 0 4 T 12 1 3 1 0 C 13 0 3 3 1 S 14 2 3 1 3 N 15 0 2 4 3 K 16 2 4 0 2 C 17 1 2 5 1 G 18 3 2 4 0 R 19 0 1 7 1 G 20 0 1 8 0 G 21 9 0 0 0 A 22 1 0 4 4 K 23 1 3 2 3 N 24 2 2 2 3 N 25 4 0 2 3 W 26 0 3 2 4 Y XX BA 9 compiled genomic sequences from 4 genes XX CC class A FACB binding sites (consensus sequence TCC/G n 8-10 C/GGA) [1]; gap-alignment XX RN [1]; RE0013949. RX PUBMED: 9524126. RA Todd R. B., Andrianopoulos A., Davis M. A., Hynes M. J. RT FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences RL EMBO J. 17:2042-2054 (1998). XX // AC M00389 XX ID F$FACBCB_Q2 XX DT 26.05.2000 (created); sth. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA FACB XX DE FACB, activator of acetate utilization genes XX BF T02841; FACB; Species: Aspergillus nidulans, Emericella nidulans. XX P0 A C G T 01 1 2 1 1 N 02 0 2 1 2 Y 03 0 1 3 1 G 04 1 1 0 3 T 05 2 1 0 2 W 06 0 0 5 0 G 07 0 5 0 0 C 08 4 1 0 0 A 09 1 0 4 0 G 10 1 2 0 1 C 11 0 0 2 2 K 12 0 1 0 2 T 13 1 0 0 3 T 14 1 0 0 3 T 15 0 2 1 2 Y 16 0 0 3 2 K 17 1 4 0 0 C 18 1 1 0 3 T 19 0 3 0 2 Y 20 0 1 3 1 G 21 0 0 5 0 G 22 0 5 0 0 C 23 2 2 1 0 M 24 2 2 0 1 M 25 0 1 2 2 K 26 1 0 0 4 T XX BA 5 compiled genomic sequences from 3 genes XX CC class B FACB binding sites (consensus sequence GCA/C n 8-10 T/GGC) [1]; gap-alignment XX RN [1]; RE0013949. RX PUBMED: 9524126. RA Todd R. B., Andrianopoulos A., Davis M. A., Hynes M. J. RT FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences RL EMBO J. 17:2042-2054 (1998). XX // AC M00390 XX ID F$FACBALL_Q2 XX DT 26.05.2000 (created); sth. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA FACB XX DE FACB, activator of acetate utilization genes XX BF T02841; FACB; Species: Aspergillus nidulans, Emericella nidulans. XX P0 A C G T 01 3 6 3 2 N 02 3 3 3 5 N 03 2 6 4 2 N 04 3 2 3 6 N 05 5 4 1 4 N 06 0 0 5 9 K 07 0 14 0 0 C 08 4 8 2 0 C 09 3 3 6 2 N 10 2 4 2 3 N 11 2 0 2 6 T 12 1 4 1 2 C 13 1 3 3 4 N 14 2 5 2 5 N 15 0 5 4 5 B 16 3 8 1 2 C 17 2 3 5 4 N 18 3 5 4 2 N 19 0 2 10 2 G 20 1 1 12 0 G 21 9 5 0 0 M 22 3 2 4 4 N 23 3 5 2 4 N 24 2 3 4 5 N 25 5 0 2 7 W 26 1 4 4 5 N XX BA 14 compiled genomic sequences from 4 genes XX CC weaker matrix (Class A and B), gap-alignment XX RN [1]; RE0013949. RX PUBMED: 9524126. RA Todd R. B., Andrianopoulos A., Davis M. A., Hynes M. J. RT FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences RL EMBO J. 17:2042-2054 (1998). XX // AC M00391 XX ID F$UAY_Q2 XX DT 30.05.2000 (created); sth. DT 06.06.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA UAY XX DE UAY (Aspergillus nidulans, involved in purine utilization) XX BF T02846; UAY; Species: Aspergillus nidulans, Emericella nidulans. XX P0 A C G T 01 3 0 2 0 R 02 1 1 0 3 T 03 0 5 0 0 C 04 0 0 5 0 G 05 0 3 2 0 S 06 3 2 0 0 M 07 1 0 3 1 G 08 0 2 2 1 S 09 2 2 0 1 M 10 0 2 2 1 S 11 0 0 3 2 K 12 0 5 0 0 C 13 0 5 0 0 C 14 0 0 5 0 G 15 4 1 0 0 A 16 0 3 0 2 Y XX BA 5 compiled sequences from 3 genes XX BS GTCGGAGGCCGCCGAC; R08868; 1; 16;; p. BS GCCGCATTCCGCCGAC; R08869; 1; 16;; p. BS AACGCCGCATTCCGCC; R08870; 1; 16;; p. BS ATCGGAGGTGGCCGAT; R08871; 1; 16;; p. BS ATCGCCACAGTCCGAT; R08872; 1; 16;; n. XX RN [1]; RE0013941. RX PUBMED: 7729421. RA Suarez T., Vieira de Queiroz M., Oestreicher N., Scazzocchio C. RT The sequence and binding specificity of UaY, the specific regulator of the purine utilisation pathway in Aspergillus nidulans, suggest an evolutionary relationship with the PPR1 protein of Saccharomyces cerevisiae. RL EMBO J. 14:1453-1467 (1995). XX // AC M00392 XX ID P$AGL3_01 XX DT 07.06.2000 (created); rge. DT 13.06.2000 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA AGL3 XX DE AGL3 XX BF T03025; AGL3; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 22 29 34 10 N 02 16 9 29 41 N 03 25 8 4 58 T 04 27 16 13 39 N 05 0 92 0 3 C 06 0 79 0 16 C 07 82 1 2 10 A 08 40 4 3 48 W 09 56 0 1 38 W 10 35 0 0 60 W 11 65 1 4 25 A 12 25 4 3 63 T 13 64 0 28 3 A 14 0 0 92 3 G 15 33 14 15 33 N 16 52 5 7 31 W 17 45 23 13 14 N 18 21 24 26 24 N XX BA 95 random oligonucleotide XX CC adapted from literature [1] XX RN [1]; RE0014172. RX PUBMED: 7632923. RA Huang H., Tudor M., Weiss C. A., Hu Y., Ma H. RT The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein RL Plant Mol. Biol. 28:549-567 (1995). XX // AC M00393 XX ID P$AGL3_02 XX DT 13.06.2000 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AGL3 XX DE AGL3 XX BF T03025; AGL3; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 18 11 6 7 N 02 8 5 8 21 N 03 5 5 3 29 T 04 14 9 6 13 N 05 2 40 0 0 C 06 0 36 0 6 C 07 34 1 0 7 A 08 18 2 3 19 W 09 28 0 0 14 A 10 19 0 0 23 W 11 28 1 1 12 A 12 3 3 0 36 T 13 29 0 11 2 A 14 0 0 40 2 G 15 12 9 2 19 N 16 25 2 6 9 A 17 23 6 7 6 A 18 9 8 10 15 N XX BA 42 random oligonucleotides XX CC adapted from literature, sequences with no overlap between the constant ends and the region from positions -3 to -13 [1] XX RN [1]; RE0014172. RX PUBMED: 7632923. RA Huang H., Tudor M., Weiss C. A., Hu Y., Ma H. RT The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein RL Plant Mol. Biol. 28:549-567 (1995). XX // AC M00394 XX ID V$MSX1_01 XX DT 22.06.2000 (created); rio. DT 11.07.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Msx-1 XX DE msh-like (muscle segment homeobox) homeobox protein 1 XX BF T02072; Msx-1; Species: mouse, Mus musculus. XX P0 A C G T 01 2 8 1 2 C 02 3 4 3 3 N 03 1 3 7 2 G 04 1 1 1 10 T 05 8 1 1 3 A 06 7 2 0 4 W 07 4 2 2 5 N 08 0 1 1 11 T 09 1 1 10 1 G XX BA 13 sites selected from random oligonucleotides XX BS CACTAATTG; R09067; 1; 9;; p. BS TGGTAATTG; R09068; 5; 9;; p. BS GCATAATCA; R09069; 1; 9;; p. BS TAGTGATTT; R09070; 1; 9;; p. BS ACCGATATG; R09071; 3; 9;; p. BS CCGAAAATG; R09072; 1; 9;; p. BS ACTTTTATG; R09073; 6; 9;; p. BS CTGTTATGG; R09074; 5; 9;; p. BS CTGTATCTG; R09075; 9; 9;; p. BS CTCCAACTG; R09076; 2; 9;; p. BS CGTTCCGTG; R09077; 4; 9;; p. BS CAGTACATC; R09078; 1; 9;; p. BS CGGTTTGTG; R09079; 4; 9;; p. XX CC 14 bp random sequence, 4 rounds of selection XX RN [1]; RE0003871. RX PUBMED: 8096059. RA Catron K. M., Iller N., Abate C. RT Nucleotides flanking a conserved TAAT core dictate the DNA binding specifity of three murine homeodomain proteins RL Mol. Cell. Biol. 13:2354-2365 (1993). XX // AC M00395 XX ID V$HOXA3_01 XX DT 23.06.2000 (created); rio. DT 11.07.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA HOXA3 XX DE HOXA3 (homeobox cluster protein) XX BF T00378; HOXA3; Species: mouse, Mus musculus. XX P0 A C G T 01 1 9 3 1 C 02 3 5 5 1 N 03 1 1 1 11 T 04 9 0 2 3 A 05 6 2 2 4 N 06 3 1 3 7 N 07 4 1 4 5 N 08 1 1 7 5 K 09 1 3 5 5 N XX BA 14 sites selected from random oligonucleotides XX BS GGTAATTTG; R09080; 4; 9;; p. BS CATAATAGC; R09081; 3; 9;; p. BS CCAGATGGC; R09082; 7; 9;; p. BS CATAAAAAT; R09083; 3; 9;; p. BS GCTAAGATT; R09084; 4; 9;; p. BS TTCACTACT; R09085; 8; 9;; p. BS CCTACTGTA; R09086; 5; 9;; p. BS CCTTTGTTG; R09087; 3; 9;; p. BS ACGAGATTG; R09088; 4; 9;; p. BS GGTATTCGG; R09089; 5; 9;; p. BS CGTAAAGGT; R09090; 3; 9;; p. BS CGTTGCTGT; R09091; 4; 9;; p. BS CATGTTGGG; R09092; 3; 9;; p. BS CGTTTGTGC; R09093; 5; 9;; p. XX CC 14 bp random sequence, 4 rounds of selection XX RN [1]; RE0003871. RX PUBMED: 8096059. RA Catron K. M., Iller N., Abate C. RT Nucleotides flanking a conserved TAAT core dictate the DNA binding specifity of three murine homeodomain proteins RL Mol. Cell. Biol. 13:2354-2365 (1993). XX // AC M00396 XX ID V$EN1_01 XX DT 23.06.2000 (created); rio. DT 11.07.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA En-1 XX DE engrailed 1 XX BF T02016; En-1; Species: mouse, Mus musculus. XX P0 A C G T 01 3 0 7 0 G 02 2 0 0 8 T 03 6 0 2 2 A 04 4 1 3 2 N 05 1 0 0 9 T 06 1 2 3 4 N 07 1 2 5 2 N XX BA 10 sites selected from random oligonucleotides XX BS GTAATTG; R09094; 4; 7;; p. BS ATAATCC; R09095; 3; 7;; p. BS GTGGTTG; R09096; 8; 7;; p. BS GTAGAAT; R09097; 5; 7;; p. BS ATAGTTG; R09098; 2; 7;; p. BS GTTATGA; R09099; 3; 7;; p. BS GTATTCC; R09100; 6; 7;; p. BS AAAATGG; R09101; 5; 7;; p. BS GTTTTGT; R09102; 8; 7;; p. BS GAGCTTG; R09103; 6; 7;; p. XX CC 14 bp random sequence, 4 rounds of selection XX RN [1]; RE0003871. RX PUBMED: 8096059. RA Catron K. M., Iller N., Abate C. RT Nucleotides flanking a conserved TAAT core dictate the DNA binding specifity of three murine homeodomain proteins RL Mol. Cell. Biol. 13:2354-2365 (1993). XX // AC M00398 XX ID N$CES2_01 XX DT 14.07.2000 (created); rio. DT 14.07.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA ces-2 XX DE cell-death specification 2 XX BF T03583; ces-2; Species: Caenorhabditis elegans. XX P0 A C G T 01 54 7 35 4 R 02 4 2 0 95 T 03 2 2 5 91 T 04 86 0 14 0 A 05 0 98 0 2 C 06 2 0 98 0 G 07 0 26 0 74 T 08 95 5 0 0 A 09 100 0 0 0 A 10 4 49 9 39 Y XX BA selected binding sites from a pool of random oligonucleotides XX CC same binding site consensus as the PAR (proline- and acid-rich) family proteins [1] XX RN [1]; RE0006109. RX PUBMED: 8700229. RA Metzstein M. M., Hengartner M. O., Tsung N., Ellis R. E., Horvitz H. R. RT Transcriptional regulator of programmed cell death encoded by Caenorhabditis elegans gene ces-2 RL Nature 382:545-547 (1996). XX // AC M00399 XX ID P$ABF1_01 XX DT 13.09.2000 (created); rge. DT 17.11.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA ABF1 XX DE ABA (abscisic acid) inducible transcriptional activator XX BF T03820; ABF1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 0 2 12 1 G 02 4 3 0 10 T 03 3 11 4 2 C 04 0 4 12 4 G 05 5 3 3 4 N 06 3 4 5 3 N 07 2 3 12 2 G 08 0 0 15 5 G 09 2 0 12 1 G 10 20 0 0 0 A 11 0 20 0 0 C 12 20 0 0 0 A 13 0 20 0 0 C 14 0 0 20 0 G 15 0 0 0 20 T 16 0 0 20 0 G 17 0 0 17 3 G 18 1 19 0 0 C 19 7 4 4 3 N 20 3 12 3 2 C 21 3 1 12 2 G 22 12 4 1 2 A 23 4 9 5 1 N 24 7 4 6 1 N XX BA 20 selected binding oligonucleotides XX CC 5 rounds of selection / amplification from random 18-mers surrounded by 5 primer nucleotides XX RN [1]; RE0015064. RX PUBMED: 10636868. RA Choi H., Hong J., Ha J., Kang J., Kim S. Y. RT ABFs, a family of ABA-responsive element binding factors RL J. Biol. Chem. 275:1723-1730 (2000). RN [2]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). XX // AC M00400 XX ID P$ABF1_02 XX DT 13.09.2000 (created); rge. DT 17.11.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA ABF1 XX DE ABA (abscisic acid) inducible transcriptional activator XX BF T03820; ABF1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 3 5 1 3 N 02 3 3 2 4 N 03 2 1 6 4 K 04 0 6 0 0 C 05 4 2 6 1 R 06 1 4 3 5 N 07 0 2 0 2 Y 08 0 3 6 3 B 09 3 1 7 2 G 10 0 13 0 0 C 11 0 13 0 0 C 12 13 0 0 0 A 13 0 13 0 0 C 14 0 0 13 0 G 15 0 0 0 13 T 16 0 0 13 0 G 17 0 0 13 0 G 18 0 5 0 0 C 19 2 8 0 1 C 20 4 4 3 1 N 21 2 10 1 0 C 22 1 1 9 0 G 23 10 2 1 0 A 24 0 12 1 0 C 25 10 0 3 0 A XX BA 13 selected binding oligonucleotides XX CC 5 rounds of selection / amplification from random 18-mers surrounded by 5 primer nucleotides XX RN [1]; RE0015064. RX PUBMED: 10636868. RA Choi H., Hong J., Ha J., Kang J., Kim S. Y. RT ABFs, a family of ABA-responsive element binding factors RL J. Biol. Chem. 275:1723-1730 (2000). XX // AC M00401 XX ID P$ABF1_03 XX DT 13.09.2000 (created); rge. DT 17.11.2000 (updated); ewi. CO Copyright (C), Biobase GmbH. XX NA ABF1 XX DE ABA (abscisic acid) inducible transcriptional activator XX BF T03820; ABF1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 0 2 5 0 G 02 0 1 1 6 T 03 0 6 2 0 C 04 0 1 4 3 K 05 1 2 4 1 N 06 0 3 2 3 B 07 0 1 2 5 T 08 0 2 2 5 T 09 0 2 7 0 G 10 3 3 2 1 N 11 0 1 0 8 T 12 0 0 8 1 G 13 9 0 0 0 A 14 0 9 0 0 C 15 0 0 9 0 G 16 0 0 0 9 T 17 0 0 9 0 G 18 0 0 7 2 G 19 0 9 0 0 C 20 4 4 1 0 M 21 3 4 2 0 M 22 1 5 2 1 C 23 2 0 6 1 G 24 5 1 2 1 A 25 0 2 7 0 G 26 4 0 4 0 R 27 1 5 1 0 C XX BA 9 selected binding oligonucleotides XX BS GTCGGTTCCATGACGTGGCGAGGAGGC; R09277; 2; 27;; p. BS GTCGGCTTGATGACGTGGCCACGAGGC; R09278; 2; 27;; p. BS GCCTCCTTCATGACGTGGCACCACGAC; R09279; 1; 27;; p. BS TGTCGTGGCTGACGTGGCACTAGGAG; R09280; 1; 27; 1; p. BS CGGCGCGTGGTGACGTGGCCGAGGC; R09281; 4; 27; 29, 30; p. BS GTCGATTCGGTGACGTGTCCCGGAGGC; R09282; 2; 27;; p. BS CTCTGGCTGCTGACGTGTCCCCGACA; R09283; 3; 27; 29; p. BS TGTCGACGTGGCAACTTGAA; R09284; 1; 27; 1, 2, 3, 4, 5, 6, 7; p. BS GTCGTTGGGCTTACGTGGCAGCGAGGC; R09285; 2; 27;; p. XX CC 5 rounds of selection / amplification from random 18-mers surrounded by 5 primer nucleotides XX RN [1]; RE0015064. RX PUBMED: 10636868. RA Choi H., Hong J., Ha J., Kang J., Kim S. Y. RT ABFs, a family of ABA-responsive element binding factors RL J. Biol. Chem. 275:1723-1730 (2000). XX // AC M00403 XX ID V$AMEF2_Q6 XX DT 19.09.2000 (created); dkl. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA aMEF-2 XX DE myocyte enhancer factor XX BF T01006; aMEF-2; Species: human, Homo sapiens. XX P0 A C G T 01 2 4 2 0 C 02 1 0 4 3 K 03 0 2 5 1 G 04 2 0 2 4 D 05 1 3 0 4 Y 06 0 0 0 8 T 07 8 0 0 0 A 08 6 0 0 2 A 09 8 0 0 0 A 10 6 0 0 2 A 11 6 0 0 1 A 12 2 0 0 6 T 13 6 1 1 0 A 14 4 2 2 0 A 15 0 7 0 1 C 16 1 4 0 3 Y 17 2 3 0 1 M 18 3 2 0 1 M XX BA 8 compiled sequences XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). XX // AC M00404 XX ID P$MADSB_Q2 XX DT 19.09.2000 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MADS-B XX DE floral determination XX BF T03251; AP3:PI; Species: thale cress, Arabidopsis thaliana. BF T03216; DEF:GLO; Species: garden snapdragon, Antirrhinum majus. XX P0 A C G T 01 2 0 1 4 T 02 3 2 0 2 H 03 2 5 0 0 C 04 0 3 1 3 Y 05 7 0 0 0 A 06 5 0 0 2 A 07 7 0 0 0 A 08 6 0 0 1 A 09 7 0 0 0 A 10 0 0 1 6 T 11 0 0 6 1 G 12 1 2 4 0 G 13 4 2 0 0 A 14 5 0 0 1 A 15 4 0 1 1 A XX BA 7 compiled sequences, sequences from class B MADS transcription factors DEF/GLO and AP3/PI XX BS GACCATAAATTCCAT; R08852; 1; 15;; p. BS ATAGAAAAATGC; R08853; 17; 15; 29, 30, 31; p. BS ACCTAAAAAGGAAAG; R08857; 8; 15;; n. BS TACTAAAAATGGAAA; R08876; 53; 15;; n. BS TACCAAAAATGGAAA; R08880; 31; 15;; n. BS TTACATAAATGGAAA; R08907; 19; 15;; p. BS TCCTAAATATGGCTA; R08931; 10; 15;; p. XX CC TRANSFAC quality <=2 XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). XX // AC M00405 XX ID V$MMEF2_Q6 XX DT 19.09.2000 (created); dkl. DT 20.11.2000 (updated); dkl. CO Copyright (C), Biobase GmbH. XX NA MEF-2 XX DE myocyte enhancer factor XX BF T00505; aMEF-2; Species: mouse, Mus musculus. XX P0 A C G T 01 2 5 2 0 C 02 1 0 4 4 K 03 0 3 5 1 S 04 2 1 2 5 N 05 2 3 0 5 Y 06 0 0 0 10 T 07 10 0 0 0 A 08 8 0 0 2 A 09 10 0 0 0 A 10 7 0 0 3 A 11 7 0 0 3 A 12 4 1 0 5 W 13 5 2 3 0 R 14 4 4 1 0 M 15 1 6 1 1 C 16 1 5 0 3 Y XX BA 10 compiled sequences XX BS CGCTCTAAAAATAACC; R00244; 13; 16;; p. BS CTCTATAAATAACCCT; R03583; 3; 16;; p. BS GGGGTTAAAAATAACC; R03584; 3; 16;; n. BS CTGGTTATAATTAACC; R03585; 1; 16;; p. BS GGGTTTAAAATAGCAA; R03586; 2; 16;; p. BS CAGATTAAAAATAACT; R03587; 1; 16;; p. BS AGGACTAAAAAAGGCC; R03588; 1; 16;; p. BS ATTTCTATATATACTT; R03589; 1; 16;; p. BS CTTAAAATAG; R04212; 1; 16; 1,2,3,14,15,16; n. BS CTCTATAAATACCCGC; R09144; 9; 16;; p. XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). XX // AC M00406 XX ID V$HMEF2_Q6 XX DT 19.09.2000 (created); dkl. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA MEF-2 XX DE myocyte enhancer factor XX BF T01005; MEF-2A; Species: human, Homo sapiens. XX P0 A C G T 01 1 5 4 1 S 02 1 0 4 6 K 03 0 7 0 4 Y 04 0 0 0 11 T 05 11 0 0 0 A 06 9 0 0 2 A 07 11 0 0 0 A 08 11 0 0 0 A 09 10 0 0 1 A 10 0 0 0 11 T 11 11 0 0 0 A 12 10 1 0 0 A 13 0 11 0 0 C 14 0 7 0 4 Y 15 1 8 0 2 C 16 3 3 0 5 H XX BA 11 compiled sequences XX BS CTCTAAAAATAACCCT; R00244; 15; 16;; p. BS CTCTATAAATAACCCT; R03583; 3; 16;; p. BS GGTTAAAAATAACCCC; R03584; 1; 16;; n. BS GGTTATAATTAACCCA; R03585; 3; 16;; p. BS GATTAAAAATAACTAA; R03587; 3; 16;; p. BS CTCTAAAAATAACCCT; R05148; 1; 16;; p. BS CTCTAAAAATAACTCC; R05149; 1; 16;; p. BS CTCTAAAAATAACTCT; R05150; 1; 16;; p. BS TTTTAAAAATAACTTT; R05151; 1; 16;; p. BS GGCTAAAAATAACCCC; R05152; 1; 16;; p. BS AGCTAAAAATACCCTA; R09149; 3; 16;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). XX // AC M00407 XX ID V$RSRFC4_Q2 XX DT 19.09.2000 (created); dkl. DT 27.08.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA RSRFC4 XX BF T01009; RSRFC4; Species: human, Homo sapiens. XX P0 A C G T 01 17 3 2 3 A 02 6 2 4 9 N 03 3 0 13 9 K 04 0 22 1 4 C 05 0 0 0 27 T 06 27 0 0 0 A 07 14 0 0 13 W 08 19 0 0 8 A 09 23 0 0 4 A 10 27 0 0 0 A 11 0 0 0 27 T 12 27 0 0 0 A 13 3 0 24 0 G 14 14 10 1 1 M 15 8 7 0 12 H 16 4 9 1 10 Y 17 4 5 8 7 N XX BA 27 compiled sequences XX BS GCTCTAAAAATAACTC; R00248; 4; 17; 20; p. BS GATCTATAAATAGTTTT; R03606; 8; 17;; n. BS TTTCTATAAATAGCCCA; R05504; 15; 17;; n. BS A GTTATAAATAG TTG; R05505; 15; 17; 18, 30; n. BS AAGTTATAAATAGAACA; R05506; 13; 17;; n. BS AT CTATAAATAACACG; R05507; 18; 17; 32; n. BS AAACTAAAAATAGATT; R05508; 18; 17; 18; n. BS CTGCTAAAAATAGATTG; R05509; 11; 17;; n. BS AT CTAAAAATAGAAAG; R05510; 18; 17; 32; n. BS A TCTAAAAATAGCCCC; R05511; 15; 17; 30; n. BS ATTCTAAAAATAGCT A; R05512; 12; 17; 13; n. BS GCTAAAAATAGATCT; R05513; 15; 17; 30,31; n. BS TGTCTAAAAATAGCATC; R05514; 21; 17;; n. BS CGGCTAAAAATAGATGT; R05515; 20; 17;; n. BS AAGTTAAAAATAGCAA; R05516; 18; 17; 18; n. BS ATACTATTAATAGCCTC; R05518; 13; 17;; n. BS TTGCTATTAATAGGC T; R05519; 12; 17; 13; n. BS ACGCTATTAATAGACCG; R05520; 21; 17;; n. BS AGGCTATTAATAGATTT; R05521; 13; 17;; n. BS A GCTATTAATAGAATG; R05522; 15; 17; 30; n. BS AAAGTATTAATAGCCAC; R05523; 13; 17;; n. BS ATGTTATTAATAGAT T; R05524; 12; 17; 13; n. BS TTCTAAATATAGCCAT; R05525; 12; 17; 28; n. BS AATCTAAATATAGAATG; R05526; 16; 17;; n. BS AGTCTAAATATAAATCA; R05527; 19; 17;; n. BS C GCTATATATAGAACC; R05528; 14; 17; 29; n. BS A GCTAATAATAGATTG; R05529; 15; 17; 30; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). XX // AC M00408 XX ID P$MADSA_Q2 XX DT 19.09.2000 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MADS-A XX DE determines identity of floral meristem and sepal and petal development XX BF T01775; AP1; Species: thale cress, Arabidopsis thaliana. BF T03178; SQUA; Species: garden snapdragon, Antirrhinum majus. XX P0 A C G T 01 3 0 0 1 A 02 1 0 1 2 D 03 2 0 0 2 W 04 1 2 0 1 C 05 0 2 1 1 C 06 3 0 1 0 A 07 4 0 0 0 A 08 4 0 0 0 A 09 4 0 0 0 A 10 4 0 0 0 A 11 0 0 0 4 T 12 0 0 4 0 G 13 0 1 3 0 G 14 3 0 0 0 A 15 3 0 0 0 A 16 2 0 0 1 A XX BA 4 compiled sequences, sequences derived from MADS class A factors AP1 and Squa XX BS AGTTCGAAAATGGAAT; R08852; 9; 16;; n. BS AATAGAAAAATGC; R08853; 16; 16; 29, 30, 31; p. BS TTACTAAAAATGGAAA; R08876; 53; 16;; n. BS ATACCAAAAATGGAAA; R08880; 31; 16;; n. XX CC TRANSFAC quality <= 2 XX RN [1]; RE0016965. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0001 (2000). XX // AC M00410 XX ID V$SOX9_B1 XX DT 25.09.2000 (created); akl. DT 29.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA SOX-9 XX DE SOX (SRY-related HMG box) XX BF T01853; Sox9; Species: human, Homo sapiens. XX P0 A C G T 01 21 18 11 23 N 02 20 17 19 17 N 03 33 11 12 17 N 04 20 5 33 15 N 05 53 6 6 8 A 06 57 3 2 11 A 07 0 73 0 0 C 08 73 0 0 0 A 09 73 0 0 0 A 10 5 0 0 68 T 11 22 3 42 6 R 12 13 8 48 4 G 13 22 10 29 12 N 14 23 14 16 20 N XX BA 73 selected binding sequences XX BS CGCGAACAATGGGG; R09293; 10; 14;; p. BS CAAAAACAATGCGT; R09294; 13; 14;; p. BS CCAGAACAATACCC; R09295; 21; 14;; p. BS ACCTATCAATGGGC; R09296; 14; 14;; p. BS CGCGAACAATGGGC; R09297; 10; 14;; p. BS AAGTAACAATCGGT; R09298; 16; 14;; p. BS TCGCGTCAATATGA; R09299; 9; 14;; p. BS CGAGAACAATGGCC; R09300; 10; 14;; p. BS ACATCACAATGGTC; R09301; 14; 14;; p. BS CATCTGCAATAACC; R09302; 16; 14;; p. BS CAAAAACAATAGAC; R09303; 19; 14;; p. BS CGTGAACAATGCTA; R09304; 10; 14;; p. BS CCACAACAATGGGA; R09305; 12; 14;; p. BS CAAGAACAATGCGT; R09306; 13; 14;; p. BS CAAAAACAATAGAT; R09307; 19; 14;; p. BS TAACCCCAATCCAT; R09308; 15; 14;; p. BS CGAAGCCAATTCTA; R09309; 10; 14;; p. BS TAGTCCCAATGTCC; R09310; 14; 14;; p. BS ACCTATCAATGGGC; R09311; 14; 14;; p. BS GTCGATCAATTAGT; R09312; 8; 14;; p. BS GTAAAACAATGGCA; R09313; 18; 14;; p. BS TAAGAACAATAGGG; R09314; 21; 14;; p. BS TCGGAACAATGGCG; R09315; 9; 14;; p. BS GGAGAACAATGGGT; R09316; 11; 14;; p. BS CGTAAACAATAGTT; R09317; 10; 14;; p. BS CGAGAACAATGGGG; R09318; 15; 14;; p. BS CTAGAACAATGAAC; R09319; 18; 14;; p. BS ATCAAACAATAGAC; R09320; 13; 14;; p. BS ACAGAACAATGGAG; R09321; 15; 14;; p. BS GGAGAACAATGGGT; R09322; 13; 14;; p. BS AGAATACAATAGGA; R09323; 12; 14;; p. BS TCGGTACAATAGCC; R09324; 13; 14;; p. BS GTAAAACAATAGAA; R09325; 14; 14;; p. BS ACGGCACAATGAGG; R09326; 13; 14;; p. BS ATAGAACAATGGAG; R09327; 23; 14;; p. BS GAAGAACAATAGGT; R09328; 11; 14;; p. BS TGAGAACAATAGAA; R09329; 22; 14;; p. BS AAAGCACAATGGGG; R09330; 21; 14;; p. BS AGAGAACAATGGTA; R09331; 19; 14;; p. BS TTTAAACAATGGAA; R09332; 19; 14;; p. BS TGAGAACAATAGAT; R09333; 22; 14;; p. BS TCGAAACAATAGGA; R09334; 9; 14;; p. BS AAAAAACAATAGGG; R09335; 13; 14;; p. BS TATGAACAATGGGT; R09336; 12; 14;; p. BS TATGAACAATGGGT; R09337; 13; 14;; p. BS GGAGAACAATAGAT; R09338; 16; 14;; p. BS AAAGAACAATGACA; R09339; 15; 14;; p. BS ATTAAACAATGACA; R09340; 21; 14;; p. BS GAAGAACAATGGAT; R09341; 20; 14;; p. BS CGTTAACAATGAAT; R09342; 10; 14;; p. BS TTGCAACAATAGAA; R09343; 12; 14;; p. BS ATTAGACAATGAAG; R09344; 18; 14;; p. BS AGGAAACAATAGAA; R09345; 15; 14;; p. BS GCAGAACAATGGGA; R09346; 27; 14;; p. BS ACAATACAATGGTA; R09347; 17; 14;; p. BS AGAGAACAATGCAA; R09348; 23; 14;; p. BS AATAAACAATGGAC; R09349; 21; 14;; p. BS TGTAAACAATAGGA; R09350; 21; 14;; p. BS GTCGTGCAATGTGA; R09351; 8; 14;; p. BS ATCTGTCAATTGTA; R09352; 19; 14;; p. BS ATCTGTCAATGTTG; R09353; 25; 14;; p. BS TCTTGTCAATCGAA; R09354; 24; 14;; p. BS CATGTTCAATTGTT; R09355; 21; 14;; p. BS TGTTAACAATGAGG; R09356; 28; 14;; p. BS TCTTTTCAATACTC; R09357; 22; 14;; p. BS TTGTAACAATAATT; R09358; 24; 14;; p. BS TTGTTTCAATTGAG; R09359; 27; 14;; p. BS TCGTCACAATTGTT; R09360; 9; 14;; p. BS TCTAAACAAAGGCT; R09361; 15; 14;; p. BS TTAAAACAAAGAGG; R09362; 21; 14;; p. BS TTCGAACAAAGGAA; R09363; 14; 14;; p. BS GACTAACAAAGAGG; R09364; 22; 14;; p. BS CATGATCAAAGAGG; R09365; 28; 14;; p. XX CC From a pool of oligonucleotides with a 26 bp random sequence flanked by two PCR primer sites (BamHI and EcoRI). They were selected by binding to in vitro-translated SOX-9 (7 rounds of PCR amplification and selection). XX RN [1]; RE0014522. RX PUBMED: 9973626. RA Mertin S., McDowall S. G., Harley V. R. RT The DNA-binding specificity of SOX9 and other SOX proteins RL Nucleic Acids Res. 27:1359-1364 (1999). XX // AC M00411 XX ID V$HNF4_01_B XX DT 26.09.2000 (created); akl. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF-4alpha1 XX DE Hepatocyte nuclear factor 4 XX BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 5 3 8 2 N 02 7 2 9 1 R 03 1 0 18 0 G 04 2 0 15 2 G 05 4 3 6 6 N 06 0 19 0 0 C 07 19 0 0 0 A 08 19 0 0 0 A 09 19 0 0 0 A 10 0 0 19 0 G 11 0 1 12 6 G 12 1 4 2 12 T 13 1 16 0 2 C 14 13 0 6 0 A 15 2 6 5 5 N XX BA 19 selected binding sequences XX BS AGGATCAAAGTCCAA; R09367; 4; 15;; p. BS ATGGACAAAGCCTAC; R09368; 4; 15;; p. BS GGGGACAAAGGTCAT; R09369; 3; 15;; p. BS CAGTCCAAAGTGTGC; R09370; 4; 15;; p. BS AGGGCAAAGGTCAG; R09371; -1; 15;; p. BS GGGGTCAAAGGTCG; R09372; 4; 15;; p. BS TGGACCAAAGTCCAC; R09373; 1; 15;; p. BS CAGGGCAAAGTACAG; R09374; 2; 15;; p. BS ACGGTCAAAGTTCAT; R09375; 4; 15;; p. BS TAGGGCAAAGGTCAG; R09376; 2; 15;; p. BS GAGGGCAAAGTCAAC; R09377; 2; 15;; p. BS GGAGCCAAAGGTCGC; R09378; 1; 15;; p. BS GGGGTCAAAGGTCGA; R09379; 4; 15;; p. BS CAGGACAAAGGTCAC; R09380; 2; 15;; p. BS GGGGTCAAAGGTCGG; R09381; 4; 15;; p. BS GGGTACAAAGGTCAT; R09382; 4; 15;; p. BS AAGGGCAAAGGGCAG; R09383; 2; 15;; p. BS GCGGTCAAAGGTCGT; R09384; 4; 15;; p. BS AGGGGCAAAGGTCAT; R09385; 3; 15;; p. XX CC From a pool of oligonucleotides with a a 30 bp random sequence flanked by two PCR primer sites. They were selected by binding to in vitro-translated HNF-4 (5 rounds of PCR amplification and selection). XX RN [1]; RE0013346. RX PUBMED: 9592157. RA Fraser J. D., Martinez V., Straney R., Briggs M. R. RT DNA binding and transcription activation specificity of hepatocyte nuclear factor 4 RL Nucleic Acids Res. 26:2702-2707 (1998). XX // AC M00412 XX ID V$AREB6_01 XX DT 09.10.2000 (created); rio. DT 10.10.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA AREB6 XX DE AREB6 (Atp1a1 regulatory element binding factor 6) XX BF T00625; ZEB (1124 AA); Species: human, Homo sapiens. XX P0 A C G T 01 3 3 2 4 N 02 5 3 1 3 N 03 0 6 1 5 Y 04 2 1 3 6 N 05 1 4 0 7 Y 06 12 0 0 0 A 07 0 12 0 0 C 08 0 12 0 0 C 09 0 0 0 12 T 10 0 0 12 0 G 11 4 1 1 6 W 12 3 3 6 0 V 13 1 3 1 7 T XX BA 12 sites selected from random oligonucleotides XX BS AATTCACCTGCGT; R09389; 1; 13;; p. BS AACGTACCTGTGA; R09390; 1; 13;; p. BS AATTCACCTGGGC; R09391; 1; 13;; p. BS GCTGCACCTGTCT; R09392; 1; 13;; p. BS TTCACACCTGAGT; R09393; 1; 13;; p. BS CCCTTACCTGTGG; R09394; 1; 13;; p. BS TGCTAACCTGTAC; R09395; 1; 13;; p. BS CCTGTACCTGAAT; R09396; 1; 13;; p. BS TACCTACCTGTCC; R09397; 1; 13;; p. BS TTTTTACCTGAGT; R09398; 1; 13;; p. BS CACATACCTGTCT; R09399; 1; 13;; p. BS GTGTTACCTGAAT; R09400; 1; 13;; p. XX CC 16 bp randomized region, 3 rounds of selection, GST fusion protein with N-terminal zinc finger cluster was used for EMSA XX RN [1]; RE0011035. RX PUBMED: 7588776. RA Ikeda K., Kawakami K. RT DNA binding through distinct domains of zinc-finger-homeodomain protein AREB6 has different effects on gene transcription RL Eur. J. Biochem. 233:73-82 (1995). XX // AC M00413 XX ID V$AREB6_02 XX DT 09.10.2000 (created); rio. DT 10.10.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA AREB6 XX DE AREB6 (Atp1a1 regulatory element binding factor 6) XX BF T00625; ZEB (1124 AA); Species: human, Homo sapiens. XX P0 A C G T 01 7 2 2 6 W 02 4 5 2 6 N 03 6 2 1 8 W 04 0 17 0 0 C 05 17 0 0 0 A 06 0 17 0 0 C 07 0 17 0 0 C 08 0 0 0 17 T 09 2 2 9 4 G 10 5 2 1 9 W 11 6 4 3 4 N 12 3 8 3 3 N XX BA 17 sites selected from random oligonucleotides XX BS TCACACCTAATC; R09401; 1; 12;; p. BS TCCCACCTGAGT; R09402; 1; 12;; p. BS TTCCACCTCTAG; R09403; 1; 12;; p. BS AAACACCTGTAC; R09404; 1; 12;; p. BS ATTCACCTGCCT; R09405; 1; 12;; p. BS CTGCACCTTTTC; R09406; 1; 12;; p. BS ATTCACCTGTCA; R09407; 1; 12;; p. BS TGTCACCTTGCA; R09408; 1; 12;; p. BS AATCACCTTTAT; R09409; 1; 12;; p. BS AAACACCTGTTG; R09410; 1; 12;; p. BS ATTCACCTGAGC; R09411; 1; 12;; p. BS TGACACCTTTAC; R09412; 1; 12;; p. BS ATTCACCTGACA; R09413; 1; 12;; p. BS GCACACCTGAGC; R09414; 1; 12;; p. BS GCTCACCTGTTC; R09415; 1; 12;; p. BS CATCACCTCTAG; R09416; 1; 12;; p. BS TCACACCTACAC; R09417; 1; 12;; p. XX CC 16 bp randomized region, 3 rounds of selection, GST fusion protein with C-terminal zinc finger cluster was used for EMSA XX RN [1]; RE0011035. RX PUBMED: 7588776. RA Ikeda K., Kawakami K. RT DNA binding through distinct domains of zinc-finger-homeodomain protein AREB6 has different effects on gene transcription RL Eur. J. Biochem. 233:73-82 (1995). XX // AC M00414 XX ID V$AREB6_03 XX DT 09.10.2000 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AREB6 XX DE AREB6 (Atp1a1 regulatory element binding factor 6) XX BF T00625; ZEB (1124 AA); Species: human, Homo sapiens. XX P0 A C G T 01 3 5 4 0 V 02 1 4 2 5 N 03 5 0 7 0 R 04 0 12 0 0 C 05 12 0 0 0 A 06 0 11 0 1 C 07 0 11 1 0 C 08 0 0 0 12 T 09 0 0 12 0 G 10 0 1 5 6 K 11 3 1 5 3 N 12 3 6 2 1 C XX BA 12 sites selected from random oligonucleotides XX BS AGACATCTGGCG; R09418; 1; 12;; p. BS CCGCACCTGGAA; R09419; 1; 12;; p. BS GTACACGTGCAA; R09420; 1; 12;; p. BS CCACACCTGTGC; R09421; 1; 12;; p. BS CTGCACCTGTAC; R09422; 1; 12;; p. BS GTGCACCTGGTC; R09423; 1; 12;; p. BS AGACACCTGTGC; R09424; 1; 12;; p. BS CCACACCTGGGG; R09425; 1; 12;; p. BS GCGCACCTGGTC; R09426; 1; 12;; p. BS GAGCACCTGTGT; R09427; 1; 12;; p. BS ATGCACCTGTTC; R09428; 1; 12;; p. BS CTGCACCTGTGA; R09429; 1; 12;; p. XX CC 16 bp randomized region, 4 rounds of selection, GST fusion protein including all DNA binding domains was used for EMSA XX RN [1]; RE0011035. RX PUBMED: 7588776. RA Ikeda K., Kawakami K. RT DNA binding through distinct domains of zinc-finger-homeodomain protein AREB6 has different effects on gene transcription RL Eur. J. Biochem. 233:73-82 (1995). XX // AC M00415 XX ID V$AREB6_04 XX DT 10.10.2000 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AREB6 XX DE AREB6 (Atp1a1 regulatory element binding factor 6) XX BF T00625; ZEB (1124 AA); Species: human, Homo sapiens. XX P0 A C G T 01 3 6 2 1 C 02 0 3 4 5 B 03 0 0 12 0 G 04 0 0 0 12 T 05 0 0 0 12 T 06 0 0 0 12 T 07 0 7 5 0 S 08 4 2 2 4 N 09 3 2 4 3 N XX BA 12 sites selected from random oligonucleotides XX BS CCGTTTGAA; R09430; 1; 9;; p. BS CCGTTTGCG; R09431; 1; 9;; p. BS CGGTTTCTC; R09432; 1; 9;; p. BS TTGTTTGGA; R09433; 1; 9;; p. BS CGGTTTCCG; R09434; 1; 9;; p. BS GTGTTTGAA; R09435; 1; 9;; p. BS ACGTTTCGT; R09436; 1; 9;; p. BS CTGTTTCAC; R09437; 1; 9;; p. BS ATGTTTCTG; R09438; 1; 9;; p. BS CGGTTTGTT; R09439; 1; 9;; p. BS AGGTTTCTG; R09440; 1; 9;; p. BS GTGTTTCAT; R09441; 1; 9;; p. XX CC oligonucleotide AGACACCTGTGC flanked by 35 bp randomized nucleotides in 5' and 3' sides, 4 rounds of selection, GST fusion protein including all DNA binding domains was used for EMSA XX RN [1]; RE0011035. RX PUBMED: 7588776. RA Ikeda K., Kawakami K. RT DNA binding through distinct domains of zinc-finger-homeodomain protein AREB6 has different effects on gene transcription RL Eur. J. Biochem. 233:73-82 (1995). XX // AC M00416 XX ID V$CART1_01 XX DT 24.10.2000 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Cart-1 XX DE Cart-1 (cartilage homeoprotein 1) XX BF T03978; Cart-1; Species: human, Homo sapiens. BF T03980; Cart-1; Species: rat, Rattus norvegicus. BF T03981; Cart-1; Species: clawed frog, Xenopus laevis. BF T03999; Cart-1; Species: mouse, Mus musculus. XX P0 A C G T 01 10 8 3 3 N 02 8 8 7 1 N 03 6 11 3 5 N 04 0 0 0 25 T 05 22 0 1 2 A 06 25 0 0 0 A 07 0 1 0 24 T 08 0 2 6 17 T 09 10 7 4 4 N 10 7 8 5 5 N 11 1 2 0 1 C 12 22 1 2 0 A 13 0 1 0 24 T 14 2 1 0 22 T 15 20 1 3 1 A 16 2 6 7 9 N 17 2 12 3 6 C 18 5 3 6 6 N XX BA 25 sites selected from random oligonucleotides XX CC 4 rounds of selection, GST fusion protein was used for EMSA XX RN [1]; RE0015244. RX PUBMED: 9753625. RA Cai R. L. RT Human CART1, a paired-class homeodomain protein, activates transcription through palindromic binding sites RL Biochem. Biophys. Res. Commun. 250:305-311 (1998). XX // AC M00417 XX ID P$ATHB9_01 XX DT 20.11.2000 (created); rge. DT 20.11.2000 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA ATHB-9 XX DE homeobox transcription factor belonging to the small family of HD-ZIPIII proteins XX BF T04001; ATHB-9; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 4 2 1 2 N 02 5 3 3 3 N 03 5 4 2 5 N 04 3 8 2 5 N 05 0 1 25 0 G 06 0 6 0 20 T 07 25 0 1 0 A 08 26 0 0 0 A 09 0 0 0 26 T 10 0 0 26 0 G 11 26 0 0 0 A 12 0 0 0 26 T 13 0 0 3 23 T 14 17 0 9 0 R 15 0 25 1 0 C 16 5 1 4 7 N 17 2 6 0 4 Y 18 0 3 4 3 B 19 0 5 3 0 S XX BA 26 oligonucleotides XX CC 7 rounds of selection from random 15-mers bound to bacterially expressed protein XX RN [1]; RE0015307. RX PUBMED: 9747806. RA Sessa G., Steindler C., Morelli G., Ruberti I. RT The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins RL Plant Mol. Biol. 38:609-622 (1998). XX // AC M00418 XX ID V$TGIF_01 XX DT 08.12.2000 (created); rio. DT 14.12.2000 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA TGIF XX DE TGIF (5'TG3' interacting factor) XX BF T04076; TGIF; Species: human, Homo sapiens. BF T04077; TGIF; Species: mouse, Mus musculus. XX P0 A C G T 01 7 0 0 1 A 02 1 2 6 0 G 03 0 7 1 2 C 04 0 0 0 15 T 05 0 0 15 0 G 06 0 0 0 15 T 07 0 15 0 0 C 08 14 0 0 1 A 09 3 3 4 3 N 10 4 1 3 4 N 11 7 0 2 3 A XX BA 15 sites selected from random oligonucleotides XX CC 4 rounds of selection, GST fusion protein was used for EMSA XX RN [1]; RE0015444. RX PUBMED: 8537382. RA Bertolino E., Reimund B., Wildt-Perinic D., Clerc R. G. RT A novel homeobox protein which recognizes a TGT core and functionally interferes with a retinoid-responsive motif RL J. Biol. Chem. 270:31178-31188 (1995). XX // AC M00419 XX ID V$MEIS1_01 XX DT 14.12.2000 (created); rio. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA MEIS1 XX DE Meis-1 (myeloid ecotropic viral integration site 1) XX BF T03419; Meis-1; Species: human, Homo sapiens. BF T03390; Meis-1-1; Species: clawed frog, Xenopus laevis. BF T03391; Meis-1-2; Species: clawed frog, Xenopus laevis. BF T03411; Meis-1-3; Species: clawed frog, Xenopus laevis. BF T03388; Meis-1a; Species: mouse, Mus musculus. BF T03389; Meis-1b; Species: mouse, Mus musculus. XX P0 A C G T 01 3 5 2 4 N 02 5 4 1 4 N 03 4 3 5 2 N 04 1 0 1 30 T 05 0 0 32 0 G 06 28 0 1 3 A 07 0 32 0 0 C 08 32 0 0 0 A 09 1 4 26 1 G 10 2 1 3 1 N 11 2 1 2 3 N 12 1 3 2 1 N XX BA 32 sites in 20 selected sequences XX CC random binding site selection: in vitro synthesized GST fusion protein used for EMSA, 5 rounds of selection and amplification [1] XX RN [1]; RE0015480. RX PUBMED: 9343407. RA Shen W. F., Montgomery J. C., Rozenfeld S., Moskow J. J., Lawrence H. J., Buchberg A. M., Largman C. RT AbdB-like Hox proteins stabilize DNA binding by the Meis1 homeodomain proteins RL Mol. Cell. Biol. 17:6448-6458 (1997). XX // AC M00420 XX ID V$MEIS1AHOXA9_01 XX DT 14.12.2000 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MEIS1A:HOXA9 XX DE Meis-1a:HOXA9 heterodimeric binding XX BF T01708; HOXA9; Species: chick, Gallus gallus. BF T01710; HOXA9; Species: mouse, Mus musculus. BF T01711; HOXA9; Species: guinea pig, Cavia sp. BF T03772; HOXA9; Species: Japanese pufferfish, Fugu rubripes. BF T03623; HOXA9a; Species: zebra fish, Brachydanio rerio. BF T01709; HOXA9B; Species: human, Homo sapiens. BF T03624; HOXA9b; Species: zebra fish, Brachydanio rerio. BF T03419; Meis-1; Species: human, Homo sapiens. BF T03388; Meis-1a; Species: mouse, Mus musculus. XX P0 A C G T 01 0 0 0 13 T 02 1 0 12 0 G 03 12 0 1 0 A 04 0 12 1 0 C 05 11 2 0 0 A 06 0 0 13 0 G 07 1 1 4 7 K 08 0 0 0 13 T 09 0 1 1 11 T 10 4 0 1 8 T 11 10 1 0 2 A 12 1 7 0 5 Y 13 2 0 10 1 G 14 10 0 3 0 A XX BA 13 sites selected from random oligonucleotides XX CC 5 rounds of selection; in vitro synthesized factor used for EMSA XX RN [1]; RE0015480. RX PUBMED: 9343407. RA Shen W. F., Montgomery J. C., Rozenfeld S., Moskow J. J., Lawrence H. J., Buchberg A. M., Largman C. RT AbdB-like Hox proteins stabilize DNA binding by the Meis1 homeodomain proteins RL Mol. Cell. Biol. 17:6448-6458 (1997). XX // AC M00421 XX ID V$MEIS1BHOXA9_02 XX DT 14.12.2000 (created); rio. DT 09.01.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA MEIS1B:HOXA9 XX DE Meis-1b:HOXA9 heterodimeric binding XX BF T01708; HOXA9; Species: chick, Gallus gallus. BF T01710; HOXA9; Species: mouse, Mus musculus. BF T01711; HOXA9; Species: guinea pig, Cavia sp. BF T03772; HOXA9; Species: Japanese pufferfish, Fugu rubripes. BF T03623; HOXA9a; Species: zebra fish, Brachydanio rerio. BF T01709; HOXA9B; Species: human, Homo sapiens. BF T03624; HOXA9b; Species: zebra fish, Brachydanio rerio. BF T03419; Meis-1; Species: human, Homo sapiens. BF T03389; Meis-1b; Species: mouse, Mus musculus. XX P0 A C G T 01 0 0 0 14 T 02 0 0 14 0 G 03 14 0 0 0 A 04 0 14 0 0 C 05 13 0 1 0 A 06 0 4 8 2 S 07 1 2 3 8 T 08 1 0 0 13 T 09 1 0 0 13 T 10 4 1 1 8 W 11 13 0 1 0 A 12 0 5 1 8 Y 13 4 0 8 2 R 14 5 2 7 0 R XX BA 14 sites selected from random oligonucleotides XX CC 5 rounds of selection; in vitro synthesized factor used for EMSA XX RN [1]; RE0015480. RX PUBMED: 9343407. RA Shen W. F., Montgomery J. C., Rozenfeld S., Moskow J. J., Lawrence H. J., Buchberg A. M., Largman C. RT AbdB-like Hox proteins stabilize DNA binding by the Meis1 homeodomain proteins RL Mol. Cell. Biol. 17:6448-6458 (1997). XX // AC M00422 XX ID V$FOXJ2_01 XX DT 11.01.2001 (created); rio. DT 12.01.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA FOXJ2 XX DE fork head box J 2 XX BF T04170; FOXJ2; Species: mouse, Mus musculus. BF T04169; FOXJ2 (long isoform); Species: human, Homo sapiens. XX P0 A C G T 01 14 10 2 15 N 02 14 9 3 15 N 03 14 10 8 9 N 04 15 7 3 16 W 05 28 10 3 0 A 06 26 3 7 5 A 07 32 0 9 0 A 08 0 15 0 26 Y 09 41 0 0 0 A 10 41 0 0 0 A 11 41 0 0 0 A 12 0 27 0 14 Y 13 40 0 1 0 A 14 12 9 6 14 N 15 11 10 2 18 N 16 11 12 7 11 N 17 16 11 7 7 N 18 18 5 6 12 N XX BA 41 sites selected from random oligonucleotides XX CC 5 rounds of selection; GST fusion protein used for EMSA; type A binding sequences XX RN [1]; RE0015563. RX PUBMED: 10777590. RA Perez-Sanchez C., Gomez-Ferreria M. A., de La Fuente C. A., Granadino B., Velasco G., Esteban-Gamboa A., Rey-Campos J. RT FHX, a novel fork head factor with a dual DNA binding specificity RL J. Biol. Chem. 275:12909-12916 (2000). XX // AC M00423 XX ID V$FOXJ2_02 XX DT 12.01.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA FOXJ2 XX DE fork head box J 2 XX BF T04170; FOXJ2; Species: mouse, Mus musculus. BF T04169; FOXJ2 (long isoform); Species: human, Homo sapiens. XX P0 A C G T 01 3 1 1 0 A 02 1 2 0 3 Y 03 3 3 0 0 M 04 5 0 0 1 A 05 0 2 0 4 T 06 6 0 0 0 A 07 6 0 0 0 A 08 0 1 0 5 T 09 5 0 1 0 A 10 0 1 1 4 T 11 0 1 0 5 T 12 0 0 1 5 T 13 1 0 2 3 K 14 1 1 1 3 N XX BA 6 sites selected from random oligonucleotides XX BS AATCAATATTGAC; R09788; -1; 14;; p. BS ACAACAACACTTGG; R09789; 4; 14;; p. BS GTCATAATATTTTT; R09790; 2; 14;; p. BS ATCATAATATTTTT; R09791; 1; 14;; p. BS ACCATAATGTCTTT; R09792; 7; 14;; p. BS CTAATAATAGTTGA; R09793; 1; 14;; p. XX CC 5 rounds of selection; GST fusion protein used for EMSA; type B binding sequences XX RN [1]; RE0015563. RX PUBMED: 10777590. RA Perez-Sanchez C., Gomez-Ferreria M. A., de La Fuente C. A., Granadino B., Velasco G., Esteban-Gamboa A., Rey-Campos J. RT FHX, a novel fork head factor with a dual DNA binding specificity RL J. Biol. Chem. 275:12909-12916 (2000). XX // AC M00424 XX ID V$NKX61_01 XX DT 06.02.2001 (created); rio. DT 12.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA NKX6-1 XX DE NKX6-1 XX BF T04261; Nkx6-1; Species: golden (Syrian) hamster, Mesocricetus auratus. BF T04268; Nkx6-1; Species: human, Homo sapiens. BF T04269; Nkx6-1; Species: mouse, Mus musculus. BF T04270; Nkx6-1; Species: chick, Gallus gallus. BF T04297; Nkx6-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 3 4 1 9 T 02 6 1 0 10 W 03 1 3 0 13 T 04 0 0 1 16 T 05 0 0 0 17 T 06 17 0 0 0 A 07 17 0 0 0 A 08 0 0 0 17 T 09 1 0 4 12 T 10 1 0 14 2 G 11 3 2 10 2 G 12 5 1 0 11 T 13 2 1 1 13 T XX BA 17 sites in 11 selected sequences from random oligonucleotides XX CC 5 rounds of selection; 2 independent experiments; GST fusion protein used for EMSA XX RN [1]; RE0015720. RX PUBMED: 10567713. RA Jorgensen M. C., Petersen H. V., Ericson J., Madsen O. D., Serup P. RT Cloning and DNA-binding properties of the rat pancreatic beta-cell-specific factor Nkx6.1 RL FEBS Lett. 461:287-294 (1999). XX // AC M00425 XX ID V$E2F_Q3 XX DT 19.02.2001 (created); sth. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA E2F XX DE E2F XX BF T00221; E2F; Species: human, Homo sapiens. XX P0 A C G T 01 1 1 0 7 T 02 0 0 0 9 T 03 0 0 0 9 T 04 0 6 3 0 C 05 0 0 9 0 G 06 0 9 0 0 C 07 0 0 9 0 G 08 0 7 2 0 C XX BA 9 compiled genomic binding sites in 6 genes from 4 species XX CC TRANSFAC quality: 3 (immunologically characterized binding activity) XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00426 XX ID V$E2F_Q4 XX DT 19.02.2001 (created); sth. DT 23.03.2001 (updated); ire. CO Copyright (C), Biobase GmbH. XX NA E2F XX DE E2F XX BF T00221; E2F; Species: human, Homo sapiens. XX P0 A C G T 01 1 2 0 16 T 02 0 0 0 19 T 03 1 0 0 18 T 04 0 10 9 0 S 05 0 3 16 0 G 06 0 16 3 0 C 07 0 2 17 0 G 08 0 11 7 1 S XX BA 19 compiled genomic E2F binding sites in 8 genes from 4 species XX CC TRANSFAC-quality 4 (binding activity characterized via known binding sequence) XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00427 XX ID V$E2F_Q6 XX DT 19.02.2001 (created); sth. DT 11.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA E2F XX DE E2F XX BF T00221; E2F; Species: human, Homo sapiens. XX P0 A C G T 01 1 3 1 17 T 02 1 1 0 20 T 03 1 0 0 21 T 04 0 12 10 0 S 05 0 4 17 0 G 06 0 19 3 0 C 07 0 2 20 0 G 08 0 13 8 1 S XX BA 22 compiled genomic sequences in 8 genes from 4 species XX CC TRANSFAC quality: 6 XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00428 XX ID V$E2F1_Q3 XX DT 19.02.2001 (created); sth. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA E2F-1 XX DE E2F-1 XX BF T01542; E2F-1; Species: human, Homo sapiens. XX P0 A C G T 01 1 4 3 5 N 02 0 1 5 7 K 03 2 0 0 11 T 04 0 7 6 0 S 05 0 5 8 0 S 06 0 10 3 0 C 07 0 3 10 0 G 08 0 8 4 1 C XX BA 13 compiled genomic binding sites in 8 genes from 3 species XX CC TRANSFAC quality: 3 (immunologically characterized binding activity) XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00430 XX ID V$E2F1_Q4 XX DT 19.02.2001 (created); sth. DT 19.02.2001 (updated); sth. CO Copyright (C), Biobase GmbH. XX NA E2F-1 XX DE E2F-1 XX BF T01543; E2F-1; Species: mouse, Mus musculus. XX P0 A C G T 01 1 1 1 2 N 02 0 0 0 5 T 03 0 0 0 5 T 04 0 2 3 0 S 05 0 1 4 0 G 06 0 5 0 0 C 07 0 0 5 0 G 08 0 1 4 0 G XX BA 5 compiled genomic binding sites in 4 genes from Mouse XX CC TRANSFAC-quality: 4 XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00431 XX ID V$E2F1_Q6 XX DT 19.02.2001 (created); sth. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA E2F-1 XX DE E2F-1 XX BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. XX P0 A C G T 01 2 6 4 15 T 02 0 2 5 20 T 03 3 0 0 24 T 04 0 16 11 0 S 05 0 9 18 0 G 06 0 24 3 0 C 07 0 3 24 0 G 08 0 17 9 1 S XX BA 27 compiled genomic binding sites in 10 genes from 3 species XX CC TRANSFAC-quality: 6 XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00432 XX ID V$TITF1_Q3 XX DT 25.04.2001 (created); rio. DT 10.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA TTF1 XX DE TTF-1, TITF1 (thyroid transcription factor 1) XX BF T00856; Nkx2-1; Species: rat, Rattus norvegicus. BF T00857; Nkx2-1; Species: human, Homo sapiens. BF T00858; Nkx2-1; Species: chick, Gallus gallus. BF T00859; Nkx2-1; Species: mouse, Mus musculus. BF T02098; Nkx2-1; Species: dog, Canis canis. BF T01518; TTF-1; Species: cattle, Bos taurus. XX P0 A C G T 01 5 0 0 2 A 02 1 4 2 0 S 03 1 0 0 6 T 04 0 6 1 0 C 05 7 0 0 0 A 06 7 0 0 0 A 07 0 0 7 0 G 08 1 1 0 5 T 09 2 0 3 1 R 10 0 0 2 4 K XX BA 7 compiled genomic binding sites in 5 genes from 2 species XX BS ACTCAAGTAT; R01879; 4; 10;; p. BS ACTCAAGTAG; R01880; 5; 10;; p. BS AGTCAAGTGT; R01882; 4; 10;; p. BS TATGAAGTGT; R02471; 8; 10;; n. BS ACTCAAGC; R04322; 1; 10; 1, 2; n. BS TCACAAGATG; R05014; 6; 10;; n. BS AGTCAAGTGT; R08565; 1; 10;; p. XX CC TRANSFAC Sites of quality <= 3 XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00433 XX ID V$HMX1_01 XX DT 02.05.2001 (created); rio. DT 18.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Hmx3 XX DE H6 homeobox 3 XX BF T04446; Nkx5-1; Species: mouse, Mus musculus. XX P0 A C G T 01 0 11 0 0 C 02 11 0 0 0 A 03 11 0 0 0 A 04 0 0 11 0 G 05 0 0 0 11 T 06 0 1 10 0 G 07 0 10 1 0 C 08 0 0 11 0 G 09 1 0 0 10 T 10 1 0 10 0 G XX BA 11 sites selected from random oligonucleotides XX BS CAAGTGCGTG; R09938; 4; 10;; p. BS CAAGTGCGTG; R09940; 4; 10;; p. BS CAAGTCGGAA; R09941; 4; 10;; p. BS CAAGTGCGTG; R09943; 4; 10;; p. BS CAAGTGCGTG; R09944; 4; 10;; p. BS CAAGTGCGTG; R09945; 4; 10;; p. BS CAAGTGCGTG; R09946; 4; 10;; p. BS CAAGTGCGTG; R09947; 4; 10;; p. BS CAAGTGCGTG; R09948; 4; 10;; p. BS CAAGTGCGTG; R09949; 4; 10;; p. BS CAAGTGCGTG; R09950; 18; 10;; p. XX CC 5 rounds of selection XX RN [1]; RE0016078. RX PUBMED: 10206974. RA Amendt B. A., Sutherland L. B., Russo A. F. RT Transcriptional antagonism between Hmx1 and Nkx2.5 for a shared DNA-binding site RL J. Biol. Chem. 274:11635-11642 (1999). XX // AC M00434 XX ID P$PIF3_01 XX DT 15.05.2001 (created); rge. DT 15.05.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA PIF3 XX DE acts in phytochrome signalling pathways XX BF T04492; PIF3; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 2 5 15 5 G 02 5 1 10 11 K 03 11 2 12 2 R 04 6 0 17 4 G 05 5 3 17 2 G 06 11 11 5 0 M 07 0 27 0 0 C 08 27 0 0 0 A 09 0 27 0 0 C 10 0 0 27 0 G 11 0 0 0 27 T 12 0 0 27 0 G 13 11 2 13 1 R 14 9 12 6 0 M 15 3 9 13 2 S 16 11 6 0 10 W 17 4 19 4 0 C 18 4 2 9 12 K XX BA 27 sequences selected by random binding site selection XX CC by random binding site selection with GST:PIF3 XX RN [1]; RE0016175. RX PUBMED: 10797009. RA Martinez-Garcia J. F., Huq E., Quail P. H. RT Direct targeting of light signals to a promoter element-bound transcription factor RL Science 288:859-863 (2000). XX // AC M00435 XX ID P$PIF3_02 XX DT 15.05.2001 (created); rge. DT 15.05.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA PIF3 XX DE acts in phytochrome signalling pathways XX BF T04492; PIF3; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 15 2 9 6 N 02 9 4 10 9 N 03 10 2 13 7 N 04 8 11 13 0 V 05 1 26 5 0 C 06 0 32 0 0 C 07 32 0 0 0 A 08 0 32 0 0 C 09 0 0 32 0 G 10 0 0 0 32 T 11 0 0 32 0 G 12 0 0 32 0 G 13 9 10 11 2 N 14 15 15 0 2 M 15 11 13 8 0 V 16 7 8 11 6 N 17 4 11 6 11 N XX BA 32 sequences selected by random binding site selection XX CC by random binding site selection with HIS6:PIF3 XX RN [1]; RE0016175. RX PUBMED: 10797009. RA Martinez-Garcia J. F., Huq E., Quail P. H. RT Direct targeting of light signals to a promoter element-bound transcription factor RL Science 288:859-863 (2000). XX // AC M00436 XX ID V$IPF1_Q4 XX DT 11.06.2001 (created); rio. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA IPF1 XX BF T04362; IPF1; Species: human, Homo sapiens. BF T04267; IPF1; Species: golden (Syrian) hamster, Mesocricetus auratus. BF T02057; IPF1; Species: mouse, Mus musculus. BF T02058; IPF1; Species: rat, Rattus norvegicus. BF T04541; IPF1; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 2 0 5 0 G 02 3 2 0 2 H 03 2 1 2 2 N 04 1 2 1 3 N 05 0 0 0 7 T 06 7 0 0 0 A 07 7 0 0 0 A 08 0 0 0 7 T 09 1 0 6 0 G 10 5 0 0 2 A 11 1 4 0 1 C 12 2 3 0 1 M XX BA 7 compiled genomic binding sites in 4 genes from 3 species XX BS ACTCTAATGACC; R02709; 13; 12;; p. BS GTGGTAATGTCT; R04225; 3; 12;; p. BS GCTCTAATGA; R04227; 7; 12; 17, 18; p. BS AAATTAATGACA; R10024; 6; 12;; p. BS GAGTTAATGTAC; R10025; 7; 12;; p. BS GTAATAATGACC; R10025; 15; 12;; p. BS GACTTAATAATA; R10032; 1; 12;; p. XX CC TRANSFAC Sites of quality <= 4 XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00437 XX ID V$CHX10_01 XX DT 21.06.2001 (created); rio. DT 15.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA CHX10 XX BF T02970; Chx10; Species: mouse, Mus musculus. BF T04139; Chx10; Species: human, Homo sapiens. BF T04142; Chx10; Species: chick, Gallus gallus. XX P0 A C G T 01 4 3 5 4 N 02 4 4 8 2 N 03 3 8 5 4 N 04 0 1 0 19 T 05 20 0 0 0 A 06 20 0 0 0 A 07 1 0 0 19 T 08 0 0 0 20 T 09 18 1 0 1 A 10 1 2 17 0 G 11 3 15 1 0 C 12 3 5 6 5 N 13 6 6 3 4 N 14 7 2 4 5 N XX BA 20 sites selected from random oligonucleotides XX BS AACTAATTAGCTTA; R09710; 7; 14;; p. BS ACCTAATTACCCGC; R10120; 10; 14;; p. BS TGCTAATTACGACA; R10121; 11; 14;; p. BS AGCTAATTAGAGCG; R10122; 10; 14;; p. BS GGTAAATTAAGCT; R10123; 1; 14; 1; p. BS CCCTAATTAG; R10124; 16; 14; 26, 27, 28, 29; p. BS TGCTAATTAGAGGT; R10125; 5; 14;; p. BS CTTAATTCGCTAT; R10126; 1; 14; 1; p. BS GTTTAATTAGCCAG; R10127; 6; 14;; p. BS GAGTAATTAGCTAA; R10128; 7; 14;; p. BS TTAATTAGCGTC; R10129; 1; 14; 1, 2; p. BS CTCTAATTAGCGCT; R10130; 3; 14;; p. BS GCGTAATTAGCAAT; R10131; 8; 14;; p. BS ACAATTAGCCCA; R10132; 1; 14; 1, 2; p. BS TAGTAATTAGCTAA; R10133; 2; 14;; p. BS TAGTAATTAGCGGG; R10134; 5; 14;; p. BS AGATAATTAGCATA; R10135; 3; 14;; p. BS GGTTAATTAGCCTG; R10136; 9; 14;; p. BS GGATAATTAGCCCA; R10137; 6; 14;; p. BS CGCTAATTAGCTA; R10138; 13; 14; 26; p. XX CC 4 rounds of selection XX RN [1]; RE0015510. RX PUBMED: 10932181. RA Ferda Percin E., Ploder L. A., Yu J. J., Arici K., Horsford D. J., Rutherford A., Bapat B., Cox D. W., Duncan A. M., Kalnins V. I., Kocak-Altintas A., Sowden J. C., Traboulsi E., Sarfarazi M., McInnes R. R. RT Human microphthalmia associated with mutations in the retinal homeobox gene CHX10 RL Nat. Genet. 25:397-401 (2000). RN [2]; RE0016736. RA McInnes R. R. RL direct submission (author) : (). XX // AC M00438 XX ID P$ARF_Q2 XX DT 21.06.2001 (created); rge. DT 21.06.2002 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA ARF XX DE Auxin response element (AuxRE), one half of palindromic sequence XX BF T04514; ARF1; Species: thale cress, Arabidopsis thaliana. BF T04516; ARF2; Species: thale cress, Arabidopsis thaliana. BF T04531; ARF4; Species: thale cress, Arabidopsis thaliana. BF T04507; ARF5; Species: thale cress, Arabidopsis thaliana. BF T04528; ARF6; Species: thale cress, Arabidopsis thaliana. BF T04529; ARF7; Species: thale cress, Arabidopsis thaliana. BF T04530; ARF8; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 0 3 0 2 Y 02 0 0 1 5 T 03 0 0 0 6 T 04 0 0 6 0 G 05 0 0 0 6 T 06 0 6 0 0 C 07 1 1 0 4 T 08 0 6 0 0 C XX BA 6 binding sites (4 artificial and 1 genomic) XX BS CTTGTCTC; R09996; 1; 8;; p. BS CTTGTCAC; R09997; 1; 8;; p. BS TTTGTCTC; R10000; 4; 8;; p. BS CGTGTCTC; R10001; 4; 8;; p. BS TTTGTCCC; R10002; 4; 8;; p. BS TTGTCTC; R10012; 1; 8; 1; p. XX CC compiled sequences XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00439 XX ID P$C1_Q2 XX DT 28.06.2001 (created); rge. DT 10.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA C1 XX BF T01592; C1 (long form); Species: maize, Zea mays. BF T01593; C1 (short form); Species: maize, Zea mays. BF T02946; C1-I; Species: maize, Zea mays. XX P0 A C G T 01 1 7 1 4 Y 02 2 5 2 4 N 03 14 0 0 0 A 04 13 0 0 1 A 05 0 13 1 0 C 06 2 5 1 6 Y 07 7 2 2 2 A 08 2 6 1 4 Y 09 2 7 2 2 C 10 4 4 3 2 N 11 2 4 6 1 S XX BA 14 compiled sites (11 artificial and 3 genomic sites) XX BS CTAACTGCGAC; R08583; 5; 11;; p. BS CCAACC; R08630; 7; 11; 13, 14, 15, 16, 17; p. BS AACTACCGG; R08780; 1; 11; 10, 11; n. BS CTAACTTTGGA; R08781; 28; 11;; p. BS GTAACATACCT; R08782; 19; 11;; p. BS TCAACTACCTA; R08783; 9; 11;; p. BS TAAACACGTGG; R08784; 24; 11;; p. BS CCAACCACCCG; R08786; 28; 11;; p. BS TCAACCACCCG; R08787; 28; 11;; p. BS CCAACGACCAG; R08788; 16; 11;; p. BS TTAAGTATATC; R08789; 13; 11;; p. BS CAATCCATCCG; R08791; 23; 11;; p. BS CGAACCGATAC; R08792; 15; 11;; p. BS AGAACTCTAAC; R08793; 11; 11;; p. XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00440 XX ID P$CG1_Q6 XX DT 28.06.2001 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CG1 XX BF T00126; CG-1; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 0 0 2 2 K 02 1 2 0 1 C 03 0 4 0 0 C 04 4 0 0 0 A 05 0 4 0 0 C 06 0 0 4 0 G 07 0 0 0 4 T 08 0 0 4 0 G 09 1 1 2 0 V 10 0 4 0 0 C 11 2 1 0 0 A XX BA 4 selected genomic sites XX BS TCCACGTGGC; R00210; 1; 11; 11; p. BS GCCACGTGACC; R00992; 6; 11;; p. BS GTCACGTGCCA; R01738; 4; 11;; p. BS TACACGTGGCA; R01740; 4; 11;; p. XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00441 XX ID P$GBF_Q2 XX DT 02.07.2001 (created); rge. DT 02.07.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA GBF XX BF T00316; GBF; Species: tomato, Lycopersicon esculentum. BF T01187; GBF; Species: thale cress, Arabidopsis thaliana. BF T01078; GBF1; Species: thale cress, Arabidopsis thaliana. BF T02463; GBF1; Species: maize, Zea mays. BF T02672; GBF1; Species: soybean, Glycine max. BF T02676; GBF12; Species: tomato, Lycopersicon esculentum. BF T02798; GBF1A; Species: rape, Brassica napus. BF T02799; GBF1B; Species: rape, Brassica napus. BF T01079; GBF2; Species: thale cress, Arabidopsis thaliana. BF T02674; GBF2A; Species: soybean, Glycine max. BF T02800; GBF2A; Species: rape, Brassica napus. BF T01080; GBF3; Species: thale cress, Arabidopsis thaliana. BF T02670; GBF4; Species: tomato, Lycopersicon esculentum. BF T02671; GBF9; Species: tomato, Lycopersicon esculentum. XX P0 A C G T 01 0 0 2 5 T 02 0 0 5 3 K 03 2 6 0 1 C 04 0 8 1 0 C 05 9 0 0 0 A 06 0 9 0 0 C 07 0 0 9 0 G 08 0 0 0 9 T 09 0 2 7 0 G 10 1 0 6 2 G 11 1 7 0 0 C 12 4 3 0 0 M XX BA 9 selected genomic sequences XX BS GGCCACGTCACC; R00679; 4; 12;; p. BS TTCCACGTGGCA; R01315; 2; 12;; p. BS TGACACGTGGCA; R01320; 6; 12;; p. BS GGTGACGTGGCA; R03283; 6; 12;; p. BS TGCCACGTGGAC; R03630; 6; 12;; p. BS TGCCACGTGGCC; R08437; 3; 12;; p. BS TTACACGTGTCA; R08466; 4; 12;; p. BS CCACGTCG; R08580; 1; 12; 1, 2, 11, 12; p. BS TCCACGTGTC; R08658; 1; 12; 1, 12; p. XX CC genomic binding sequences from orthologous and paralogous GBF factors XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00442 XX ID P$ABF_Q2 XX DT 02.07.2001 (created); rhe/rge. DT 02.07.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA ABF XX DE ABA binding factor XX BF T03820; ABF1; Species: thale cress, Arabidopsis thaliana. BF T03823; ABF2; Species: thale cress, Arabidopsis thaliana. BF T03824; ABF3; Species: thale cress, Arabidopsis thaliana. BF T03825; ABF4; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 7 11 16 12 N 02 3 12 20 12 N 03 0 8 32 9 G 04 8 5 30 6 G 05 23 16 0 10 M 06 0 38 10 1 C 07 47 0 2 0 A 08 1 48 0 0 C 09 0 0 49 0 G 10 0 0 0 49 T 11 0 0 49 0 G 12 0 0 43 6 G 13 2 47 0 0 C 14 18 17 8 4 N 15 8 24 11 4 C 16 11 10 22 4 N 17 22 11 10 3 N XX BA 49 selected binding sites (47 artificial and 2 genomic sites) XX BS GGACACGTGGC; R03678; 1; 17; 1, 2, 14, 15, 16, 17; p. BS GGACGCGTGGC; R09129; 1; 17; 1, 2, 14, 15, 16, 17; p. BS GGGGACACGTGGCATAC; R09244; 7; 17;; p. BS GGGGACACGTGGCGCTA; R09245; 5; 17;; p. BS CGGGACACGTGGCGCAA; R09246; 4; 17;; p. BS CGGGACACGTGGCCCAC; R09247; 4; 17;; p. BS CGGGACACGTGGCACAA; R09248; 4; 17;; p. BS ATGGACACGTGGCTAGA; R09249; 9; 17;; p. BS TCGGACACGTGGCACGA; R09250; 6; 17;; p. BS CAGGACACGTGGCACGC; R09251; 8; 17;; p. BS ATGGACACGTGGCAGAG; R09252; 10; 17;; p. BS GGTGACACGTGGCTTGA; R09253; 6; 17;; p. BS GGTGACACGTGGCGAGG; R09254; 11; 17;; p. BS GGTGACACGTGGCACGA; R09255; 10; 17;; p. BS CGCGACACGTGGCTGTT; R09256; 4; 17;; p. BS AGGAACACGTGGCCCGC; R09257; 8; 17;; p. BS CGGAACACGTGGCACGA; R09258; 10; 17;; p. BS GGGTACACGTGGCCCGA; R09259; 9; 17;; p. BS TATGACACGTGGAGGC; R09260; 13; 17; 29; p. BS TCGGACACGTGTCCCGA; R09261; 4; 17;; p. BS CGGGACACGTGTCCGAC; R09262; 11; 17;; p. BS TCTGACACGTGTCAGTC; R09263; 4; 17;; p. BS GGGCCCACGTGGCTTCC; R09264; 6; 17;; p. BS ATGGCCACGTGGCGCGA; R09265; 10; 17;; p. BS GTGGCCACGTGGCGCGA; R09266; 10; 17;; p. BS GAGGCCACGTGGCACGA; R09267; 10; 17;; p. BS GGCGCCACGTGGCCGCG; R09268; 9; 17;; p. BS ACCGCCACGTGGCCGAC; R09269; 11; 17;; p. BS ACTGCCACGTGGCACGA; R09270; 10; 17;; p. BS TTCGCCACGTGGCGACA; R09271; 12; 17;; p. BS TTGTCCACGTGGCCCAC; R09272; 7; 17;; p. BS CCGTCCACGTGGCCCGA; R09273; 10; 17;; p. BS TCTACCACGTGGCACAC; R09274; 4; 17;; p. BS GCTACCACGTGGCAAGA; R09275; 6; 17;; p. BS AGCACCACGTGGCACGA; R09276; 10; 17;; p. BS TCCATGACGTGGCGAGG; R09277; 8; 17;; p. BS TTGATGACGTGGCCACG; R09278; 8; 17;; p. BS TTCATGACGTGGCACCA; R09279; 7; 17;; p. BS TGGCTGACGTGGCACTA; R09280; 6; 17;; p. BS GTGGTGACGTGGCCGAG; R09281; 10; 17;; p. BS TCGGTGACGTGTCCCGG; R09282; 8; 17;; p. BS CTGCTGACGTGTCCCCG; R09283; 9; 17;; p. BS TGTCGACGTGGCAACT; R09284; 1; 17; 1; p. BS GGGCTTACGTGGCAGCG; R09285; 8; 17;; p. BS GCCCTGAAGTGGACAGC; R09286; 6; 17;; p. BS CCGTCCGCGTGGCAGCA; R09287; 6; 17;; p. BS GTGGTGACGTGGCCGAG; R09288; 10; 17;; p. BS GGGTACACGTGGCCCGA; R09289; 9; 17;; p. BS CGTGCCACGTGTCCTGT; R09290; 6; 17;; p. XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00443 XX ID P$O2_Q2 XX DT 02.07.2001 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Opaque2 XX BF T00668; Opaque-2; Species: maize, Zea mays. XX P0 A C G T 01 2 5 1 2 C 02 7 0 2 1 A 03 1 1 7 6 K 04 6 1 1 7 W 05 0 6 0 9 Y 06 0 6 9 0 S 07 15 0 0 0 A 08 0 10 0 2 C 09 3 0 12 0 G 10 0 0 0 15 T 11 5 4 6 0 V 12 6 0 8 1 R 13 6 0 0 4 W XX BA 15 selected genomic sites XX BS CATTCCACGTAGA; R02296; 4; 13;; p. BS CATTCCACGTAGA; R02297; 13; 13;; p. BS CATTCCACGTAGA; R02298; 13; 13;; p. BS CATTCCACGTAGA; R02299; 13; 13;; p. BS CATTCCACGTAGA; R02303; 13; 13;; p. BS GTTGACGTGA; R02934; 1; 13; 1, 2, 13; p. BS GATGACATGA; R02935; 1; 13; 1, 2, 13; p. BS GATGATGTGG; R02936; 1; 13; 1, 2, 13; p. BS GATGATATGG; R02937; 1; 13; 1, 2, 13; p. BS GATGACATGG; R02938; 1; 13; 1, 2, 13; p. BS TGGCTGA GTCAT; R08301; 9; 13; 16; p. BS TACATGACGTGTA; R08302; 5; 13;; p. BS AAGGTGA GTCAT; R08303; 2; 13; 9; p. BS GTTTCCACGTCAT; R08304; 3; 13;; p. BS AGAATGA GTCAT; R09152; 8; 13; 15; p. XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00444 XX ID V$VDR_Q3 XX DT 12.07.2001 (created); mas. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA VDR XX DE vitamin D receptor; mediates vitamin D3-signaling, often dimerizes with RXR-alpha XX BF T00885; VDR; Species: human, Homo sapiens. BF T00882; VDR; Species: rat, Rattus norvegicus. BF T00883; VDR; Species: mouse, Mus musculus. BF T00884; VDR; Species: chick, Gallus gallus. BF T01369; VDR; Species: domestic pig, Sus scrofa. XX P0 A C G T 01 1 0 11 0 G 02 3 0 9 0 G 03 0 0 9 3 G 04 0 0 5 7 K 05 3 4 4 1 N 06 8 1 1 2 A 07 5 2 5 0 R 08 2 3 4 3 N 09 4 1 6 1 R 10 4 0 7 1 R 11 1 0 11 0 G 12 0 0 9 3 G 13 4 1 1 6 W 14 0 5 6 1 S 15 8 1 1 2 A XX BA 12 genomic binding sites in 10 gene entries from 4 species XX BS GGGTGAATGAGGACA; R01188; 3; 15;; p. BS GGTTCACGAGGTTCA; R10003; 2; 15;; p. BS GAGTTCACCGGGTGT; R10005; 4; 15;; n. BS GAGTCAGCGAGGTGA; R10007; 13; 15;; n. BS GGGTGTCGGAAGCCC; R10016; 2; 15;; p. BS GGGGATGTGAGGAGA; R10017; 4; 15;; p. BS GGGTCAGGAGGGTGT; R10018; 3; 15;; p. BS GGTGGAGAGGGGTGA; R10022; 17; 15;; p. BS GGGTGAACGGGGGCA; R10026; 23; 15;; p. BS AGGGAGATTGGTTCA; R10031; 10; 15;; p. BS GAGGCAGAAGGGAGA; R10041; 1; 15;; p. BS GGTGAAAGATGTATG; R10053; 2; 15;; p. XX CC two hexameric half-sites (pos. 1-6 and 10-15) with a spacer of 3 bp; often bound by VDR as a heterodimer with RXR-alpha; absolute frequencies stated XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00445 XX ID V$XVENT1_01 XX DT 20.08.2001 (created); rio. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Xvent-1 XX DE Xenopus ventral 1 XX BF T04665; Xvent-1; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 1 3 4 0 S 02 0 3 3 2 B 03 1 3 3 1 N 04 1 5 1 1 C 05 2 0 1 5 T 06 7 0 1 0 A 07 0 0 0 8 T 08 0 1 0 7 T 09 0 1 0 7 T 10 0 0 6 2 G 11 0 3 1 4 Y 12 0 3 2 1 S 13 0 3 1 2 Y XX BA 8 selected sequences from random oligonucleotides XX BS CCTCAATTTGTGC; R10156; 4; 13;; p. BS GTCCGATTTGTTG; R10157; 4; 13;; p. BS GGGTAATTTGTGT; R10158; 2; 13;; p. BS CCGGTATTTTTCC; R10159; 5; 13;; p. BS ACAATATTTTCCC; R10160; 5; 13;; p. BS GTCCTATCCGG; R10161; 8; 13; 19, 20; p. BS GGCCTATTTGCCT; R10162; 6; 13;; p. BS CGGCTGTTTGC; R10163; 8; 13; 19, 20; p. XX CC 7 rounds of selection XX RN [1]; RE0013370. RX PUBMED: 9545242. RA Friedle H., Rastegar S., Paul H., Kaufmann E., Knoechel W. RT Xvent-1 mediates BMP-4-induced suppression of the dorsal-lip-specific early response gene XFD-1' in Xenopus embryos RL EMBO J. 17:2298-2307 (1998). XX // AC M00446 XX ID V$SPZ1_01 XX DT 21.08.2001 (created); rio. DT 21.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Spz1 XX DE spermatogenic Zip XX BF T04668; Spz1; Species: mouse, Mus musculus. XX P0 A C G T 01 6 0 9 6 D 02 4 8 7 5 N 03 10 8 4 5 N 04 0 4 26 0 G 05 0 2 28 0 G 06 12 2 11 5 R 07 0 4 26 0 G 08 0 5 25 0 G 09 2 3 20 5 G 10 10 3 0 17 W 11 13 3 4 10 W 12 6 5 6 13 N 13 5 1 12 6 N 14 3 6 9 4 N 15 4 9 7 2 N XX BA 30 sites selected from random oligonucleotides XX BS TGCGGAGGGTAT; R10171; 17; 15; 29, 30, 31; p. BS GGCGCTTATGGC; R10173; 1; 15; 1, 2, 3; p. BS GAAGGTGGTAAAGGC; R10174; 8; 15;; p. BS GGAGGGTATAAG; R10175; 1; 15; 1, 2, 3; p. BS AGGGGGGTTTGGT; R10176; 1; 15; 1, 2; p. BS GTCGGAGGGAAACGG; R10177; 11; 15;; p. BS GTCGGAGGGAACGGG; R10178; 11; 15;; p. BS AGAGGGGGGTCGG; R10179; 14; 15; 27, 28; p. BS CCGGGGTAGGGG; R10180; 1; 15; 1, 2, 3; p. BS TTTGGAGCGTTAGAC; R10181; 2; 15;; p. BS GCAGGTGCGCAGGTC; R10182; 5; 15;; p. BS GAGGGAGGGTAGTGA; R10183; 1; 15;; p. BS ACCCGAGGAACTACA; R10184; 13; 15;; p. BS AGGAGGGTATTGC; R10185; 1; 15; 1, 2; p. BS GGGGGGGGCCTCT; R10186; 13; 15; 26, 27; p. BS GCAGGAGGATTTACT; R10187; 3; 15;; p. BS GCCGGAGGGATAGTG; R10188; 3; 15;; p. BS AATGGGGCGCCG; R10189; 17; 15; 29, 30, 31; p. BS AGGTGGGTTCGCG; R10190; 1; 15; 1, 2; p. BS TCGCGGGGGTTT; R10191; 15; 15; 27, 28, 29; p. BS AGAGGAGGGATT; R10192; 15; 15; 27, 28, 29; p. BS TGGGGGCGCTTCATC; R10193; 8; 15;; p. BS TCAGCGGGCATCACC; R10194; 11; 15;; p. BS AGCGGTGCTAGA; R10195; 13; 15; 25, 26, 27; p. BS GTTGGCGGGAATGAG; R10196; 10; 15;; p. BS TTAGGTGGGTGAGTC; R10197; 7; 15;; p. BS AACGGGGGGTAT; R10198; 15; 15; 27, 28, 29; p. BS CTGGGCGTTGTTCA; R10199; 1; 15; 1; p. BS GCCGACGGAAGTGC; R10200; 1; 15; 1; p. BS CTGGGCGTTGTTCA; R10201; 1; 15; 1; p. XX CC immunoprecipitated Spz1 protein from LFG6 cells (Leydig cell line) used for EMSA [1] XX RN [1]; RE0016747. RX PUBMED: 11165476. RA Hsu S. H., Shyu H. W., Hsieh-Li H. M., Li H. RT Spz1, a novel bHLH-Zip protein, is specifically expressed in testis RL Mech. Dev. 100:177-187 (2001). XX // AC M00447 XX ID V$AR_Q2 XX DT 22.08.2001 (created); mas. DT 07.12.2001 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA AR XX DE androgen receptor XX BF T00040; AR; Species: human, Homo sapiens. BF T00041; AR; Species: mouse, Mus musculus. BF T00042; AR; Species: rat, Rattus norvegicus. BF T04652; AR; Species: baboon, Papio hamadryas. BF T04653; AR; Species: chimpanzee, Pan troglodytes. BF T04654; AR; Species: macaque, Macaca fascicularis. BF T04655; AR; Species: lemur, Eulemur fulvus collaris. XX P0 A C G T 01 6 0 1 0 A 02 1 0 6 0 G 03 3 0 0 4 W 04 5 0 2 0 A 05 0 5 2 0 C 06 4 1 1 1 A 07 0 1 1 5 T 08 1 1 3 2 N 09 3 1 0 3 W 10 2 0 0 5 T 11 0 0 7 0 G 12 0 0 0 7 T 13 2 0 0 5 T 14 0 7 0 0 C 15 1 0 0 6 T XX BA 7 genomic binding sites XX BS AGTACGTGATGTTCT; R03286; 1; 15;; p. BS AGTAGCTTTTGTTCT; R10144; 1; 15;; p. BS AGTAGATTCTGTTCT; R10148; 1; 15;; p. BS GGTACATCTTGTTCA; R10149; 1; 15;; p. BS AGAGCAGGAAGTACT; R10150; 1; 15;; p. BS AAAACTCATTGTTCT; R10151; 1; 15;; p. BS AGAGCATGAAGTACT; R10152; 1; 15;; p. XX CC inverted repeat of two hexameric half-sites (pos. 1-6, pos. 10-15) with a spacer of 3 bp; absolute frequencies stated XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00448 XX ID V$ZIC1_01 XX DT 22.08.2001 (created); rio. DT 22.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Zic1 XX DE zinc finger protein of the cerebellum 1 XX BF T04669; Zic1; Species: mouse, Mus musculus. XX P0 A C G T 01 1 6 10 13 K 02 6 3 20 1 G 03 2 2 24 2 G 04 2 4 19 5 G 05 2 2 6 20 T 06 4 5 17 4 G 07 3 3 24 0 G 08 1 5 4 20 T 09 5 20 3 2 C XX BA 30 sites selected from random oligonucleotides XX BS GCGGTGGTC; R10230; 1; 9;; p. BS CGGGTTGTC; R10231; 1; 9;; p. BS TGGCTTGTC; R10232; 1; 9;; p. BS TGGGTAGTG; R10233; 1; 9;; p. BS GGTGTGGCC; R10234; 1; 9;; p. BS TGGTTTATC; R10235; 1; 9;; p. BS GGGGGGGTA; R10236; 1; 9;; p. BS CGGGGAGTC; R10237; 1; 9;; p. BS TAAGTCGTC; R10238; 1; 9;; p. BS TCGTTGGAC; R10239; 1; 9;; p. BS TACGCGGTC; R10240; 1; 9;; p. BS TGGGGAGTA; R10241; 1; 9;; p. BS TGGGTGCCA; R10242; 1; 9;; p. BS GCGGTGATC; R10243; 1; 9;; p. BS TGGGTTCCC; R10244; 1; 9;; p. BS TGCGGGGGC; R10245; 1; 9;; p. BS GGGGGGGTA; R10246; 1; 9;; p. BS AGGTTCGTC; R10247; 1; 9;; p. BS TGGGTGCGG; R10248; 1; 9;; p. BS GGGATGGCC; R10249; 1; 9;; p. BS CAGCTGGTC; R10250; 1; 9;; p. BS TATTTGGTT; R10251; 1; 9;; p. BS GGGTGCGTC; R10252; 1; 9;; p. BS GAGGAGGGC; R10253; 1; 9;; p. BS CGGGTGAGG; R10254; 1; 9;; p. BS GAGGTGGTC; R10255; 1; 9;; p. BS CGACAGGTC; R10256; 1; 9;; p. BS CGGATCGTT; R10257; 1; 9;; p. BS GGGGCAGTA; R10258; 1; 9;; p. BS TTGCTCGCC; R10259; 1; 9;; p. XX CC 4 rounds of selection XX RN [1]; RE0016752. RX PUBMED: 11053430. RA Mizugishi K., Aruga J., Nakata K., Mikoshiba K. RT Molecular properties of Zic proteins as transcriptional regulators and their relationship to GLI proteins RL J. Biol. Chem. 276:2180-2188 (2001). XX // AC M00449 XX ID V$ZIC2_01 XX DT 22.08.2001 (created); rio. DT 22.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Zic2 XX DE zinc finger protein of the cerebellum 2 XX BF T04237; ZIC2; Species: human, Homo sapiens. BF T04670; Zic2; Species: mouse, Mus musculus. XX P0 A C G T 01 6 1 13 10 K 02 3 3 20 4 G 03 3 3 22 2 G 04 3 2 22 3 G 05 3 3 5 19 T 06 4 2 21 3 G 07 3 4 21 2 G 08 1 2 3 24 T 09 3 17 6 4 C XX BA 30 sites selected from random oligonucleotides XX BS GGGGTGCTC; R10260; 1; 9;; p. BS GGGGTAGTC; R10261; 1; 9;; p. BS TCGGTGGTT; R10262; 1; 9;; p. BS AGGGTGGGC; R10263; 1; 9;; p. BS AGGTTCGTC; R10264; 1; 9;; p. BS CACGTGGTC; R10265; 1; 9;; p. BS TGGGGGGGC; R10266; 1; 9;; p. BS GGAGTAGTC; R10267; 1; 9;; p. BS GGGGGGGGC; R10268; 1; 9;; p. BS TGGTTGCTG; R10269; 1; 9;; p. BS GGGGTGTTG; R10270; 1; 9;; p. BS TGTCTGGTG; R10271; 1; 9;; p. BS TAGAGGGTC; R10272; 1; 9;; p. BS GGGGCAGTC; R10273; 1; 9;; p. BS AGGGTGGAA; R10274; 1; 9;; p. BS TAGGTTGCC; R10275; 1; 9;; p. BS TTCGTGGTG; R10276; 1; 9;; p. BS TTGGTATTC; R10277; 1; 9;; p. BS AGGAAGGTC; R10278; 1; 9;; p. BS GGGGGGGTT; R10279; 1; 9;; p. BS GGGGGGGTA; R10280; 1; 9;; p. BS GTGATGCTC; R10281; 1; 9;; p. BS GGGGAGATA; R10282; 1; 9;; p. BS ATTGTGATC; R10283; 1; 9;; p. BS ACGGTGCTT; R10284; 1; 9;; p. BS TCAGTCGTG; R10285; 1; 9;; p. BS GGGCCGGTG; R10286; 1; 9;; p. BS GGGTTTGCC; R10287; 1; 9;; p. BS GGCGAGGTT; R10288; 1; 9;; p. BS TGAGCTATC; R10289; 1; 9;; p. XX CC 4 rounds of selection XX RN [1]; RE0016752. RX PUBMED: 11053430. RA Mizugishi K., Aruga J., Nakata K., Mikoshiba K. RT Molecular properties of Zic proteins as transcriptional regulators and their relationship to GLI proteins RL J. Biol. Chem. 276:2180-2188 (2001). XX // AC M00450 XX ID V$ZIC3_01 XX DT 22.08.2001 (created); rio. DT 22.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Zic3 XX DE zinc finger protein of the cerebellum 3 XX BF T04671; Zic3; Species: mouse, Mus musculus. XX P0 A C G T 01 6 9 5 15 N 02 3 1 31 0 G 03 1 1 29 4 G 04 2 2 29 2 G 05 5 1 10 19 K 06 5 4 23 3 G 07 6 6 19 4 G 08 3 7 3 22 T 09 3 22 5 5 C XX BA 35 sites selected from random oligonucleotides XX BS GAGGTGGTC; R10290; 1; 9;; p. BS TGTGTTGTC; R10291; 1; 9;; p. BS TGGGTAGTT; R10292; 1; 9;; p. BS TGGGTGCCC; R10293; 1; 9;; p. BS CGGGGGGTC; R10294; 1; 9;; p. BS CGGGTGGTT; R10295; 1; 9;; p. BS CAGGTGGTG; R10296; 1; 9;; p. BS TGTGTGGTG; R10297; 1; 9;; p. BS TGTGTGATC; R10298; 1; 9;; p. BS CGGGTGACC; R10299; 1; 9;; p. BS TGGGGACTC; R10300; 1; 9;; p. BS TGGGTGCCG; R10301; 1; 9;; p. BS CGGGAGTTC; R10302; 1; 9;; p. BS CGGGAGGTT; R10303; 1; 9;; p. BS CAGCTGGTC; R10304; 1; 9;; p. BS TGGGTAATA; R10305; 1; 9;; p. BS GGGGGGGTG; R10306; 1; 9;; p. BS TGCATGGTG; R10307; 1; 9;; p. BS CGGGAGGCC; R10308; 1; 9;; p. BS TGGGGGAGC; R10309; 1; 9;; p. BS GGGGGGGTA; R10310; 1; 9;; p. BS AGGGGGGCC; R10311; 1; 9;; p. BS GGGGTCCTC; R10312; 1; 9;; p. BS GGGGTTGGC; R10313; 1; 9;; p. BS TGGGTCCTT; R10314; 1; 9;; p. BS AGGGAGTTC; R10315; 1; 9;; p. BS ACGGGAGTC; R10316; 1; 9;; p. BS AGGGTTGGA; R10317; 1; 9;; p. BS AGGTCGCTC; R10318; 1; 9;; p. BS TGGGTAACT; R10319; 1; 9;; p. BS TGGGGCACC; R10320; 1; 9;; p. BS TGGCGGTAC; R10321; 1; 9;; p. BS TGTATGTAC; R10322; 1; 9;; p. BS AGAGGCGTC; R10323; 1; 9;; p. BS CGGTAGGAC; R10324; 1; 9;; p. XX CC 4 rounds of selection XX RN [1]; RE0016752. RX PUBMED: 11053430. RA Mizugishi K., Aruga J., Nakata K., Mikoshiba K. RT Molecular properties of Zic proteins as transcriptional regulators and their relationship to GLI proteins RL J. Biol. Chem. 276:2180-2188 (2001). XX // AC M00451 XX ID V$NKX3A_01 XX DT 23.08.2001 (created); rio. DT 23.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA NKX3A XX DE NK class homeobox factor 3A XX BF T04255; Nkx3-1; Species: human, Homo sapiens. BF T04256; Nkx3-1; Species: mouse, Mus musculus. BF T04287; Nkx3-1 v1; Species: human, Homo sapiens. BF T04288; Nkx3-1 v2; Species: human, Homo sapiens. BF T04289; Nkx3-1 v3; Species: human, Homo sapiens. BF T04290; Nkx3-1 v4; Species: human, Homo sapiens. XX P0 A C G T 01 5 4 4 5 N 02 8 1 1 8 W 03 11 1 1 5 A 04 1 1 0 17 T 05 18 0 0 1 A 06 18 1 0 0 A 07 0 0 18 1 G 08 0 0 0 19 T 09 17 0 2 0 A 10 3 3 0 13 T 11 10 0 3 6 W 12 4 3 2 10 T XX BA 19 sites selected from random oligonucleotides XX BS TATTAAGTATTT; R10331; 3; 12;; p. BS GATTAAGTATGC; R10332; 6; 12;; p. BS ATATAAGTACGA; R10333; 6; 12;; p. BS TAATAAGTACAT; R10334; 3; 12;; p. BS CGTTAAGTGTTT; R10335; 2; 12;; p. BS TCGTAAGTATTA; R10336; 1; 12;; p. BS CTATAAGTAATG; R10337; 1; 12;; p. BS CTTTAAGTAATA; R10338; 2; 12;; p. BS AAACAAGTAAAC; R10339; 2; 12;; p. BS CTATAAGTATAT; R10340; 1; 12;; p. BS TACTAATTATAT; R10341; 3; 12;; p. BS GTATAAGTATAT; R10342; 1; 12;; p. BS ATCGTATAT; R10343; 1; 12; 1, 2, 3; p. BS ATATAAGTATAT; R10344; 3; 12;; p. BS AAATAAGTATTA; R10345; 2; 12;; p. BS GTATAAGTATGT; R10346; 1; 12;; p. BS TAATAAGTATAT; R10347; 3; 12;; p. BS ATATAAGTATAC; R10348; 5; 12;; p. BS GATTAAGTGCAG; R10349; 2; 12;; p. XX CC 5 rounds of selection XX RN [1]; RE0016763. RX PUBMED: 10871372. RA Steadman D. J., Giuffrida D., Gelmann E. P. RT DNA-binding sequence of the human prostate-specific homeodomain protein NKX3.1 RL Nucleic Acids Res. 28:2389-2395 (2000). XX // AC M00453 XX ID V$IRF7_01 XX DT 23.08.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA IRF-7 XX DE interferon regulatory factor 7 XX BF T04674; IRF-7A; Species: human, Homo sapiens. XX P0 A C G T 01 1 1 1 4 T 02 3 1 2 1 N 03 1 4 6 0 S 04 3 2 22 1 G 05 26 0 2 0 A 06 28 0 0 0 A 07 17 0 0 11 W 08 4 5 6 13 N 09 0 16 4 8 C 10 2 1 24 1 G 11 27 0 0 1 A 12 26 2 0 0 A 13 19 1 3 5 A 14 5 6 10 7 N 15 3 7 1 16 T 16 3 5 8 9 N 17 7 3 10 5 N 18 5 8 9 3 N XX BA 28 sites selected from random oligonucleotides XX BS TGGCAAACGAAAGT; R10367; 16; 18; 30, 31, 32, 33; p. BS GGAAACTAACAGCTTG; R10368; 1; 18; 1, 2; p. BS GAAAGTGAACGCAAG; R10369; 1; 18; 1, 2, 3; p. BS GAGAATGGAAAGATGC; R10370; 1; 18; 1, 2; p. BS AGGAAAAGCGAAAGTGGG; R10371; 3; 18;; p. BS GAATTCGAAAATGGA; R10372; 1; 18; 1, 2, 3; p. BS GAAAATGAAACTCTA; R10373; 1; 18; 1, 2, 3; p. BS TACGAAACCGAATTC; R10374; 14; 18; 29, 30, 31; p. BS GAAAATCCAATTACGC; R10375; 1; 18; 1, 2; p. BS GAATTCGAAAATCTG; R10376; 1; 18; 1, 2, 3; p. BS GAATTCGAAACTGCA; R10377; 1; 18; 1, 2, 3; p. BS GACGAAACTGAAACAGTG; R10378; 1; 18;; p. BS CACTAAAACGAATGT; R10379; 16; 18; 31, 32, 33; p. BS TTACAATCCGAAATCGCG; R10380; 6; 18;; p. BS TCCGAAATGGAAAACAGC; R10381; 11; 18;; p. BS GAAAGTTAAGATGCT; R10382; 1; 18; 1, 2, 3; p. BS GAAAGTGAATGTTGC; R10383; 1; 18; 1, 2, 3; p. BS GAATTCGAAATGAAC; R10384; 1; 18; 1, 2, 3; p. BS GAATTCGAAACTCGT; R10385; 1; 18; 1, 2, 3; p. BS GAATTCGAATGTGGA; R10386; 1; 18; 1, 2, 3; p. BS GAATTCGACGTTTAC; R10387; 1; 18; 1, 2, 3; p. BS GAATTCGAAAGTCGA; R10388; 1; 18; 1, 2, 3; p. BS GGAAACGAAAATTAC; R10389; 1; 18; 1, 2, 3; p. BS GAAAGTGTAACCTTT; R10390; 1; 18; 1, 2, 3; p. BS GAATTCGAAAGTTAG; R10391; 1; 18; 1, 2, 3; p. BS GAATTCGAAAGTTAG; R10392; 1; 18; 1, 2, 3; p. BS GGAAAGTGAAATCGAC; R10393; 1; 18; 1, 2; p. BS GAAAAGGAAACTTGG; R10394; 1; 18; 1, 2, 3; p. XX CC 5 rounds of selection XX RN [1]; RE0016765. RX PUBMED: 10938111. RA Lin R., Genin P., Mamane Y., Hiscott J. RT Selective DNA binding and association with the CREB binding protein coactivator contribute to differential activation of alpha/beta interferon genes by interferon regulatory factors 3 and 7 RL Mol. Cell. Biol. 20:6342-6353 (2000). XX // AC M00454 XX ID V$MRF2_01 XX DT 24.08.2001 (created); rio. DT 04.12.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA MRF-2 XX DE modulator recognition factor 2 XX BF T04675; MRF-2; Species: human, Homo sapiens. XX P0 A C G T 01 3 1 1 0 A 02 3 0 0 2 W 03 0 3 2 1 S 04 1 9 2 3 C 05 10 2 1 2 A 06 1 10 2 2 C 07 15 0 0 0 A 08 15 0 0 0 A 09 0 1 1 13 T 10 14 1 0 0 A 11 0 11 1 3 C 12 4 7 1 3 N 13 7 4 4 0 V 14 9 4 2 0 A XX BA 15 sites selected from random oligonucleotides XX BS CACAATACCAA; R10396; 1; 14; 1, 2, 3; p. BS CACAATACCGC; R10397; 1; 14; 1, 2, 3; p. BS CACAATACCGA; R10398; 1; 14; 1, 2, 3; p. BS CACAATACGAG; R10399; 1; 14; 1, 2, 3; p. BS CGCCAATACACA; R10400; 1; 14; 1, 2; p. BS AACCAAAATACACA; R10401; 1; 14;; p. BS CAGAATACCAA; R10402; 1; 14; 1, 2, 3; p. BS CACAATATTGC; R10403; 1; 14; 1, 2, 3; p. BS CACAATATAAC; R10404; 1; 14; 1, 2, 3; p. BS CAGTTGAATACCAA; R10405; 2; 14;; p. BS TGTAATACCAC; R10406; 1; 14; 1, 2, 3; p. BS ATGTCCAATAGTCG; R10407; 1; 14;; p. BS CACAATACCAA; R10408; 1; 14; 1, 2, 3; p. BS GATATCAACACACA; R10409; 1; 14;; p. BS ATCGATAAGCTTGA; R10410; 6; 14;; p. XX CC 6 rounds of selection XX RN [1]; RE0016766. RX PUBMED: 10329386. RA Whitson R. H., Huang T., Itakura K. RT The novel Mrf-2 DNA-binding domain recognizes a five-base core sequence through major and minor-groove contacts RL Biochem. Biophys. Res. Commun. 258:326-331 (1999). XX // AC M00455 XX ID I$DRI_01 XX DT 27.08.2001 (created); rio. DT 27.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA dri XX DE dead ringer XX BF T04679; dri; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 9 7 7 19 N 02 9 15 7 11 N 03 21 0 21 0 R 04 42 0 0 0 A 05 1 0 0 41 T 06 1 0 0 41 T 07 37 0 5 0 A 08 28 5 6 3 A 09 9 5 6 22 T 10 12 11 10 9 N XX BA 42 sites selected from random oligonucleotides XX BS TTGATTAGCC; R10411; 12; 10;; p. BS TAGATTATTG; R10412; 20; 10;; p. BS CGAATTACAT; R10413; 12; 10;; p. BS TCAATTAATA; R10414; 3; 10;; p. BS ATGATTAAAT; R10415; 18; 10;; p. BS TTGATTAATT; R10416; 12; 10;; p. BS TCAATTAATA; R10417; 3; 10;; p. BS TCAATTAACA; R10418; 14; 10;; p. BS TGAATTAATT; R10419; 12; 10;; p. BS GAGATTAATT; R10420; 7; 10;; p. BS AGGATTAATC; R10421; 4; 10;; p. BS CTGATTACGA; R10422; 14; 10;; p. BS TCAATTAGAC; R10423; 3; 10;; p. BS CAGATTATGC; R10424; 15; 10;; p. BS GCGATTAAAT; R10425; 13; 10;; p. BS TAAATTAGAA; R10426; 7; 10;; p. BS GCGATTAAAA; R10427; 11; 10;; p. BS TCAATTAAGA; R10428; 3; 10;; p. BS AAAATTAGTG; R10429; 11; 10;; p. BS AAGATTAATC; R10430; 9; 10;; p. BS TTGATTGATG; R10431; 23; 10;; p. BS TCAATTAGAC; R10432; 3; 10;; p. BS ACAATTAATA; R10433; 12; 10;; p. BS ATGATTAATG; R10434; 7; 10;; p. BS TTGATTGATG; R10435; 23; 10;; p. BS GCAAATAAGA; R10436; 6; 10;; p. BS GGAATTAATC; R10437; 5; 10;; p. BS AGGATTAATC; R10438; 12; 10;; p. BS GAGATTATGA; R10439; 10; 10;; p. BS TCAATTAGTA; R10440; 3; 10;; p. BS TCAATTAATC; R10441; 9; 10;; p. BS ATAATTAATG; R10442; 16; 10;; p. BS TCGATTACGT; R10443; 11; 10;; p. BS CAAATTGATG; R10444; 23; 10;; p. BS CGAATTACAT; R10445; 12; 10;; p. BS CAAATTACAA; R10446; 4; 10;; p. BS GCGATTGATG; R10447; 23; 10;; p. BS ATGATAAACT; R10448; 6; 10;; p. BS CGGATTAACC; R10449; 12; 10;; p. BS TTAATTAATC; R10450; 8; 10;; p. BS TTGATTGATG; R10451; 23; 10;; p. BS TCAATTAACG; R10452; 3; 10;; p. XX CC 8 rounds of selection XX RN [1]; RE0012299. RX PUBMED: 8622680. RA Gregory S. L., Kortschak R. D., Kalionis B., Staint R. RT Characterization of the dead ringer gene identifies a novel, highly conserved family of sequence-specific DNA-binding proteins RL Mol. Cell. Biol. 16:792-799 (1996). XX // AC M00456 XX ID V$FAC1_01 XX DT 27.08.2001 (created); rio. DT 27.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA FAC1 XX DE fetal Alz-50 clone 1 XX BF T04682; FAC1; Species: human, Homo sapiens. XX P0 A C G T 01 10 4 8 2 N 02 8 8 4 4 N 03 7 9 5 3 N 04 6 15 2 1 C 05 19 1 2 2 A 06 8 12 0 4 M 07 22 1 1 0 A 08 22 1 0 1 A 09 4 16 3 1 C 10 18 4 1 1 A 11 6 13 1 4 C 12 10 3 9 2 R 13 6 6 4 8 N 14 13 2 4 5 A XX BA 24 sites selected from random oligonucleotides XX BS GCTCACAACACGAA; R10453; 9; 14;; p. BS TGCCACAACACAAG; R10454; 9; 14;; p. BS CAGCACAACAAACG; R10455; 9; 14;; p. BS CTGCACAACAAAAA; R10456; 6; 14;; p. BS CCATACAACACGTA; R10457; 9; 14;; p. BS ATCAAAAACACGTA; R10458; 9; 14;; p. BS GGACTCAACCCGTA; R10459; 9; 14;; p. BS ATACAAACCACACA; R10460; 9; 14;; p. BS GCTACCAACACAAA; R10461; 5; 14;; p. BS GCTGACAACAATCA; R10462; 5; 14;; p. BS AACCACCAGACAAG; R10463; 9; 14;; p. BS GGCCAAGACAGCAG; R10464; 9; 14;; p. BS GCGAGAAACACACC; R10465; 9; 14;; p. BS AACGAAAACAAGTA; R10466; 9; 14;; p. BS ACCCTTAACATAGT; R10467; 9; 14;; p. BS GCACACAAGCATGT; R10468; 9; 14;; p. BS CCCCACAAGGTACT; R10469; 9; 14;; p. BS AAGCAAAAACCGTA; R10470; 9; 14;; p. BS AAAAATAACATCGT; R10471; 9; 14;; p. BS GTCCGTAATTCACC; R10472; 9; 14;; p. BS AAAAAAAAAACGTA; R10473; 9; 14;; p. BS AAAAATAACATCGT; R10474; 9; 14;; p. BS TGCCACATAAAGTA; R10475; 9; 14;; p. BS AAGCAAAAACCGTA; R10476; 9; 14;; p. XX RN [1]; RE0016781. RX PUBMED: 10575013. RA Jordan-Sciutto K. L., Dragich J. M., Rhodes J. L., Bowser R. RT Fetal Alz-50 clone 1, a novel zinc finger protein, binds a specific DNA sequence and acts as a transcriptional regulator. RL J. Biol. Chem. 274:35262-35268 (1999). XX // AC M00457 XX ID V$STAT5A_01 XX DT 27.08.2001 (created); rio. DT 28.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA STAT5A (homodimer) XX DE signal transducer and activator of transcription 5a XX BF T04683; STAT5A; Species: human, Homo sapiens. BF T01579; STAT5A; Species: mouse, Mus musculus. BF T01578; STAT5A; Species: sheep, Ovis aries. XX P0 A C G T 01 7 6 8 7 N 02 18 2 7 3 A 03 14 4 4 11 W 04 0 0 0 33 T 05 0 1 0 32 T 06 0 32 1 0 C 07 0 15 6 12 Y 08 10 6 8 9 N 09 8 0 25 0 G 10 0 0 33 0 G 11 33 0 0 0 A 12 33 0 0 0 A 13 13 7 4 8 N 14 2 11 0 19 Y 15 8 8 6 8 N XX BA 33 sites selected from random oligonucleotides XX BS CTTCCAGGAAATT; R10477; 1; 15; 1, 2; p. BS GTTCGAGGAAATC; R10478; 1; 15; 1, 2; p. BS TTTCCAGGAACTT; R10479; 1; 15; 1, 2; p. BS GATTCCAGGAAACA; R10480; 1; 15; 1; p. BS GTTTCTTGGAAGCT; R10481; 1; 15; 1; p. BS CAGTTCGTGGAAAAA; R10482; 1; 15;; p. BS GACTTCTCGGAATTC; R10483; 1; 15;; p. BS GAATTCGGGGAAACG; R10484; 2; 15;; p. BS GAATTCTGGGAAACA; R10485; 3; 15;; p. BS AATTTCTTAGAACTG; R10486; 4; 15;; p. BS CGATTCCAGGAATAT; R10487; 4; 15;; p. BS TCTTTCCCGGAAATA; R10488; 5; 15;; p. BS GAATTCTCAGAAGTC; R10489; 5; 15;; p. BS AAGTTCCCGGAATTA; R10490; 5; 15;; p. BS AAATTCCAGGAAATC; R10491; 6; 15;; p. BS TAATTCCTAGAATCA; R10492; 7; 15;; p. BS AGATTCTCGGAAGTG; R10493; 7; 15;; p. BS AAATTCCGGGAACTA; R10494; 7; 15;; p. BS CAATTCCGAGAATCT; R10495; 7; 15;; p. BS TGTTTCGGGGAAACG; R10496; 8; 15;; p. BS AATTTCTCGGAATTA; R10497; 8; 15;; p. BS TTCTCGGAAGAAGCT; R10498; 12; 15;; p. BS GAATTCTAAGAACTC; R10499; 10; 15;; p. BS GAATTCTGGGAAATC; R10500; 10; 15;; p. BS CTCTTCCAGGAAATC; R10501; 11; 15;; p. BS TGATTCCTGGAAACC; R10502; 11; 15;; p. BS TATTTCCTAGAACTT; R10503; 12; 15;; p. BS GTTTTCCAGGAACCG; R10504; 12; 15;; p. BS AATTTCGTGGAATCG; R10505; 12; 15;; p. BS CATTTCTGAGAACTT; R10506; 12; 15;; p. BS TATTTCCTGGAAAT; R10507; 13; 15; 27; p. BS GGATTCTGGGAATT; R10508; 13; 15; 27; p. BS CCGTTCTTGGAA; R10509; 15; 15; 27, 28, 29; p. XX CC 4 rounds of selection; STAT5A homodimer binding XX RN [1]; RE0016782. RX PUBMED: 10594041. RA Soldaini E., John S., Moro S., Bollenbacher J., Schindler U., Leonard W. J. RT DNA binding site selection of dimeric and tetrameric Stat5 proteins reveals a large repertoire of divergent tetrameric Stat5a binding sites. RL Mol. Cell. Biol. 20:389-401 (2000). XX // AC M00459 XX ID V$STAT5B_01 XX DT 28.08.2001 (created); rio. DT 28.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA STAT5B (homodimer) XX DE signal transducer and activator of transcription 5b XX BF T01578; STAT5A; Species: sheep, Ovis aries. BF T04684; STAT5B; Species: human, Homo sapiens. BF T00944; STAT5B; Species: mouse, Mus musculus. BF T04761; STAT5B; Species: rat, Rattus norvegicus. XX P0 A C G T 01 9 6 14 11 N 02 24 2 8 8 A 03 16 1 3 26 W 04 0 0 0 46 T 05 0 0 0 46 T 06 0 46 0 0 C 07 0 28 1 17 Y 08 7 11 8 20 N 09 10 2 34 0 G 10 0 0 46 0 G 11 46 0 0 0 A 12 46 0 0 0 A 13 17 5 5 19 W 14 8 10 1 27 T 15 8 11 7 17 N XX BA 46 sites selected from random oligonucleotides XX BS TTTCCGGGAAATT; R10510; 1; 15; 1, 2; p. BS TTTCCAAGAATCC; R10511; 1; 15; 1, 2; p. BS TTTCCTGGAAACA; R10512; 1; 15; 1, 2; p. BS GTTCTTAGAATTC; R10513; 1; 15; 1, 2; p. BS ATTTCCAAGAATTG; R10514; 1; 15; 1; p. BS AATTCTCGGAAATG; R10515; 1; 15; 1; p. BS TTTTTCCGGGAAATT; R10516; 1; 15;; p. BS CGATTCCCGGAATAG; R10517; 1; 15;; p. BS CGATTCCTGGAAACA; R10518; 1; 15;; p. BS CGTTTCCGGGAATTC; R10519; 2; 15;; p. BS TATTTCTTGGAAGTG; R10520; 3; 15;; p. BS TGGTTCCCGGAAATA; R10521; 3; 15;; p. BS TTTTTCTCGGAACTT; R10522; 3; 15;; p. BS ATATTCTTAGAATTC; R10523; 3; 15;; p. BS CGATTCCGGGAAATT; R10524; 4; 15;; p. BS TGATTCCTGGAAAAA; R10525; 5; 15;; p. BS GATTTCTGGGAAAAA; R10526; 6; 15;; p. BS TATTTCCAAGAAACG; R10527; 6; 15;; p. BS GGTTTCTAGGAATTC; R10528; 6; 15;; p. BS GTTTTCCGGGAACTT; R10529; 7; 15;; p. BS AAATTCTCGGAAGAT; R10530; 7; 15;; p. BS AAATTCTTGGAATCC; R10531; 7; 15;; p. BS GGTTTCTCGGAATTC; R10532; 7; 15;; p. BS TTTTTCCGCGAATTT; R10533; 8; 15;; p. BS GAATTCCTAGAAATT; R10534; 8; 15;; p. BS TAATTCCCGGAAAGT; R10535; 8; 15;; p. BS AAATTCGTGGAATTC; R10536; 9; 15;; p. BS AATTTCCTGGAAACA; R10537; 9; 15;; p. BS AATTTCCTGGAATCC; R10538; 9; 15;; p. BS ATTTTCCAGGAACTT; R10539; 9; 15;; p. BS TTTTTCTAGGAATTG; R10540; 10; 15;; p. BS AATTTCCGAGAATCT; R10541; 11; 15;; p. BS GAATTCCTGGAAGAC; R10542; 11; 15;; p. BS GCCTTCTCGGAATTT; R10543; 11; 15;; p. BS TCTTTCCCGGAATTT; R10544; 11; 15;; p. BS GAATTCCACGAAACA; R10545; 11; 15;; p. BS GATTTCTTAGAATTA; R10546; 11; 15;; p. BS TATTTCTTGGAATAT; R10547; 12; 15;; p. BS GATTTCCCAGAAATT; R10548; 12; 15;; p. BS GAATTCTTAGAAATT; R10549; 12; 15;; p. BS GAATTCCCGGAATTT; R10550; 12; 15;; p. BS AAGTTCCTGGAAGCC; R10551; 12; 15;; p. BS GATTTCTTGGAAGAG; R10552; 12; 15;; p. BS CAATTCCTGGAAAA; R10553; 13; 15; 27; p. BS CTTTTCCTGGAACT; R10554; 13; 15; 27; p. BS GATTTCTTGGAACT; R10555; 13; 15; 27; p. XX CC 4 rounds of selection; STAT5B homodimer binding XX RN [1]; RE0016782. RX PUBMED: 10594041. RA Soldaini E., John S., Moro S., Bollenbacher J., Schindler U., Leonard W. J. RT DNA binding site selection of dimeric and tetrameric Stat5 proteins reveals a large repertoire of divergent tetrameric Stat5a binding sites. RL Mol. Cell. Biol. 20:389-401 (2000). XX // AC M00460 XX ID V$STAT5A_02 XX DT 28.08.2001 (created); rio. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT5A (homotetramer) XX BF T04683; STAT5A; Species: human, Homo sapiens. BF T01579; STAT5A; Species: mouse, Mus musculus. BF T01578; STAT5A; Species: sheep, Ovis aries. XX P0 A C G T 01 1 1 0 35 T 02 6 1 1 29 T 03 2 35 0 0 C 04 2 19 9 7 C 05 8 16 6 7 N 06 15 5 14 3 R 07 1 0 35 1 G 08 30 0 2 5 A 09 36 0 1 0 A 10 11 7 4 15 N 11 6 8 7 16 N 12 6 9 11 9 N 13 6 14 10 7 N 14 7 8 12 10 N 15 10 7 8 12 N 16 1 3 0 33 T 17 10 2 2 23 T 18 4 31 0 2 C 19 4 23 6 4 C 20 8 8 10 11 N 21 13 9 11 4 N 22 6 3 26 2 G 23 18 3 11 5 R 24 16 3 18 0 R XX BA 37 sites selected from random oligonucleotides XX BS TTCCAGGAATT TTACAAACTGAA; R10556; 9; 24; 20; p. BS TTCCGAGAAAA CCCTTCCTGAGG; R10557; 14; 24; 25; p. BS TTCCACGAAATGAGCTTTATCGAA; R10558; 7; 24;; p. BS TTCTGAGAATTCTAGTGCGCAGAA; R10559; 7; 24;; p. BS TTCCGGGAACCGATATCCCTCGGA; R10560; 7; 24;; p. BS TTCCCGGAATACACGCCCGGAGCA; R10561; 7; 24;; p. BS TTCGTGGAATCGTGGCACTATGAA; R10562; 8; 24;; p. BS TTCCCAGAATCGCGATAATTAGGA; R10563; 11; 24;; p. BS TTCGCTGAAATTGGCTTCCTCGAG; R10564; 12; 24;; p. BS TTCCAAGAATTTCCATTCCGAGGC; R10565; 14; 24;; p. BS TTCCGGGAATAAGAGTTCTCGACA; R10566; 14; 24;; p. BS TTCCTGGAAGGTCTTTTCCGACAG; R10567; 15; 24;; p. BS TTCGCAGAATCTGATTACGAGGCC; R10568; 15; 24;; p. BS TTCCCCGAAGTCCTTTTCGACAGG; R10569; 16; 24;; p. BS TTCCTAGAAATTCTCTTCGACAGG; R10570; 16; 24;; p. BS CTCTCGGAACCTGGATTCCGTGTG; R10571; 7; 24;; p. BS TTCGCAGTATTACGGTACCACGGA; R10572; 7; 24;; p. BS TGCCCCGAACCTTGATTCCGACTA; R10573; 8; 24;; p. BS TACCACGAATGCGCTTTCCGTGGA; R10574; 8; 24;; p. BS TTCCTGGTATCCTCTAGTCCAGAA; R10575; 8; 24;; p. BS TACAGAGAACTACCGTAACGGGAA; R10576; 9; 24;; p. BS TTCTAAGGACTCTCTTTCCTGGTG; R10577; 9; 24;; p. BS TACCAGGAATTGCATTTCGAGTGG; R10578; 9; 24;; p. BS TTAGCAGAAATGCTTTTCCGACTA; R10579; 9; 24;; p. BS TTAGCAGAAATGCTTTTCCAAAGG; R10580; 9; 24;; p. BS TCCTCGGAAGGCCAATTCCGGATA; R10581; 9; 24;; p. BS TTCTCGGGATGCTGTTACCAAGAG; R10582; 10; 24;; p. BS TTCTTGGTACGGAATTACCTATGA; R10583; 11; 24;; p. BS TACTCCGAAAGTGCATTCCCCGAG; R10584; 12; 24;; p. BS ATCCTGGAAATAAGATTCACCGAG; R10585; 12; 24;; p. BS TTCACAGTAATACGGTTCCGGGAG; R10586; 12; 24;; p. BS TTCCGTTAACAGGGGTTCATAGAG; R10587; 12; 24;; p. BS TTCGTGAAAAATGGCTTCCTGGAG; R10588; 12; 24;; p. BS TTCGCAGAGAGACACTACCTGGAG; R10589; 12; 24;; p. BS TACCCAGAATCGGTTTTATTAGAG; R10590; 12; 24;; p. BS TACGATGAAGACGTATACCCGGAG; R10591; 12; 24;; p. BS TTCCAAGTATTGATCTTCCCCGAC; R10592; 13; 24;; p. XX CC 4 rounds of selection; STAT5A homotetramer binding XX RN [1]; RE0016782. RX PUBMED: 10594041. RA Soldaini E., John S., Moro S., Bollenbacher J., Schindler U., Leonard W. J. RT DNA binding site selection of dimeric and tetrameric Stat5 proteins reveals a large repertoire of divergent tetrameric Stat5a binding sites. RL Mol. Cell. Biol. 20:389-401 (2000). XX // AC M00461 XX ID I$OVO_01 XX DT 29.08.2001 (created); rio. DT 29.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Ovo XX BF T00669; Ovo-B; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 6 4 4 7 N 02 9 4 3 5 N 03 5 6 2 8 N 04 11 4 0 6 W 05 1 5 13 2 G 06 4 2 2 13 T 07 21 0 0 0 A 08 21 0 0 0 A 09 0 21 0 0 C 10 8 5 3 5 N 11 0 0 21 0 G 12 5 5 1 10 N 13 4 9 5 3 N 14 6 6 5 4 N 15 5 6 6 4 N XX BA 21 sites selected from random oligonucleotides XX BS TGACGTAACAGTGAG; R10600; 7; 15;; p. BS TACAGTAACAGTCTA; R10601; 24; 15;; p. BS GTATGTAACCGTAGT; R10602; 14; 15;; p. BS TGTAGCAACTGTGAG; R10603; 11; 15;; p. BS GAGTGTAACTGTCTT; R10604; 5; 15;; p. BS AACCTTAACAGATGA; R10605; 26; 15;; p. BS AATAGCAACCGACAC; R10606; 12; 15;; p. BS CATAGAAACCGACCG; R10607; 30; 15;; p. BS TCGACGAACAGCACA; R10608; 9; 15;; p. BS ATTAGTAACGGACTC; R10609; 14; 15;; p. BS TCCTCTAACGGCCAT; R10610; 18; 15;; p. BS TATCCTAACCGCTGC; R10611; 18; 15;; p. BS GTCATTAACAGCGAG; R10612; 20; 15;; p. BS CTTAGAAACCGACTG; R10613; 25; 15;; p. BS TCCTATAACTGTGCA; R10614; 19; 15;; p. BS AAAACTAACTGTCGC; R10615; 22; 15;; p. BS CCAAGTAACTGCAAC; R10616; 10; 15;; p. BS AGACGTAACGGGCCG; R10617; 25; 15;; p. BS ATTAGAAACAGTGGT; R10618; 6; 15;; p. BS GATTCGAACAGTTCA; R10619; 5; 15;; p. BS CACTGAAACAGTACC; R10620; 13; 15;; p. XX CC 5 rounds of selection XX RN [1]; RE0016785. RX PUBMED: 10637336. RA Lee S., Garfinkel M. D. RT Characterization of Drosophila OVO protein DNA binding specificity using random DNA oligomer selection suggests zinc finger degeneration. RL Nucleic Acids Res. 28:826-834 (2000). XX // AC M00462 XX ID V$GATA6_01 XX DT 29.08.2001 (created); rio. DT 29.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA GATA-6 XX BF T02684; GATA-6; Species: chick, Gallus gallus. BF T02686; GATA-6; Species: mouse, Mus musculus. BF T02689; GATA-6; Species: human, Homo sapiens. BF T02717; GATA-6; Species: rat, Rattus norvegicus. BF T02714; GATA-6A; Species: clawed frog, Xenopus laevis. BF T02715; GATA-6B; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 25 15 17 12 N 02 23 17 11 18 N 03 23 19 6 21 N 04 0 0 69 0 G 05 69 0 0 0 A 06 0 0 0 69 T 07 36 3 7 23 W 08 35 8 15 11 A 09 14 17 24 14 N 10 17 19 18 15 N XX BA 69 sites selected from random oligonucleotides XX BS ACAGATAACT; R10621; 10; 10;; p. BS AAAGATAAGG; R10622; 10; 10;; p. BS CCTGATATGC; R10623; 10; 10;; p. BS ACTGATAACG; R10624; 10; 10;; p. BS ACAGATACGC; R10625; 10; 10;; p. BS GACGATAAGA; R10626; 10; 10;; p. BS GGAGATAGAC; R10627; 10; 10;; p. BS TATGATACGG; R10628; 10; 10;; p. BS ACCGATAAGA; R10629; 10; 10;; p. BS ATTGATAAGA; R10630; 10; 10;; p. BS AAAGATAAGA; R10631; 10; 10;; p. BS GCTGATATTC; R10632; 10; 10;; p. BS AGCGATAGTA; R10633; 10; 10;; p. BS CGTGATATGA; R10634; 10; 10;; p. BS AAAGATAAAA; R10635; 10; 10;; p. BS GACGATAGCG; R10636; 10; 10;; p. BS ACGGATAGTA; R10637; 10; 10;; p. BS ACTGATATAC; R10638; 10; 10;; p. BS TGAGATACGG; R10639; 10; 10;; p. BS CATGATAGCG; R10640; 10; 10;; p. BS GTTGATAAGT; R10641; 10; 10;; p. BS TTCGATAACC; R10642; 10; 10;; p. BS GACGATAGTC; R10643; 10; 10;; p. BS AAAGATAAGA; R10644; 10; 10;; p. BS GCTGATAGTA; R10645; 10; 10;; p. BS ACCGATATCA; R10646; 10; 10;; p. BS AATGATAAGA; R10647; 10; 10;; p. BS CAAGATAACT; R10648; 10; 10;; p. BS TTCGATACGT; R10649; 10; 10;; p. BS ACAGATAACG; R10650; 10; 10;; p. BS AGAGATAAAG; R10651; 10; 10;; p. BS ATTGATAGAC; R10652; 10; 10;; p. BS CTAGATAAGA; R10653; 10; 10;; p. BS AGAGATAAGA; R10654; 10; 10;; p. BS TTTGATACTT; R10655; 10; 10;; p. BS GTTGATATCG; R10656; 10; 10;; p. BS GCCGATTAGT; R10657; 10; 10;; p. BS TACGATTGTC; R10658; 10; 10;; p. BS CAAGATTGAC; R10659; 10; 10;; p. BS ACGGATTTTC; R10660; 10; 10;; p. BS CTTGATTGAC; R10661; 10; 10;; p. BS GGTGATTGAC; R10662; 10; 10;; p. BS TATGATTGTC; R10663; 10; 10;; p. BS GTCGATTACC; R10664; 10; 10;; p. BS AGCGATTAAC; R10665; 10; 10;; p. BS GACGATTAGG; R10666; 10; 10;; p. BS CCAGATTACT; R10667; 10; 10;; p. BS CAAGATTAGC; R10668; 10; 10;; p. BS TGAGATTATA; R10669; 10; 10;; p. BS GATGATTACG; R10670; 10; 10;; p. BS AATGATTAGA; R10671; 10; 10;; p. BS CGAGATTCGT; R10672; 10; 10;; p. BS GTCGATTAAG; R10673; 10; 10;; p. BS CCAGATTAGA; R10674; 10; 10;; p. BS ATGGATTTGT; R10675; 10; 10;; p. BS GTAGATTACG; R10676; 10; 10;; p. BS TAGGATTCAT; R10677; 10; 10;; p. BS CTTGATTTGG; R10678; 10; 10;; p. BS TCGGATTATG; R10679; 10; 10;; p. BS GTCGATGAAT; R10680; 10; 10;; p. BS ATAGATGACG; R10681; 10; 10;; p. BS TTAGATGCCC; R10682; 10; 10;; p. BS TACGATGATT; R10683; 10; 10;; p. BS GACGATGACG; R10684; 10; 10;; p. BS AAAGATGGTT; R10685; 10; 10;; p. BS CTTGATGGAT; R10686; 10; 10;; p. BS ACGGATCACC; R10687; 10; 10;; p. BS CACGATCTTG; R10688; 10; 10;; p. BS CGCGATCTAT; R10689; 10; 10;; p. XX RN [1]; RE0016786. RX PUBMED: 9784406. RA Sakai Y., Nakagawa R., Sato R., Maeda M. RT Selection of DNA binding sites for human transcriptional regulator GATA-6. RL Biochem. Biophys. Res. Commun. 250:682-688 (1998). XX // AC M00463 XX ID V$POU3F2_01 XX DT 30.08.2001 (created); rio. DT 30.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA POU3F2 XX BF T00630; POU3F2; Species: human, Homo sapiens. BF T01524; POU3F2; Species: rat, Rattus norvegicus. BF T01873; POU3F2; Species: mouse, Mus musculus. BF T00632; POU3F2 (N-Oct-5a); Species: human, Homo sapiens. BF T00633; POU3F2 (N-Oct-5b); Species: human, Homo sapiens. XX P0 A C G T 01 14 2 0 1 A 02 0 1 0 16 T 03 2 0 15 0 G 04 8 9 0 0 M 05 17 0 0 0 A 06 0 0 0 17 T 07 5 0 0 9 W 08 1 0 0 1 W 09 15 0 0 2 A 10 1 0 0 16 T 11 0 0 0 17 T 12 2 12 0 3 C 13 17 0 0 0 A 14 0 0 0 17 T XX BA 17 non-octamer sites selected from random oligonucleotides XX BS ATGCATA AATTAT; R10691; 8; 14; 15; p. BS ATACATATATTCAT; R10692; 5; 14;; p. BS ATGAATT ATTAAT; R10693; 16; 14; 23; p. BS ATGCATT ATTCAT; R10694; 16; 14; 23; p. BS ATGCATT ATTTAT; R10695; 5; 14; 12; p. BS ATGAATA TTTAAT; R10696; 6; 14; 13; p. BS ATGAATT ATTCAT; R10697; 16; 14; 23; p. BS ATGAATA ATTCAT; R10698; 10; 14; 17; p. BS CTGCATT ATTCAT; R10699; 16; 14; 23; p. BS TTGAATT ATTCAT; R10700; 16; 14; 23; p. BS ATGAATT ATTCAT; R10701; 8; 14; 15; p. BS ATGCAT ATTCAT; R10702; 5; 14; 11, 12; p. BS ATACATTATTTCAT; R10703; 15; 14;; p. BS ATGAAT ATTCAT; R10704; 17; 14; 23, 24; p. BS CCGCATT ATTCAT; R10705; 12; 14; 19; p. BS ATGCAT ATTTAT; R10706; 10; 14; 16, 17; p. BS ATGAATA ATTCAT; R10707; 16; 14; 23; p. XX CC 8 rounds of selection XX RN [1]; RE0016787. RX PUBMED: 9852081. RA Rhee J. M., Gruber C. A., Brodie T. B., Trieu M., Turner E. E. RT Highly cooperative homodimerization is a conserved property of neural POU proteins RL J. Biol. Chem. 273:34196-34205 (1998). XX // AC M00464 XX ID V$POU3F2_02 XX DT 30.08.2001 (created); rio. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA POU3F2 XX BF T00630; POU3F2; Species: human, Homo sapiens. BF T01524; POU3F2; Species: rat, Rattus norvegicus. BF T01873; POU3F2; Species: mouse, Mus musculus. BF T00632; POU3F2 (N-Oct-5a); Species: human, Homo sapiens. BF T00633; POU3F2 (N-Oct-5b); Species: human, Homo sapiens. XX P0 A C G T 01 1 0 0 6 T 02 0 0 0 7 T 03 7 0 0 0 A 04 0 0 0 7 T 05 0 0 7 0 G 06 0 3 0 4 Y 07 0 0 0 7 T 08 7 0 0 0 A 09 7 0 0 0 A 10 0 0 0 7 T XX BA 7 octamer-containing sites selected from random oligonucleotides XX BS ATATGTTAAT; R10708; 19; 10;; p. BS TTATGCTAAT; R10709; 19; 10;; p. BS TTATGTTAAT; R10710; 19; 10;; p. BS TTATGTTAAT; R10711; 19; 10;; p. BS TTATGTTAAT; R10712; 19; 10;; p. BS TTATGCTAAT; R10713; 6; 10;; p. BS TTATGCTAAT; R10714; 10; 10;; p. XX CC 8 rounds of selection XX RN [1]; RE0016787. RX PUBMED: 9852081. RA Rhee J. M., Gruber C. A., Brodie T. B., Trieu M., Turner E. E. RT Highly cooperative homodimerization is a conserved property of neural POU proteins RL J. Biol. Chem. 273:34196-34205 (1998). XX // AC M00465 XX ID V$POU6F1_01 XX DT 30.08.2001 (created); rio. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA POU6F1 XX BF T01888; POU6F1 (c2); Species: mouse, Mus musculus. XX P0 A C G T 01 3 1 12 0 G 02 2 13 0 1 C 03 14 0 0 2 A 04 2 0 0 14 T 05 13 1 0 2 A 06 13 1 2 0 A 07 7 0 0 9 W 08 0 0 0 16 T 09 3 0 0 13 T 10 16 0 0 0 A 11 0 0 1 15 T XX BA 16 sites selected from random oligonucleotides XX BS GCATAGATTAT; R10715; 3; 11;; p. BS CATATCATTAT; R10716; 4; 11;; p. BS GCATAAATTAT; R10717; 10; 11;; p. BS GCATAAATTAT; R10718; 4; 11;; p. BS GCATAATTTAT; R10719; 11; 11;; p. BS GCATAAATTAT; R10720; 12; 11;; p. BS GCATAATTTAT; R10721; 10; 11;; p. BS GCATAATTTAT; R10722; 4; 11;; p. BS AATATGTTAAT; R10723; 8; 11;; p. BS ACATAAATTAT; R10724; 9; 11;; p. BS GCATAATTAAG; R10725; 4; 11;; p. BS ATATCATTAAT; R10726; 5; 11;; p. BS GCATAAATTAT; R10727; 3; 11;; p. BS GCATAATTTAT; R10728; 9; 11;; p. BS GCATAATTTAT; R10729; 10; 11;; p. BS GCATAATTTAT; R10730; 7; 11;; p. XX CC 8 rounds of selection XX RN [1]; RE0016787. RX PUBMED: 9852081. RA Rhee J. M., Gruber C. A., Brodie T. B., Trieu M., Turner E. E. RT Highly cooperative homodimerization is a conserved property of neural POU proteins RL J. Biol. Chem. 273:34196-34205 (1998). XX // AC M00466 XX ID V$HIF1_Q5 XX DT 30.08.2001 (created); vma. DT 18.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA HIF-1 XX DE hypoxia-inducible factor 1 XX BF T01609; HIF-1; Species: human, Homo sapiens. BF T04667; HIF-1; Species: mouse, Mus musculus. BF T05377; HIF-1; Species: cattle, Bos taurus. BF T05404; HIF-1; Species: rat, Rattus norvegicus. BF T01610; HIF-1alpha; Species: human, Homo sapiens. XX P0 A C G T 01 3 6 1 2 N 02 3 2 7 0 G 03 1 1 3 7 T 04 11 0 1 0 A 05 0 12 0 0 C 06 0 0 12 0 G 07 0 0 0 12 T 08 0 0 12 0 G 09 2 7 3 0 C 10 2 3 6 1 N 11 0 2 8 2 G 12 0 4 4 4 B XX BA 12 compiled genomic binding sites XX BS CCTACGTGCTGT; R03219; 3; 12;; p. BS GCAACGTGCAGC; R10172; 6; 12;; n. BS CATACGTGGGCT; R10227; 6; 12;; p. BS TGTACGTGCAGG; R10350; 3; 12;; n. BS AATACGTGCGCT; R10350; 20; 12;; n. BS CGTACGTGCCTC; R10395; 7; 12;; p. BS CGGACGTGACTC; R10593; 8; 12;; n. BS CGGACGTGGGGC; R10594; 6; 12;; p. BS AGTACGTGACGG; R10595; 3; 12;; p. BS AGTGCGTGCGGG; R10596; 7; 12;; p. BS TACACGTGGGGT; R10597; 8; 12;; p. BS CGGACGTGCGGG; R10599; 3; 12;; n. XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00467 XX ID V$ROAZ_01 XX DT 31.08.2001 (created); rio. DT 31.08.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Roaz XX DE rat Olf-1/EBF-associated zinc finger protein XX BF T02815; Roaz; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 0 14 0 G 02 0 14 0 0 C 03 14 0 0 0 A 04 0 14 0 0 C 05 0 14 0 0 C 06 0 14 0 0 C 07 10 0 0 4 A 08 9 0 0 5 W 09 0 0 14 0 G 10 0 0 14 0 G 11 0 0 14 0 G 12 0 0 0 14 T 13 0 1 13 0 G 14 6 7 0 1 M XX BA 14 sites selected from random oligonucleotides XX BS GCACCCTAGGGTGT; R10731; 1; 14;; p. BS GCACCCTTGGGTGC; R10732; 1; 14;; p. BS GCACCCAAGGGTGA; R10733; 8; 14;; p. BS GCACCCAAGGGTGA; R10734; 8; 14;; p. BS GCACCCATGGGTGC; R10735; 5; 14;; p. BS GCACCCAAGGGTGA; R10736; 8; 14;; p. BS GCACCCAAGGGTGA; R10737; 7; 14;; p. BS GCACCCTAGGGTGC; R10738; 4; 14;; p. BS GCACCCTTGGGTCC; R10739; 5; 14;; p. BS GCACCCATGGGTGC; R10740; 5; 14;; p. BS GCACCCATGGGTGC; R10741; 1; 14;; p. BS GCACCCAAGGGTGA; R10742; 8; 14;; p. BS GCACCCAAGGGTGA; R10743; 8; 14;; p. BS GCACCCAAGGGTGC; R10744; 5; 14;; p. XX CC 9 rounds of selection XX RN [1]; RE0013845. RX PUBMED: 9774661. RA Tsai R. Y. L., Reed R. R. RT Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein Roaz RL Mol. Cell. Biol. 18:6447-6456 (1998). XX // AC M00468 XX ID V$AP2REP_01 XX DT 03.09.2001 (created); rio. DT 03.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA AP-2rep XX DE AP-2 repressor XX BF T04686; AP-2rep; Species: human, Homo sapiens. XX P0 A C G T 01 2 8 0 1 C 02 7 2 0 2 A 03 1 1 9 0 G 04 0 2 0 9 T 05 2 1 7 1 G 06 1 1 7 2 G 07 2 1 6 2 G XX BA 11 sites selected from random oligonucleotides XX CC 5 rounds of selection XX RN [1]; RE0016796. RX PUBMED: 10704285. RA Roth C., Schuierer M., Gunther K., Buettner R. RT Genomic structure and DNA binding properties of the human zinc finger transcriptional repressor AP-2rep (KLF12). RL Genomics 63:384-390 (2000). XX // AC M00469 XX ID V$AP2ALPHA_01 XX DT 04.09.2001 (created); rio. DT 04.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA AP-2alpha XX BF T00033; AP-2alpha; Species: mouse, Mus musculus. BF T02488; AP-2alpha isoform 2; Species: mouse, Mus musculus. BF T02489; AP-2alpha isoform 3; Species: mouse, Mus musculus. BF T02490; AP-2alpha isoform 4; Species: mouse, Mus musculus. BF T00035; AP-2alphaA; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 185 0 G 02 0 185 0 0 C 03 0 185 0 0 C 04 22 71 46 46 N 05 19 57 61 48 N 06 55 44 67 19 N 07 53 30 91 11 R 08 19 16 137 13 G 09 9 78 79 19 S XX BA 185 sites selected from random oligonucleotides XX CC 4 rounds of selection XX RN [1]; RE0016805. RX PUBMED: 10497269. RA McPherson L. A., Weigel R. J. RT AP2alpha and AP2gamma: a comparison of binding site specificity and trans-activation of the estrogen receptor promoter and single site promoter constructs RL Nucleic Acids Res. 27:4040-4049 (1999). XX // AC M00470 XX ID V$AP2GAMMA_01 XX DT 04.09.2001 (created); rio. DT 04.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA AP-2gamma XX BF T02468; AP-2gamma; Species: human, Homo sapiens. BF T02470; AP-2gamma; Species: mouse, Mus musculus. XX P0 A C G T 01 0 0 146 0 G 02 0 146 0 0 C 03 0 146 0 0 C 04 4 65 31 46 Y 05 14 46 58 28 N 06 46 35 57 8 N 07 28 13 93 12 G 08 12 9 116 9 G 09 11 56 63 16 S XX BA 146 sites selected from random oligonucleotides XX CC 4 rounds of selection XX RN [1]; RE0016805. RX PUBMED: 10497269. RA McPherson L. A., Weigel R. J. RT AP2alpha and AP2gamma: a comparison of binding site specificity and trans-activation of the estrogen receptor promoter and single site promoter constructs RL Nucleic Acids Res. 27:4040-4049 (1999). XX // AC M00471 XX ID V$TBP_01 XX DT 04.09.2001 (created); rio. DT 04.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA TBP XX DE TATA binding protein XX BF T00796; TBP; Species: mouse, Mus musculus. BF T00794; TBP; Species: human, Homo sapiens. BF T02111; TBP; Species: clawed frog, Xenopus. XX P0 A C G T 01 3 4 9 31 T 02 34 0 6 7 A 03 0 0 0 47 T 04 47 0 0 0 A 05 47 0 0 0 A 06 40 1 4 2 A 07 3 3 6 35 T 08 21 4 4 18 W XX BA 47 sites selected from random oligonucleotides XX BS TATAAAGC; R10795; 4; 8;; p. BS TATAAATA; R10796; 4; 8;; p. BS TATAAAAG; R10797; 4; 8;; p. BS TATAAGTT; R10798; 4; 8;; p. BS TATAATCA; R10799; 4; 8;; p. BS TATAAAAG; R10800; 4; 8;; p. BS TATAAAAG; R10801; 4; 8;; p. BS TATAAAGT; R10802; 4; 8;; p. BS TATAAATT; R10803; 4; 8;; p. BS TATAAATA; R10804; 4; 8;; p. BS TATAAACG; R10805; 4; 8;; p. BS TATAAACA; R10806; 4; 8;; p. BS TATAAGGT; R10807; 4; 8;; p. BS TATAACGC; R10808; 4; 8;; p. BS TATAAATT; R10809; 4; 8;; p. BS TATAAAGA; R10810; 4; 8;; p. BS TATAAATT; R10811; 4; 8;; p. BS TATAAGTT; R10812; 4; 8;; p. BS TATAAATA; R10813; 4; 8;; p. BS TATAAGGA; R10814; 4; 8;; p. BS TATAAATA; R10815; 4; 8;; p. BS TATAATTT; R10816; 4; 8;; p. BS TATAAATA; R10817; 2; 8;; p. BS GATAAATT; R10818; 2; 8;; p. BS GGTAAATA; R10819; 2; 8;; p. BS GATAAATA; R10820; 2; 8;; p. BS TTTAAATC; R10821; 2; 8;; p. BS CTTAAATT; R10822; 2; 8;; p. BS TATAAATT; R10823; 2; 8;; p. BS CTTAAATT; R10824; 2; 8;; p. BS CTTAAATA; R10825; 2; 8;; p. BS GGTAAATA; R10826; 2; 8;; p. BS CGTAAATA; R10827; 2; 8;; p. BS TATAAATA; R10828; 2; 8;; p. BS AATAAATA; R10829; 2; 8;; p. BS GGTAAATA; R10830; 2; 8;; p. BS GGTAAATA; R10831; 2; 8;; p. BS ATTAAATT; R10832; 2; 8;; p. BS GATAAATA; R10833; 2; 8;; p. BS TTTAAATC; R10834; 2; 8;; p. BS TATAAATT; R10835; 2; 8;; p. BS TATAAATT; R10836; 2; 8;; p. BS TATAAATA; R10837; 2; 8;; p. BS GTTAAATT; R10838; 2; 8;; p. BS TATAAATA; R10839; 2; 8;; p. BS AATAAATT; R10840; 2; 8;; p. BS GGTAAATT; R10841; 2; 8;; p. XX CC restriction endonuclease protection selection and amplification (REPSA) method; 10 rounds of selection XX RN [1]; RE0016807. RX PUBMED: 9241250. RA Hardenbol P., Wang J. C., van Dyke M. W. RT Identification of preferred hTBP DNA binding sites by the combinatorial method REPSA RL Nucleic Acids Res. 25:3339-3344 (1997). XX // AC M00472 XX ID V$FOXO4_01 XX DT 06.09.2001 (created); rio. DT 06.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA FOXO4 XX DE fork head box O4 XX BF T03403; FOXO4; Species: human, Homo sapiens. BF T04176; FOXO4; Species: mouse, Mus musculus. XX P0 A C G T 01 14 6 9 1 R 02 10 1 0 19 W 03 22 5 0 3 A 04 30 0 0 0 A 05 30 0 0 0 A 06 0 30 0 0 C 07 30 0 0 0 A 08 16 7 3 4 A 09 7 7 9 7 N 10 5 13 3 9 N 11 7 11 3 8 N XX BA 30 sites selected from random oligonucleotides XX BS CAAAACACATG; R10866; 13; 11;; p. BS GTAAACACCAT; R10867; 4; 11;; p. BS ATAAACAAGAC; R10868; 11; 11;; p. BS TAAAACAAGTT; R10869; 17; 11;; p. BS CAAAACAACCC; R10870; 16; 11;; p. BS ATAAACAATA; R10871; 17; 11; 27; p. BS ATAAACAAAGT; R10872; 5; 11;; p. BS ATAAACAGGCA; R10873; 10; 11;; p. BS ATAAACATGCA; R10874; 10; 11;; p. BS ACAAACATCCT; R10875; 5; 11;; p. BS ATAAACAAATC; R10876; 13; 11;; p. BS AAAAACAATAC; R10877; 11; 11;; p. BS ATAAACAGTAG; R10878; 5; 11;; p. BS GAAAACACTTA; R10879; 6; 11;; p. BS GTAAACAAGTC; R10880; 4; 11;; p. BS ATAAACAACCC; R10881; 8; 11;; p. BS ATAAACAAGCT; R10882; 11; 11;; p. BS GTAAACAATCA; R10883; 9; 11;; p. BS CTAAACAATTG; R10884; 5; 11;; p. BS GTAAACAAACC; R10885; 14; 11;; p. BS GTAAACAACCT; R10886; 16; 11;; p. BS GTAAACAGGGA; R10887; 13; 11;; p. BS ATCAACAAGCC; R10888; 10; 11;; p. BS CACAACAACCC; R10889; 6; 11;; p. BS GTCAACACTGC; R10890; 6; 11;; p. BS GTCAACACATT; R10891; 6; 11;; p. BS CACAACATGCC; R10892; 7; 11;; p. BS CATAACACATT; R10893; 13; 11;; p. BS AATAACATCCA; R10894; 4; 11;; p. BS AATAACACATA; R10895; 7; 11;; p. XX CC 6 rounds of selection XX RN [1]; RE0016820. RX PUBMED: 11353388. RA Biggs W. H. 3rd, Cavenee W. K., Arden K. C. RT Identification and characterization of members of the FKHR (FOX O) subclass of winged-helix transcription factors in the mouse RL Mamm. Genome 12:416-425 (2001). XX // AC M00473 XX ID V$FOXO1_01 XX DT 06.09.2001 (created); rio. DT 06.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA FOXO1 XX DE fork head box O1 XX BF T04203; FOXO1; Species: mouse, Mus musculus. BF T02936; FOXO1a; Species: human, Homo sapiens. XX P0 A C G T 01 33 36 14 17 N 02 49 18 30 3 R 03 33 3 0 64 W 04 74 10 0 16 A 05 100 0 0 0 A 06 100 0 0 0 A 07 0 100 0 0 C 08 100 0 0 0 A 09 54 24 11 11 A 10 33 19 31 28 N XX BA 39 sites selected from random oligonucleotides XX CC 6 rounds of selection XX RN [1]; RE0016820. RX PUBMED: 11353388. RA Biggs W. H. 3rd, Cavenee W. K., Arden K. C. RT Identification and characterization of members of the FKHR (FOX O) subclass of winged-helix transcription factors in the mouse RL Mamm. Genome 12:416-425 (2001). XX // AC M00474 XX ID V$FOXO1_02 XX DT 06.09.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA FOXO1 XX DE fork head box O1 XX BF T04203; FOXO1; Species: mouse, Mus musculus. BF T02936; FOXO1a; Species: human, Homo sapiens. XX P0 A C G T 01 4 1 11 4 G 02 4 2 4 10 N 03 3 5 8 5 N 04 2 1 0 18 T 05 0 0 0 21 T 06 0 0 21 0 G 07 1 0 0 20 T 08 1 0 0 20 T 09 0 0 1 20 T 10 19 0 0 2 A 11 0 20 0 1 C 12 7 1 7 5 N 13 3 3 3 11 T 14 0 5 4 10 T XX BA 21 sites selected from random oligonucleotides XX BS GAGTTGTTTAC; R10898; 22; 14; 33, 34, 35; p. BS TTATTGTTTACAT; R10899; 20; 14; 33; p. BS GGCTTGTTTACGTC; R10900; 19; 14;; p. BS TTGTTGTTGTCATT; R10901; 17; 14;; p. BS AAGTTGTTTACGTT; R10902; 17; 14;; p. BS GTCTTGTTTACTAG; R10903; 16; 14;; p. BS GTCTTGAATACTGT; R10904; 16; 14;; p. BS AGGTTGTTTACATT; R10905; 15; 14;; p. BS GGGTTGTTTACATC; R10906; 13; 14;; p. BS TTATTGTTTACGTC; R10907; 11; 14;; p. BS CCTATGTTTACCAG; R10908; 10; 14;; p. BS AGTTTGTTTACAGC; R10909; 9; 14;; p. BS GTCTTGTTTACGCC; R10910; 9; 14;; p. BS GAGTTGTTTACTCT; R10911; 7; 14;; p. BS ATGTTGTTTTTGCG; R10912; 6; 14;; p. BS TTATTGTTTACTGT; R10913; 3; 14;; p. BS GTCCTGTTTACATT; R10914; 1; 14;; p. BS GTTTTGTTTACAAT; R10915; 1; 14;; p. BS GATTTGTTTACGTT; R10916; 1; 14;; p. BS GCTATGTTTACGTT; R10917; 1; 14;; p. BS GTTGTTTACTTG; R10918; 1; 14; 1, 2; p. XX CC 4 rounds of selection XX RN [1]; RE0016824. RX PUBMED: 10880363. RA Furuyama T., Nakazawa T., Nakano I., Mori N. RT Identification of the differential distribution patterns of mRNAs and consensus binding sequences for mouse DAF-16 homologues RL Biochem. J. 349:629-634 (2000). XX // AC M00475 XX ID N$DAF16_01 XX DT 06.09.2001 (created); rio. DT 06.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA DAF-16 XX DE defective dauer formation 16 XX BF T03398; daf-16a1; Species: Caenorhabditis elegans. BF T03399; daf-16a2; Species: Caenorhabditis elegans. BF T03400; daf-16b; Species: Caenorhabditis elegans. XX P0 A C G T 01 4 3 9 7 N 02 4 3 7 10 N 03 4 4 12 5 N 04 1 0 1 23 T 05 0 0 0 25 T 06 1 0 24 0 G 07 0 0 0 25 T 08 0 1 0 24 T 09 0 0 0 25 T 10 22 0 2 1 A 11 0 21 0 4 C 12 10 3 6 5 N 13 8 5 3 7 N 14 3 10 1 8 Y XX BA 25 sites selected from random oligonucleotides XX CC 4 rounds of selection XX RN [1]; RE0016824. RX PUBMED: 10880363. RA Furuyama T., Nakazawa T., Nakano I., Mori N. RT Identification of the differential distribution patterns of mRNAs and consensus binding sequences for mouse DAF-16 homologues RL Biochem. J. 349:629-634 (2000). XX // AC M00476 XX ID V$FOXO4_02 XX DT 06.09.2001 (created); rio. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA FOXO4 XX DE fork head box O4 XX BF T03403; FOXO4; Species: human, Homo sapiens. BF T04176; FOXO4; Species: mouse, Mus musculus. XX P0 A C G T 01 8 6 4 4 N 02 3 5 5 9 N 03 0 2 14 6 G 04 0 0 0 22 T 05 0 0 0 22 T 06 0 0 22 0 G 07 0 0 0 22 T 08 0 0 0 22 T 09 2 1 0 19 T 10 19 0 0 3 A 11 0 20 0 2 C 12 5 6 8 3 N 13 5 2 1 13 T 14 3 3 6 9 N XX BA 22 sites selected from random oligonucleotides XX CC 4 rounds of selection XX RN [1]; RE0016824. RX PUBMED: 10880363. RA Furuyama T., Nakazawa T., Nakano I., Mori N. RT Identification of the differential distribution patterns of mRNAs and consensus binding sequences for mouse DAF-16 homologues RL Biochem. J. 349:629-634 (2000). XX // AC M00477 XX ID V$FOXO3_01 XX DT 06.09.2001 (created); rio. DT 06.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA FOXO3 XX DE fork head box O3 XX BF T04178; FOXO3; Species: mouse, Mus musculus. BF T02938; FOXO3a; Species: human, Homo sapiens. BF T02939; FOXO3b; Species: human, Homo sapiens. XX P0 A C G T 01 4 4 2 11 T 02 5 4 5 7 N 03 1 6 10 5 N 04 0 0 1 21 T 05 0 0 0 22 T 06 0 0 22 0 G 07 0 0 0 22 T 08 0 0 0 22 T 09 1 0 1 20 T 10 20 0 0 2 A 11 0 19 1 2 C 12 9 2 5 5 N 13 4 1 0 13 T 14 9 2 0 8 W XX BA 22 sites selected from random oligonucleotides XX CC 4 rounds of selection XX RN [1]; RE0016824. RX PUBMED: 10880363. RA Furuyama T., Nakazawa T., Nakano I., Mori N. RT Identification of the differential distribution patterns of mRNAs and consensus binding sequences for mouse DAF-16 homologues RL Biochem. J. 349:629-634 (2000). XX // AC M00478 XX ID V$CDC5_01 XX DT 06.09.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Cdc5 XX DE cell division control protein 5 XX BF T04728; Cdc5; Species: human, Homo sapiens. XX P0 A C G T 01 0 1 9 0 G 02 6 1 1 2 A 03 1 0 3 6 T 04 1 0 1 8 T 05 1 0 0 9 T 06 10 0 0 0 A 07 8 1 0 1 A 08 1 7 0 2 C 09 6 0 3 1 A 10 1 1 0 8 T 11 8 1 1 0 A 12 6 0 2 2 A XX BA 10 sites selected from random oligonucleotides XX BS GATTTAACATAA; R10919; 3; 12;; p. BS GATTTAACATAA; R10920; 2; 12;; p. BS GATTTAACATAA; R10921; 4; 12;; p. BS GATTTAACATAA; R10922; 4; 12;; p. BS GATTTAACATAA; R10923; 1; 12;; p. BS GGTGTAACGTGG; R10924; 4; 12;; p. BS GTGTTACCACAT; R10925; 4; 12;; p. BS CCATAAATTTAG; R10926; 1; 12;; p. BS GAGATAAAGTCT; R10927; 3; 12;; p. BS GTGTTATTGAAA; R10928; 3; 12;; p. XX CC 6-8 rounds of selection XX RN [1]; RE0016827. RX PUBMED: 11082045. RA Lei X. H., Shen X., Xu X. Q., Bernstein H. S. RT Human Cdc5, a regulator of mitotic entry, can act as a site-specific DNA binding protein RL J. Cell Sci. 113:4523-4531 (2000). XX // AC M00479 XX ID P$Alfin1_Q2 XX DT 10.09.2001 (created); rhe/rge. DT 10.09.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA Alfin1 XX BF T04733; Alfin1; Species: alfalfa, Medicago sativa. XX P0 A C G T 01 4 0 4 2 R 02 5 1 3 1 R 03 5 1 4 0 R 04 2 2 6 2 N 05 5 2 5 0 R 06 2 2 6 2 N 07 0 0 13 0 G 08 0 0 0 13 T 09 0 0 13 0 G 10 1 1 8 3 G 11 1 1 8 3 G 12 1 1 10 1 G 13 3 4 3 2 N 14 2 3 2 3 N 15 1 0 5 3 K XX BA 9 artificial sequences and 4 genomic sequences XX BS TGAGCGGTGGCCC; R10969; 13; 15; 26, 27; p. BS AAGGGGGTGGGGACG; R10970; 3; 15;; p. BS AAGGGGGTGGGGACG; R10971; 3; 15;; p. BS TAGGGTGTGGGGGGT; R10972; 3; 15;; p. BS GCATAGGTGAGGTGG; R10973; 2; 15;; p. BS AGAAACGTGGAGAAT; R10974; 10; 15;; p. BS GAAGGAGTGTGGTAG; R10975; 5; 15;; p. BS GGCAGCGTGTTGC; R10976; 11; 15; 24, 25; p. BS GTGTAGGTGGGACT; R10977; 12; 15; 26; p. BS GTGGGGGCA; R10978; 1; 15; 1, 2, 3, 4, 5, 6; p. BS CATGTGTGTGTT; R10979; 1; 15; 1, 2, 3; p. BS CAAGTGGTGCTG; R10980; 1; 15; 1, 2, 3; p. BS AAAGCGGTGCTG; R10981; 1; 15; 13, 14, 15; p. XX CC 4 rounds of selection (random oligomer selection) XX RN [1]; RE0016837. RX PUBMED: 9869418. RA Bastola D. R., Pethe V. V., Winicov I. RT Alfin1, a novel zinc-finger protein in alfalfa roots that binds to promoter elements in the salt-inducible MsPRP2 gene RL Plant Mol. Biol. 38:1123-1135 (1998). XX // AC M00480 XX ID V$LUN1_01 XX DT 10.09.2001 (created); rio. DT 10.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA LUN-1 XX BF T04734; LUN-1; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 0 24 T 02 0 24 0 0 C 03 0 24 0 0 C 04 0 24 0 0 C 05 24 0 0 0 A 06 0 0 24 0 G 07 1 22 1 0 C 08 0 0 0 5 T 09 23 0 0 1 A 10 1 23 0 0 C 11 0 1 0 16 T 12 0 0 0 21 T 13 1 2 0 21 T 14 3 0 21 0 G 15 0 0 23 0 G 16 0 0 24 0 G 17 24 0 0 0 A XX BA 24 sites selected from random oligonucleotides XX BS TCCCAGC ACTTAGGGA; R10982; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R10983; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R10984; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R10985; 21; 17; 28; p. BS TCCCAGA ACTTTGGGA; R10986; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R10987; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R10988; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R10989; 21; 17; 28; p. BS TCCCAGC TACTTGGGA; R10990; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R10991; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R10992; 21; 17; 28; p. BS TCCCAGCTAC TCGGGA; R10993; 21; 17; 31; p. BS TCCCAGC AC TGGGA; R10994; 21; 17; 28, 31, 32; p. BS TCCCAGC ACTTTGGGA; R10995; 21; 17; 28; p. BS TCCCAGCTAC TCGGGA; R10996; 21; 17; 31; p. BS TCCCAGC AC TGGGA; R10997; 21; 17; 28, 31, 32; p. BS TCCCAGCTAC TA GA; R10998; 21; 17; 31, 32, 35; p. BS TCCCAGC ACTTTGGGA; R10999; 21; 17; 28; p. BS TCCCAGCTAC TTAGGA; R11000; 21; 17; 31; p. BS TCCCAGCTAC TTAGGA; R11001; 21; 17; 31; p. BS TCCCAGC ACTTTGGGA; R11002; 21; 17; 28; p. BS TCCCAGG ACTTTGGGA; R11003; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R11004; 21; 17; 28; p. BS TCCCAGC ACTTTGGGA; R11005; 21; 17; 28; p. XX CC 3 rounds of selection XX RN [1]; RE0016839. RX PUBMED: 11278651. RA Chu D., Kakazu N., Gorrin-Rivas M. J., Lu H. P., Kawata M., Abe T., Ueda K., Adachi Y. RT Cloning and characterization of LUN, a novel ring finger protein that is highly expressed in lung and specifically binds to a palindromic sequence RL J. Biol. Chem. 276:14004-14013 (2001). XX // AC M00481 XX ID V$AR_01 XX DT 10.09.2001 (created); mas. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AR XX DE androgen receptor XX BF T00040; AR; Species: human, Homo sapiens. BF T00041; AR; Species: mouse, Mus musculus. BF T00042; AR; Species: rat, Rattus norvegicus. BF T04652; AR; Species: baboon, Papio hamadryas. BF T04653; AR; Species: chimpanzee, Pan troglodytes. BF T04654; AR; Species: macaque, Macaca fascicularis. BF T04655; AR; Species: lemur, Eulemur fulvus collaris. XX P0 A C G T 01 5 1 21 2 G 02 0 0 28 1 G 03 8 1 4 16 T 04 24 1 0 4 A 05 0 29 0 0 C 06 19 1 8 1 A 07 5 7 10 7 N 08 6 6 11 6 N 09 9 3 13 4 R 10 3 5 0 21 T 11 0 0 29 0 G 12 1 0 1 27 T 13 4 3 6 16 T 14 2 27 0 0 C 15 1 8 1 19 T XX BA 29 binding sites selected from random oligonucleotides XX BS AGTACGCGGCGTTCC; R10202; 5; 15;; n. BS AGAACGAAATGTTCT; R10205; 5; 15;; p. BS GGTACAGGGTGTACT; R10206; 5; 15;; p. BS GGTACGTATCGTACG; R10207; 5; 15;; p. BS GGAACAGAGTGTACT; R10208; 5; 15;; p. BS GGAACATTATGTTCT; R10209; 5; 15;; p. BS GGGACACGGTGTGCT; R10210; 5; 15;; p. BS GGAACATCATGTGAA; R10211; 5; 15;; n. BS GGACCGATGAGTCCT; R10212; 5; 15;; p. BS TGTACACCATGTGCC; R10213; 5; 15;; n. BS GGGTCAGGGTGTTCC; R10214; 5; 15;; p. BS GGAACGTGATGTTCT; R10215; 5; 15;; p. BS GGTTCACGATGTAAT; R10216; 5; 15;; p. BS ATAACGTCCAGTCCC; R10217; 5; 15;; n. BS GGTACGGACTGTGCT; R10218; 5; 15;; p. BS AGTACACTGTGTGCT; R10219; 5; 15;; n. BS GGATCAGGACGTTCT; R10220; 5; 15;; p. BS GGGACAGGCTGTGCT; R10221; 5; 15;; p. BS AGCACGACGCGTTCT; R10222; 5; 15;; p. BS GGTACTCTAAGTTCT; R10223; 5; 15;; p. BS GGTTCATAGTGATCC; R10224; 5; 15;; p. BS CGTACAGAGTGTTCT; R10225; 5; 15;; p. BS GGTACCCTGTGTCCC; R10228; 5; 15;; p. BS TGTACAGGACGGTCC; R10229; 5; 15;; n. BS GGGACATTTTGTTCC; R10325; 1; 15;; n. BS GGTACAGGGTGTTCT; R10326; 5; 15;; p. BS GGTACAACTTGTTCT; R10327; 5; 15;; p. BS GGTACAGGGTGTTCT; R10328; 5; 15;; p. BS GGTACAACTTGTTCT; R10329; 5; 15;; p. XX CC imperfect inverted repeat of two hexameric half-sites (pos. 1-6, pos. 10-15) with a spacer of 3 bp; 4 rounds of selections from a pool of 76 bp oligos containing a random core of 26 nt; absolute frequencies stated XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00482 XX ID V$PITX2_Q2 XX DT 10.09.2001 (created); rio. DT 10.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA PITX2 XX DE pituitary homeobox factor 2 XX BF T02410; Pitx2; Species: mouse, Mus musculus. BF T02413; PITX2; Species: human, Homo sapiens. XX P0 A C G T 01 3 1 0 5 W 02 2 1 3 3 N 03 0 0 0 9 T 04 8 1 0 0 A 05 8 0 1 0 A 06 0 0 1 8 T 07 0 9 0 0 C 08 1 7 1 0 C 09 2 7 0 0 C 10 6 1 1 1 A 11 4 2 3 0 R XX BA 9 compiled genomic binding sites in 3 genes from 2 species XX BS TTTCATCCCTA; R11008; 9; 11;; n. BS TTTAGTCCCAG; R11009; 9; 11;; n. BS ACTAATCAAAA; R11010; 10; 11;; p. BS CTTAAGCCCAA; R11011; 9; 11;; p. BS AATAATCCCAC; R11012; 9; 11;; p. BS TGTAATCCCAG; R11013; 2; 11;; n. BS TGTAATCCCAG; R11014; 9; 11;; p. BS AGTAATCCAGA; R11015; 7; 11;; n. BS TATAATCGCCC; R11016; 15; 11;; p. XX CC TRANSFAC Sites of quality <= 2 XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00483 XX ID V$ATF6_01 XX DT 10.09.2001 (created); rio. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ATF6 XX DE activating transcription factor 6 XX BF T04742; ATF6; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 0 20 T 02 0 0 20 0 G 03 20 0 0 0 A 04 0 20 0 0 C 05 0 0 20 0 G 06 0 0 0 20 T 07 0 2 18 0 G 08 2 0 18 0 G XX BA 20 sites selected from random oligonucleotides XX BS TGACGTGG; R11018; 10; 8;; p. BS TGACGTCA; R11019; 10; 8;; p. BS TGACGTCA; R11020; 10; 8;; p. BS TGACGTGG; R11021; 10; 8;; p. BS TGACGTGG; R11022; 10; 8;; p. BS TGACGTGG; R11023; 10; 8;; p. BS TGACGTGG; R11024; 10; 8;; p. BS TGACGTGG; R11025; 10; 8;; p. BS TGACGTGG; R11026; 10; 8;; p. BS TGACGTGG; R11027; 10; 8;; p. BS TGACGTGG; R11028; 10; 8;; p. BS TGACGTGG; R11029; 10; 8;; p. BS TGACGTGG; R11030; 10; 8;; p. BS TGACGTGG; R11031; 10; 8;; p. BS TGACGTGG; R11032; 10; 8;; p. BS TGACGTGG; R11033; 10; 8;; p. BS TGACGTGG; R11034; 10; 8;; p. BS TGACGTGG; R11035; 10; 8;; p. BS TGACGTGG; R11036; 10; 8;; p. BS TGACGTGG; R11037; 10; 8;; p. XX CC 6 rounds of selection XX RN [1]; RE0016854. RX PUBMED: 10856300. RA Wang Y., Shen J., Arenzana N., Tirasophon W., Kaufman R. J., Prywes R. RT Activation of ATF6 and an ATF6 DNA binding site by the endoplasmic reticulum stress response. RL J. Biol. Chem. 275:27013-27020 (2000). XX // AC M00484 XX ID V$NCX_01 XX DT 12.09.2001 (created); rio. DT 12.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Ncx XX BF T04367; NCX; Species: human, Homo sapiens. BF T04368; Ncx; Species: mouse, Mus musculus. XX P0 A C G T 01 5 17 8 10 N 02 6 8 19 7 N 03 4 2 27 7 G 04 3 5 4 28 T 05 32 6 2 0 A 06 32 4 2 2 A 07 4 5 14 17 K 08 6 3 8 23 T 09 6 6 18 10 N 10 5 7 21 7 G XX BA 40 sites selected from random oligonucleotides XX BS CGGTAAACCC; R11050; 1; 10;; p. BS CGGTAATTAA; R11051; 1; 10;; p. BS GCCTAATTGG; R11052; 1; 10;; p. BS CGGTCATTTT; R11053; 1; 10;; p. BS CGGTAGGCTT; R11054; 1; 10;; p. BS CTGTAAGGCT; R11055; 1; 10;; p. BS CGTTAATAGG; R11056; 1; 10;; p. BS GAGGAATTAG; R11057; 1; 10;; p. BS TATTAATTGG; R11058; 1; 10;; p. BS CGGTCCCGTC; R11059; 1; 10;; p. BS TGGTCATTTG; R11060; 1; 10;; p. BS TATTAACTGC; R11061; 1; 10;; p. BS TGATAATAGG; R11062; 1; 10;; p. BS CCGTATTTCA; R11063; 1; 10;; p. BS AGGAACGAGG; R11064; 1; 10;; p. BS TTATAACGGG; R11065; 1; 10;; p. BS GTGTAGTTCC; R11066; 1; 10;; p. BS ATGTAATGTG; R11067; 1; 10;; p. BS CGGGCCTTGG; R11068; 1; 10;; p. BS CCTAAAGAGA; R11069; 1; 10;; p. BS CTTTAAGTGG; R11070; 1; 10;; p. BS GCGAAATTGG; R11071; 1; 10;; p. BS CGGTAAACCC; R11072; 1; 10;; p. BS TAGTCAGTGT; R11073; 1; 10;; p. BS GGGCAAGGGT; R11074; 1; 10;; p. BS GGGCAATGAT; R11075; 1; 10;; p. BS TGGTAATTAG; R11076; 1; 10;; p. BS GGCTAATTGG; R11077; 1; 10;; p. BS AGGGAATTGG; R11078; 1; 10;; p. BS CTGCGAGTGG; R11079; 1; 10;; p. BS CCGTACGTTC; R11080; 1; 10;; p. BS ATGTAAGAGA; R11081; 1; 10;; p. BS ACGTAAATTG; R11082; 1; 10;; p. BS TGGTCAAATC; R11083; 1; 10;; p. BS TGGTAACGTG; R11084; 1; 10;; p. BS CCATAACTCG; R11085; 1; 10;; p. BS GAGGATGTTT; R11086; 1; 10;; p. BS TATCAAGTAG; R11087; 1; 10;; p. BS CGTCGAGTGA; R11088; 1; 10;; p. BS CCATAAGGAG; R11089; 1; 10;; p. XX CC 6 rounds of selection XX RN [1]; RE0016874. RX PUBMED: 10869550. RA Shimizu H., Kang M., Iitsuka Y., Ichinose M., Tokuhisa T., Hatano M. RT Identification of an optimal Ncx binding sequence required for transcriptional activation RL FEBS Lett. 475:170-174 (2000). XX // AC M00485 XX ID V$NKX22_01 XX DT 12.09.2001 (created); rio. DT 12.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Nkx2-2 XX DE NK2 class homeobox factor 2 XX BF T02384; Nkx2-2; Species: mouse, Mus musculus. BF T04265; Nkx2-2; Species: golden (Syrian) hamster, Mesocricetus auratus. BF T04272; Nkx2-2; Species: chick, Gallus gallus. BF T04337; Nkx2-2; Species: human, Homo sapiens. XX P0 A C G T 01 6 0 0 13 T 02 0 5 1 17 T 03 23 0 0 0 A 04 23 0 0 0 A 05 0 0 23 0 G 06 1 0 0 22 T 07 10 1 12 0 R 08 0 8 11 4 S 09 1 1 0 21 T 10 1 0 0 22 T XX BA 23 sites selected from random oligonucleotides XX BS TTAAGTGGTT; R11092; 1; 10;; p. BS TCAAGTGGAT; R11093; 3; 10;; p. BS ATAAGTACTT; R11094; 6; 10;; p. BS TAAGTGGTT; R11095; 1; 10; 1; p. BS TCAAGAGGTT; R11096; 5; 10;; p. BS TAAGTACTT; R11097; 1; 10; 1; p. BS TTAAGTACTT; R11098; 6; 10;; p. BS ATAAGTACTT; R11099; 6; 10;; p. BS TTAAGTACTT; R11100; 6; 10;; p. BS ATAAGTGTTT; R11101; 1; 10;; p. BS TTAAGTGGTT; R11102; 6; 10;; p. BS TAAGTGTTT; R11103; 1; 10; 1; p. BS TTAAGTGGTT; R11104; 2; 10;; p. BS TCAAGTAGTT; R11105; 4; 10;; p. BS ATAAGTACTT; R11106; 4; 10;; p. BS TCAAGTGTTT; R11107; 4; 10;; p. BS TCAAGTAGTT; R11108; 4; 10;; p. BS TGAAGTCGTT; R11109; 2; 10;; p. BS TTAAGTGGCA; R11110; 5; 10;; p. BS TAAGTGGTT; R11111; 1; 10; 1; p. BS ATAAGTACTT; R11112; 6; 10;; p. BS TTAAGTGTTT; R11113; 3; 10;; p. BS ATAAGTACTT; R11114; 6; 10;; p. XX CC 8 rounds of selection XX RN [1]; RE0016875. RX PUBMED: 10944215. RA Watada H., Mirmira R. G., Kalamaras J., German M. S. RT Intramolecular control of transcriptional activity by the NK2-specific domain in NK-2 homeodomain proteins. RL Proc. Natl. Acad. Sci. USA 97:9443-9448 (2000). XX // AC M00486 XX ID V$PAX2_02 XX DT 14.09.2001 (created); rio. DT 14.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA Pax-2 XX DE paired box factor 2 XX BF T01823; Pax-2; Species: human, Homo sapiens. BF T03013; Pax-2; Species: chick, Gallus gallus. BF T03031; Pax-2.1; Species: zebra fish, Brachydanio rerio. BF T03219; Pax-2.2; Species: zebra fish, Brachydanio rerio. BF T00678; Pax-2a; Species: mouse, Mus musculus. BF T01822; Pax-2b; Species: mouse, Mus musculus. XX P0 A C G T 01 12 12 7 6 N 02 12 9 6 10 N 03 5 10 9 13 N 04 34 0 2 1 A 05 37 0 0 0 A 06 36 0 0 1 A 07 0 20 12 5 S 08 8 12 4 13 N 09 8 17 7 5 N XX BA 37 sites selected from random oligonucleotides XX BS CTTAAACTC; R11116; 19; 9;; p. BS ATCAAACTC; R11117; 20; 9;; p. BS CACAAACTC; R11118; 13; 9;; p. BS CACAAACTC; R11119; 20; 9;; p. BS CACAAACTC; R11120; 20; 9;; p. BS CAGAAACTC; R11121; 20; 9;; p. BS CAGAAACTC; R11122; 20; 9;; p. BS TAATAACGC; R11123; 20; 9;; p. BS CCAAAACGC; R11124; 20; 9;; p. BS GCGAAACAC; R11125; 20; 9;; p. BS ACGAAACAC; R11126; 19; 9;; p. BS AATGAACAC; R11127; 20; 9;; p. BS TAAAAATCA; R11128; 16; 9;; p. BS ACGAAACAT; R11129; 20; 9;; p. BS AGTAAACAG; R11130; 17; 9;; p. BS GTCAAACTG; R11131; 15; 9;; p. BS CATAATCCG; R11132; 20; 9;; p. BS ACTGAACCT; R11133; 20; 9;; p. BS ACGAAACCT; R11134; 20; 9;; p. BS ACGAAACCT; R11135; 20; 9;; p. BS AGCAAACCA; R11136; 19; 9;; p. BS GGCAAAGTC; R11137; 20; 9;; p. BS AGTAAAGTC; R11138; 20; 9;; p. BS CATAAAGTG; R11139; 18; 9;; p. BS TATAAAGTG; R11140; 20; 9;; p. BS GGTAAAGTA; R11141; 20; 9;; p. BS TTGAAAGAA; R11142; 20; 9;; p. BS TCCAAAGAC; R11143; 20; 9;; p. BS CTAAAAGAA; R11144; 16; 9;; p. BS CTTAAAGCC; R11145; 18; 9;; p. BS TGGAAAGCT; R11146; 20; 9;; p. BS GTTAAAGCG; R11147; 20; 9;; p. BS GTTAAAGCG; R11148; 20; 9;; p. BS ATCAAATGA; R11149; 20; 9;; p. BS AATAAATGC; R11150; 14; 9;; p. BS CCAAAATCA; R11151; 20; 9;; p. BS GTCAAATCA; R11152; 18; 9;; p. XX CC 5-8 rounds of selection XX RN [1]; RE0016886. RX PUBMED: 10600536. RA Havik B., Ragnhildstveit E., Lorens J. B., Saelemyr K., Fauske O., Knudsen L. K., Fjose A. RT A novel paired domain DNA recognition motif can mediate Pax2 repression of gene transcription RL Biochim. Biophys. Acta 266:532-541 (1999). XX // AC M00487 XX ID I$MTTFA_01 XX DT 18.09.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA mtTFA XX DE mitochondrial transcription factor A XX BF T04783; mtTFA; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0 1 4 4 K 02 2 3 2 2 N 03 3 6 1 0 C 04 0 0 0 11 T 05 0 0 0 11 T 06 11 0 0 0 A 07 0 0 0 11 T 08 0 9 2 0 C 09 5 3 2 1 N 10 2 3 4 2 N 11 2 3 1 3 N XX BA 11 sites selected from random oligonucleotides XX BS TCCTTATCCAT; R11161; 8; 11;; p. BS GTATTATCCTC; R11162; 13; 11;; p. BS GCATTATCAG; R11163; 17; 11; 27; p. BS CTTATCACA; R11164; 1; 11; 1, 2; p. BS GCCTTATCAGT; R11165; 15; 11;; p. BS TGATTATCGCC; R11166; 7; 11;; p. BS TTCTTATCGG; R11167; 17; 11; 27; p. BS CAGTTATCTAG; R11168; 15; 11;; p. BS TTATCATC; R11169; 1; 11; 1, 2, 3; p. BS TACTTATGCGT; R11170; 9; 11;; p. BS GGCTTATGACA; R11171; 5; 11;; p. XX CC 3 rounds of selection XX RN [1]; RE0016895. RX PUBMED: 11554753. RA Takata K.-I., Yoshida H., Hirose F., Yamaguchi M., Kai M., Oshige M., Sakimoto I., Koiwai O., Sakaguchi K. RT Drosophila Mitochondrial Transcription Factor A: Characterization of Its cDNA and Expression Pattern during Development. RL Biochem. Biophys. Res. Commun. 287:474-483 (2001). XX // AC M00488 XX ID I$DREF_Q3 XX DT 18.09.2001 (created); rio. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA DREF XX DE DNA replication-related element binding factor XX BF T04324; DREF; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 6 1 0 2 A 02 2 3 5 0 S 03 1 6 1 2 C 04 0 0 0 10 T 05 9 0 0 1 A 06 1 0 0 9 T 07 0 10 0 0 C 08 0 0 10 0 G 09 8 0 0 2 A 10 2 0 0 8 T 11 7 0 0 3 A 12 3 0 3 4 D 13 4 1 3 2 N 14 2 2 1 5 Y XX BA 10 compiled genomic binding sites in 4 genes from Drosophila melanogaster XX BS TGTTATCGATATGT; R09869; 4; 14;; p. BS CACTATCGATATTA; R09870; 4; 14;; p. BS ACCTATCGATATAT; R09871; 6; 14;; p. BS AGCTTTCGATAACA; R11160; 6; 14;; p. BS AGTTATCGATTGGC; R11172; 9; 14;; p. BS ACGTAACGATAAAC; R11173; 9; 14;; p. BS AGCTATCGATAGTT; R11174; 9; 14;; p. BS CCTATCGTAATAT; R11175; 1; 14; 1; p. BS TAATATCGAATAGG; R11175; 8; 14;; p. BS AGCTATCGTTTGAT; R11175; 19; 14;; p. XX CC TRANSFAC Sites of quality <= 3 XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00489 XX ID V$NKX62_Q2 XX DT 19.09.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Nkx6-2 XX DE NK related homeobox factor 6-2 XX BF T02050; Nkx6-2; Species: mouse, Mus musculus. BF T04787; Nkx6-2; Species: human, Homo sapiens. XX P0 A C G T 01 2 1 3 1 N 02 3 1 0 3 W 03 4 0 2 1 A 04 3 0 2 2 D 05 0 0 0 7 T 06 7 0 0 0 A 07 7 0 0 0 A 08 3 0 0 4 W 09 1 0 1 5 T 10 4 1 1 1 A 11 1 2 2 2 N 12 1 2 2 2 N XX BA 6 compiled genomic binding sites in 3 genes from 2 species and 1 artificial site XX BS AAGTTAAATATG; R11176; 7; 12;; n. BS CAAATAAATGCT; R11177; 5; 12;; p. BS TTGGTAATATAG; R11178; 5; 12;; p. BS GTATTAATGATT; R11179; 1; 12;; n. BS AAAATAATTCCC; R11180; 5; 12;; p. BS GCTATAAATAGC; R11181; 2; 12;; p. BS GTAGTAATTAGA; R11182; 6; 12;; p. XX CC TRANSFAC Sites of quality <= 2 XX RN [1]; RE0016906. RX PUBMED: 9254678. RA Awatramani R., Scherer S., Grinspan J., Collarini E., Skoff R., O'Hagan D., Garbern J., Kamholz J. RT Evidence that the homeodomain protein Gtx is involved in the regulation of oligodendrocyte myelination RL J. Neurosci. 17:6657-6668 (1997). XX // AC M00490 XX ID V$BACH2_01 XX DT 19.09.2001 (created); rio. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Bach2 XX DE BTB and CNC homolog 2 XX BF T04792; Bach2; Species: mouse, Mus musculus. BF T04795; Bach2; Species: human, Homo sapiens. XX P0 A C G T 01 2 11 7 2 S 02 10 2 13 1 R 03 0 0 2 24 T 04 0 0 25 1 G 05 18 6 1 1 A 06 2 0 24 0 G 07 1 0 1 24 T 08 2 23 1 0 C 09 21 0 1 0 A 10 2 5 3 10 N 11 3 11 5 1 C XX BA 26 sites selected from random oligonucleotides XX CC 4 rounds of selection XX RN [1]; RE0016914. RX PUBMED: 8887638. RA Oyake T., Itoh K., Motohashi H., Hayashi N., Hoshino H., Nishizawa M., Yamamoto M., Igarashi K. RT Bach proteins belong to a novel family of BTB-basic leucine zipper transcription factors that interact with MafK and regulate transcription through the NF-E2 site RL Mol. Cell. Biol. 16:6083-6095 (1996). XX // AC M00491 XX ID V$MAZR_01 XX DT 20.09.2001 (created); rio. DT 20.09.2001 (updated); rio. CO Copyright (C), Biobase GmbH. XX NA MAZR XX DE MAZ related factor XX BF T04796; MAZR; Species: mouse, Mus musculus. BF T04797; MAZR; Species: human, Homo sapiens. XX P0 A C G T 01 12 5 14 11 N 02 5 12 21 0 S 03 6 4 28 1 G 04 2 0 35 2 G 05 3 0 37 0 G 06 6 0 29 4 G 07 0 0 39 0 G 08 1 0 38 0 G 09 0 0 39 0 G 10 0 0 39 0 G 11 12 20 0 7 M 12 9 20 4 6 C 13 17 11 6 5 N XX BA 39 sites selected from random oligonucleotides XX CC 3 rounds of selection XX RN [1]; RE0016921. RX PUBMED: 10669750. RA Kobayashi A., Yamagiwa H., Hoshino H., Muto A., Sato K., Morita M., Hayashi N., Yamamoto M., Igarashi K. RT A combinatorial code for gene expression generated by transcription factor Bach2 and MAZR (MAZ-related factor) through the BTB/POZ domain RL Mol. Cell. Biol. 20:1733-1746 (2000). XX // AC M00492 XX ID V$STAT1_02 XX DT 20.09.2001 (created); vma. DT 16.01.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT1 XX DE signal transducer and activator of transcription 1 XX BF T04759; STAT1; Species: human, Homo sapiens. BF T01575; STAT1alpha; Species: mouse, Mus musculus. XX P0 A C G T 01 6 57 23 14 C 02 62 13 14 11 A 03 26 27 10 36 N 04 2 2 2 95 T 05 2 3 2 93 T 06 5 89 2 4 C 07 2 95 2 2 C 08 2 48 49 2 S XX BA 52 sites selected from random oligonucleotides were presented in both orientations to an HMM training algorithm XX CC only one half of the palindromic binding site is shown; spacer length (including the last two positions shown): N2 (1.5%), N3 (98.5%), N4 (0%) XX RN [1]; RE0016858. RX PUBMED: 11053426. RA Ehret G. B., Reichenbach P., Schindler U., Horvath C. M., Fritz S., Nabholz M., Bucher P. RT DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. RL J. Biol. Chem. 276:6675-6688 (2001). XX // AC M00493 XX ID V$STAT5A_03 XX DT 20.09.2001 (created); vma. DT 16.01.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT5A XX DE signal transducer and activator of transcription 5a XX BF T04683; STAT5A; Species: human, Homo sapiens. BF T01579; STAT5A; Species: mouse, Mus musculus. XX P0 A C G T 01 23 26 17 33 N 02 54 11 17 19 A 03 37 5 13 46 W 04 2 2 2 93 T 05 11 4 2 82 T 06 3 93 2 2 C 07 5 57 8 30 Y 08 29 22 20 29 N XX BA 39 sites selected from random oligonucleotides were presented in both orientations to an HMM training algorithm XX CC only one half of the palindromic binding site is shown; spacer length (including the last two positions shown): N2 (0%), N3 (97%), N4 (3%) XX RN [1]; RE0016858. RX PUBMED: 11053426. RA Ehret G. B., Reichenbach P., Schindler U., Horvath C. M., Fritz S., Nabholz M., Bucher P. RT DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. RL J. Biol. Chem. 276:6675-6688 (2001). XX // AC M00494 XX ID V$STAT6_01 XX DT 20.09.2001 (created); vma. DT 16.01.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT6 XX DE signal transducer and activator of transcription 6 XX BF T01581; STAT6; Species: mouse, Mus musculus. BF T01580; STAT6; Species: human, Homo sapiens. XX P0 A C G T 01 23 22 13 42 N 02 51 3 21 25 A 03 33 4 19 44 W 04 3 3 2 92 T 05 5 3 2 89 T 06 11 82 4 3 C 07 18 53 14 14 C 08 35 18 23 25 N XX BA 45 sites selected from random oligonucleotides were presented in both orientations to an HMM training algorithm XX CC only one half of the palindromic binding site is shown; spacer length (including the last two positions shown): N2 (0%), N3 (7.5%), N4 (92.5%) XX RN [1]; RE0016858. RX PUBMED: 11053426. RA Ehret G. B., Reichenbach P., Schindler U., Horvath C. M., Fritz S., Nabholz M., Bucher P. RT DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. RL J. Biol. Chem. 276:6675-6688 (2001). XX // AC M00495 XX ID V$BACH1_01 XX DT 20.09.2001 (created); mas. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Bach1 XX DE BTB and CNC homolog 1 XX BF T04791; Bach1; Species: human, Homo sapiens. BF T04793; Bach1; Species: mouse, Mus musculus. XX P0 A C G T 01 13 5 7 2 N 02 6 9 6 6 N 03 3 9 12 3 S 04 20 1 6 0 A 05 0 0 0 27 T 06 0 0 27 0 G 07 27 0 0 0 A 08 0 0 27 0 G 09 0 0 0 27 T 10 0 27 0 0 C 11 27 0 0 0 A 12 1 3 1 22 T 13 4 6 14 3 G 14 7 9 7 4 N 15 2 7 4 14 T XX BA 27 binding sites selected from random oligonucleotides (sequences not published) XX CC matrix taken from reference, consensus acc. to rules under documentation (Cavener, Nucleic Acids Res. 15:1353-1361, 1987); palindromic core of 9 bp (pos. 4-12); 5 rounds of selection from a pool of 69 bp oligos (random core of 30 nt); absol. frequencies XX RN [1]; RE0016918. RX PUBMED: 11069897. RA Kanezaki R., Toki T., Yokoyama M., Yomogida K., Sugiyama K., Yamamoto M., Igarashi K., Ito E. RT Transcription factor BACH1 is recruited to the nucleus by its novel alternative spliced isoform RL J. Biol. Chem. 276:7278-7284 (2001). XX // AC M00496 XX ID V$STAT1_03 XX DT 20.09.2001 (created); vma. DT 20.09.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT1 XX DE signal transducer and activator of transcription 1 XX BF T04759; STAT1; Species: human, Homo sapiens. BF T01575; STAT1alpha; Species: mouse, Mus musculus. XX P0 A C G T 01 23 33 35 10 N 02 38 17 17 27 N 03 15 13 12 60 T 04 0 0 4 96 T 05 2 0 2 96 T 06 29 67 4 0 C 07 8 56 15 21 C 08 19 31 31 19 N XX BA 52 compiled genomic half-sites (base frequencies are presented in percent) XX RN [1]; RE0016858. RX PUBMED: 11053426. RA Ehret G. B., Reichenbach P., Schindler U., Horvath C. M., Fritz S., Nabholz M., Bucher P. RT DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. RL J. Biol. Chem. 276:6675-6688 (2001). XX // AC M00497 XX ID V$STAT3_02 XX DT 20.09.2001 (created); vma. DT 20.09.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT3 XX DE signal transducer and activator of transcription 3 XX BF T01493; STAT3; Species: human, Homo sapiens. BF T01574; STAT3; Species: mouse, Mus musculus. XX P0 A C G T 01 17 29 31 23 N 02 31 19 33 17 N 03 31 31 23 15 N 04 2 4 6 88 T 05 4 0 10 85 T 06 8 85 2 4 C 07 2 75 2 21 C 08 15 38 31 17 N XX BA 48 compiled genomic half-sites (base frequencies are presented in percent) XX RN [1]; RE0016858. RX PUBMED: 11053426. RA Ehret G. B., Reichenbach P., Schindler U., Horvath C. M., Fritz S., Nabholz M., Bucher P. RT DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. RL J. Biol. Chem. 276:6675-6688 (2001). XX // AC M00498 XX ID V$STAT4_01 XX DT 20.09.2001 (created); vma. DT 20.09.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT4 XX DE signal transducer and activator of transcription 4 XX BF T01577; STAT4; Species: human, Homo sapiens. BF T01576; STAT4; Species: mouse, Mus musculus. XX P0 A C G T 01 0 33 50 17 S 02 50 17 17 17 N 03 33 17 0 50 W 04 0 0 0 100 T 05 0 0 0 100 T 06 17 83 0 0 C 07 17 33 17 33 N 08 33 17 17 33 N XX BA 6 compiled genomic half-sites (base frequencies are presented in percent) XX RN [1]; RE0016858. RX PUBMED: 11053426. RA Ehret G. B., Reichenbach P., Schindler U., Horvath C. M., Fritz S., Nabholz M., Bucher P. RT DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. RL J. Biol. Chem. 276:6675-6688 (2001). XX // AC M00499 XX ID V$STAT5A_04 XX DT 20.09.2001 (created); vma. DT 20.09.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT5A XX DE signal transducer and activator of transcription 5a XX BF T04683; STAT5A; Species: human, Homo sapiens. BF T01579; STAT5A; Species: mouse, Mus musculus. XX P0 A C G T 01 21 32 31 16 N 02 40 15 11 34 N 03 18 29 18 35 N 04 0 0 0 100 T 05 0 0 0 100 T 06 5 95 0 0 C 07 2 35 6 56 Y 08 29 21 21 29 N XX BA 62 compiled genomic half-sites (base frequencies are presented in percent) XX RN [1]; RE0016858. RX PUBMED: 11053426. RA Ehret G. B., Reichenbach P., Schindler U., Horvath C. M., Fritz S., Nabholz M., Bucher P. RT DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. RL J. Biol. Chem. 276:6675-6688 (2001). XX // AC M00500 XX ID V$STAT6_02 XX DT 20.09.2001 (created); vma. DT 20.09.2001 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA STAT6 XX DE signal transducer and activator of transcription 6 XX BF T01581; STAT6; Species: mouse, Mus musculus. BF T01580; STAT6; Species: human, Homo sapiens. XX P0 A C G T 01 23 23 41 14 N 02 36 32 18 14 N 03 9 45 5 41 Y 04 0 0 0 100 T 05 5 0 0 95 T 06 0 100 0 0 C 07 14 59 0 27 C 08 14 36 5 45 Y XX BA 22 compiled genomic half-sites (base frequencies are presented in percent) XX RN [1]; RE0016858. RX PUBMED: 11053426. RA Ehret G. B., Reichenbach P., Schindler U., Horvath C. M., Fritz S., Nabholz M., Bucher P. RT DNA binding specificity of different STAT proteins. Comparison of in vitro specificity with natural target sites. RL J. Biol. Chem. 276:6675-6688 (2001). XX // AC M00501 XX ID P$ANT_01 XX DT 26.09.2001 (created); rge. DT 26.09.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA ANT XX BF T02639; ANT; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 0 30 0 2 C 02 28 1 2 1 A 03 0 32 0 0 C 04 21 1 10 0 A 05 9 5 15 5 N 06 16 1 1 16 W 07 0 2 1 31 T 08 5 24 0 5 C 09 0 34 0 0 C 10 0 32 0 1 C 11 7 1 13 2 R 12 21 0 0 1 A 13 3 0 10 9 K 14 2 0 20 0 G XX BA 34 artificial sequences XX BS CGCAATTCCCGATG; R11188; 5; 14;; p. BS CACGGTTCCCAAAG; R11189; 5; 14;; p. BS GTTCCCGAGG; R11190; 1; 14; 1, 2, 3, 4; p. BS CACAGTTCCC; R11191; 7; 14; 17, 18, 19, 20; p. BS CACAAATCCC; R11192; 7; 14; 17, 18, 19, 20; p. BS CACGACTCCC; R11193; 7; 14; 17, 18, 19, 20; p. BS GTTCCCGAGG; R11194; 1; 14; 1, 2, 3, 4; p. BS CACAAACTCCGATG; R11195; 3; 14;; p. BS CACAGATCCC; R11196; 7; 14; 17, 18, 19, 20; p. BS CACGCATCC; R11197; 7; 14; 16, 17, 18, 19, 20; p. BS CTCAGTTCCC; R11198; 7; 14; 17, 18, 19, 20; p. BS CACGGATCCCAAGG; R11199; 7; 14;; p. BS CACGGATCCCGAGG; R11200; 7; 14;; p. BS CACATATCCCGATG; R11201; 4; 14;; p. BS CACACTTACCGAGG; R11202; 2; 14;; p. BS CACGTTTCCC; R11203; 7; 14; 17, 18, 19, 20; p. BS TGCGTTTCCCAAAG; R11204; 3; 14;; p. BS CACAAATCCCAATG; R11205; 6; 14;; p. BS CACACTTACCGAGG; R11206; 2; 14;; p. BS CACAAACTCCGATG; R11207; 3; 14;; p. BS CACGGTTCCCGATA; R11208; 3; 14;; p. BS CACAGTTCCCCAAG; R11209; 3; 14;; p. BS CACACTTCCCAAGA; R11210; 2; 14;; p. BS CACAGTTACC; R11211; 7; 14; 17, 18, 19, 20; p. BS CACGCTTTCCA; R11212; 7; 14; 18, 19, 20; p. BS CACATATCCCGATG; R11213; 4; 14;; p. BS CACAAATCCCAATG; R11214; 6; 14;; p. BS CACAGATTCT; R11215; 7; 14; 17, 18, 19, 20; p. BS CACAAAGTCCGATG; R11216; 3; 14;; p. BS CACATATCCCTAGG; R11217; 1; 14;; p. BS CACAGGTCCC; R11218; 7; 14; 17, 18, 19, 20; p. BS TCCCAATACCTTGG; R11219; 6; 14;; p. BS CACAGTTACC; R11220; 7; 14; 17, 18, 19, 20; p. BS CACGGATCCCGAGG; R11221; 7; 14;; p. XX CC random oligonucleotide selection method: 18 rounds of selection XX RN [1]; RE0016932. RX PUBMED: 11058102. RA Nole-Wilson S., Krizek B. A. RT DNA binding properties of the Arabidopsis floral development protein AINTEGUMENTA RL Nucleic Acids Res. 28:4076-4082 (2000). XX // AC M00502 XX ID P$TEIL_01 XX DT 27.09.2001 (created); rge. DT 18.10.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA TEIL XX BF T04804; TEIL; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 70 6 6 5 A 02 1 21 0 65 T 03 0 1 86 0 G 04 31 12 3 41 W 05 86 0 1 0 A 06 1 49 2 35 Y 07 5 61 13 8 C 08 3 8 4 72 T XX BA 87 artificial sequences XX CC random oligomer binding selection assay XX RN [1]; RE0016934. RX PUBMED: 10648789. RA Kosugi S., Ohashi Y. RT Cloning and DNA-binding properties of a tobacco Ethylene-Insensitive3 (EIN3) homolog RL Nucleic Acids Res. 28:960-967 (2000). XX // AC M00503 XX ID P$ATHB5_01 XX DT 27.09.2001 (created); rge. DT 27.09.2001 (updated); rge. CO Copyright (C), Biobase GmbH. XX NA ATHB-5 XX BF T04066; ATHB-5; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 1 31 4 3 C 02 31 6 0 2 A 03 37 0 0 2 A 04 1 0 0 38 T 05 2 7 8 22 T 06 37 0 0 2 A 07 0 0 1 38 T 08 0 0 1 37 T 09 0 0 5 1 G XX BA 39 artificial sequences XX BS TAATCATT; R11227; 5; 9; 13; p. BS CAATCATT; R11229; 5; 9; 13; p. BS CAATTATT; R11230; 5; 9; 13; p. BS TAATTATTG; R11231; 4; 9;; p. BS CAATGATT; R11232; 5; 9; 13; p. BS CATTGTTG; R11233; 5; 9; 13; p. BS CAATTATT; R11234; 4; 9; 12; p. BS ATTATTG; R11235; 5; 9; 12, 13; p. BS GCATTATT; R11236; 5; 9; 13; p. BS CAATTATT; R11237; 5; 9; 13; p. BS CAATAATT; R11238; 5; 9; 13; p. BS CAATAATT; R11239; 5; 9; 13; p. BS CTATTATT; R11240; 5; 9; 13; p. BS CAATCATTG; R11241; 4; 9;; p. BS CAATGATT; R11242; 5; 9; 13; p. BS CAATTATT; R11243; 5; 9; 13; p. BS CAATGATT; R11244; 5; 9; 13; p. BS TAATGATT; R11245; 5; 9; 13; p. BS CAATCATTG; R11246; 3; 9;; p. BS CAATTATT; R11247; 5; 9; 13; p. BS CAATTATT; R11248; 5; 9; 13; p. BS CAATTATT; R11249; 5; 9; 13; p. BS GAATTATT; R11250; 5; 9; 13; p. BS GCATGATT; R11251; 5; 9; 13; p. BS CAATGATT; R11252; 5; 9; 13; p. BS CCATTATT; R11253; 5; 9; 13; p. BS CAATTATT; R11254; 5; 9; 13; p. BS CAATCATTG; R11255; 4; 9;; p. BS CCATTATT; R11256; 5; 9; 13; p. BS GCATTATT; R11257; 5; 9; 13; p. BS CAATGATT; R11258; 5; 9; 13; p. BS CAATTATT; R11259; 5; 9; 13; p. BS CAATTATT; R11260; 5; 9; 13; p. BS CCATTATT; R11261; 5; 9; 13; p. BS CAATTATT; R11262; 5; 9; 13; p. BS CAATCATTT; R11263; 1; 9;; p. BS CAATTATTG; R11264; 1; 9;; p. BS CAATTATT; R11265; 5; 9; 13; p. BS CAATCATT; R11266; 5; 9; 13; p. XX CC 4 rounds of selection in an oligomer binding site selection assay XX RN [1]; RE0016935. RX PUBMED: 11247607. RA Johannesson H., Wang Y., Engstrom P. RT DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro RL Plant Mol. Biol. 45:63-73 (2001). XX // AC M00506 XX ID P$LIM1_01 XX DT 17.10.2001 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA LIM1 XX BF T04817; LIM1; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 1 17 0 2 C 02 2 15 1 2 C 03 14 1 1 4 A 04 3 15 1 1 C 05 5 10 3 2 C 06 14 0 0 6 A 07 8 5 3 4 N 08 10 6 2 2 M 09 4 8 3 5 N 10 4 9 1 6 N 11 5 11 2 2 C 12 2 6 5 7 N XX BA 20 artificial sequences XX BS CAACCACTAAAG; R11284; 5; 12;; p. BS TCTCAAGACCCC; R11286; 5; 12;; p. BS CGACCACAATAG; R11287; 5; 12;; p. BS CCAATACTGGAC; R11288; 5; 12;; p. BS CCTCATACTCAT; R11289; 5; 12;; p. BS CCATCAAGCTCT; R11290; 5; 12;; p. BS CCACTATCACCC; R11291; 5; 12;; p. BS CTCCCAAGCCCA; R11292; 5; 12;; p. BS AAACCAAACTCT; R11293; 5; 12;; p. BS CCACCTTCTCTG; R11294; 5; 12;; p. BS CCACGTCACCCC; R11295; 5; 12;; p. BS CCACATAAGCCT; R11296; 5; 12;; p. BS CCACCTTCTCTG; R11297; 5; 12;; p. BS CCGACAAACACT; R11298; 5; 12;; p. BS CCACCACATTGG; R11299; 5; 12;; p. BS CTTGGAAACTCC; R11300; 5; 12;; p. BS TCACAAGCCTCT; R11301; 5; 12;; p. BS CCACATGCAACT; R11302; 5; 12;; p. BS CCTCCAAATCAC; R11303; 5; 12;; p. BS CCAAGATAGAGA; R11304; 5; 12;; p. XX CC 5 rounds of selection in random oligo binding assay XX RN [1]; RE0016954. RX PUBMED: 10849346. RA Kawaoka A., Kaothien P., Yoshida K., Endo S., Yamada K., Ebinuma H. RT Functional analysis of tobacco LIM protein Ntlim1 involved in lignin biosynthesis RL Plant J. 22:289-301 (2000). XX // AC M00507 XX ID P$TRAB1_Q2 XX DT 23.10.2001 (created); rge. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TRAB1 XX BF T04821; TRAB1; Species: rice, Oryza sativa. XX P0 A C G T 01 1 1 3 1 N 02 0 1 3 2 K 03 5 1 0 0 A 04 0 6 0 0 C 05 0 0 6 0 G 06 0 3 0 3 Y 07 0 0 6 0 G 08 0 1 1 4 T 09 0 2 4 0 G 10 0 1 3 1 G 11 0 5 0 0 C XX BA 5 genomic and 1 aritificial binding sequences XX BS ACACGTGGC; R03678; 3; 11; 12, 13; p. BS GTACGTGTCGC; R08448; 10; 11;; p. BS GTACGTGCGCC; R08450; 8; 11;; p. BS GGACGCGTGGC; R09129; 1; 11;; p. BS CGACGCGTGTC; R11336; 7; 11;; p. BS TGCCGCGTGGC; R11337; 7; 11;; p. XX CC compiled sequences XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00510 XX ID V$LHX3_01 XX DT 31.10.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Lhx3 XX DE LIM homeobox transcription factor 3 XX BF T01964; Lhx3a; Species: mouse, Mus musculus. BF T03446; LHX3a; Species: human, Homo sapiens. BF T03447; LHX3b; Species: human, Homo sapiens. BF T04840; Lhx3b; Species: mouse, Mus musculus. XX P0 A C G T 01 32 5 2 1 A 02 22 2 5 11 A 03 0 0 4 36 T 04 0 0 0 40 T 05 40 0 0 0 A 06 40 0 0 0 A 07 0 1 0 39 T 08 1 2 1 36 T 09 34 1 0 5 A 10 23 4 6 7 A XX BA 40 sites selected from random oligonucleotides XX BS AATTAATTAG; R11390; 5; 10;; p. BS AATTAATTAT; R11391; 9; 10;; p. BS CTGTAATTAA; R11392; 5; 10;; p. BS TGTTAATTAA; R11393; 5; 10;; p. BS AATTAACTTT; R11394; 4; 10;; p. BS ATTTAATTAA; R11395; 8; 10;; p. BS AATTAATTAA; R11396; 6; 10;; p. BS AATTAATTAA; R11397; 6; 10;; p. BS AATTAATTCG; R11398; 10; 10;; p. BS CATTAATTAA; R11399; 5; 10;; p. BS CTTTAATTAA; R11400; 4; 10;; p. BS AATTAATTAA; R11401; 4; 10;; p. BS ATTTAATTAA; R11402; 10; 10;; p. BS AATTAATTAA; R11403; 10; 10;; p. BS AATTAATTAG; R11404; 4; 10;; p. BS AATTAATTAA; R11405; 6; 10;; p. BS AATTAATTAT; R11406; 8; 10;; p. BS AATTAATTTT; R11407; 10; 10;; p. BS AATTAATTAG; R11408; 4; 10;; p. BS CATTAATTAA; R11409; 5; 10;; p. BS AATTAATTTA; R11410; 10; 10;; p. BS ATTTAATTAA; R11411; 7; 10;; p. BS AGTTAATTAG; R11412; 10; 10;; p. BS ATTTAATTAA; R11413; 6; 10;; p. BS ATGTAATTAA; R11414; 3; 10;; p. BS GCGTAATTAC; R11415; 2; 10;; p. BS GCGTAATTAC; R11416; 2; 10;; p. BS AATTAATGTG; R11417; 10; 10;; p. BS AATTAATTAC; R11418; 9; 10;; p. BS AGTTAATTAT; R11419; 10; 10;; p. BS AATTAATTAT; R11420; 5; 10;; p. BS ATTTAATTAA; R11421; 6; 10;; p. BS AGTTAATTAA; R11422; 5; 10;; p. BS ATTTAATTAA; R11423; 10; 10;; p. BS ATTTAATTAA; R11424; 6; 10;; p. BS AGTTAATCAA; R11425; 4; 10;; p. BS CATTAATTAT; R11426; 6; 10;; p. BS ATTTAATTAA; R11427; 6; 10;; p. BS AATTAATCAC; R11428; 4; 10;; p. BS AATTAATATA; R11429; 3; 10;; p. XX CC 5 rounds of selection XX RN [1]; RE0017016. RX PUBMED: 11602361. RA Bridwell J. L., Price J. R., Parker G. E., McCutchan Schiller A., Sloop K. W., Rhodes S. J. RT Role of the LIM domains in DNA recognition by the Lhx3 neuroendocrine transcription factor. RL Gene 277:239-250 (2001). XX // AC M00511 XX ID V$ERR1_Q2 XX DT 05.11.2001 (created); mas. DT 06.11.2001 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA ERR alpha XX DE estrogen-related receptor alpha XX BF T02765; ERR1; Species: human, Homo sapiens. BF T04849; ERR1; Species: mouse, Mus musculus. XX P0 A C G T 01 9 4 4 8 N 02 4 6 8 7 N 03 8 7 5 5 N 04 5 2 3 15 T 05 8 10 6 1 N 06 16 1 6 2 A 07 23 1 0 1 A 08 0 0 25 0 G 09 0 0 25 0 G 10 3 0 0 22 T 11 0 23 2 0 C 12 23 1 0 1 A 13 5 6 5 9 N 14 11 4 4 6 N XX BA 25 binding sites selected from random oligonucleotides XX BS GCCTCAAGGTCACC; R11448; 18; 14;; p. BS TAGCGAAGGTCAAG; R11453; 7; 14;; p. BS TTAGCAAGGTCATG; R11454; 11; 14;; p. BS CGGTAGAGGTCACC; R11455; 13; 14;; p. BS GTGACAAGGTCAGA; R11456; 15; 14;; p. BS GGTTAGCGGTCATT; R11457; 4; 14;; p. BS AAATAAAGGTCATT; R11458; 10; 14;; p. BS ACTACAAGGTCACG; R11459; 4; 14;; p. BS GGATGAAGGTCAGA; R11460; 16; 14;; p. BS TGAGAAAGGTGCCA; R11461; 4; 14;; p. BS TCCTGAAGGTCATT; R11462; 17; 14;; p. BS AAGGGCAGGACAAA; R11463; 6; 14;; p. BS CTTTAGAGGTCACA; R11464; 13; 14;; p. BS ACATCTAGGACATT; R11465; 4; 14;; p. BS TGTACAAGGTCAAA; R11466; 14; 14;; p. BS CCATGAAGGTGATA; R11467; 16; 14;; p. BS ATCACAAGGTCAGA; R11468; 4; 14;; p. BS AGATATTGGTCATC; R11469; 4; 14;; p. BS TCATAGAGGTCTTC; R11470; 11; 14;; p. BS TTCTCAAGGTCAGA; R11471; 11; 14;; p. BS AGCTCGAGGTCACT; R11472; 2; 14;; p. BS AATAGAAGGTCAAA; R11473; 11; 14;; p. BS TTCCAAAGGACAGG; R11474; 14; 14;; p. BS AGCTCGAGGTCATT; R11475; 2; 14;; p. BS CTGTTAAGGTCAAA; R11476; 4; 14;; p. XX CC 8 rounds of selections (PCR-based) containing a random core of 30 nt with two primers of 20 nt each; contains a potential hexamer half-site for nuclear receptor binding (pos. 7-12) XX RN [1]; RE0017042. RX PUBMED: 9271417. RA Sladek R., Bader J. A., Giguere V. RT The orphan nuclear receptor estrogen-related receptor alpha is a transcriptional regulator of the human medium-chain acyl coenzyme A dehydrogenase gene RL Mol. Cell. Biol. 17:5400-5409 (1997). XX // AC M00512 XX ID V$PPARG_01 XX DT 06.11.2001 (created); mas. DT 07.12.2001 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA PPARG XX DE PPAR-gamma (peroxisome proliferator-activated receptor gamma) XX BF T01354; PPAR-gamma; Species: clawed frog, Xenopus laevis. BF T02736; PPAR-gamma1; Species: human, Homo sapiens. BF T02529; PPAR-gamma1; Species: mouse, Mus musculus. BF T04794; PPAR-gamma1; Species: cattle, Bos taurus. BF T03731; PPAR-gamma2; Species: human, Homo sapiens. BF T04780; PPAR-gamma2; Species: cattle, Bos taurus. XX P0 A C G T 01 14 16 13 17 N 02 12 21 14 16 N 03 32 6 9 17 W 04 19 3 45 3 G 05 31 0 41 0 R 06 0 0 72 0 G 07 0 0 71 1 G 08 0 0 0 72 T 09 0 70 2 0 C 10 72 0 0 0 A 11 72 0 0 0 A 12 71 0 1 0 A 13 0 0 72 0 G 14 0 0 70 2 G 15 0 0 0 72 T 16 0 69 1 2 C 17 70 0 2 0 A 18 16 20 2 20 N 19 17 21 15 3 N 20 8 15 13 13 N 21 14 2 16 12 N XX BA 72 binding sites selected from random oligonucleotides XX BS TACAGGTCAAAGTTCA; R11480; 1; 21; 1, 18, 19, 20, 21; p. BS CAAAGGGTCAAAGGTCAGACA; R11481; 1; 21;; p. BS CTAAAGGTCAAAGGTCAACGA; R11482; 1; 21;; p. BS TCTGAGGTCAAAGGTCACTAG; R11483; 1; 21;; p. BS TCAAAGGTCAAAGGTCAAGAG; R11484; 1; 21;; p. BS TCGTAGGTGAAAGGTCA; R11485; 1; 21; 18, 19, 20, 21; p. BS CAAAAGGTCAAAGGTCAAAGT; R11486; 1; 21;; p. BS AGTGGGGTCAAAGGTCACAGA; R11487; 1; 21;; p. BS CGGGGTCAAAGGTCAACCT; R11488; 1; 21; 1, 2; p. BS CCAGGGGTCAAAGGTCAACCC; R11489; 1; 21;; p. BS GGGGTCAAAGGTCAC; R11490; 1; 21; 1, 2, 3, 19, 20, 21; p. BS GAAAAGGTCAAAGGTCA; R11491; 1; 21; 18, 19, 20, 21; p. BS AGGTCAAAGTTCATACT; R11492; 1; 21; 1, 2, 3, 4; p. BS CGAGGGGTCAAAGGTGA; R11493; 1; 21; 18, 19, 20, 21; p. BS GGTGGGGTCAAAGGTCATGCG; R11494; 1; 21;; p. BS TCAAAGGTCAAAGGTCAACCA; R11495; 1; 21;; p. BS CTAGGGGTCAAAGGTCACCGG; R11496; 1; 21;; p. BS GCTGGGGTCAAAGGTCAACTG; R11497; 1; 21;; p. BS AATGGGGTCAAAGGTCGCGCG; R11498; 1; 21;; p. BS TTGGAGGTCAAAGGTCATAGT; R11499; 1; 21;; p. BS AACGAGGTCAAAGGTCAAATA; R11500; 1; 21;; p. BS GCAAAGGTCAAAGGTCATCGG; R11501; 1; 21;; p. BS ACAGAGGTCAAAGGTCATTCA; R11502; 1; 21;; p. BS TGAAAGGTGAAAGGTCA; R11503; 1; 21; 18, 19, 20, 21; p. BS CACAAGGTCAAAGGTCACA; R11504; 1; 21; 20, 21; p. BS ACAGGGGTCAAAGGTCACTG; R11505; 1; 21; 21; p. BS GGAGGGGTCAAAGGTCATGGG; R11506; 1; 21;; p. BS GTTAAGGTCAAAGGTCACCA; R11507; 1; 21; 21; p. BS CGGGAGGTCAAAGGTCATAGA; R11508; 1; 21;; p. BS CCAAAGGTCAAAGGTCAAAGG; R11509; 1; 21;; p. BS GGTGAGTTCAAAGGTCA; R11510; 1; 21; 18, 19, 20, 21; p. BS GGGGTCAAAGGTCATGGG; R11511; 1; 21; 1, 2, 3; p. BS TAGGGGTCAAAGGTCACGCT; R11512; 1; 21; 1; p. BS TAAGGGGTCAAGGGTCA; R11513; 1; 21; 18, 19, 20, 21; p. BS ACGGGGGTCAAAGGTCACCGA; R11514; 1; 21;; p. BS CTAGGGGTCAAAGGTCA; R11515; 1; 21; 18, 19, 20, 21; p. BS TTTGGGGTCAAAGGTCATCTA; R11516; 1; 21;; p. BS GGAGGGGTCAAAGGTCA; R11517; 1; 21; 18, 19, 20, 21; p. BS ACAGAGGTCAAAGGTCACC; R11518; 1; 21; 20, 21; p. BS CATGGGGTCAAAGGTCATG; R11519; 1; 21; 20, 21; p. BS ACGCGGGTCAAAGGTCAAA; R11520; 1; 21; 20, 21; p. BS TGTGGGGTCAAAGGTCACACG; R11521; 1; 21;; p. BS AGCGGGGTCAAAGGTCAACTT; R11522; 1; 21;; p. BS GAGGTCAAAGGTCATCCG; R11523; 1; 21; 1, 2, 3; p. BS ACGGGGGTCAAAGGTCA; R11524; 1; 21; 18, 19, 20, 21; p. BS CCAAAGGTCAAAGGTCATGG; R11525; 1; 21; 21; p. BS GGGGTCAAAGGTCAAGTG; R11526; 1; 21; 1, 2, 3; p. BS GTGAAGGTCAAAGGTCACGTC; R11527; 1; 21;; p. BS TATAAGGTCAAAGGTCACC; R11528; 1; 21; 20, 21; p. BS CCCAAGGTCAAAGGTCATGCA; R11529; 1; 21;; p. BS TGAGGGGTCAAAGGTCATAAG; R11530; 1; 21;; p. BS AAAGAGGTCAAAGGTCACC; R11531; 1; 21; 20, 21; p. BS GGGGTCAAAGGTCATGCG; R11532; 1; 21; 1, 2, 3; p. BS ATAGGGGTCAAAGGTCATCTT; R11533; 1; 21;; p. BS TTAGGGGTCAAAGGTCATGA; R11534; 1; 21; 21; p. BS GCTTGGGTCAAAGGTCA; R11535; 1; 21; 18, 19, 20, 21; p. BS GAAAGGGTCAAAGGTCAA; R11536; 1; 21; 19, 20, 21; p. BS CATAAGGTCAAAGGTCACACA; R11537; 1; 21;; p. BS GGGGTCAAAGGTCACATA; R11538; 1; 21; 1, 2, 3; p. BS CTTGGGGTCAAAGGTCACAC; R11539; 1; 21; 21; p. BS CAGGGGTCAAAGGTCAAGTT; R11540; 1; 21; 1; p. BS CCACAGGTCAAAGGTCACC; R11541; 1; 21; 20, 21; p. BS GGGTCAAAGGTCAACAA; R11542; 1; 21; 1, 2, 3, 4; p. BS ATTGGGGTCAAAGGTCGGATT; R11543; 1; 21;; p. BS TCAAAGGTCAAAGGTTATCTT; R11544; 1; 21;; p. BS TCGGAGGTCAAAGGTCA; R11545; 1; 21; 18, 19, 20, 21; p. BS GGGTAGGTCAAAGGTCA; R11546; 1; 21; 18, 19, 20, 21; p. BS ATAGGGGTCAAAGGTCATCTA; R11547; 1; 21;; p. BS TTTGGGGTCAAAGGTCACGAT; R11548; 1; 21;; p. BS GGAGGGGTCAAAGGTCAAATT; R11549; 1; 21;; p. BS TTCGGGGTCAAAGGTTATCAG; R11550; 1; 21;; p. BS TGTAGGGTCAAAGGTCA; R11551; 1; 21; 18, 19, 20, 21; p. XX CC 5 rounds of selection; direct repeat of two hexameric half-sites (pos. 5-10 and 12-17) with a spacer of 1 bp; bound by PPAR-gamma/RXR-alpha heterodimer; absolute frequencies stated XX RN [1]; RE0017041. RX PUBMED: 11139380. RA Okuno M., Arimoto E., Ikenobu Y., Nishihara T., Imagawa M. RT Dual DNA-binding specificity of peroxisome-proliferator-activated receptor gamma controlled by heterodimer formation with retinoid X receptor alpha RL Biochem. J. 353:193-198 (2001). XX // AC M00513 XX ID V$ATF3_Q6 XX DT 06.11.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA ATF3 XX DE activating transcription factor 3 XX BF T01095; ATF3; Species: rat, Rattus norvegicus. BF T01313; ATF3; Species: human, Homo sapiens. BF T04850; ATF3; Species: mouse, Mus musculus. XX P0 A C G T 01 1 3 1 1 C 02 0 2 2 3 B 03 1 4 2 0 C 04 0 0 0 11 T 05 0 0 10 1 G 06 10 1 0 0 A 07 0 9 1 1 C 08 1 0 7 0 G 09 0 0 0 10 T 10 0 9 1 0 C 11 8 0 0 2 A 12 1 2 2 3 N 13 0 5 1 1 C 14 0 3 4 0 S XX BA 9 compiled genomic binding sites from 7 genes and 2 artificial sequences XX BS TGACGT; R00362; 1; 14; 1, 2, 3, 10, 11, 12, 13, 14; n. BS TGACGTCATGG; R00592; 1; 14; 1, 2, 3; p. BS CTCTGACGTCTCCC; R00777; 4; 14;; p. BS CCCTGACGTGTCCC; R00779; 4; 14;; p. BS TGCG TCA; R01258; 1; 14; 1, 2, 3, 8, 12, 13, 14; p. BS GCTGACGTCAG; R01358; 1; 14; 1, 13, 14; p. BS CTATGAC TCATCC; R03668; 11; 14; 18; p. BS ACGTGAC TCAGCG; R03924; 4; 14; 11; p. BS GGGTGATG CAACG; R11477; 1; 14; 9; p. BS TTCTGACATCATTG; R11552; 11; 14;; p. BS TTACGTCA; R11553; 1; 14; 1, 2, 3, 12, 13, 14; p. XX CC TRANSFAC Sites of quality <= 6 XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00514 XX ID V$ATF4_Q2 XX DT 06.11.2001 (created); rio. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA ATF4 XX DE activating transcription factor 4 XX BF T01303; ATF-4; Species: human, Homo sapiens. BF T04854; ATF4; Species: mouse, Mus musculus. BF T02052; ATF4 (381AA); Species: mouse, Mus musculus. XX P0 A C G T 01 0 4 2 0 C 02 2 3 2 0 V 03 0 0 0 7 T 04 0 0 6 1 G 05 6 0 1 0 A 06 0 7 0 0 C 07 0 0 5 2 G 08 0 4 0 3 Y 09 4 3 0 0 M 10 5 0 2 0 A 11 0 2 2 3 B 12 1 1 3 0 G XX BA 7 compiled genomic binding sites from 2 genes and 5 artificial sequences XX BS GATTGCGCAATC; R00207; 5; 12;; p. BS GCTGACGTCAG; R01358; 2; 12; 1; p. BS CTGACGCAAT; R03906; 1; 12; 1, 12; p. BS CATGACGTCATG; R03916; 11; 12; 27, 28, 29, 30, 31, 32, 33; p. BS CGTGACTCAGCG; R03924; 5; 12;; p. BS CGTGACTCAGCG; R03924; 22; 12;; p. BS CCTGACGTCAGA; R11554; 8; 12;; p. XX CC TRANSFAC Sites of quality <= 2 XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00515 XX ID V$PPARG_02 XX DT 07.11.2001 (created); mas. DT 07.12.2001 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA PPARG XX DE PPAR-gamma (peroxisome proliferator-activated receptor gamma) XX BF T01354; PPAR-gamma; Species: clawed frog, Xenopus laevis. BF T02736; PPAR-gamma1; Species: human, Homo sapiens. BF T02529; PPAR-gamma1; Species: mouse, Mus musculus. BF T04794; PPAR-gamma1; Species: cattle, Bos taurus. BF T03731; PPAR-gamma2; Species: human, Homo sapiens. BF T04780; PPAR-gamma2; Species: cattle, Bos taurus. XX P0 A C G T 01 18 3 0 2 A 02 21 0 0 6 A 03 3 7 15 2 G 04 1 1 0 26 T 05 21 0 7 0 A 06 0 0 28 0 G 07 0 1 27 0 G 08 0 0 3 25 T 09 1 23 4 0 C 10 28 0 0 0 A 11 4 17 3 4 C 12 6 7 9 6 N 13 3 3 19 3 G 14 0 0 0 28 T 15 2 5 20 1 G 16 24 3 1 0 A 17 0 28 0 0 C 18 0 28 0 0 C 19 0 11 0 17 Y 20 25 1 0 2 A 21 4 15 6 2 C 22 7 0 1 19 T 23 2 0 0 22 T XX BA 28 binding sites selected from random oligonucleotides XX BS AACTAGGTCATGGTGACCCACTT; R11555; 1; 23;; p. BS ATTTGGGTCACTGTGACCTACT; R11556; 1; 23; 23; p. BS ACTGGGTCACGATGACCTAGTT; R11557; 1; 23; 1; p. BS AACTAGGTCATGGTGACCCATTT; R11558; 1; 23;; p. BS AACTAGGTCATCGTGACCCAGT; R11559; 1; 23; 23; p. BS CAGTAGGTCACGGTTACCTACTT; R11560; 1; 23;; p. BS AGTAGGGCACTGTGACCTACTT; R11561; 1; 23; 1; p. BS ATATAGGTCAGAGTGACCCAGTT; R11562; 1; 23;; p. BS AGTAGGGCACTGTGACCTACTT; R11563; 1; 23; 1; p. BS CAGCAGCTGAATCTACCCTT; R11564; 1; 23; 21, 22, 23; p. BS AAGTAGGGCACCATGACCCAAAT; R11565; 1; 23;; p. BS AAGTAGGTGAGTGTGACCCAATT; R11566; 1; 23;; p. BS AAGTGGGTGAACGTCACCTACTT; R11567; 1; 23;; p. BS TAGTAGGTCACGTTGACCTACAT; R11568; 1; 23;; p. BS TAGTAGGTCAGCGTGACCTCAAT; R11572; 1; 23;; p. BS TATAGGTCACGGTGACCCAGTA; R11573; 1; 23; 1; p. BS ATGTGGGTCACGGTCACCCAGAT; R11574; 1; 23;; p. BS AAGTAGGTCACAGTGCCCTACT; R11575; 1; 23; 23; p. BS AAATGGGTCACCATGACCTAGTT; R11576; 1; 23;; p. BS AACTAGGTCATGGTGCCCCACTT; R11577; 1; 23;; p. BS ATGTAGGTAACAGTGGCCTACTT; R11578; 1; 23;; p. BS AATTGGGTCACACTCACCTACTT; R11579; 1; 23;; p. BS AAGAAGGTGACGTTCACCCACTT; R11580; 1; 23;; p. BS CAGTAGGTCAAAGTCACCTACAT; R11581; 1; 23;; p. BS AACTGGGTCACTCTGACCTATAT; R11582; 1; 23;; p. BS AACTAGGTCACCGTGACCCTAGT; R11583; 1; 23;; p. BS ATGTAGGTCAACGTAACCTACTA; R11584; 1; 23;; p. BS TAGGTCACATTGACCTACAT; R11585; 1; 23; 1, 2, 3; p. XX CC 5 rounds of selection; inverted repeat of two hexameric half-sites (pos. 5-10 and 14-19) with a spacer of 3 bp; bound by PPAR-gamma/RXR-alpha heterodimer and PPAR-gamma homodimer; absolute frequencies stated XX RN [1]; RE0017041. RX PUBMED: 11139380. RA Okuno M., Arimoto E., Ikenobu Y., Nishihara T., Imagawa M. RT Dual DNA-binding specificity of peroxisome-proliferator-activated receptor gamma controlled by heterodimer formation with retinoid X receptor alpha RL Biochem. J. 353:193-198 (2001). XX // AC M00516 XX ID V$E2F_03 XX DT 08.11.2001 (created); oke. DT 08.11.2001 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA E2F XX BF T00221; E2F; Species: human, Homo sapiens. BF T04056; E2F; Species: mouse, Mus musculus. BF T04747; E2F; Species: rat, Rattus norvegicus. BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. BF T02952; E2F-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 2 3 2 22 T 02 1 1 2 25 T 03 0 1 2 26 T 04 1 13 15 0 S 05 0 3 26 0 G 06 0 29 0 0 C 07 0 0 29 0 G 08 0 22 7 0 C 09 1 8 17 3 G 10 15 9 3 2 M 11 13 1 7 8 N 12 13 4 9 3 R XX BA 29 genomic binding sites XX RN [1]; RE0016526. RX PUBMED: 11491305. RA Kel A., Kel-Margoulis O., Farnham P., Bartley S., Wingender E., Zhang M. RT Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors RL J. Mol. Biol. 309:99-120 (2001). XX // AC M00517 XX ID V$AP1_01 XX DT 08.11.2001 (created); oke. DT 08.11.2001 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00030; AP-1; Species: monkey, Cercopithecus aethiops. BF T00031; AP-1; Species: rat, Rattus norvegicus. BF T00032; AP-1; Species: mouse, Mus musculus. BF T01115; AP-1; Species: hamster. BF T01140; AP-1; Species: chick, Gallus gallus. BF T01156; AP-1; Species: gibbon ape, Hylobates lar. BF T00123; c-Fos; Species: human, Homo sapiens. BF T00122; c-Fos; Species: mouse, Mus musculus. BF T00124; c-Fos; Species: rat, Rattus norvegicus. BF T00125; c-Fos; Species: chick, Gallus gallus. BF T00134; c-Jun; Species: chick, Gallus gallus. BF T00131; c-Jun; Species: mouse, Mus musculus. BF T00132; c-Jun; Species: rat, Rattus norvegicus. BF T00133; c-Jun; Species: human, Homo sapiens. BF T00135; c-Jun; Species: hamster. BF T00291; FosB; Species: mouse, Mus musculus. BF T00292; Fra-1; Species: mouse, Mus musculus. BF T01208; Fra-1; Species: rat, Rattus norvegicus. BF T01462; Fra-1; Species: human, Homo sapiens. BF T01977; JunB; Species: human, Homo sapiens. BF T00436; JunB; Species: mouse, Mus musculus. BF T02196; JunD; Species: chick, Gallus gallus. BF T01978; JunD; Species: human, Homo sapiens. BF T00437; JunD; Species: mouse, Mus musculus. BF T02197; JunD; Species: rat, Rattus norvegicus. XX P0 A C G T 01 6 15 19 7 N 02 14 12 13 8 N 03 19 3 16 9 N 04 4 2 5 36 T 05 4 2 33 8 G 06 36 4 2 5 A 07 3 13 29 2 G 08 0 0 0 47 T 09 2 44 0 1 C 10 47 0 0 0 A 11 2 8 24 13 K 12 10 24 5 8 C 13 15 12 11 9 N XX BA 47 genomic binding sites XX RN [1]; RE0016525. RX PUBMED: 10329147. RA Kel A., Kel-Margoulis O., Babenko V., Wingender E. RT Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells RL J. Mol. Biol. 288:353-376 (1999). XX // AC M00518 XX ID V$PPARA_02 XX DT 08.11.2001 (created); mas. DT 07.12.2001 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA PPARalpha:RXR-alpha XX DE PPAR-alpha:RXR-alpha heterodimer (peroxisome proliferator activated factor alpha:retinoid X receptor alpha) XX BF T00694; PPAR-alpha; Species: mouse, Mus musculus. BF T00991; PPAR-alpha; Species: rat, Rattus norvegicus. BF T01352; PPAR-alpha; Species: clawed frog, Xenopus laevis. BF T02726; PPAR-alpha; Species: human, Homo sapiens. BF T01345; RXR-alpha; Species: human, Homo sapiens. BF T01331; RXR-alpha; Species: mouse, Mus musculus. BF T01359; RXR-alpha; Species: clawed frog, Xenopus laevis. BF T04383; RXR-alpha; Species: rat, Rattus norvegicus. XX P0 A C G T 01 3 6 2 8 N 02 5 6 4 4 N 03 6 2 9 2 R 04 0 0 19 0 G 05 0 0 19 0 G 06 0 1 1 17 T 07 1 13 2 3 C 08 16 1 2 0 A 09 0 0 0 1 T 10 3 0 2 5 W 11 2 2 12 3 G 12 4 1 14 0 G 13 0 0 19 0 G 14 0 0 19 0 G 15 0 0 2 17 T 16 0 10 7 2 S 17 12 0 4 3 A 18 5 3 7 3 N 19 1 1 12 4 G XX BA 19 binding sites selected from random oligonucleotides XX BS CTGGGTCA TAGGTGAGG; R11591; 1; 19; 9, 10; p. BS GTCGGTCA AGGGTGAGG; R11592; 1; 19; 9, 10; p. BS CAAGGTCA GGGGTCGGT; R11593; 1; 19; 9, 10; p. BS TGGGGTCA GGGGTCATG; R11594; 1; 19; 9, 10; p. BS ATAGGTTA GAGGTCAGG; R11595; 1; 19; 9, 10; p. BS CGGGGTCG GGGGTTACA; R11596; 1; 19; 9, 10; p. BS TAGGGTCA GGGGTGTAT; R11597; 1; 19; 9, 10; p. BS TACGGCCA CAGGTTACT; R11598; 1; 19; 9, 10; p. BS TGTGGTGA TCGGGCACG; R11604; 10; 19; 18, 19; p. BS GTAGGTCG GGGGGTCGAG; R11605; 1; 19; 9; p. BS AGGGGTCA TGGGGTCGAG; R11606; 1; 19; 9; p. BS ACAGGTCA TGGGGTGAGG; R11607; 1; 19; 9; p. BS TCGGGTCA TAGGGTGTAG; R11608; 1; 19; 9; p. BS TCGGGTAA AGGGGTCAGT; R11609; 1; 19; 9; p. BS CAAGGTGC TGGGGTGGTG; R11610; 1; 19; 9; p. BS CAGGGGCA GCAGGGCTAC; R11611; 1; 19; 9; p. BS TCGGGTTA AGGGGTGAGG; R11612; 10; 19; 18; p. BS CCTGGTCA ATGGGTCATG; R11613; 9; 19; 17; p. BS TCAGGTTATTGGGGTCA; R11619; 1; 19; 18, 19; p. XX CC 6 rounds of selection; direct repeat of two hexameric half-sites (pos. 3-8 and 12-17) with a variable spacer of 1, 2, or 3 bp; bound by PPAR-alpha/RXR-alpha heterodimer; absolute frequencies stated XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00526 XX ID V$GCNF_01 XX DT 16.11.2001 (created); mas. DT 18.06.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA GCNF XX DE GCNF (germ cell nuclear factor) XX BF T02772; GCNF; Species: mouse, Mus musculus. BF T04401; GCNF-1; Species: human, Homo sapiens. BF T04400; GCNF-2; Species: human, Homo sapiens. XX P0 A C G T 01 9 15 8 5 N 02 2 5 7 23 T 03 3 28 5 1 C 04 31 1 4 1 A 05 35 0 1 1 A 06 1 0 36 0 G 07 0 1 13 23 K 08 0 0 0 37 T 09 0 37 0 0 C 10 37 0 0 0 A 11 36 1 0 0 A 12 0 0 34 3 G 13 1 1 17 18 K 14 1 1 2 33 T 15 0 35 0 2 C 16 34 1 1 1 A 17 9 14 6 8 N 18 6 14 7 10 N XX BA 37 high affinity binding sites selected from random oligonucleotides XX CC 4 rounds of selection; direct repeat of two hexameric half-sites (pos. 5-10 and 14-19) with no spacer; absolute frequencies stated XX RN [1]; RE0016359. RX PUBMED: 9099702. RA Yan Z. H., Medvedev A., Hirose T., Gotoh H., Jetten A. M. RT Characterization of the response element and DNA binding properties of the nuclear orphan receptor germ cell nuclear factor/retinoid receptor-related testis-associated receptor RL J. Biol. Chem. 272:10565-10572 (1997). XX // AC M00528 XX ID V$PPARG_03 XX DT 28.11.2001 (created); mas. DT 22.01.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA PPAR XX DE PPAR (peroxisome proliferator-activated receptor gamma) XX BF T01354; PPAR-gamma; Species: clawed frog, Xenopus laevis. BF T02736; PPAR-gamma1; Species: human, Homo sapiens. BF T02529; PPAR-gamma1; Species: mouse, Mus musculus. BF T04794; PPAR-gamma1; Species: cattle, Bos taurus. BF T03731; PPAR-gamma2; Species: human, Homo sapiens. BF T04780; PPAR-gamma2; Species: cattle, Bos taurus. XX P0 A C G T 01 10 1 2 6 W 02 11 2 2 4 A 03 1 10 5 3 S 04 4 5 1 9 N 05 10 2 5 2 R 06 0 0 19 0 G 07 1 0 18 0 G 08 3 3 7 6 N 09 2 12 1 4 C 10 18 0 1 0 A 11 14 1 1 3 A 12 16 1 1 1 A 13 1 0 18 0 G 14 0 0 14 5 G 15 0 1 1 17 T 16 0 14 4 1 C 17 16 0 1 2 A XX BA 19 genomic PPREs (PPAR response elements), all sequences in reference [1] XX CC direct repeat of two hexameric half-sites (pos. 5-10 and 12-17) with a spacer of 1 bp; probably most sites often bound by PPAR/RXR heterodimer; absolute frequencies stated XX RN [1]; RE0017065. RX PUBMED: 9242684. RA IJpenberg A., Jeannin E., Wahli W., Desvergne B. RT Polarity and specific sequence requirements of peroxisome proliferator-activated receptor (PPAR)/retinoid X receptor heterodimer binding to DNA. A functional analysis of the malic enzyme gene PPAR response element RL J. Biol. Chem. 272:20108-20117 (1997). XX // AC M00531 XX ID V$NERF_Q2 XX DT 25.02.2002 (created); mas. DT 27.02.2002 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA NERF1a XX DE new ets-related factor 1a XX BF T05021; NERF-1a; Species: human, Homo sapiens. XX P0 A C G T 01 0 2 1 3 Y 02 2 0 3 1 R 03 1 2 2 1 N 04 0 6 0 0 C 05 6 0 0 0 A 06 0 0 6 0 G 07 0 0 6 0 G 08 6 0 0 0 A 09 6 0 0 0 A 10 0 0 6 0 G 11 0 2 1 3 Y 12 3 0 3 0 R 13 1 1 3 1 N 14 0 2 3 1 S 15 0 1 1 4 T 16 0 2 2 2 B 17 2 0 2 2 D 18 0 3 2 1 S XX BA 6 genomic binding sites XX BS GAACAGGAAGTGAGGCGG; R03475; 6; 18;; p. BS CACCAGGAAGTAGCTGGG; R12017; 6; 18;; p. BS CTCCAGGAAGTATTTTTC; R12020; 7; 18;; p. BS TGTCAGGAAGCGCGTGTC; R12086; 7; 18;; p. BS TGGCAGGAAGCAGGTCAT; R12089; 6; 18;; p. BS TGGCAGGAAGGGGCCTAC; R12091; 8; 18;; p. XX CC absolute frequencies stated XX RN [1]; RE0016964. RA TRANSFAC_Team. RT Binding matrices compiled for TRANSFAC RL TRANSFAC Reports 2:0002 (2001). XX // AC M00532 XX ID V$RP58_01 XX DT 27.02.2002 (created); mas. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA RP58 XX DE 58 KDA repressor protein XX BF T05040; RP58; Species: human, Homo sapiens. XX P0 A C G T 01 17 17 36 30 N 02 42 19 25 14 N 03 73 27 0 0 A 04 95 0 5 0 A 05 0 100 0 0 C 06 100 0 0 0 A 07 0 0 2 98 T 08 0 98 2 0 C 09 0 0 0 100 T 10 0 0 100 0 G 11 0 3 74 23 G 12 61 29 10 0 A XX BA 44 sequences in 22 independent clones selected from random oligonucleotides XX CC 6 rounds of selection; relative frequencies stated XX RN [1]; RE0017569. RX PUBMED: 9756912. RA Aoki K., Meng G., Suzuki K., Takashi T., Kameoka Y., Nakahara K., Ishida R., Kasai M. RT RP58 associates with condensed chromatin and mediates a sequence-specific transcriptional repression. RL J. Biol. Chem. 273:26698-26704 (1998). XX // AC M00538 XX ID V$HTF_01 XX DT 28.02.2002 (created); vma. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HTF XX BF T05026; HTF; Species: rat, Rattus norvegicus. XX P0 A C G T 01 9 6 5 1 N 02 6 2 6 10 N 03 9 4 2 10 W 04 12 4 2 8 W 05 14 0 2 10 W 06 13 1 5 7 W 07 7 5 5 10 N 08 4 2 16 5 G 09 13 11 2 1 M 10 2 27 0 1 C 11 26 0 4 0 A 12 0 30 0 0 C 13 0 0 30 0 G 14 0 0 0 25 T 15 3 18 0 4 C 16 20 1 1 3 A 17 0 4 5 10 T 18 2 9 1 6 Y 19 5 2 4 6 N 20 4 5 0 8 Y 21 7 1 1 8 W 22 4 5 4 3 N 23 5 1 3 5 N 24 2 3 5 3 N XX BA 30 selected sequences (of the 34 clones obtained only those with a central CGT were used [1]) XX BS CTCCGCGTCATCTTACTT; R12220; 1; 24; 1, 2, 3, 4, 5, 6; p. BS ACTTATGCATGCGTTATCTTTGT; R12221; 1; 24; 24; p. BS CGGTAGTAGAGCGTCA; R12222; 1; 24; 17, 18, 19, 20, 21, 22, 23, 24; p. BS ATGATTAGCCGCGTCA; R12223; 1; 24; 17, 18, 19, 20, 21, 22, 23, 24; p. BS CTTCTTTGCCACG; R12224; 1; 24; 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24; p. BS ATACAGATACACGTCA; R12225; 1; 24; 17, 18, 19, 20, 21, 22, 23, 24; p. BS CTACTAAAACACGTCATCACTGGC; R12226; 1; 24;; p. BS AGAGTGGGCCACGTCATC; R12227; 1; 24; 19, 20, 21, 22, 23, 24; p. BS ACAATGTGACACGTCACGGCAAAA; R12228; 1; 24;; p. BS CATAAAGACCACG; R12229; 1; 24; 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24; p. BS TGCTTAAGCCACGTCAGTTTA; R12230; 1; 24; 22, 23, 24; p. BS AACATCGCCACGTCATTGCTTGG; R12231; 1; 24; 1; p. BS GAAAAAGCACACGTCA; R12232; 1; 24; 17, 18, 19, 20, 21, 22, 23, 24; p. BS GTCTGTTGCCACG; R12233; 1; 24; 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24; p. BS CACGTTGCATACCTA; R12234; 1; 24; 1, 2, 3, 4, 5, 6, 7, 8, 9; p. BS GTGAGTTACACGTAATTTATCTG; R12235; 1; 24; 1; p. BS GTTATAGTACACGTTAGCAAACAT; R12236; 1; 24;; p. BS CAAAAGACACGTACTCATAAAG; R12237; 1; 24; 1, 2; p. BS ATATAACGCCACGTTTCACTGGCC; R12238; 1; 24;; p. BS AACTTATGCCACG; R12239; 1; 24; 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24; p. BS AACCGCCACGTCAGCGAACAC; R12240; 1; 24; 1, 2, 3; p. BS ATTAAATGACACGTCA; R12241; 1; 24; 17, 18, 19, 20, 21, 22, 23, 24; p. BS GAATTCAGCACGTCAGTCTATAG; R12242; 1; 24; 1; p. BS CACGTCATCACTTTT; R12243; 1; 24; 1, 2, 3, 4, 5, 6, 7, 8, 9; p. BS AATTAAAGACACGTATC; R12244; 1; 24; 18, 19, 20, 21, 22, 23, 24; p. BS CATTTATTTAACGTCATTTTTG; R12245; 1; 24; 23, 24; p. BS CACGTCTTCATTAGG; R12246; 1; 24; 1, 2, 3, 4, 5, 6, 7, 8, 9; p. BS GGTAGTTGACACGTCAGTGCTA; R12247; 1; 24; 23, 24; p. BS CTTAAATGACACGTCA; R12248; 1; 24; 17, 18, 19, 20, 21, 22, 23, 24; p. BS GTAAAAAGACACG; R12249; 1; 24; 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24; p. XX CC 5 rounds of random binding site selection with FLAG-tagged HTF expressed in RL34 cells from a pool of 70-mer oligonucleotides with 30 random bp (matrix was re-calculated from the sites in [1]) XX RN [1]; RE0017548. RX PUBMED: 10675042. RA Kokura K., Kishimoto T., Tamura T. RT Identity between rat htf and human xbp-1 genes: determination of gene structure, target sequence, and transcription promotion function for HTF. RL Gene 241:297-307 (2000). XX // AC M00539 XX ID V$ARNT_02 XX DT 01.03.2002 (created); vma. DT 03.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Arnt XX DE AhR nuclear translocator homodimers XX BF T01346; Arnt; Species: human, Homo sapiens. BF T01797; Arnt; Species: mouse, Mus musculus. BF T01798; Arnt; Species: rat, Rattus norvegicus. XX P0 A C G T 01 7 16 14 5 N 02 14 13 12 3 N 03 14 8 11 9 N 04 14 12 8 8 N 05 10 7 15 10 N 06 15 5 19 3 R 07 6 0 8 28 T 08 0 42 0 0 C 09 42 0 0 0 A 10 0 42 0 0 C 11 0 0 42 0 G 12 0 0 0 42 T 13 0 0 42 0 G 14 28 8 0 6 A 15 3 19 5 15 Y 16 10 15 7 10 N 17 8 8 12 14 N 18 9 11 8 14 N 19 3 12 13 14 N 20 5 14 16 7 N XX BA 21 selected binding sequences; the sequences were analyzed as half-sites (N7CAC) and are mirrored for this matrix XX CC from a pool of oligonucleotides with a fixed CACGTG core and flanking random heptamers, oligonucleotides that bind to baculovirus-expressed Arnt were selected by 4 rounds of selection and PCR amplification XX RN [1]; RE0017564. RX PUBMED: 10454619. RA Swanson H. I., Yang J. H. RT Specificity of DNA binding of the c-Myc/Max and ARNT/ARNT dimers at the CACGTG recognition site. RL Nucleic Acids Res. 27:3205-3212 (1999). XX // AC M00615 XX ID V$MYCMAX_03 XX DT 02.03.2002 (created); vma. DT 03.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA c-Myc:Max XX DE c-Myc:Max heterodimer XX BF T00140; c-Myc; Species: human, Homo sapiens. BF T00141; c-Myc; Species: chick, Gallus gallus. BF T00142; c-Myc; Species: rat, Rattus norvegicus. BF T00143; c-Myc; Species: mouse, Mus musculus. BF T03427; c-Myc; Species: chimpanzee, Pan troglodytes. BF T03428; c-Myc; Species: woodchuck, Marmota monax. BF T03430; c-Myc; Species: gibbon ape, Hylobates lar. BF T03432; c-Myc; Species: dog, Canis familiaris (Canis canis). BF T03433; c-Myc; Species: common marmoset, Callithrix jacchus. BF T03450; c-Myc; Species: zebra fish, Brachydanio rerio. BF T03454; c-Myc; Species: goldfish, Carassius auratus. BF T03455; c-Myc; Species: sheep, Ovis aries. BF T03462; c-Myc; Species: rainbow trout, Oncorhynchus mykiss. BF T03466; c-Myc; Species: wild cat, Felis silvestris. BF T03532; c-Myc; Species: domestic pig, Sus scrofa. BF T05056; Max; Species: human, Homo sapiens. BF T00523; Max; Species: mouse, Mus musculus. BF T03552; Max; Species: zebra fish, Brachydanio rerio. BF T03570; Max; Species: chick, Gallus gallus. BF T03595; Max; Species: rat, Rattus norvegicus. BF T03596; Max; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 10 13 7 8 N 02 13 8 12 5 N 03 13 10 8 7 N 04 9 6 15 8 N 05 8 7 9 14 N 06 14 6 14 4 N 07 11 11 5 11 N 08 0 38 0 0 C 09 38 0 0 0 A 10 0 38 0 0 C 11 0 0 38 0 G 12 0 0 0 38 T 13 0 0 38 0 G 14 11 5 11 11 N 15 4 14 6 14 N 16 14 9 7 8 N 17 8 15 6 9 N 18 7 8 10 13 N 19 5 12 8 13 N 20 8 7 13 10 N XX BA 19 selected binding sequences; the sequences were analyzed as half-sites (N7CAC) and are mirrored for this matrix XX CC from a pool of oligonucleotides with a fixed CACGTG core and flanking random heptamers, oligonucleotides that bind to c-Myc/Max heterodimers were selected by 5 rounds of selection and PCR amplification XX RN [1]; RE0017564. RX PUBMED: 10454619. RA Swanson H. I., Yang J. H. RT Specificity of DNA binding of the c-Myc/Max and ARNT/ARNT dimers at the CACGTG recognition site. RL Nucleic Acids Res. 27:3205-3212 (1999). XX // AC M00616 XX ID V$AFP1_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA AFP1 XX BF T00015; AFP1; Species: human, Homo sapiens. XX P0 A C G T 01 5 0 0 0 A 02 1 0 0 4 T 03 1 0 0 4 T 04 5 0 0 0 A 05 5 0 0 0 A 06 0 3 0 2 Y 07 1 0 0 4 T 08 3 0 2 0 R 09 0 4 1 0 C 10 5 0 0 0 A 11 0 4 0 1 C XX BA 5 compiled binding sequences XX BS ATTAACTAGAC; R00080; -3; 11;; n. BS ATTAACAGCAC; R00430; -6; 11;; n. BS ATAAATTACAC; R01625; 2; 11;; n. BS ATTAACTGCAT; R01913; -5; 11;; n. BS AATAATTACAC; R09386; 6; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00619 XX ID V$ALX4_01 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA Alx-4 XX BF T02967; Alx-4; Species: mouse, Mus musculus. BF T04012; Alx-4; Species: human, Homo sapiens. XX P0 A C G T 01 0 5 0 0 C 02 0 5 0 0 C 03 0 0 0 5 T 04 0 0 5 0 G 05 5 0 0 0 A 06 0 0 5 0 G 07 5 0 0 0 A 08 5 0 0 0 A 09 0 0 0 5 T 10 5 0 0 0 A 11 5 0 0 0 A 12 0 0 0 5 T 13 0 5 0 0 C XX BA 5 selected sequences XX BS CCTGAGAATAATC; R09589; 1; 13;; p. BS CCTGAGAATAATC; R09590; 1; 13;; p. BS CCTGAGAATAATC; R09591; 1; 13;; p. BS CCTGAGAATAATC; R09592; 1; 13;; p. BS CCTGAGAATAATC; R09593; 1; 13;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00621 XX ID V$CEBPDELTA_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA C/EBPdelta XX BF T00583; C/EBPdelta; Species: human, Homo sapiens. BF T01114; C/EBPdelta; Species: mouse, Mus musculus. BF T00109; C/EBPdelta; Species: rat, Rattus norvegicus. XX P0 A C G T 01 7 6 3 0 M 02 14 0 0 2 A 03 0 0 0 16 T 04 0 0 1 15 T 05 3 0 8 5 K 06 0 16 0 0 C 07 4 2 7 3 N 08 1 4 2 9 T 09 6 8 0 2 M 10 12 3 0 1 A 11 0 8 1 7 Y 12 2 6 0 8 Y XX BA 16 compiled binding sequences XX BS CATTACAAAATC; R00097; -1; 12;; n. BS GTTTGCGCCACT; R00239; 1; 12;; n. BS CATTTCGTAATT; R00629; 1; 12;; n. BS CATTGCACAATC; R03136; 7; 12;; p. BS GATTACATCACT; R03152; 8; 12;; n. BS ATTTTCTTTCCC; R03322; 12; 12;; n. BS AATTGCGTCATT; R04044; 1; 12;; p. BS CATTGCCCAACT; R04494; 5; 12;; n. BS AATGACATCACA; R04501; 12; 12;; p. BS AATTTCCTTTCC; R04507; 8; 12;; p. BS AATTGCTGCCTT; R04511; 7; 12;; p. BS AATTGCTGCCTT; R04512; -9; 12;; p. BS CATTTCGTAACT; R05074; 14; 12;; n. BS AATTGCGTAAGC; R08091; 7; 12;; n. BS CATTTCGTCACA; R08092; 8; 12;; p. BS GATTGCGCCATC; R08105; 4; 12;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00622 XX ID V$CEBPGAMMA_Q6 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA C/EBPgamma XX BF T00216; C/EBPgamma; Species: mouse, Mus musculus. BF T04884; C/EBPgamma; Species: human, Homo sapiens. BF T02028; C/EBPgamma; Species: rat, Rattus norvegicus. XX P0 A C G T 01 1 4 0 2 C 02 0 2 0 5 T 03 0 3 2 2 B 04 7 0 0 0 A 05 0 2 0 5 T 06 0 0 2 5 T 07 2 0 0 5 T 08 2 5 0 0 C 09 6 0 0 1 A 10 3 1 3 0 R 11 7 0 0 0 A 12 5 0 1 1 A 13 3 1 0 3 W XX BA 7 compiled binding sequences XX BS CCCATTACAAAAT; R00089; 5; 13;; n. BS CCGATTTCACAAA; R00600; 3; 13;; p. BS ATTATTACAAAAT; R00837; 4; 13;; n. BS CTTATGTAAGAAA; R00840; -10; 13;; p. BS TTCATTTAAAAAT; R00847; -7; 13;; n. BS TTCACTTCTGATC; R00880; 17; 13;; n. BS CTGACGTCAGAGA; R01358; 2; 13;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00623 XX ID V$CRX_Q4 XX DT 08.03.2002 (created); ela. DT 09.01.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA Crx XX BF T02792; Crx; Species: human, Homo sapiens. BF T03458; Crx; Species: rat, Rattus norvegicus. BF T03461; Crx; Species: mouse, Mus musculus. BF T03489; Crx; Species: cattle, Bos taurus. BF T05157; RX; Species: human, Homo sapiens. XX P0 A C G T 01 2 9 1 13 Y 02 3 9 5 9 N 03 11 6 4 5 N 04 4 11 3 8 N 05 0 0 0 26 T 06 24 0 1 1 A 07 26 0 0 0 A 08 2 3 4 17 T 09 2 17 3 4 C 10 4 12 0 10 Y 11 0 14 7 5 S 12 12 9 1 4 M 13 2 11 6 7 N XX BA 26 compiled binding sequences XX BS TCACTAATCTCCC; R09044; 3; 13;; p. BS TCAGTAATCTGAG; R09045; 3; 13;; p. BS CTACTAATCACAC; R09046; 3; 13;; p. BS CCCCTAATTACAC; R09047; 4; 13;; n. BS CGGCTAATCTGGC; R09048; 3; 13;; p. BS TTACTAATTAGCC; R09049; 4; 13;; n. BS ACTATAATCCCTG; R09050; 4; 13;; n. BS CTTGTAATTCTTC; R09051; 3; 13;; p. BS ATTCTAATCCCCC; R09052; 4; 13;; n. BS TCCATAAGACGAT; R09055; -3; 13;; p. BS CCTGTAATCCCAG; R09056; 4; 13;; n. BS TTATTAATCATAT; R09104; 11; 13;; n. BS CAATTAAGCCCCT; R09105; 6; 13;; p. BS TCCCTAAGCTCCC; R09106; 6; 13;; n. BS NGGCTAAACTCAG; R09107; -1; 13;; n. BS CCTTTAATCCTAT; R09108; 26; 13;; n. BS TTAATAACTTTCC; R09109; 3; 13;; p. BS TTATTAACGTGCA; R09110; 17; 13;; n. BS TGCTTAATGCTTA; R09111; -1; 13;; p. BS TCATTTAGCTGTT; R09112; 58; 13;; p. BS TGATTAAACTCAG; R09114; 3; 13;; n. BS CAGCTAATGCGAC; R09115; 5; 13;; n. BS TGCATAACACCAG; R09116; 15; 13;; p. BS CTGTTGATCCCCT; R09117; 3; 13;; n. BS GAACTAATCCCCT; R09118; 15; 13;; n. BS TTCCTAATCTCAC; R09119; 4; 13;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00624 XX ID V$DBP_Q6 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA DBP XX BF T00183; DBP; Species: rat, Rattus norvegicus. BF T04875; DBP; Species: human, Homo sapiens. XX P0 A C G T 01 15 0 0 0 A 02 0 0 13 2 G 03 0 15 0 0 C 04 11 0 0 4 A 05 7 4 0 4 H 06 9 2 0 4 A 07 4 8 0 3 C XX BA 15 compiled binding sequences XX BS ATCATAC; R00089; -1; 7;; n. BS AGCTACA; R00616; -9; 7;; n. BS ATCATAT; R01175; 15; 7;; n. BS AGCAATC; R02457; 25; 7;; n. BS AGCAATC; R02458; 4; 7;; n. BS AGCACAC; R02459; -2; 7;; p. BS AGCTTAA; R02987; -7; 7;; p. BS AGCAAAC; R03128; 13; 7;; p. BS AGCAAAC; R03243; 14; 7;; p. BS AGCAAAA; R03251; 14; 7;; p. BS AGCTACC; R04270; -10; 7;; n. BS AGCACAT; R08111; 10; 7;; n. BS AGCACAT; R08112; 20; 7;; p. BS AGCTCTC; R08113; 20; 7;; p. BS AGCATTA; R08114; 11; 7;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00626 XX ID V$EFC_Q6 XX DT 08.03.2002 (created); ela. DT 18.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA RFX1 (EF-C) XX BF T00229; RFX1; Species: rat, Rattus norvegicus. BF T00231; RFX1; Species: mouse, Mus musculus. BF T01666; RFX1; Species: mouse, Mus musculus. BF T00230; RFX1; Species: human, Homo sapiens. BF T00728; RFX1; Species: human, Homo sapiens. BF T00909; RFX1; Species: human, Homo sapiens. BF T01673; RFX1; Species: human, Homo sapiens. BF T05444; RFX5:RFXAP:RFXANK; Species: human, Homo sapiens. XX P0 A C G T 01 3 3 0 0 M 02 2 0 4 0 R 03 2 0 0 4 W 04 0 2 0 4 Y 05 4 0 2 0 R 06 1 5 0 0 C 07 0 2 1 3 Y 08 4 1 0 1 A 09 0 0 4 2 K 10 1 0 5 0 G 11 0 4 2 0 S 12 4 0 1 1 A 13 5 1 0 0 A 14 3 3 0 0 M XX BA 6 compiled binding sequences XX BS AAACACTTGGCACA; R00637; -4; 14;; n. BS CGTTACTATGGGAA; R00797; 8; 14;; p. BS AGTTGCTAGGCAAC; R01237; 1; 14;; p. BS CGTTGCCCGGCAAC; R02570; -1; 14;; p. BS AGATAAGAGACAAC; R03409; 1; 14;; n. BS CATCACCATGGTAA; R03424; 2; 14;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00629 XX ID I$EVE_Q6 XX DT 08.03.2002 (created); ela. DT 09.06.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA Eve XX BF T00271; Eve; Species: grasshopper, Schistocerca americana. BF T00272; Eve; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 1 0 2 6 T 02 1 4 2 2 N 03 5 0 0 4 W 04 0 3 5 1 S 05 0 5 4 0 S 06 1 3 1 4 Y 07 0 9 0 0 C 08 2 2 0 5 T 09 0 0 7 2 G 10 0 7 1 0 C XX BA 9 compiled binding sequences XX BS TTTCGTCAGC; R00411; 31; 10;; p. BS TGAGGCCTTC; R00412; 19; 10;; n. BS GTTTCCCTTC; R00413; -8; 10;; p. BS TCAGCACCGN; R00418; 1; 10;; p. BS TCAGGTCTGG; R01281; 26; 10;; p. BS GCAGCTCTGC; R01283; -10; 10;; n. BS AATCGTCTGC; R01284; -7; 10;; p. BS TGTGCCCCGC; R03029; 13; 10;; p. BS TCACCGCAGC; R03031; 9; 10;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00630 XX ID V$FOXM1_01 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA FOXM1 XX BF T02515; FOXM1; Species: mouse, Mus musculus. BF T04208; FOXM1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 5 0 0 0 A 02 2 0 3 0 R 03 3 1 0 1 A 04 1 0 0 4 T 05 1 0 2 2 K 06 0 1 4 0 G 07 4 0 0 1 A 08 0 2 2 1 S 09 0 0 0 5 T XX BA 5 selected sequences XX BS AGCTTGATT; R05100; 1; 9;; p. BS AGATTGAGT; R09799; 1; 9;; p. BS AATTGGTCT; R09800; 3; 9;; p. BS AAATGCAGT; R09801; 3; 9;; n. BS AGAAAGACT; R09802; 5; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00631 XX ID V$FXR_Q3 XX DT 08.03.2002 (created); ela. DT 01.09.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA FXR/RXR-alpha XX BF T04494; FXR; Species: rat, Rattus norvegicus. BF T02753; FXR-alpha; Species: mouse, Mus musculus. BF T04498; FXR-alpha; Species: human, Homo sapiens. BF T05313; FXR:RXR-alpha; Species: human, Homo sapiens. BF T05318; FXR:RXR-alpha; Species: rat, Rattus norvegicus. BF T05322; FXR:RXR-alpha; Species: mouse, Mus musculus. XX P0 A C G T 01 0 4 1 1 C 02 6 0 0 0 A 03 4 0 2 0 R 04 0 1 5 0 G 05 0 0 4 2 K 06 0 0 1 5 T 07 0 3 3 0 S 08 6 0 0 0 A 09 2 0 1 3 W 10 0 0 0 6 T 11 4 0 2 0 R 12 6 0 0 0 A 13 1 5 0 0 C 14 0 5 0 1 C XX BA 6 compiled binding sequences XX BS GAACTTGAGTGACC; R09968; 5; 14;; n. BS CAAGTGCATTGAAC; R09990; 2; 14;; n. BS CAGGGTGAATAACC; R09992; 2; 14;; p. BS CAGGGTCATTAACC; R10074; 5; 14;; n. BS TAAGGTGAATAACC; R10075; 2; 14;; p. BS CAAGGTCATTAACT; R10077; 5; 14;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00632 XX ID V$GATA4_Q3 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA GATA-4 XX BF T02532; GATA-4; Species: mouse, Mus musculus. BF T02682; GATA-4; Species: chick, Gallus gallus. BF T02687; GATA-4; Species: human, Homo sapiens. BF T02711; GATA-4; Species: clawed frog, Xenopus laevis. BF T02716; GATA-4; Species: rat, Rattus norvegicus. XX P0 A C G T 01 6 0 0 1 A 02 1 0 5 1 G 03 7 0 0 0 A 04 2 0 0 5 T 05 5 1 0 1 A 06 3 0 2 2 D 07 3 3 1 0 M 08 5 0 2 0 A 09 0 0 7 0 G 10 2 0 4 1 G 11 1 2 4 0 G 12 6 0 1 0 A XX BA 7 compiled binding sequences XX BS TGATAGCAGTGA; R08150; 8; 12;; n. BS AGATATGGGGAG; R08277; 16; 12;; p. BS ATAAATCAGAGA; R08287; 15; 12;; p. BS AGATAAAAGGCA; R08288; 9; 12;; p. BS AGATAGAGGAGA; R08289; -6; 12;; n. BS AGATTACAGGGA; R08290; 9; 12;; p. BS AAAACAAAGGCA; R08292; 21; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00633 XX ID F$GBF_Q6 XX DT 08.03.2002 (created); ela. DT 08.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GBF XX BF T00315; GBF; Species: slime mold, Dictyostelium discoideum. XX P0 A C G T 01 1 0 0 4 T 02 0 0 0 5 T 03 1 0 3 1 G 04 1 0 4 0 G 05 0 0 5 0 G 06 0 0 4 1 G 07 0 0 5 0 G 08 0 0 0 5 T 09 1 0 3 1 G XX BA 5 compiled binding sequences XX BS ATGGGGGTT; R00236; 7; 9;; p. BS TTGAGTGTG; R00276; 19; 9;; p. BS TTGGGGGTA; R00277; 1; 9;; p. BS TTAGGGGTG; R01288; 16; 9;; p. BS TTTGGGGTG; R01531; 3; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00634 XX ID V$GCM_Q2 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA GCM XX BF T02306; GCMa; Species: human, Homo sapiens. BF T02307; GCMa; Species: mouse, Mus musculus. BF T02308; GCMb; Species: mouse, Mus musculus. XX P0 A C G T 01 2 4 0 1 C 02 3 2 1 1 N 03 1 2 2 2 N 04 3 0 3 1 R 05 0 7 0 0 C 06 0 7 0 0 C 07 1 6 0 0 C 08 1 0 5 1 G 09 0 7 0 0 C 10 7 0 0 0 A 11 0 0 1 6 T 12 2 0 2 3 D XX BA 7 compiled binding sequences XX BS AAATCCCGCATA; R04612; 3; 12;; n. BS CATACCCGCAGT; R04614; 1; 12;; p. BS CAGACCCACATA; R04615; 1; 12;; p. BS TTTGCCCGCATT; R04616; 1; 12;; p. BS CCGGCCCGCATT; R04617; 3; 12;; n. BS ACCACCCTCATG; R04619; 1; 12;; p. BS CGCGCCAGCATG; R04620; 1; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00635 XX ID P$GT1_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA GT-1 XX BF T00339; GT-1; Species: pea, Pisum sativum. BF T01089; GT-1; Species: tobacco, Nicotiana tabacum. BF T04310; GT-1; Species: Catharanthus roseus, Madagascar periwinkle. BF T04454; GT-1; Species: thale cress, Arabidopsis thaliana. BF T04286; GT-1b; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 0 1 14 0 G 02 0 0 0 15 T 03 6 1 6 2 R 04 9 0 3 3 A 05 11 0 0 4 A 06 6 0 0 9 W 07 14 0 1 0 A XX BA 15 compiled binding sequences XX BS GTGTAAA; R01316; 3; 7;; n. BS GTGGATA; R01317; 10; 7;; n. BS GTGGTTA; R01318; -7; 7;; p. BS GTGAAAA; R01319; 5; 7;; n. BS GTTAAAA; R03077; 8; 7;; p. BS GTGATTA; R03078; 10; 7;; p. BS GTGAATG; R03079; 28; 7;; p. BS CTAAATA; R09823; 9; 7;; n. BS GTAAAAA; R09824; 6; 7;; p. BS GTAAAAA; R09825; 6; 7;; p. BS GTAATTA; R09845; 1; 7;; p. BS GTATTTA; R09846; 11; 7;; n. BS GTTTATA; R09847; -7; 7;; n. BS GTCGAAA; R11447; 13; 7;; p. BS GTAAATA; R11449; -1; 7;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00638 XX ID V$HNF4ALPHA_Q6 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF-4alpha XX BF T00012; HNF-4; Species: human, Homo sapiens. BF T02758; HNF-4; Species: human, Homo sapiens. BF T05017; HNF-4; Species: rat, Rattus norvegicus. BF T05294; HNF-4; Species: chipmunk, Tamias asiaticus (sibiricus). BF T03828; HNF-4alpha; Species: human, Homo sapiens. BF T01181; HNF-4alpha; Species: mouse, Mus musculus. BF T05287; HNF-4alpha; Species: mouse, Mus musculus. BF T00013; HNF-4alpha; Species: rat, Rattus norvegicus. BF T01182; HNF-4alpha; Species: rat, Rattus norvegicus. BF T05288; HNF-4alpha; Species: rat, Rattus norvegicus. BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. BF T02421; HNF-4alpha1; Species: human, Homo sapiens. BF T02424; HNF-4alpha1; Species: mouse, Mus musculus. BF T02429; HNF-4alpha1; Species: clawed frog, Xenopus laevis. BF T02422; HNF-4alpha2; Species: rat, Rattus norvegicus. BF T02423; HNF-4alpha2; Species: mouse, Mus musculus. XX P0 A C G T 01 4 4 3 0 V 02 2 1 0 8 T 03 1 0 10 0 G 04 10 0 1 0 A 05 6 3 1 1 A 06 0 11 0 0 C 07 0 3 0 8 T 08 0 0 0 11 T 09 1 1 0 9 T 10 1 0 8 2 G 11 5 4 1 1 M 12 5 6 0 0 M 13 0 5 3 3 B XX BA 11 compiled binding sequences XX BS GTGGACTTAGCCC; R00114; 16; 13;; p. BS ATGAACTTTAAAC; R01183; 6; 13;; p. BS CTGAACTTCTAAG; R01186; 12; 13;; p. BS GCAATCTTTGACC; R01457; 10; 13;; n. BS GTGACCTTTGCCC; R02657; 4; 13;; p. BS ATGAACCTTGCCT; R03034; -1; 13;; n. BS ATGACCCTTGCAG; R03035; -1; 13;; n. BS CTGAACTTTGGAC; R03881; 8; 13;; n. BS CAGAGCTTTGTCT; R04454; 20; 13;; n. BS CAGAACCTTTAAG; R04478; -4; 13;; n. BS ATGACCTTTGACT; R04770; -1; 13;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00639 XX ID V$HNF6_Q6 XX DT 08.03.2002 (created); ela. DT 09.01.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA HNF-6 XX BF T03296; HNF-6; Species: mouse, Mus musculus. BF T03257; HNF-6alpha; Species: rat, Rattus norvegicus. BF T03286; HNF-6alpha; Species: human, Homo sapiens. BF T03258; HNF-6beta; Species: rat, Rattus norvegicus. BF T03259; OC-2; Species: human, Homo sapiens. XX P0 A C G T 01 5 4 0 4 H 02 6 1 2 4 W 03 10 0 1 2 A 04 13 0 0 0 A 05 9 0 4 0 A 06 0 0 0 13 T 07 0 13 0 0 C 08 12 1 0 0 A 09 13 0 0 0 A 10 0 0 0 13 T 11 8 2 2 1 A 12 6 1 2 4 W XX BA 13 compiled binding sequences XX BS CTAAGTCAATAA; R01464; 1; 12;; p. BS TGAAATCAATTT; R02988; 5; 12;; p. BS AGAAGTCAATGA; R08910; 6; 12;; p. BS AAAAATCAATAT; R08911; 14; 12;; n. BS TTTAGTCAATCA; R08912; 6; 12;; p. BS AAAAATCCATAA; R08914; 18; 12;; p. BS AAAAATCAATAT; R08915; 6; 12;; n. BS CAAAGTCAATAA; R08916; 1; 12;; p. BS ATAAATCAATAG; R08917; 2; 12;; n. BS CTAAATCAATGG; R08921; 2; 12;; n. BS TAAAATCAATCC; R08922; 9; 12;; p. BS TCTAATCAATAA; R08923; 2; 12;; n. BS CAGAATCAATAT; R08924; 2; 12;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00640 XX ID V$HOXA4_Q2 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA HOXA4 XX BF T01701; HOXA4; Species: mouse, Mus musculus. BF T01703; HOXA4; Species: human, Homo sapiens. BF T03784; HOXA4; Species: Japanese pufferfish, Fugu rubripes. BF T04475; HOXA4; Species: Horn shark, Heterodontus francisci. BF T00128; HOXA4; Species: chick, Gallus gallus. XX P0 A C G T 01 4 0 2 0 A 02 2 1 0 3 W 03 5 0 0 1 A 04 6 0 0 0 A 05 1 1 0 4 T 06 0 0 1 5 T 07 3 0 3 0 R 08 0 0 6 0 G XX BA 6 compiled binding sequences XX BS GTAATTGG; R00217; 4; 8;; n. BS GCAATTGG; R00218; 4; 8;; p. BS ATAACGAG; R00219; 3; 8;; n. BS AAAATTAG; R00220; 10; 8;; n. BS AAAATTAG; R00221; 4; 8;; p. BS ATTAATGG; R00222; 2; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00641 XX ID V$HSF_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA HSF XX BF T00383; HSF; Species: human, Homo sapiens. BF T01041; HSF; Species: clawed frog, Xenopus laevis. BF T00384; HSF1; Species: mouse, Mus musculus. XX P0 A C G T 01 0 0 0 5 T 02 0 0 0 5 T 03 0 5 0 0 C 04 0 3 1 1 C 05 3 2 0 0 M 06 0 0 5 0 G 07 3 1 1 0 A 08 2 0 3 0 R 09 0 0 5 0 G 10 0 2 0 3 Y 11 0 0 0 5 T 12 0 0 0 5 T 13 0 5 0 0 C XX BA 5 compiled binding sequences XX BS TTCGCGAAGTTTC; R00756; 11; 13;; p. BS TTCCAGGGGTTTC; R00762; 1; 13;; n. BS TTCTAGAGGCTTC; R00773; 1; 13;; n. BS TTCCAGCAGTTTC; R03464; 3; 13;; n. BS TTCCCGAGGCTTC; R03623; 7; 13;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00644 XX ID V$LBP1_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA LBP-1 XX BF T00461; LBP-1; Species: human, Homo sapiens. BF T00462; LBP-1; Species: chick, Gallus gallus. XX P0 A C G T 01 0 5 0 0 C 02 3 1 1 0 A 03 0 0 5 0 G 04 0 5 0 0 C 05 0 0 0 5 T 06 0 0 4 1 G 07 0 3 2 0 S XX BA 5 compiled binding sequences XX BS CAGCTGC; R01620; 7; 7;; p. BS CGGCTTG; R01621; 1; 7;; p. BS CCGCTGG; R01622; 6; 7;; n. BS CAGCTGC; R03168; 16; 7;; n. BS CAGCTGC; R03169; -6; 7;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00646 XX ID V$LFA1_Q6 XX DT 08.03.2002 (created); ela. DT 09.06.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA LF-A1 XX BF T00466; LF-A1; Species: chick, Gallus gallus. BF T00467; LF-A1; Species: human, Homo sapiens. BF T00468; LF-A1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 0 6 0 G 02 0 0 6 0 G 03 1 0 5 0 G 04 1 2 3 0 S 05 1 0 0 5 T 06 0 5 0 0 C 07 3 0 0 2 W 08 2 0 3 0 R XX BA 6 compiled binding sequences XX BS GGGGTCAG; R00114; -11; 8;; n. BS GGACTCTG; R00135; 35; 8;; n. BS GGGATCTG; R00155; -45; 8;; n. BS GGGGTCAA; R00157; 7; 8;; n. BS GGGCANNN; R01171; 1; 8;; p. BS GGGGTCAA; R03662; 49; 8;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00647 XX ID V$LXR_Q3 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA LXR XX BF T02752; LXR-alpha; Species: human, Homo sapiens. BF T04430; LXR-alpha; Species: mouse, Mus musculus. BF T04434; LXR-alpha; Species: rat, Rattus norvegicus. BF T05320; LXR-alpha:RXR-alpha; Species: mouse, Mus musculus. BF T05324; LXR-alpha:RXR-alpha; Species: human, Homo sapiens. BF T04451; LXR-beta; Species: rat, Rattus norvegicus. BF T04453; LXR-beta; Species: human, Homo sapiens. BF T04467; LXR-beta; Species: mouse, Mus musculus. BF T05325; LXR-beta:RXR-alpha; Species: human, Homo sapiens. XX P0 A C G T 01 1 2 0 5 T 02 2 0 5 1 G 03 0 1 6 1 G 04 0 0 8 0 G 05 0 0 8 0 G 06 0 0 0 8 T 07 0 4 0 4 Y 08 7 1 0 0 A 09 0 6 1 1 C 10 0 2 1 5 T 11 2 2 3 1 N 12 1 2 4 1 N 13 2 4 2 0 C 14 0 0 8 0 G 15 0 0 6 2 G 16 0 0 2 6 T 17 0 8 0 0 C 18 7 0 1 0 A XX BA 8 compiled binding sequences XX BS TAGGGTCAGGCCAGGTCA; R09936; -2; 18;; p. BS TGCGGTTCCCAGGGTTCA; R09957; 3; 18;; p. BS TTTGGTCACTCAAGTTCA; R09968; 2; 18;; p. BS CGGGGTTACTAGCGGGCG; R09972; 18; 18;; n. BS TGGGGTTACTGGCGGTCA; R09974; 5; 18;; n. BS TGGGGTCATTGTCGGGCA; R09975; 3; 18;; p. BS CAGGGTCACTGGCGGTCA; R09980; 3; 18;; p. BS AGGGGTTACCTCGGGTCA; R10034; 8; 18;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00648 XX ID V$MAF_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA MAF XX BF T01463; MAF; Species: mouse, Mus musculus. XX P0 A C G T 01 1 0 0 4 T 02 2 0 2 1 R 03 1 0 4 0 G 04 3 0 2 0 R 05 2 0 3 0 R 06 0 0 5 0 G 07 0 0 5 0 G 08 5 0 0 0 A 09 5 0 0 0 A 10 0 0 5 0 G 11 0 0 0 5 T 12 0 0 2 3 K 13 0 0 3 2 K 14 0 2 2 1 S 15 0 3 2 0 S 16 1 0 1 3 T XX BA 5 compiled binding sequences XX BS AAGAAGGAAGTGTTGT; R01595; 7; 16;; p. BS TAAGAGGAAGTTGGCT; R03111; 9; 16;; n. BS TTGGGGGAAGTTGCGG; R04188; -3; 16;; p. BS TGGAGGGAAGTTGGCA; R04192; 2; 16;; p. BS TGGAGGGAAGTGTCCT; R04193; 2; 16;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00649 XX ID V$MAZ_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA MAZ XX BF T00490; MAZ; Species: human, Homo sapiens. BF T02303; MAZ; Species: mouse, Mus musculus. BF T05035; MAZ; Species: mouse, Mus musculus. BF T02304; MAZ; Species: golden (Syrian) hamster, Mesocricetus auratus. XX P0 A C G T 01 3 0 8 1 G 02 0 0 12 0 G 03 0 0 11 1 G 04 0 1 11 0 G 05 10 2 0 0 A 06 0 0 12 0 G 07 2 1 9 0 G 08 0 0 12 0 G XX BA 12 compiled binding sequences XX BS GGGGCGGG; R00315; 7; 8;; p. BS GGGGAGGG; R02306; -1; 8;; p. BS GGGGAGGG; R04621; 19; 8;; n. BS GGGGAGGG; R04622; 6; 8;; p. BS GGGCAGAG; R04623; 3; 8;; p. BS GGGGAGGG; R04625; 6; 8;; n. BS GGGGCGAG; R04626; -9; 8;; p. BS AGGGAGCG; R04627; 17; 8;; p. BS GGGGAGGG; R04628; 21; 8;; p. BS TGTGAGGG; R04630; 16; 8;; p. BS AGGGAGGG; R04976; 12; 8;; p. BS AGGGAGGG; R08503; 2; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00650 XX ID V$MTF1_Q4 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA MTF-1 XX BF T02354; MTF-1; Species: human, Homo sapiens. BF T00515; MTF-1; Species: mouse, Mus musculus. XX P0 A C G T 01 1 1 2 8 T 02 0 4 4 4 B 03 0 0 0 12 T 04 0 0 12 0 G 05 0 12 0 0 C 06 9 0 3 0 A 07 0 12 0 0 C 08 5 4 0 3 H 09 0 12 0 0 C 10 2 1 8 1 G 11 0 1 10 1 G 12 1 9 2 0 C 13 2 8 1 1 C 14 0 8 3 1 C XX BA 12 compiled binding sequences XX BS TCTGCACTCCGCCC; R01022; -1; 14;; p. BS TTTGCACACGGCAC; R01816; 2; 14;; p. BS TTTGCGCCCGGACT; R02016; 2; 14;; p. BS TGTGCACACTGGCG; R03449; 2; 14;; p. BS AGTGCGCTCGGCTC; R03450; 2; 14;; p. BS TTTGCACTCGTCCC; R08293; 6; 14;; p. BS CCTGCACACGCCCC; R08294; 8; 14;; n. BS TCTGCACACGGGCC; R08295; 8; 14;; n. BS TGTGCACACGGCGG; R08296; 6; 14;; p. BS TTTGCACCCAGCAG; R08297; 1; 14;; n. BS GGTGCGCCCGGCCC; R08298; 6; 14;; p. BS GCTGCACCCAGCCC; R08299; 6; 14;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00651 XX ID V$NFMUE1_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA NF-muE1 XX BF T00561; NF-muE1; Species: human, Homo sapiens. XX P0 A C G T 01 0 6 1 0 C 02 0 2 5 0 G 03 0 0 7 0 G 04 0 7 0 0 C 05 0 7 0 0 C 06 7 0 0 0 A 07 0 0 0 7 T 08 0 6 0 1 C 09 0 0 1 6 T XX BA 7 compiled binding sequences XX BS CGGCCATCT; R00848; 6; 9;; n. BS CGGCCATCT; R03416; 3; 9;; n. BS CGGCCATCT; R03418; 4; 9;; n. BS GCGCCATCT; R03419; 12; 9;; n. BS CGGCCATCT; R03420; 12; 9;; n. BS CCGCCATCT; R03421; 5; 9;; p. BS CGGCCATTG; R03422; -3; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00652 XX ID V$NRF1_Q6 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Nrf-1 XX BF T00673; NRF-1; Species: human, Homo sapiens. BF T01197; NRF-1; Species: monkey, Cercopithecus aethiops. XX P0 A C G T 01 0 7 0 0 C 02 1 0 6 0 G 03 0 7 0 0 C 04 4 0 2 1 A 05 0 0 0 7 T 06 0 0 7 0 G 07 0 7 0 0 C 08 0 0 7 0 G 09 0 7 0 0 C 10 4 0 3 0 R XX BA 7 compiled binding sequences XX BS CACATGCGCA; R01485; 4; 10;; p. BS CGCATGCGCG; R02659; 3; 10;; p. BS CGCATGCGCA; R02669; 5; 10;; n. BS CGCTTGCGCA; R02670; 7; 10;; n. BS CGCGTGCGCA; R02671; 1; 10;; n. BS CGCGTGCGCG; R09525; 4; 10;; n. BS CGCATGCGCG; R09526; 8; 10;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00653 XX ID P$OCSBF1_01 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA OCSBF-1 XX BF T02999; OCSBF-1; Species: maize, Zea mays. XX P0 A C G T 01 0 5 2 0 C 02 7 0 0 0 A 03 0 7 0 0 C 04 0 0 7 0 G 05 0 0 0 7 T XX BA 7 selected sequences XX BS CACGT; R08680; 3; 5;; p. BS CACGT; R08682; 3; 5;; p. BS CACGT; R08683; 3; 5;; p. BS CACGT; R08684; 3; 5;; p. BS GACGT; R08693; 3; 5;; p. BS GACGT; R08694; 3; 5;; p. BS CACGT; R08696; 3; 5;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00654 XX ID P$OSBZ8_Q6 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA OSBZ8 XX BF T02807; OSBZ8; Species: rice, Oryza sativa. XX P0 A C G T 01 5 1 0 0 A 02 0 6 0 0 C 03 1 0 5 0 G 04 0 2 0 4 T 05 0 1 5 0 G 06 0 0 2 4 T 07 0 6 0 0 C 08 2 0 4 0 G 09 1 4 0 1 C 10 0 3 2 1 S 11 4 2 0 0 A 12 1 1 2 2 N 13 2 1 0 3 W 14 0 4 2 0 C XX BA 6 compiled binding sequences XX BS CCACGTCACCAATC; R00679; 6; 14;; p. BS ACGTGGCATTATTC; R01315; 6; 14;; p. BS ACGTGGCGCGACAG; R03678; 5; 14;; p. BS ACGTGTCGCGCTCC; R08448; 12; 14;; p. BS ACGTGTCGACAGTG; R08449; 10; 14;; p. BS ACGCCTCGCCCGAC; R08450; -10; 14;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00655 XX ID V$PEA3_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA PEA3 XX BF T00686; PEA3; Species: rat, Rattus norvegicus. BF T02832; PEA3; Species: domestic pig, Sus scrofa. BF T00685; PEA3; Species: human, Homo sapiens. BF T00684; PEA3; Species: mouse, Mus musculus. XX P0 A C G T 01 7 0 1 1 A 02 0 9 0 1 C 03 5 0 0 5 W 04 0 0 0 10 T 05 0 10 0 0 C 06 0 10 0 0 C 07 0 0 4 6 K XX BA 10 compiled binding sequences XX BS ACTTCCT; R01224; 3; 7;; n. BS ACATCCT; R01639; 2; 7;; n. BS ACATCCT; R01640; 2; 7;; n. BS ACTTCCG; R01993; 1; 7;; n. BS ACATCCG; R01995; 1; 7;; n. BS ACATCCG; R01996; 4; 7;; n. BS ACTTCCT; R01999; 3; 7;; n. BS TTTCCT; R02095; 1; 7;; n. BS TCATCCT; R03058; 27; 7;; n. BS GCTTCCG; R04985; 7; 7;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00657 XX ID V$PTF1BETA_Q6 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA PTF1-beta XX BF T00701; PTF1-beta; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 0 7 0 G 02 3 0 4 0 R 03 1 0 6 0 G 04 5 0 2 0 A 05 7 0 0 0 A 06 7 0 0 0 A 07 4 3 0 0 M 08 0 3 2 2 B 09 0 3 2 2 B 10 3 0 1 3 W 11 0 7 0 0 C 12 5 2 0 0 A 13 1 0 5 0 G 14 0 3 3 0 S XX BA 7 compiled binding sequences XX BS GAAGAACCTTCAGC; R00106; 17; 14;; p. BS GGGGAACTGTCCNN; R00205; 27; 14;; p. BS GGGAAAAGGACAGG; R00223; 8; 14;; n. BS GGGAAAAGCACAGG; R00400; 8; 14;; n. BS GGGAAAATCTCCAC; R00409; 7; 14;; p. BS GAGAAACCTGCAGC; R01470; 13; 14;; p. BS GAGAAAACCACAGG; R01472; 13; 14;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00658 XX ID V$PU1_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA PU.1 XX BF T02068; PU.1; Species: human, Homo sapiens. BF T00702; PU.1; Species: mouse, Mus musculus. XX P0 A C G T 01 8 0 1 5 W 02 0 3 11 0 G 03 9 2 3 0 A 04 2 0 12 0 G 05 0 0 14 0 G 06 14 0 0 0 A 07 14 0 0 0 A 08 1 3 10 0 G XX BA 14 compiled binding sequences XX BS TGAGGAAC; R01068; 15; 8;; n. BS AGCGGAAG; R01155; 7; 8;; n. BS ACAGGAAG; R01711; 6; 8;; n. BS ACCGGAAG; R02386; 5; 8;; p. BS TGGGGAAG; R02685; 9; 8;; p. BS TGAGGAAC; R02982; 4; 8;; p. BS ACAGGAAG; R03475; 8; 8;; p. BS AGAGGAAC; R03675; -1; 8;; n. BS AGAGGAAG; R04413; -1; 8;; n. BS AGGAGAAG; R04722; 9; 8;; n. BS TGAGGAAA; R08101; 12; 8;; n. BS GGAGGAAG; R08122; 3; 8;; p. BS AGGAGAAG; R08195; 10; 8;; n. BS TGAGGAAG; R08196; 4; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00660 XX ID P$RITA1_01 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA RITA-1 XX BF T02786; RITA-1; Species: rice, Oryza sativa. BF T04706; RITA-1; Species: rice, Oryza sativa. XX P0 A C G T 01 3 7 0 8 Y 02 0 10 6 2 S 03 18 0 0 0 A 04 0 18 0 0 C 05 0 0 18 0 G 06 0 0 0 18 T 07 6 3 9 0 R XX BA 18 selected sequences XX BS CCACGTG; R08310; 3; 7;; n. BS ACACGTG; R08311; 2; 7;; p. BS ACACGTG; R08312; 2; 7;; p. BS ACACGTG; R08313; 3; 7;; n. BS CCACGTG; R08314; 3; 7;; n. BS TCACGTG; R08315; 2; 7;; p. BS CCACGTG; R08316; 2; 7;; p. BS CCACGTG; R08317; 3; 7;; n. BS TGACGTC; R08318; 2; 7;; p. BS TGACGTC; R08319; 3; 7;; n. BS TGACGTC; R08320; 3; 7;; n. BS TTACGTA; R08321; 3; 7;; n. BS CTACGTA; R08322; 2; 7;; p. BS TGACGTG; R08323; 3; 7;; n. BS TGACGTA; R08324; 3; 7;; n. BS CCACGTA; R08325; 2; 7;; p. BS CCACGTA; R08326; 3; 7;; n. BS TGACGTA; R08327; 2; 7;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00662 XX ID I$SGF3_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA SGF-3 XX BF T00746; SGF-3; Species: silk moth, Bombyx mori. XX P0 A C G T 01 0 0 2 5 T 02 0 0 0 7 T 03 4 0 3 0 R 04 0 0 1 6 T 05 1 0 3 3 K 06 0 7 0 0 C 07 7 0 0 0 A XX BA 7 compiled binding sequences XX BS TTGTTCA; R00449; 39; 7;; p. BS TTGTTCA; R00450; -9; 7;; p. BS TTGTACA; R00451; 35; 7;; n. BS TTATTCA; R02645; 4; 7;; n. BS GTATGCA; R02779; 1; 7;; p. BS GTAGGCA; R05010; -7; 7;; p. BS TTATGCA; R05011; 14; 7;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00664 XX ID F$STE12_Q4 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA STE12 XX BF T00772; STE12; Species: yeast, Saccharomyces cerevisiae. BF T01289; STE12; Species: yeast, Kluyveromyces lactis. XX P0 A C G T 01 3 1 0 1 A 02 0 0 0 5 T 03 0 0 5 0 G 04 5 0 0 0 A 05 5 0 0 0 A 06 5 0 0 0 A 07 0 5 0 0 C XX BA 5 compiled binding sequences XX BS CTGAAAC; R01479; 8; 7;; n. BS ATGAAAC; R01838; 1; 7;; p. BS ATGAAAC; R01842; 1; 7;; p. BS ATGAAAC; R01843; 1; 7;; p. BS TTGAAAC; R01844; 10; 7;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00665 XX ID V$SP3_Q3 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Sp3 XX BF T02419; Sp3; Species: chick, Gallus gallus. BF T02453; Sp3; Species: rat, Rattus norvegicus. BF T02338; Sp3; Species: human, Homo sapiens. XX P0 A C G T 01 6 0 0 0 A 02 0 2 3 1 S 03 2 3 0 1 M 04 2 4 0 0 C 05 0 1 1 4 T 06 1 0 1 4 T 07 0 2 4 0 G 08 0 0 4 2 G 09 0 0 6 0 G 10 1 2 3 0 S 11 3 1 2 0 R 12 1 0 5 0 G 13 0 1 5 0 G 14 0 0 6 0 G XX BA 6 compiled binding sequences XX BS AGTCTTGTGCAGGG; R03367; 17; 14;; n. BS AGAAGAGGGCAGGG; R03373; 6; 14;; n. BS ACCCTGGGGGCGGG; R04930; -4; 14;; p. BS ATCCCTGGGAGGGG; R05000; 5; 14;; n. BS AGAATTCGGGGGCG; R05013; -4; 14;; p. BS ACCCTTCTGGAAGG; R11589; 16; 14;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00666 XX ID I$SRYBETA_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA Sry-beta XX BF T00769; Sry-beta; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0 5 0 0 C 02 0 0 4 1 G 03 0 5 0 0 C 04 5 0 0 0 A 05 0 0 1 4 T 06 0 5 0 0 C 07 2 0 0 3 W 08 0 5 0 0 C 09 0 0 0 5 T XX BA 5 compiled binding sequences XX BS CGCATCTCT; R03390; 3; 9;; n. BS CGCAGCACT; R03391; 3; 9;; n. BS CGCATCTCT; R03392; 3; 9;; n. BS CGCATCTCT; R03393; 3; 9;; n. BS CTCATCACT; R03399; 3; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00671 XX ID V$TCF4_Q5 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TCF-4 XX BF T02915; TCF-4; Species: mouse, Mus musculus. BF T02918; TCF-4; Species: human, Homo sapiens. BF T03404; TCF-4; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 1 3 2 0 S 02 0 6 0 0 C 03 0 1 0 5 T 04 0 0 0 6 T 05 0 0 0 6 T 06 0 0 5 1 G 07 6 0 0 0 A 08 3 0 1 2 W XX BA 6 compiled binding sequences XX BS GCTTTGAT; R08584; 1; 8;; p. BS CCTTTGAT; R08585; 1; 8;; p. BS CCCTTTAG; R08639; 6; 8;; p. BS CCTTTGAA; R08640; 7; 8;; p. BS ACTTTGAA; R08641; 8; 8;; n. BS GCTTTGAA; R08647; 1; 8;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00672 XX ID V$TEF_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA TEF XX BF T01072; TEF; Species: rat, Rattus norvegicus. BF T04876; TEF; Species: human, Homo sapiens. XX P0 A C G T 01 4 0 0 1 A 02 0 0 0 5 T 03 1 0 4 0 G 04 0 1 1 3 T 05 1 0 0 4 T 06 2 1 0 2 W 07 4 0 0 1 A 08 1 2 0 2 Y 09 4 0 1 0 A 10 0 1 0 4 T 11 5 0 0 0 A 12 5 0 0 0 A XX BA 5 compiled binding sequences XX BS ATGGTCACGCAA; R00616; 5; 12;; n. BS ATGCTATAATAA; R03919; 8; 12;; p. BS TTGTTTATATAA; R03920; 13; 12;; n. BS ATGTTAACATAA; R03921; 2; 12;; p. BS ATATATATATAA; R03922; 7; 12;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00678 XX ID V$TEL2_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA Tel-2 XX BF T04998; Tel-2a; Species: human, Homo sapiens. BF T04886; Tel-2b; Species: human, Homo sapiens. BF T04999; Tel-2c; Species: human, Homo sapiens. XX P0 A C G T 01 1 2 0 2 Y 02 0 1 0 4 T 03 5 0 0 0 A 04 0 5 0 0 C 05 0 0 0 5 T 06 0 0 0 5 T 07 0 5 0 0 C 08 0 5 0 0 C 09 0 0 1 4 T 10 0 0 5 0 G XX BA 5 compiled binding sequences XX BS TTACTTCCGG; R02386; 6; 10;; n. BS CTACTTCCTG; R12017; 9; 10;; n. BS CTACTTCCTG; R12018; 15; 10;; n. BS TCACTTCCTG; R12019; 4; 10;; n. BS ATACTTCCTG; R12020; 10; 10;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00679 XX ID I$TLL_Q6 XX DT 08.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Tll XX BF T00789; Tll; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 8 0 2 0 A 02 10 0 0 0 A 03 0 0 7 3 G 04 3 1 0 6 T 05 1 5 0 4 Y 06 6 0 0 4 W 07 8 1 0 1 A 08 5 2 3 0 R XX BA 10 compiled binding sequences XX BS AAGTTAAA; R02274; 5; 8;; n. BS AAGCTAAA; R02276; 11; 8;; n. BS AATAATCC; R02277; 1; 8;; p. BS AATATTAC; R02279; 1; 8;; n. BS GAGATTAA; R02281; 2; 8;; n. BS AAGTCAAA; R02282; 10; 8;; p. BS GATTCTTG; R02285; 1; 8;; p. BS AAGTCAAA; R04959; 3; 8;; p. BS AAGTCAAG; R04960; 3; 8;; p. BS AAGTCAAG; R04961; 3; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00681 XX ID P$WRKY_Q2 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA WRKY XX BF T03718; WRKY1; Species: parsley, Petroselinum crispum (P. hortense). BF T03973; WRKY1; Species: tobacco, Nicotiana tabacum. BF T03720; WRKY3; Species: parsley, Petroselinum crispum (P. hortense). BF T03728; WRKY3; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 0 1 0 4 T 02 0 0 1 4 T 03 4 0 0 1 A 04 0 2 0 3 Y 05 0 0 0 5 T 06 0 3 0 2 Y 07 3 0 2 0 R 08 0 0 5 0 G 09 0 1 0 4 T 10 0 5 0 0 C 11 5 0 0 0 A XX BA 5 compiled binding sequences XX BS TTTCTCAGTCA; R09155; 11; 11;; n. BS TTACTCGGTCA; R09215; 16; 11;; n. BS TTATTCAGCCA; R09217; 4; 11;; p. BS CTATTTAGTCA; R09219; 7; 11;; n. BS TGATTTGGTCA; R09225; -1; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00683 XX ID F$XBP1_Q2 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA XBP1 XX BF T03707; XBP1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 1 9 1 2 C 02 3 3 0 7 T 03 0 0 0 13 T 04 0 13 0 0 C 05 0 0 13 0 G 06 13 0 0 0 A 07 0 0 13 0 G XX BA 13 compiled binding sequences XX BS TTTCGAG; R09242; 3; 7;; n. BS TTTCGAG; R09243; 3; 7;; n. BS CCTCGAG; R09291; 3; 7;; n. BS CCTCGAG; R09292; 3; 7;; n. BS CCTCGAG; R09729; 3; 7;; n. BS ATTCGAG; R09730; 3; 7;; n. BS CTTCGAG; R09731; 3; 7;; n. BS CTTCGAG; R09732; 3; 7;; n. BS CATCGAG; R09733; 2; 7;; p. BS CTTCGAG; R09734; 3; 7;; n. BS CATCGAG; R09735; 2; 7;; p. BS GATCGAG; R09736; 3; 7;; n. BS CTTCGAG; R09737; 3; 7;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00684 XX ID V$XPF1_Q6 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA XPF-1 XX BF T00906; XPF-1; Species: dog, Canis canis. XX P0 A C G T 01 0 0 1 4 T 02 0 5 0 0 C 03 2 0 1 2 W 04 0 0 4 1 G 05 3 0 2 0 R 06 2 0 2 1 R 07 0 2 3 0 S 08 5 0 0 0 A 09 3 2 0 0 M 10 0 4 1 0 C XX BA 5 compiled binding sequences XX BS TCAGGGCACC; R00223; -1; 10;; p. BS TCATGTCACC; R00400; -1; 10;; p. BS GCGGAGGAAG; R00403; 14; 10;; p. BS TCTGAAGAAC; R03499; 13; 10;; p. BS TCTGAAGAAC; R03500; -8; 10;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00687 XX ID V$ALPHACP1_01 XX DT 08.03.2002 (created); ela. DT 13.03.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA alpha-CP1 XX BF T00150; NF-Y; Species: human, Homo sapiens. BF T01203; NF-Y; Species: human, Homo sapiens. BF T00083; NF-Y; Species: mouse, Mus musculus. BF T00092; NF-Y; Species: mouse, Mus musculus. BF T00153; NF-Y; Species: mouse, Mus musculus. BF T00613; NF-Y; Species: mouse, Mus musculus. BF T01202; NF-Y; Species: mouse, Mus musculus. XX P0 A C G T 01 1 5 0 1 C 02 6 1 0 0 A 03 1 0 5 1 G 04 0 7 0 0 C 05 0 7 0 0 C 06 7 0 0 0 A 07 7 0 0 0 A 08 0 0 0 7 T 09 0 1 6 0 G 10 7 0 0 0 A 11 0 0 7 0 G XX BA 7 selected sequences XX BS CAGCCAATGAG; R02874; 8; 11;; p. BS CCTCCAATGAG; R02875; 8; 11;; p. BS CAGCCAATGAG; R02876; 8; 11;; p. BS CAGCCAATGAG; R02877; 8; 11;; p. BS CAGCCAATGAG; R02878; 8; 11;; p. BS AAGCCAATGAG; R02880; 16; 11;; n. BS TAACCAATCAG; R02881; 8; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00689 XX ID N$UNC86_Q2 XX DT 08.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA unc-86 XX BF T01882; unc-86; Species: Caenorhabditis elegans. XX P0 A C G T 01 0 5 0 0 C 02 5 0 0 0 A 03 0 1 0 4 T 04 2 0 0 3 W 05 2 3 0 0 M 06 2 0 3 0 R 07 4 0 0 1 A 08 4 1 0 0 A 09 5 0 0 0 A 10 0 0 0 5 T XX BA 5 compiled binding sequences XX BS CACACAACAT; R08935; 9; 10;; p. BS CATTCGAAAT; R08936; 6; 10;; p. BS CATTCGAAAT; R08937; -6; 10;; p. BS CATAAGAAAT; R08938; 6; 10;; p. BS CATTAATAAT; R08939; -1; 10;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00690 XX ID V$AP3_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA AP-3 XX BF T01150; AP-3; Species: chick, Gallus gallus. BF T00039; AP-3 (2); Species: human, Homo sapiens. XX P0 A C G T 01 1 3 0 7 T 02 0 11 0 0 C 03 0 5 0 6 Y 04 6 4 1 0 M 05 7 4 0 0 M 06 11 0 0 0 A 07 0 3 1 7 T 08 3 1 0 7 T XX BA 11 compiled binding sequences XX BS TCTCAATT; R01395; 6; 8;; n. BS TCTCAATT; R01398; -8; 8;; n. BS TCCAAATA; R02583; -2; 8;; n. BS TCTGAATT; R02584; -4; 8;; p. BS TCTACAGT; R02585; -8; 8;; n. BS ACCACATT; R02587; 13; 8;; n. BS TCTAAACT; R02588; 8; 8;; n. BS TCCCAACA; R02589; -2; 8;; n. BS CCTAAATC; R02951; 18; 8;; p. BS CCCACACT; R03696; -5; 8;; n. BS CCCCCATA; R03697; -4; 8;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00691 XX ID V$ATF1_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA ATF-1 XX BF T00968; ATF-1; Species: human, Homo sapiens. BF T01304; ATF-1; Species: mouse, Mus musculus. XX P0 A C G T 01 0 9 0 0 C 02 0 3 1 5 Y 03 1 4 1 3 Y 04 0 1 1 7 T 05 0 2 7 0 G 06 9 0 0 0 A 07 1 8 0 0 C 08 0 0 9 0 G 09 3 0 0 6 T 10 1 8 0 0 C 11 8 0 0 1 A XX BA 9 compiled binding sequences XX BS CTGTGACGAAA; R00343; 7; 11;; n. BS CTCTGACGTCT; R00777; 4; 11;; p. BS CCCTGAAGACA; R00779; 17; 11;; p. BS CGTTGACGACA; R00780; 5; 11;; p. BS CTCTGACGTCA; R00963; 6; 11;; p. BS CTCTGACGTCA; R01358; 3; 11;; n. BS CCTCCACGTCA; R03911; 10; 11;; n. BS CTAGCACGTCA; R03918; 1; 11;; p. BS CCTTGACGTCA; R04356; 6; 11;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00692 XX ID I$ANTP_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA Antp XX BF T00026; Antp; Species: fruit fly, Drosophila melanogaster. BF T03839; Antp; Species: spider, Cupiennius salei. BF T03847; Antp; Species: red flour beetle, Tribolium castaneum. BF T03856; Antp; Species: firebrat, Thermobia domestica. XX P0 A C G T 01 0 0 0 5 T 02 0 0 0 5 T 03 3 0 0 2 W 04 0 0 1 4 T 05 0 3 0 2 Y 06 2 3 0 0 M 07 1 0 0 4 T XX BA 5 compiled binding sequences XX BS TTATTAA; R01678; 4; 7;; p. BS TTTTTCT; R02504; 2; 7;; n. BS TTTTCAT; R02505; -9; 7;; p. BS TTATCCT; R02506; 15; 7;; p. BS TTAGCCT; R02622; -4; 7;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00693 XX ID V$E12_Q6 XX DT 13.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA E12 XX BF T00204; E12; Species: human, Homo sapiens. BF T00675; E12; Species: rat, Rattus norvegicus. BF T01786; E12; Species: mouse, Mus musculus. BF T01787; E12; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 4 2 5 0 R 02 4 1 6 0 R 03 0 11 0 0 C 04 11 0 0 0 A 05 0 0 11 0 G 06 2 1 8 0 G 07 0 0 0 11 T 08 0 0 11 0 G 09 1 4 3 3 N 10 2 6 1 2 C 11 3 3 5 0 V XX BA 11 compiled binding sequences XX BS GACAGGTGCTG; R00019; 5; 11;; n. BS GACAGGTGCCC; R00223; 3; 11;; n. BS AGCAGGTGTTG; R00241; 2; 11;; n. BS GGCAGGTGGCC; R00881; 1; 11;; p. BS GACAGCTGCAG; R02898; 11; 11;; p. BS AGCAGGTGCAA; R03074; 3; 11;; p. BS GGCAGGTGAGG; R03109; -3; 11;; n. BS AACAGGTGTCA; R03471; 2; 11;; p. BS CGCAGATGTCC; R04046; 17; 11;; n. BS AGCAGGTGGCG; R04418; 8; 11;; n. BS CCCAGATGGCA; R08512; -3; 11;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00694 XX ID V$E4F1_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA E4F1 XX BF T00223; E4F1; Species: human, Homo sapiens. XX P0 A C G T 01 0 2 3 0 S 02 1 2 0 2 Y 03 0 1 0 4 T 04 4 0 0 1 A 05 0 5 0 0 C 06 0 0 5 0 G 07 0 0 0 5 T 08 0 5 0 0 C 09 5 0 0 0 A 10 0 4 0 1 C XX BA 5 compiled binding sequences XX BS CTTTCGTCAC; R00343; 6; 10;; p. BS GCCACGTCAC; R00348; 1; 10;; n. BS CCTACGTCAC; R00349; 1; 10;; n. BS GATACGTCAC; R00351; 1; 10;; n. BS GTTACGTCAT; R00364; -3; 10;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00695 XX ID V$ETF_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA ETF XX BF T00270; ETF; Species: human, Homo sapiens. BF T04737; ETF; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 0 11 2 G 02 4 5 4 0 V 03 0 0 12 1 G 04 0 0 13 0 G 05 5 8 0 0 M 06 0 2 11 0 G 07 0 0 13 0 G XX BA 13 compiled binding sequences XX BS GGGGAGG; R00042; 9; 7;; n. BS GGGGCGG; R00043; -4; 7;; p. BS GGGGCGG; R00044; 19; 7;; p. BS GAGGCGG; R00045; 17; 7;; p. BS GCGGCGG; R00046; -9; 7;; p. BS GAGGAGG; R00379; -9; 7;; n. BS GCGGCCG; R00380; 17; 7;; p. BS GCGGAGG; R00382; -5; 7;; n. BS GAGGCCG; R01371; -10; 7;; n. BS TGGGCGG; R01375; -1; 7;; p. BS TCGGAGG; R11017; 6; 7;; n. BS GCTGAGG; R11039; 1; 7;; p. BS GAGGCGG; R11040; 7; 7;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00696 XX ID I$EN_Q6 XX DT 13.03.2002 (created); ela. DT 14.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA En XX BF T00253; En; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 0 6 1 4 Y 02 0 9 0 2 C 03 9 0 0 2 A 04 8 0 1 2 A 05 0 0 0 11 T 06 0 0 0 11 T 07 11 0 0 0 A XX BA 11 compiled binding sequences XX BS TCAATTA; R00411; 12; 7;; p. BS TCAATTA; R00412; 14; 7;; n. BS CTATTTA; R00757; 3; 7;; n. BS CCTTTTA; R00998; 3; 7;; n. BS CCTGTTA; R01528; 14; 7;; n. BS TCAATTA; R01781; 3; 7;; p. BS CCAATTA; R01782; 1; 7;; p. BS CTAATTA; R01783; 2; 7;; n. BS GCAATTA; R01784; 3; 7;; p. BS CCAATTA; R01785; 1; 7;; p. BS TCAATTA; R01786; 1; 7;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00697 XX ID P$HBP1B_Q6 XX DT 13.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HBP-1b XX BF T00938; HBP-1b; Species: wheat, Triticum aestivum. XX P0 A C G T 01 2 1 1 4 N 02 0 0 3 5 K 03 1 5 0 2 C 04 1 1 3 3 N 05 0 2 6 0 G 06 2 3 0 3 H 07 0 5 0 3 Y 08 7 0 1 0 A 09 0 8 0 0 C 10 0 0 8 0 G 11 0 1 0 7 T 12 0 8 0 0 C 13 8 0 0 0 A 14 0 4 2 2 C XX BA 8 compiled binding sequences XX BS TTCGGCCACGTCAC; R00679; 1; 14;; p. BS AGCACATACGTCAG; R01609; 8; 14;; p. BS ATCCCTTACGTCAG; R01915; -1; 14;; n. BS TGATGCCACGTCAC; R03283; 7; 14;; n. BS TTTTGCCACGTCAC; R03284; 1; 14;; p. BS GTTGGACACGTCAT; R03285; 7; 14;; n. BS TGCTGTCGCGCCAC; R03678; 7; 14;; n. BS CTCGGTTACGTCAT; R08307; 1; 14;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00698 XX ID V$HEB_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA HEB XX BF T01503; HEB; Species: human, Homo sapiens. XX P0 A C G T 01 2 0 3 0 R 02 0 5 0 0 C 03 0 5 0 0 C 04 3 0 0 2 W 05 0 0 5 0 G 06 0 5 0 0 C 07 0 0 0 5 T 08 0 0 5 0 G XX BA 5 compiled binding sequences XX BS ACCTGCTG; R00242; 7; 8;; p. BS GCCAGCTG; R00850; 2; 8;; n. BS ACCTGCTG; R03074; 2; 8;; n. BS GCCAGCTG; R03471; 11; 8;; n. BS GCCAGCTG; R04158; 19; 8;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00699 XX ID V$ICSBP_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA ICSBP XX BF T00402; IRF-8; Species: mouse, Mus musculus. BF T02038; IRF-8; Species: human, Homo sapiens. BF T02037; IRF-8; Species: chick, Gallus gallus. XX P0 A C G T 01 4 0 3 0 R 02 7 0 0 0 A 03 6 1 0 0 A 04 3 1 3 0 R 05 1 1 0 5 T 06 0 0 7 0 G 07 7 0 0 0 A 08 7 0 0 0 A 09 7 0 0 0 A 10 0 6 1 0 C 11 0 1 0 6 T 12 2 0 5 0 G XX BA 7 compiled binding sequences XX BS AAAATGAAACTG; R00002; 5; 12;; p. BS GAAACGAAACCA; R00163; 5; 12;; p. BS AAACAGAAACTG; R00423; 3; 12;; n. BS GAAGTGAAAGTG; R00919; 8; 12;; p. BS AAAGTGAAACTA; R00950; 3; 12;; n. BS GAAGTGAAACTG; R01051; 6; 12;; n. BS AACATGAAACTG; R01094; 5; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00700 XX ID P$ROM_Q2 XX DT 13.03.2002 (created); ela. DT 13.03.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ROM XX BF T02809; ROM1; Species: french bean, Phaseolus vulgaris. BF T02810; ROM2; Species: french bean, Phaseolus vulgaris. XX P0 A C G T 01 0 1 4 0 G 02 1 4 0 0 C 03 0 5 0 0 C 04 5 0 0 0 A 05 0 5 0 0 C 06 0 3 2 0 S 07 0 0 0 5 T 08 0 5 0 0 C 09 5 0 0 0 A XX BA 5 compiled binding sequences XX BS GCCACGTCA; R08455; 1; 9;; p. BS GCCACCTCA; R08456; 1; 9;; p. BS GCCACCTCA; R08457; 1; 9;; p. BS GCCACCTCA; R08458; 1; 9;; p. BS CACACGTCA; R08459; 1; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00701 XX ID V$SMAD3_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA SMAD-3 XX BF T04096; Smad3; Species: human, Homo sapiens. BF T04149; Smad3; Species: zebra fish, Brachydanio rerio. BF T04210; Smad3; Species: mouse, Mus musculus. BF T04248; Smad3; Species: chick, Gallus gallus. BF T04251; Smad3; Species: domestic pig, Sus scrofa. BF T04431; Smad3; Species: rat, Rattus norvegicus. XX P0 A C G T 01 1 2 0 6 T 02 1 0 8 0 G 03 0 0 2 7 T 04 0 9 0 0 C 05 0 1 0 8 T 06 0 0 9 0 G 07 2 2 0 5 T 08 0 9 0 0 C 09 1 1 0 7 T XX BA 9 compiled binding sequences XX BS TGTCTGACT; R09881; -4; 9;; n. BS TGTCTGCCC; R09935; 33; 9;; p. BS TGTCTGTCT; R09952; 3; 9;; n. BS CATCTGTCT; R09955; 8; 9;; n. BS CGGCTGACT; R09967; 21; 9;; n. BS AGTCTGTCT; R10061; 6; 9;; p. BS TGGCCGTCT; R10063; 18; 9;; n. BS TGTCTGCCA; R10069; 18; 9;; n. BS TGTCTGTCT; R10078; 1; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00702 XX ID P$SPF1_Q2 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA SPF1 XX BF T03975; SPF1; Species: Sweet potato, Ipomoea batatas. XX P0 A C G T 01 4 0 0 3 W 02 4 3 0 0 M 03 7 0 0 0 A 04 0 2 0 5 T 05 7 0 0 0 A 06 0 0 7 0 G 07 0 0 0 7 T 08 5 1 1 0 A 09 3 0 1 3 W 10 3 0 0 4 W XX BA 7 compiled binding sequences XX BS ACATAGTCAA; R09476; 6; 10;; n. BS ACACAGTGAT; R09478; -3; 10;; n. BS TAATAGTATT; R09479; -2; 10;; n. BS AAATAGTATT; R09481; -1; 10;; p. BS TAATAGTAAT; R09482; -1; 10;; p. BS TAATAGTATA; R09483; -1; 10;; p. BS ACACAGTAGA; R09486; 2; 10;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00703 XX ID F$TAF_Q6 XX DT 13.03.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TAF XX BF T00778; TAF; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 0 6 0 0 C 02 0 0 6 0 G 03 0 0 0 6 T 04 1 2 1 2 N 05 1 2 1 2 N 06 2 1 3 0 R 07 4 0 2 0 A 08 3 1 1 1 A 09 4 0 2 0 A 10 0 3 0 3 Y 11 0 0 6 0 G 12 5 0 0 1 A 13 0 4 0 2 C 14 2 2 0 2 H 15 4 0 0 2 A XX BA 6 compiled binding sequences XX BS CGTTGGGAATGATCA; R00201; 2; 15;; n. BS CGTTCCACGTGACTA; R00204; 3; 15;; p. BS CGTGTGAGACGACAT; R00255; 3; 15;; p. BS CGTCAGATACGTCAT; R01211; -6; 15;; p. BS CGTCTAGAGTGACCA; R01336; 1; 15;; p. BS CGTACAAAACGATTA; R02578; -2; 15;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00704 XX ID V$TEF1_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA TEF-1 XX BF T01124; TEF-1; Species: mouse, Mus musculus. BF T00760; TEF-1; Species: human, Homo sapiens. BF T00806; TEF-1; Species: human, Homo sapiens. BF T02362; TEF-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 0 5 0 G 02 2 0 3 0 R 03 3 0 2 0 R 04 5 0 0 0 A 05 0 0 0 5 T 06 0 0 5 0 G XX BA 5 compiled binding sequences XX BS GAGATG; R01286; 24; 6;; p. BS GAGATG; R01403; -4; 6;; p. BS GGAATG; R01414; 2; 6;; n. BS GGAATG; R02030; 2; 6;; p. BS GGAATG; R03900; 7; 6;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00706 XX ID V$TFIII_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA TFII-I XX BF T00824; TFII-I; Species: human, Homo sapiens. BF T04130; TFII-I; Species: human, Homo sapiens. XX P0 A C G T 01 2 0 2 1 R 02 0 0 5 0 G 03 4 0 1 0 A 04 0 1 3 1 G 05 0 0 4 1 G 06 0 0 3 2 K 07 5 0 0 0 A 08 0 0 5 0 G 09 0 0 5 0 G XX BA 5 compiled binding sequences XX BS AGGTGTAGG; R00992; -3; 9;; p. BS AGAGTGAGG; R02081; -1; 9;; n. BS TGACGTAGG; R09690; -4; 9;; p. BS GGAGGGAGG; R09691; -6; 9;; n. BS GGAGGGAGG; R09692; 16; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00707 XX ID V$TFIIA_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA TFIIA XX BF T00817; TFIIA; Species: human, Homo sapiens. BF T02216; TFIIA-alpha/beta precursor (major); Species: human, Homo sapiens. BF T02217; TFIIA-alpha/beta precursor (minor); Species: human, Homo sapiens. BF T02224; TFIIA-gamma; Species: human, Homo sapiens. XX P0 A C G T 01 0 1 0 4 T 02 3 2 0 0 M 03 0 0 0 5 T 04 2 0 2 1 R 05 2 1 0 2 W 06 3 0 2 0 R 07 5 0 0 0 A 08 0 1 4 0 G 09 0 1 4 0 G 10 3 0 2 0 R 11 1 2 2 0 S 12 0 3 2 0 S XX BA 5 compiled binding sequences XX BS CATATAAGCAGC; R00705; -2; 12;; p. BS TATTTAAGGACC; R00970; 7; 12;; p. BS TATAAAAGGGGG; R00996; 1; 12;; p. BS TCTGCGAGGGCC; R01002; 20; 12;; p. BS TCTGAGACGAAG; R03170; -4; 12;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00710 XX ID I$ZEN_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA Zen XX BF T00917; Zen-1; Species: fruit fly, Drosophila melanogaster. BF T02099; Zen-2; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 5 0 0 4 W 02 0 8 0 1 C 03 9 0 0 0 A 04 1 0 1 7 T 05 0 1 0 8 T 06 4 1 0 4 W 07 7 2 0 0 A 08 5 4 0 0 M XX BA 9 compiled binding sequences XX BS ACATTTAA; R00411; 5; 8;; n. BS ACATTTAA; R00412; 1; 8;; p. BS TCATTTAA; R00413; 1; 8;; p. BS TCAGCACC; R00418; 1; 8;; p. BS ACATTTAC; R01282; 10; 8;; n. BS TCATTCCA; R01283; 2; 8;; n. BS ACATTAAC; R01284; 3; 8;; n. BS TTATTAAA; R01678; 4; 8;; p. BS ACAATAAC; R09872; 32; 8;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00711 XX ID V$ZTA_Q2 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA Zta XX BF T00923; Zta; Species: EBV, Epstein-Barr virus. XX P0 A C G T 01 3 2 0 6 T 02 3 4 2 2 N 03 7 3 1 0 A 04 1 6 2 2 C 05 2 3 2 4 N 06 3 3 3 2 N 07 0 0 0 11 T 08 0 0 7 4 K 09 6 0 5 0 R 10 0 11 0 0 C 11 5 0 0 6 W 12 0 11 0 0 C 13 11 0 0 0 A XX BA 11 compiled binding sequences XX BS AAGCACTGACTCA; R00196; 2; 13;; p. BS TTATTCTTGCTCA; R00295; -6; 13;; p. BS TCACCATGACACA; R00296; 1; 13;; n. BS TCACCTTTGCACA; R00297; 1; 13;; n. BS ACCTGGTGACACA; R00298; -6; 13;; p. BS CTAAAATGACACA; R00299; -6; 13;; p. BS TAAGGTTTGCTCA; R00301; 1; 13;; n. BS AAAGTATTACACA; R00302; -6; 13;; p. BS TGCCTGTGGCTCA; R03344; 6; 13;; n. BS TGCCTGTGGCTCA; R03345; -9; 13;; n. BS CCACCCTGACTCA; R04261; 16; 13;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00712 XX ID V$MYOGENIN_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA myogenin XX BF T00528; myogenin; Species: mouse, Mus musculus. BF T01531; myogenin; Species: chick, Gallus gallus. BF T01532; myogenin; Species: rat, Rattus norvegicus. BF T01533; myogenin; Species: quail, Coturnix coturnix. BF T03900; myogenin; Species: Common carp, Cyprinus carpio. BF T03901; myogenin; Species: rainbow trout, Oncorhynchus mykiss. XX P0 A C G T 01 4 0 5 0 R 02 2 2 5 0 G 03 0 9 0 0 C 04 9 0 0 0 A 05 0 0 8 1 G 06 0 4 4 1 S 07 0 0 0 9 T 08 0 0 9 0 G XX BA 9 compiled binding sequences XX BS GACAGGTG; R00019; 8; 8;; n. BS AGCAGGTG; R00242; 6; 8;; n. BS GCCAGCTG; R00850; 2; 8;; n. BS GACAGCTG; R02898; 11; 8;; p. BS AGCAGGTG; R03074; 3; 8;; p. BS GGCAGGTG; R03109; 1; 8;; n. BS AGCAGCTG; R04158; 17; 8;; p. BS AGCAGTTG; R04409; 116; 8;; p. BS GCCATCTG; R08512; -2; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00713 XX ID F$TBP_Q6 XX DT 13.03.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA TBP XX BF T00798; TBP; Species: yeast, Saccharomyces cerevisiae. BF T00795; TBP; Species: fission yeast, Schizosaccharomyces pombe. XX P0 A C G T 01 0 8 3 12 Y 02 8 6 2 7 N 03 1 7 0 15 T 04 4 0 1 18 T 05 0 2 0 21 T 06 23 0 0 0 A 07 3 0 0 20 T 08 20 0 0 3 A 09 2 1 4 16 T XX BA 23 compiled binding sequences XX BS TTTTTATAA; R00047; -1; 9;; n. BS TGCTTATAT; R00705; -1; 9;; n. BS TCCTTAAAT; R00970; 8; 9;; n. BS CTTTTATAG; R00998; -1; 9;; n. BS GCATTATAT; R01732; 2; 9;; n. BS CGCTTAAAT; R02688; -2; 9;; p. BS CACTTAAAT; R03080; 13; 9;; p. BS CACATATAT; R03161; 10; 9;; n. BS GTTTTATAT; R03162; 7; 9;; n. BS TATATATAT; R03163; 8; 9;; p. BS TCCTTATAC; R03164; -3; 9;; p. BS CTCGTATAG; R03165; -4; 9;; p. BS CCTTCATAA; R03167; -2; 9;; p. BS CTTTTATAT; R03172; -1; 9;; n. BS TCTTTATAG; R03173; -1; 9;; n. BS TATTTATTT; R03809; 6; 9;; p. BS CATATATAT; R03810; 15; 9;; p. BS GTTTCATAT; R03811; 10; 9;; p. BS TTTTTATAT; R03812; 16; 9;; n. BS TATATATAT; R03813; 28; 9;; p. BS TATTTATTT; R03814; 14; 9;; n. BS TCTTTATTT; R03815; 4; 9;; p. BS TATTTATAG; R08480; 3; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00716 XX ID V$ZF5_01 XX DT 29.05.2002 (created); vma. DT 29.05.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ZF5 XX BF T02349; ZF5; Species: mouse, Mus musculus. XX P0 A C G T 01 2 0 16 1 G 02 2 8 8 1 S 03 3 1 15 0 G 04 2 14 2 1 C 05 3 1 14 1 G 06 1 15 1 2 C 07 2 2 13 2 G 08 9 0 10 0 R XX BA 19 selected binding sequences XX BS GGAGGCGG; R12577; 18; 8;; p. BS GAGCGCGG; R12578; 17; 8;; p. BS ACGCGCCA; R12579; 13; 8;; p. BS GCGAGCAA; R12580; 1; 8;; p. BS GCAAGCGG; R12581; 3; 8;; p. BS AGGCGCGG; R12582; 14; 8;; p. BS GGGCGCCA; R12583; 5; 8;; p. BS GGGCAGGA; R12584; 1; 8;; p. BS GCGCGCGA; R12585; 1; 8;; p. BS GTGTGCGG; R12586; 2; 8;; p. BS GCGCGCGG; R12587; 17; 8;; p. BS TCGCGAAG; R12588; 1; 8;; p. BS GGACGTGA; R12589; 4; 8;; p. BS GGCCACGG; R12590; 15; 8;; p. BS GGGCACTG; R12591; 2; 8;; p. BS GAGCGCTA; R12592; 1; 8;; p. BS GCGGGCGG; R12593; 17; 8;; p. BS GGGCTTGA; R12594; 1; 8;; p. BS GCGCCCGA; R12595; 1; 8;; p. XX CC sequences were selected from a pool of 25-mers (flanked by 20 constant bp on each side) by binding to GST-ZF5 fusion protein in 4 selection and amplification cycles, and afterwards analyzed by EMSA and footprinting [1] XX RN [1]; RE0017827. RX PUBMED: 10049742. RA Obata T., Yanagidani A., Yokoro K., Numoto M., Yamamoto S. RT Analysis of the consensus binding sequence and the DNA-binding domain of ZF5. RL Biochem. Biophys. Res. Commun. 255:528-534 (1999). XX // AC M00717 XX ID V$PAX8_01 XX DT 01.06.2002 (created); vma. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Pax-8 XX DE Pax-8 binding sites XX BF T01828; Pax-8; Species: mouse, Mus musculus. BF T01829; Pax-8; Species: rat, Rattus norvegicus. BF T02898; Pax-8; Species: human, Homo sapiens. BF T03220; Pax-8; Species: Japanese pufferfish, Fugu rubripes. BF T03222; Pax-8; Species: zebra fish, Brachydanio rerio. XX P0 A C G T 01 5 15 8 7 N 02 15 7 5 8 N 03 7 8 11 9 N 04 7 7 2 19 T 05 9 9 8 9 N 06 11 7 5 12 N 07 7 11 3 14 N 08 3 5 23 4 G 09 9 17 6 3 N 10 10 2 20 3 G 11 2 1 4 28 T 12 3 1 27 4 G 13 23 3 6 3 A 14 10 4 14 7 N 15 8 8 5 14 N XX BA 35 selected sequences XX BS TTCTTCTCCAAGAAC; R12655; 2; 15;; p. BS GACTCATGCGTAGAG; R12656; 2; 15;; p. BS CACTGGTGCATTGTT; R12657; 2; 15;; p. BS TTGAATAACGTGGAG; R12658; 2; 15;; p. BS GCCCAGTGCGTCTGC; R12659; 2; 15;; p. BS CTATTTCTATTGATC; R12660; 2; 15;; p. BS CAGTTAGTCATTAGA; R12661; 2; 15;; p. BS ACTTGCCGAGTGAGT; R12662; 2; 15;; p. BS TTAGAACCCGGGAGT; R12663; 2; 15;; p. BS TCTCGGCGGGTGAGT; R12664; 2; 15;; p. BS TATTGAAGCGTGAAG; R12665; 2; 15;; p. BS GACTCAAGCATGAGA; R12666; 2; 15;; p. BS CAACACTGCGTAAGA; R12667; 2; 15;; p. BS CAGTTCTGCGTGAAT; R12668; 2; 15;; p. BS TGACACGGGGTGAAT; R12669; 2; 15;; p. BS CGGTCATTCGAGTAG; R12670; 2; 15;; p. BS CCGTATAGATTGCTA; R12671; 2; 15;; p. BS AGATGTCGTGGGATC; R12672; 2; 15;; p. BS CTGACTCGGGTGGGC; R12673; 2; 15;; p. BS TCTACTCGAATGACC; R12674; 2; 15;; p. BS GTCCTCTTCATGAGT; R12675; 2; 15;; p. BS CAATCGAGAGTGATT; R12676; 2; 15;; p. BS ACTCCATGGTTGCAT; R12677; 2; 15;; p. BS CAGTTCTGTGTACCA; R12678; 2; 15;; p. BS CTGCAATGAGTGGTT; R12679; 2; 15;; p. BS CATGGTTGGATTACC; R12680; 2; 15;; p. BS CATTAATGCCCGAGT; R12681; 2; 15;; p. BS CTGACTCGAGTGGAA; R12682; 2; 15;; p. BS GCCATTCCCAGGAGT; R12683; 2; 15;; p. BS GACTCGAGCGTGTGT; R12684; 2; 15;; p. BS GATTGATCCATGACA; R12685; 2; 15;; p. BS GGTTTTAAACTGAGT; R12686; 2; 15;; p. BS AGATGTCGTGGGATC; R12687; 2; 15;; p. BS AAGAATCCAATGAGA; R12688; 2; 15;; p. BS CAGATAGAGGTTAAG; R12689; 2; 15;; p. XX CC sequences were selected by Pax-8 paired domain (GST fusion protein) from a pool of 64bp-oligonucleotides with a core of 18 randomly degenerate bases in 7 selection and amplification cycles [1] XX RN [1]; RE0007032. RX PUBMED: 8615801. RA Pellizzari L., Fabbro D., Longigro R., Dilauro R., Damante G. RT A network of specific minor-groove contacts is a common characteristic of paired-domain-DNA interactions RL Biochem. J. 315:363-367 (1996). XX // AC M00720 XX ID V$CACBINDINGPROTEIN_Q6 XX DT 02.06.2002 (created); ela. DT 12.12.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA CAC-binding protein XX BF T00076; CAC-binding protein; Species: mouse, Mus musculus. XX P0 A C G T 01 2 0 5 0 G 02 4 0 3 0 R 03 0 0 6 1 G 04 0 0 7 0 G 05 0 3 4 0 S 06 2 0 0 5 T 07 0 0 7 0 G 08 0 0 7 0 G 09 0 2 5 0 G XX BA 7 compiled sequences XX BS GGGGCAGGG; R01251; -2; 9;; n. BS AAGGGTGGG; R01252; 5; 9;; n. BS GAGGGAGGC; R01255; 3; 9;; n. BS GAGGGTGGG; R03201; -2; 9;; n. BS GAGGGTGGG; R04290; -3; 9;; p. BS AGGGCTGGC; R04291; -8; 9;; p. BS GGTGCTGGG; R04295; -7; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00721 XX ID V$CACCCBINDINGFACTOR_Q6 XX DT 02.06.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CACCC-binding factor XX BF T00077; CACCC-binding factor; Species: human, Homo sapiens. XX P0 A C G T 01 0 6 0 1 C 02 5 0 2 0 A 03 2 1 2 2 N 04 0 5 1 1 C 05 2 4 1 0 C 06 1 3 1 2 N 07 1 2 2 2 N 08 3 0 0 4 W 09 0 0 7 0 G 10 0 0 7 0 G 11 0 0 7 0 G 12 0 0 1 6 T 13 0 0 7 0 G 14 2 0 2 3 D 15 1 0 6 0 G 16 0 1 6 0 G XX BA 7 compiled sequences XX BS CAACCCTAGGGTGTGG; R00520; 1; 16;; n. BS CGGCATCAGGGTGGGG; R00531; 1; 16;; n. BS CAACCCATGGGTGGAG; R00560; 6; 16;; n. BS CAGGAAGTGGGTGAGG; R00596; -3; 16;; n. BS TGCTGGCAGGGTGAGC; R01474; -3; 16;; n. BS CATCCTGTGGGGGTGG; R03441; -3; 16;; p. BS CATCCCTTGGGTGTGG; R03663; 4; 16;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00722 XX ID V$COREBINDINGFACTOR_Q6 XX DT 02.06.2002 (created); ela. DT 01.04.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA core-binding factor XX BF T00144; core-binding factor; Species: cat, Felis silvestris catus. BF T00145; core-binding factor; Species: mouse, Mus musculus. BF T01530; core-binding factor; Species: cattle, Bos taurus. XX P0 A C G T 01 1 0 0 8 T 02 0 0 9 0 G 03 0 1 0 8 T 04 0 0 9 0 G 05 0 0 9 0 G 06 0 1 0 8 T 07 2 2 0 5 T 08 4 0 0 5 W XX BA 9 compiled sequences XX BS TGTGGTAA; R01140; 1; 8;; p. BS TGTGGTAT; R01643; 1; 8;; p. BS TGTGGTCA; R01647; 1; 8;; p. BS TGTGGTTA; R01657; 2; 8;; p. BS TGCGGCTA; R04331; 3; 8;; n. BS AGTGGTTT; R04332; 1; 8;; n. BS TGTGGTTT; R04333; 3; 8;; p. BS TGTGGTTT; R04334; 2; 8;; n. BS TGTGGTCT; R04335; 1; 8;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00723 XX ID I$GAGAFACTOR_Q6 XX DT 02.06.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA GAGA factor XX BF T00301; GAGA factor; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 13 2 6 3 A 02 2 11 12 0 S 03 13 2 1 9 W 04 0 2 21 2 G 05 22 2 1 0 A 06 1 0 24 0 G 07 12 13 0 0 M 08 5 0 20 0 G 09 7 9 4 5 N 10 9 3 12 1 R 11 16 0 6 3 A XX BA 25 compiled sequences XX BS AATGAACGAGA; R01517; -1; 11;; p. BS AGAGAGCGCAA; R01520; 4; 11;; p. BS ACAGAGAGCCA; R01524; 2; 11;; n. BS GCAGAGCAAAG; R01526; 16; 11;; p. BS AAAGAGAGTAG; R01862; 6; 11;; n. BS AGAGAGCGGAA; R01863; 4; 11;; n. BS AGAGAGCGCAA; R01864; 4; 11;; n. BS TCAGAGCGTGA; R01865; 7; 11;; p. BS CGTGAGCGGGT; R01867; 6; 11;; p. BS TGAGCGAACGA; R02058; 2; 11;; n. BS AGAGAGAGAGA; R02059; 2; 11;; n. BS GCTCAGCACCG; R02062; 2; 11;; p. BS GCTGAGAGTTA; R02063; 1; 11;; n. BS NGCGAGCGGGA; R02064; 12; 11;; n. BS GCTGGGAGCGG; R02065; -1; 11;; n. BS CCAGAGCGCAG; R02066; 4; 11;; p. BS GCTGAGAGCAG; R02067; 1; 11;; p. BS TGTGAGCGGGA; R02266; 3; 11;; p. BS AGTGAGAATCT; R02267; 2; 11;; p. BS AGACAGAGCGT; R02268; 3; 11;; p. BS ACCGCGAGTAA; R02269; 1; 11;; p. BS ACTTAGCAAAA; R02270; 11; 11;; n. BS AGGTAGAGAGA; R02271; 3; 11;; n. BS GCAGAGCGAGA; R02558; 19; 11;; n. BS AGAGAGAGAGA; R05045; 6; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00724 XX ID V$HNF3ALPHA_Q6 XX DT 02.06.2002 (created); ela. DT 12.12.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA HNF-3alpha XX BF T02512; HNF-3alpha; Species: human, Homo sapiens. BF T00371; HNF-3alpha; Species: rat, Rattus norvegicus. XX P0 A C G T 01 2 2 1 34 T 02 16 0 23 0 R 03 0 0 0 39 T 04 0 0 1 38 T 05 0 1 4 34 T 06 11 0 26 2 G 07 1 15 3 20 Y 08 8 4 1 26 T 09 5 13 0 21 Y 10 16 0 3 20 W 11 11 3 12 13 N XX BA 39 compiled sequences including 1 TRANSCompel site XX BS TATTGACTTAG; R00086; 1; 11;; p. BS TATTGGTTAGA; R00099; 19; 11;; p. BS TATTTACTCTT; R00581; 7; 11;; n. BS TGTTTGAACAG; R01462; 1; 11;; n. BS TATTGACTTAG; R01464; 1; 11;; n. BS TGTTTATTCAA; R01800; 9; 11;; n. BS TGTTTTGACAA; R02350; 4; 11;; p. BS CATTGATTTAG; R02678; 16; 11;; p. BS TGTTTACACAA; R02895; 10; 11;; p. BS TGTTTGTTCTT; R02970; -1; 11;; p. BS TATTTGCATAC; R02989; 7; 11;; p. BS TGTTCTTTTAT; R03140; 9; 11;; n. BS TATTTGTTTTG; R03142; 20; 11;; n. BS TATTTGCTAAA; R03143; 4; 11;; p. BS TATTTAGCTTT; R03144; 25; 11;; p. BS TATTTGCAATA; R03148; 5; 11;; p. BS TGTTTGTTCTA; R03150; 1; 11;; n. BS TATTTGTGTAG; R03444; 1; 11;; p. BS TGTTTGTTTTA; R04324; -1; 11;; p. BS TGTGTGCACAT; R04488; 1; 11;; p. BS GGTTTATTATT; R04489; -7; 11;; p. BS TGTTTGCACAA; R04490; -4; 11;; n. BS TGTTTGTCTTT; R04656; 3; 11;; n. BS AGTTTGTTTTG; R04663; 7; 11;; n. BS TATTTGCTTAT; R05017; 11; 11;; p. BS TATTTGCTCTG; R05029; 16; 11;; p. BS AGTTTGTTTTG; R05073; 8; 11;; n. BS TATTTGCTTGG; R05076; 5; 11;; n. BS TGTTTACCTTG; R05084; 9; 11;; p. BS CGTTTGTTTTA; R05085; 8; 11;; n. BS TGTTTGCACAT; R05086; 2; 11;; n. BS TGTTTGTTTTT; R05101; 7; 11;; p. BS TGTTTGTTTGT; R05102; 4; 11;; n. BS TGTTTGGTTTG; R05103; 11; 11;; p. BS TATTTATTTTA; R05104; 3; 11;; p. BS TGTTTGTTCTT; R05105; 3; 11;; p. BS TGTTTGTTCTC; R08137; 8; 11;; p. BS TGTTTGTCAAT; R08890; 9; 11;; p. BS TATTTACTTTC; C00278, s00475; 2; 11;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00725 XX ID V$HP1SITEFACTOR_Q6 XX DT 02.06.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HP1 site factor XX BF T00379; HP1 site factor; Species: rat, Rattus norvegicus. XX P0 A C G T 01 6 0 0 0 A 02 5 1 0 0 A 03 1 0 0 5 T 04 3 0 1 2 W 05 1 0 1 4 T 06 1 0 0 5 T 07 0 4 0 2 C 08 4 0 1 1 A 09 4 2 0 0 A 10 1 5 0 0 C 11 6 0 0 0 A 12 0 0 6 0 G XX BA 6 compiled sequences XX BS AATGATCTACAG; R00091; 10; 12;; p. BS AATTTTCAAAAG; R00100; 5; 12;; p. BS AATATTCACCAG; R00123; 4; 12;; p. BS ACTAGTTAACAG; R00434; 4; 12;; p. BS AATATTTGACAG; R00440; -2; 12;; n. BS AAATTACACCAG; R01625; -2; 12;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00726 XX ID V$USF2_Q6 XX DT 02.06.2002 (created); ela. DT 12.12.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA USF2 XX BF T00924; USF1:USF2; Species: rat, Rattus norvegicus. BF T05262; USF1:USF2; Species: rat, Rattus norvegicus. BF T00878; USF2; Species: human, Homo sapiens. BF T01555; USF2; Species: mouse, Mus musculus. BF T02115; USF2; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 6 0 0 C 02 6 0 0 0 A 03 0 3 2 1 S 04 0 0 6 0 G 05 0 2 1 3 Y 06 0 0 6 0 G XX BA 6 compiled sequences XX BS CAGGCG; R00336; -4; 6;; n. BS CACGTG; R00992; 8; 6;; p. BS CAGGCG; R04408; 16; 6;; n. BS CACGGG; R04419; 2; 6;; p. BS CATGTG; R04432; 8; 6;; p. BS CACGTG; R04439; 9; 6;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00727 XX ID V$SF1_Q6 XX DT 02.06.2002 (created); ela. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA SF-1 XX BF T02769; SF-1; Species: human, Homo sapiens. BF T01147; SF-1; Species: mouse, Mus musculus. BF T04002; SF-1; Species: rat, Rattus norvegicus. BF T04014; SF-1; Species: cattle, Bos taurus. BF T04015; SF-1; Species: domestic pig, Sus scrofa. BF T04016; SF-1; Species: chick, Gallus gallus. BF T04017; SF-1; Species: medaka, Oryzias latipes. BF T04018; SF-1; Species: frog, Rana rugosa. BF T04065; SF-1; Species: zebra fish, Brachydanio rerio. BF T04069; SF-1; Species: turtle, Trachemys scripta. XX P0 A C G T 01 0 0 1 7 T 02 2 0 5 1 G 03 6 0 2 0 R 04 0 8 0 0 C 05 0 8 0 0 C 06 0 0 0 8 T 07 0 0 0 8 T 08 0 0 8 0 G XX BA 8 compiled sequences including 3 TRANSCompel sites XX BS TGACCTTG; R01790; 1; 8;; n. BS TAGCCTTG; R02343; 5; 8;; p. BS GGACCTTG; R09689; 9; 8;; n. BS TTACCTTG; R09693; 2; 8;; n. BS TAACCTTG; R09694; 1; 8;; p. BS TGACCTTG; C00213, s00356; 1; 8;; p. BS TGGCCTTG; C00214, s00358; 1; 8;; p. BS TGACCTTG; C00220, s00369; 2; 8;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00728 XX ID F$ROX1_Q6 XX DT 02.06.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA ROX1 XX BF T01286; ROX1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 0 8 2 7 Y 02 0 9 5 3 S 03 1 7 1 8 Y 04 16 0 0 1 A 05 0 0 0 17 T 06 0 0 0 17 T 07 0 0 17 0 G 08 0 0 0 17 T 09 0 1 1 15 T XX BA 17 compiled sequences XX BS TGTATTGTT; R11728; 1; 9;; p. BS TCTATTGTT; R11729; 1; 9;; p. BS TCAATTGTT; R11731; 1; 9;; p. BS TGCTTTGTT; R11733; 1; 9;; p. BS CCCATTGTT; R11734; 1; 9;; p. BS CCGATTGTT; R11735; 1; 9;; p. BS CGCATTGTT; R11736; 1; 9;; p. BS CCTATTGTG; R11737; 1; 9;; p. BS GCTATTGTT; R11738; 1; 9;; p. BS TTTATTGTT; R11739; 1; 9;; p. BS GGCATTGTT; R11740; 1; 9;; p. BS CCTATTGTT; R11741; 1; 9;; p. BS TCCATTGTT; R11742; 1; 9;; p. BS CTCATTGTT; R11745; 1; 9;; p. BS TTCATTGTT; R11746; 1; 9;; p. BS CCTATTGTT; R12071; 1; 9;; p. BS CGTATTGTC; R12072; 1; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00729 XX ID V$CDX2_Q5 XX DT 02.06.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA Cdx-2 XX BF T02002; Cdx-2; Species: mouse, Mus musculus. BF T02003; Cdx-3; Species: golden (Syrian) hamster, Mesocricetus auratus. XX P0 A C G T 01 6 3 0 0 A 02 3 1 2 3 N 03 6 1 0 2 A 04 2 2 3 2 N 05 1 0 1 7 T 06 0 2 0 7 T 07 1 0 0 8 T 08 2 0 0 7 T 09 9 0 0 0 A 10 0 1 0 8 T 11 2 0 3 4 K 12 4 0 5 0 R 13 0 7 0 2 C 14 2 5 0 2 C XX BA 9 compiled sequences XX BS AAAGTTTTATTGCA; R04239; 3; 14;; n. BS AGTATTTTACAACC; R08848; -4; 14;; p. BS ATAATCTAATTACC; R08849; 29; 14;; p. BS AGACTCTAATTACC; R08850; 31; 14;; p. BS CCACTTTTATGGCC; R08858; 4; 14;; p. BS ATTGTTTTATGGTT; R08859; 3; 14;; p. BS CAAGATTTATGACA; R08873; 7; 14;; p. BS AAATTTATATTGTC; R08875; -2; 14;; p. BS CTCTGTTTATAGCT; R08886; -4; 14;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00730 XX ID F$HAC1_Q2 XX DT 02.06.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA HAC1 XX BF T02039; HAC1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 0 0 3 3 K 02 1 0 5 0 G 03 2 3 1 0 M 04 1 5 0 0 C 05 4 1 1 0 A 06 0 1 5 0 G 07 0 6 0 0 C 08 0 0 6 0 G 09 0 2 0 4 T 10 1 1 4 0 G 11 0 0 0 6 T 12 1 4 0 1 C XX BA 6 compiled sequences XX BS GGACAGCGTGTC; R12161; 7; 12;; p. BS TGCCAGCGCATC; R12162; 7; 12;; p. BS TGCCACCGTGTA; R12163; 7; 12;; p. BS GGGCGGCGCCTC; R12164; 7; 12;; p. BS TAACAGCGTGTT; R12167; 7; 12;; p. BS GGCACGCGTGTC; R12168; 7; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00731 XX ID V$OSF2_Q6 XX DT 02.06.2002 (created); ela. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA Osf2 XX BF T02281; AML3; Species: human, Homo sapiens. BF T02441; AML3; Species: rat, Rattus norvegicus. BF T03983; AML3a; Species: human, Homo sapiens. BF T02266; PEBP2alpha; Species: mouse, Mus musculus. XX P0 A C G T 01 8 0 2 0 A 02 0 10 0 0 C 03 0 10 0 0 C 04 8 0 2 0 A 05 0 10 0 0 C 06 10 0 0 0 A 07 5 1 2 2 N 08 6 3 1 0 M XX BA 10 compiled sequences including 1 TRANSCompel site XX BS ACCGCAGC; R01222; 5; 8;; p. BS ACCACATG; R01431; 4; 8;; n. BS ACCGCAAA; R02927; 4; 8;; p. BS GCCACATC; R04450; 22; 8;; p. BS ACCACAAC; R04644; 12; 8;; p. BS ACCACAGA; R05024; -3; 8;; n. BS ACCACAAA; R05025; 2; 8;; n. BS ACCACAAA; R05031; 12; 8;; n. BS GCCACACA; R05032; -7; 8;; n. BS ACCACAAA; C00231, s00389; 2; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00732 XX ID F$CAT8_Q6 XX DT 02.06.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CAT8 XX BF T03227; CAT8; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 0 10 0 0 C 02 0 10 0 0 C 03 8 0 2 0 A 04 0 1 1 8 T 05 0 1 0 9 T 06 1 5 3 1 S 07 3 2 5 0 R 08 2 1 2 5 N 09 0 10 0 0 C 10 0 10 0 0 C XX BA 10 compiled sequences XX BS CCATCCGTCC; R03791; 1; 10;; p. BS CCGTTCGTCC; R11747; 1; 10;; p. BS CCATTCATCC; R11749; 1; 10;; p. BS CCATTGGGCC; R11750; 1; 10;; p. BS CCATTGAGCC; R11751; 2; 10;; n. BS CCATTCAACC; R11753; 2; 10;; n. BS CCGGTGGTCC; R11755; 2; 10;; n. BS CCACTAGACC; R11758; 1; 10;; p. BS CCATTTCTCC; R11766; 2; 10;; n. BS CCATTCCCCC; R12094; 2; 10;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00733 XX ID V$SMAD4_Q6 XX DT 02.06.2002 (created); ela. DT 12.12.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA SMAD-4 XX BF T03882; Smad4; Species: rat, Rattus norvegicus. BF T03884; Smad4; Species: zebra fish, Brachydanio rerio. BF T05067; Smad4; Species: mouse, Mus musculus. BF T04292; Smad4; Species: human, Homo sapiens. BF T04252; Smad4; Species: domestic pig, Sus scrofa. XX P0 A C G T 01 1 2 7 0 G 02 1 1 3 5 K 03 1 4 5 0 S 04 4 0 6 0 R 05 0 0 6 4 K 06 0 2 5 3 K 07 0 7 2 1 C 08 8 1 1 0 A 09 0 0 10 0 G 10 4 5 0 1 M 11 0 10 0 0 C 12 8 0 0 2 A 13 2 3 3 2 N 14 2 7 0 1 C 15 0 4 0 6 Y XX BA 10 compiled sequences XX BS GAAGGGCAGACATTT; R09916; 32; 15;; n. BS ATGAGTCAGACACCT; R09937; -1; 15;; p. BS GTCAGGCAGACAGAC; R09952; -9; 15;; p. BS GTGATTCAGCCATCT; R09955; 12; 15;; n. BS GTGGGGGAGTCAGCC; R09967; 15; 15;; p. BS CGGGTCCCGCCTCCT; R10054; -1; 15;; p. BS GGCGGGCGGCCTAAT; R10056; -4; 15;; n. BS GCCGTCTAGACACCC; R10063; 10; 15;; n. BS CTGGGTGAGCCAACT; R10069; 1; 15;; p. BS GGCATGCAGCCAGCC; R10078; 28; 15;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00734 XX ID V$CIZ_01 XX DT 07.06.2002 (created); mas. DT 07.06.2002 (updated); mas. CO Copyright (C), Biobase GmbH. XX NA CIZ XX DE CIZ (Cas-associated zinc finger protein) XX BF T05137; CIZ6-1; Species: rat, Rattus norvegicus. BF T05136; CIZ8; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 17 22 0 S 02 39 0 0 0 A 03 39 0 0 0 A 04 39 0 0 0 A 05 39 0 0 0 A 06 39 0 0 0 A 07 15 10 13 1 N 08 5 13 6 15 N 09 9 15 7 8 N XX BA 39 binding sites selected from random oligonucleotides XX BS CAAAAACTC; R12614; 2; 9;; p. BS GAAAAAGCA; R12615; 1; 9;; p. BS CAAAAAAAC; R12616; 1; 9;; p. BS CAAAAAACT; R12617; 8; 9;; p. BS CAAAAACCG; R12618; 1; 9;; p. BS CAAAAAACG; R12619; 1; 9;; p. BS CAAAAAAAC; R12620; 2; 9;; p. BS CAAAAACCA; R12621; 3; 9;; p. BS CAAAAACTG; R12622; 3; 9;; p. BS CAAAAAATA; R12623; 3; 9;; p. BS CAAAAAAAC; R12624; 3; 9;; p. BS CAAAAAAAT; R12625; 3; 9;; p. BS CAAAAAAGT; R12626; 1; 9;; p. BS CAAAAAAGT; R12627; 3; 9;; p. BS CAAAAAACC; R12628; 4; 9;; p. BS CAAAAACTC; R12629; 2; 9;; p. BS CAAAAAATA; R12630; 2; 9;; p. BS GAAAAAAGA; R12631; 1; 9;; p. BS GAAAAACCG; R12632; 4; 9;; p. BS GAAAAAGTT; R12633; 7; 9;; p. BS GAAAAAGCC; R12634; 2; 9;; p. BS GAAAAACTT; R12635; 2; 9;; p. BS GAAAAAACA; R12636; 2; 9;; p. BS GAAAAAGGC; R12637; 2; 9;; p. BS GAAAAAAGC; R12638; 2; 9;; p. BS GAAAAAGCA; R12639; 2; 9;; p. BS GAAAAAGTG; R12640; 2; 9;; p. BS GAAAAAGCT; R12641; 2; 9;; p. BS GAAAAAGCC; R12642; 2; 9;; p. BS GAAAAACTC; R12643; 2; 9;; p. BS GAAAAAGTC; R12644; 2; 9;; p. BS GAAAAAGTA; R12645; 2; 9;; p. BS GAAAAAGCT; R12646; 2; 9;; p. BS GAAAAACTC; R12647; 2; 9;; p. BS GAAAAAGTG; R12648; 2; 9;; p. BS GAAAAACTG; R12649; 2; 9;; p. BS CAAAAAATA; R12650; 2; 9;; p. BS GAAAAAGGC; R12651; 2; 9;; p. BS GAAAAATAC; R12652; 2; 9;; p. XX CC 5 rounds of cyclic amplification and selection of targets (CASTing) XX RN [1]; RE0017839. RX PUBMED: 10669742. RA Nakamoto T., Yamagata T., Sakai R., Ogawa S., Honda H., Ueno H., Hirano N., Yazaki Y., Hirai H. RT CIZ, a zinc finger protein that interacts with p130(cas) and activates the expression of matrix metalloproteinases RL Mol. Cell. Biol. 20:1649-1658 (2000). XX // AC M00735 XX ID P$ZAP1_01 XX DT 21.08.2002 (created); sla. DT 02.09.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ZAP1 XX BF T03722; ZAP1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 1 0 1 50 T 02 1 0 0 51 T 03 1 0 51 0 G 04 50 1 1 0 A 05 2 50 0 0 C 06 1 47 2 2 C 07 4 5 40 3 G 08 33 12 4 3 A 09 2 8 37 5 G 10 2 28 7 15 Y XX BA 52 selected sequences XX BS TTGACCGAGT; R09161; 5; 10;; p. BS TTGACCGAGC; R09162; 5; 10;; p. BS TTGACCGAGT; R09163; 5; 10;; p. BS TTGACCGAGT; R09164; 5; 10;; p. BS TTGACCGAGC; R09165; 5; 10;; p. BS TTGACCGAGT; R09166; 5; 10;; p. BS TTGACCGAGT; R09167; 5; 10;; p. BS TTGACCGAGC; R09168; 5; 10;; p. BS TTGACCGAGT; R09169; 5; 10;; p. BS TTGACCTCAA; R09170; 5; 10;; p. BS TTGACCGATC; R09171; 14; 10;; p. BS TTGACCGAGC; R09172; 5; 10;; p. BS TTGACCGAGC; R09173; 7; 10;; p. BS TTGACCGAGT; R09174; 5; 10;; p. BS TTGACCGAGC; R09175; 5; 10;; p. BS TTGACCGAGC; R09177; 7; 10;; p. BS TTGACTATTG; R09178; 16; 10;; p. BS TTGACCGAGC; R09179; 5; 10;; p. BS TTGACCGGTC; R09180; 10; 10;; p. BS TTGACCGAGC; R09181; 5; 10;; p. BS TTGACCGAGC; R09182; 5; 10;; p. BS TTGACCGACT; R09183; 9; 10;; p. BS TTGACCGAGC; R09184; 5; 10;; p. BS TTGACCGTTG; R09185; 5; 10;; p. BS TTGACCGAGC; R09186; 5; 10;; p. BS TTGACCGAGC; R09187; 5; 10;; p. BS TTGACCGAGT; R09188; 5; 10;; p. BS TTGACCGAGC; R09189; 5; 10;; p. BS TTGACCGCGC; R09190; 5; 10;; p. BS TTGACCGAGG; R09191; 5; 10;; p. BS TTGACCCGCG; R09192; 5; 10;; p. BS TTGACCGAGT; R09193; 5; 10;; p. BS TTGACCGAGC; R09194; 5; 10;; p. BS TTGACCGAGT; R09195; 5; 10;; p. BS TTGACCCGCA; R09196; 8; 10;; p. BS TTGACCGAGC; R09197; 5; 10;; p. BS TTGACCTTGT; R09198; 9; 10;; p. BS TTGACCGAGT; R09199; 5; 10;; p. BS TTGACCGCGC; R09200; 5; 10;; p. BS TTGACCGAGC; R09201; 7; 10;; p. BS TTGACCGCCC; R09202; 12; 10;; p. BS TTGACCCCAC; R09203; 5; 10;; p. BS TTGACCGAGC; R09204; 5; 10;; p. BS TTGACCGCGG; R09205; 10; 10;; p. BS TTGACCGAGC; R09206; 5; 10;; p. BS AAAGATACCC; R09207; 5; 10;; p. BS TTGACCACGC; R09208; 5; 10;; p. BS TTGACGCCCG; R09209; 16; 10;; p. BS TTGACCCCCC; R09210; 7; 10;; p. BS TTGACATCGT; R09211; 5; 10;; p. BS TTGACCGGCG; R09212; 6; 10;; p. BS GTGCAGACTT; R09213; 5; 10;; p. XX CC sequences were selected by E.coli expressed ZAP1 from a pool of oligonucleotides with a core of 20 random nucleotides in four cycles of selection and amplification; alignment acc. to ref. [1], but for matrix only sequence from random part was taken XX RN [1]; RE0014988. RX PUBMED: 8972846. RA de Pater S., Greco V., Pham K., Memelink J., Kijne J. RT Characterization of a zinc-dependent transcriptional activator from Arabidopsis RL Nucleic Acids Res. 24:4624-4631 (1996). XX // AC M00736 XX ID V$E2F1DP1_01 XX DT 27.08.2002 (created); vma. DT 03.09.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA E2F-1:DP-1 XX DE E2F-1:DP-1 heterodimer XX BF T05204; E2F-1:DP-1; Species: human, Homo sapiens. XX P0 A C G T 01 4 3 1 17 T 02 2 1 0 22 T 03 0 0 0 25 T 04 0 17 8 0 C 05 0 14 11 0 S 06 0 25 0 0 C 07 3 0 22 0 G 08 0 19 6 0 C XX BA 25 sequences (for palindromic sites, 14% of the selected sites, each strand of the palindrome was used) [1] XX BS GTTCCCAG; R12780; 3; 8;; p. BS TTTCGCGC; R12781; 1; 8;; p. BS ATTCCCAG; R12782; 4; 8;; p. BS TTTCCCGC; R12783; 4; 8;; p. BS CTTCCCAG; R12784; 2; 8;; p. BS TTTCCCGC; R12785; 2; 8;; p. BS TTTCCCGC; R12786; 6; 8;; p. BS TTTGGCGG; R12787; 4; 8;; p. BS TCTCCCGC; R12788; 1; 8;; p. BS TTTGGCGC; R12789; 2; 8;; p. BS AATCGCGC; R12790; 1; 8;; p. BS ATTGGCGC; R12791; 5; 8;; p. BS TTTCGCGC; R12792; 5; 8;; p. BS TTTCCCGC; R12793; 5; 8;; p. BS TTTGGCGC; R12794; 6; 8;; p. BS AATCCCGC; R12795; 2; 8;; p. BS TTTGGCGG; R12796; 5; 8;; p. BS TTTGGCGC; R12797; 2; 8;; p. BS TTTGGCGC; R12798; 7; 8;; p. BS TTTCCCGC; R12799; 4; 8;; p. BS CTTCCCGC; R12800; 5; 8;; p. BS TTTCGCGG; R12801; 2; 8;; p. BS TTTGCCGC; R12802; 4; 8;; p. BS TTTCCCGC; R12803; 4; 8;; p. BS CTTCCCGC; R12804; 2; 8;; p. XX CC isolated from a pool of oligonucleotides containing a core of 16 random nucleotides in a binding site selection assay (>=4 rounds of selection and PCR amplification) [1] XX RN [1]; RE0014130. RX PUBMED: 9372931. RA Tao Y., Kassatly R. F., Cress W. D., Horowitz J. M. RT Subunit composition determines E2F DNA-binding site specificity RL Mol. Cell. Biol. 17:6994-7007 (1997). XX // AC M00737 XX ID V$E2F1DP2_01 XX DT 27.08.2002 (created); vma. DT 03.09.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA E2F-1:DP-2 XX DE E2F-1:DP-2 heterodimer XX BF T05205; E2F-1:DP-2; Species: human, Homo sapiens. XX P0 A C G T 01 2 0 1 21 T 02 2 0 0 22 T 03 0 0 0 24 T 04 0 15 9 0 S 05 0 15 9 0 S 06 0 23 1 0 C 07 0 1 23 0 G 08 0 20 4 0 C XX BA 24 sequences (for palindromic sites, 9% of the selected sites, each strand of the palindrome was used) [1] XX BS TTTCCCGC; R12805; 2; 8;; p. BS TTTGGCGC; R12806; 4; 8;; p. BS TTTCCCGG; R12807; 3; 8;; p. BS TATGGCGG; R12808; 3; 8;; p. BS TATCCCGC; R12809; 3; 8;; p. BS TTTCCCGC; R12810; 4; 8;; p. BS TTTCCCGC; R12811; 4; 8;; p. BS TTTGGCGC; R12812; 6; 8;; p. BS TTTCCCGC; R12813; 5; 8;; p. BS TTTCCCGC; R12814; 4; 8;; p. BS TTTGGCGC; R12815; 5; 8;; p. BS TTTCCCGC; R12816; 8; 8;; p. BS TTTGGCGG; R12817; 6; 8;; p. BS TTTCCCGC; R12818; 5; 8;; p. BS TTTGGCGC; R12819; 4; 8;; p. BS TTTGGCGC; R12820; 2; 8;; p. BS TTTGCGCG; R12821; 4; 8;; p. BS ATTCGCGC; R12822; 1; 8;; p. BS TTTCCCGC; R12823; 4; 8;; p. BS TTTCCCGC; R12824; 5; 8;; p. BS TTTCCCGC; R12825; 4; 8;; p. BS ATTCCCGC; R12826; 1; 8;; p. BS GTTCCCGC; R12827; 2; 8;; p. BS TTTGGCGC; R12828; 2; 8;; p. XX CC isolated from a pool of oligonucleotides containing a core of 16 random nucleotides in a binding site selection assay (>=4 rounds of selection and PCR amplification) [1] XX RN [1]; RE0014130. RX PUBMED: 9372931. RA Tao Y., Kassatly R. F., Cress W. D., Horowitz J. M. RT Subunit composition determines E2F DNA-binding site specificity RL Mol. Cell. Biol. 17:6994-7007 (1997). XX // AC M00738 XX ID V$E2F4DP1_01 XX DT 27.08.2002 (created); vma. DT 03.09.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA E2F-4:DP-1 XX DE E2F-4:DP-1 heterodimer XX BF T05206; E2F-4:DP-1; Species: human, Homo sapiens. XX P0 A C G T 01 5 0 0 36 T 02 1 0 0 40 T 03 0 0 0 41 T 04 0 22 19 0 S 05 0 5 36 0 G 06 0 41 0 0 C 07 0 0 41 0 G 08 0 39 2 0 C XX BA 41 sequences (for palindromic sites, 90% of the selected sites, each strand of the palindrome was used) [1] XX BS TTTGGCGC; R12829; 5; 8;; p. BS TTTCGCGC; R12830; 1; 8;; p. BS AATGGCGC; R12831; 1; 8;; p. BS TTTCGCGC; R12832; 4; 8;; p. BS TTTCGCGC; R12833; 1; 8;; p. BS TTTGGCGC; R12834; 5; 8;; p. BS TTTCCCGC; R12835; 3; 8;; p. BS TTTGGCGG; R12836; 3; 8;; p. BS TTTCGCGC; R12837; 1; 8;; p. BS TTTGGCGC; R12838; 5; 8;; p. BS TTTCGCGC; R12839; 1; 8;; p. BS TTTGGCGC; R12840; 5; 8;; p. BS TTTCGCGC; R12841; 1; 8;; p. BS TTTGGCGC; R12842; 5; 8;; p. BS TTTCGCGC; R12843; 1; 8;; p. BS TTTGGCGC; R12844; 5; 8;; p. BS TTTCGCGC; R12845; 1; 8;; p. BS TTTGGCGC; R12846; 5; 8;; p. BS TTTCGCGC; R12847; 1; 8;; p. BS TTTGGCGC; R12848; 5; 8;; p. BS TTTCGCGC; R12849; 1; 8;; p. BS TTTGGCGC; R12850; 5; 8;; p. BS TTTCGCGC; R12851; 1; 8;; p. BS TTTGGCGC; R12852; 5; 8;; p. BS TTTCGCGC; R12853; 1; 8;; p. BS TTTGGCGC; R12854; 5; 8;; p. BS ATTGGCGC; R12855; 5; 8;; p. BS TTTCGCGC; R12856; 1; 8;; p. BS ATTGGCGC; R12857; 5; 8;; p. BS TTTCGCGC; R12858; 1; 8;; p. BS TTTCCCGC; R12859; 3; 8;; p. BS TTTCGCGC; R12860; 1; 8;; p. BS TTTGGCGC; R12861; 5; 8;; p. BS ATTCCCGC; R12862; 1; 8;; p. BS TTTGGCGC; R12863; 3; 8;; p. BS ATTCCCGC; R12864; 2; 8;; p. BS TTTCCCGC; R12865; 3; 8;; p. BS TTTGGCGG; R12866; 3; 8;; p. BS TTTCGCGC; R12867; 1; 8;; p. BS TTTGGCGC; R12868; 5; 8;; p. BS TTTCGCGC; R12869; 2; 8;; p. XX CC isolated from a pool of oligonucleotides containing a core of 16 random nucleotides in a binding site selection assay (>=4 rounds of selection and PCR amplification) [1] XX RN [1]; RE0014130. RX PUBMED: 9372931. RA Tao Y., Kassatly R. F., Cress W. D., Horowitz J. M. RT Subunit composition determines E2F DNA-binding site specificity RL Mol. Cell. Biol. 17:6994-7007 (1997). XX // AC M00739 XX ID V$E2F4DP2_01 XX DT 27.08.2002 (created); vma. DT 03.09.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA E2F-4:DP-2 XX DE E2F-4:DP-2 heterodimer XX BF T05207; E2F-4:DP-2; Species: human, Homo sapiens. XX P0 A C G T 01 7 0 1 19 T 02 2 0 0 25 T 03 0 0 0 27 T 04 0 19 8 0 C 05 0 14 13 0 S 06 0 27 0 0 C 07 0 0 27 0 G 08 0 22 5 0 C XX BA 27 sequences (for palindromic sites, 30% of the selected sites, each strand of the palindrome was used) [1] XX BS TTTCCCGC; R12870; 1; 8;; p. BS TTTGGCGG; R12871; 4; 8;; p. BS GTTCCCGC; R12872; 2; 8;; p. BS TTTGGCGC; R12873; 5; 8;; p. BS ATTGGCGC; R12874; 1; 8;; p. BS ATTCGCGC; R12875; 1; 8;; p. BS TTTCCCGC; R12876; 5; 8;; p. BS AATGGCGG; R12877; 1; 8;; p. BS TTTCCCGC; R12878; 2; 8;; p. BS TTTCCCGC; R12879; 2; 8;; p. BS TTTGCCGC; R12880; 2; 8;; p. BS ATTCCCGC; R12881; 1; 8;; p. BS ATTGGCGG; R12882; 6; 8;; p. BS TTTCCCGC; R12883; 2; 8;; p. BS TTTCCCGC; R12884; 4; 8;; p. BS AATGGCGG; R12885; 2; 8;; p. BS TTTCGCGC; R12886; 2; 8;; p. BS TTTCGCGC; R12887; 5; 8;; p. BS ATTCCCGC; R12888; 1; 8;; p. BS TTTCCCGC; R12889; 3; 8;; p. BS TTTCGCGC; R12890; 1; 8;; p. BS TTTCCCGC; R12891; 1; 8;; p. BS TTTCGCGG; R12892; 5; 8;; p. BS TTTCCCGC; R12893; 4; 8;; p. BS TTTGGCGC; R12894; 2; 8;; p. BS TTTCGCGC; R12895; 3; 8;; p. BS TTTCCCGC; R12896; 2; 8;; p. XX CC isolated from a pool of oligonucleotides containing a core of 16 random nucleotides in a binding site selection assay (>=4 rounds of selection and PCR amplification) [1] XX RN [1]; RE0014130. RX PUBMED: 9372931. RA Tao Y., Kassatly R. F., Cress W. D., Horowitz J. M. RT Subunit composition determines E2F DNA-binding site specificity RL Mol. Cell. Biol. 17:6994-7007 (1997). XX // AC M00740 XX ID V$E2F1DP1RB_01 XX DT 27.08.2002 (created); vma. DT 03.09.2002 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Rb:E2F-1:DP-1 XX DE Rb:E2F-1:DP-1 trimeric complex XX BF T05208; pRb:E2F-1:DP-1; Species: human, Homo sapiens. XX P0 A C G T 01 11 0 0 41 T 02 1 0 0 51 T 03 0 0 0 52 T 04 0 26 26 0 S 05 0 6 46 0 G 06 0 52 0 0 C 07 0 0 52 0 G 08 0 46 6 0 C XX BA 52 sequences (for palindromic sites, i.e. all of the 26 selected sites, each strand was used) [1] XX BS TTTGGCGC; R12897; 4; 8;; p. BS TTTCGCGC; R12898; 2; 8;; p. BS TTTCGCGC; R12899; 1; 8;; p. BS TTTGGCGC; R12900; 2; 8;; p. BS TTTCGCGC; R12901; 2; 8;; p. BS TTTGGCGC; R12902; 5; 8;; p. BS TTTCGCGC; R12903; 1; 8;; p. BS ATTGGCGC; R12904; 5; 8;; p. BS TTTGGCGC; R12905; 5; 8;; p. BS TTTCGCGC; R12906; 1; 8;; p. BS TTTCGCGC; R12907; 1; 8;; p. BS ATTGGCGC; R12908; 5; 8;; p. BS TTTCCCGC; R12909; 3; 8;; p. BS TTTGGCGG; R12910; 3; 8;; p. BS TTTCCCGC; R12911; 3; 8;; p. BS TTTGGCGG; R12912; 3; 8;; p. BS TTTCGCGC; R12913; 1; 8;; p. BS ATTGGCGC; R12914; 4; 8;; p. BS TTTGGCGG; R12915; 3; 8;; p. BS TTTCCCGC; R12916; 3; 8;; p. BS TTTGGCGG; R12917; 3; 8;; p. BS TTTCCCGC; R12918; 3; 8;; p. BS ATTGGCGC; R12919; 5; 8;; p. BS TTTCGCGC; R12920; 1; 8;; p. BS TTTGGCGC; R12921; 5; 8;; p. BS TTTCGCGC; R12922; 1; 8;; p. BS TTTGGCGG; R12923; 3; 8;; p. BS TTTCCCGC; R12924; 3; 8;; p. BS TTTCCCGC; R12925; 3; 8;; p. BS AATGGCGG; R12926; 3; 8;; p. BS TTTCGCGC; R12927; 1; 8;; p. BS ATTGGCGC; R12928; 5; 8;; p. BS TTTCGCGC; R12929; 1; 8;; p. BS ATTGGCGC; R12930; 5; 8;; p. BS TTTGGCGC; R12931; 5; 8;; p. BS TTTCGCGC; R12932; 1; 8;; p. BS TTTGGCGC; R12933; 5; 8;; p. BS TTTCGCGC; R12934; 1; 8;; p. BS TTTCGCGC; R12935; 1; 8;; p. BS ATTGGCGC; R12936; 5; 8;; p. BS TTTCGCGC; R12937; 1; 8;; p. BS TTTGGCGC; R12938; 5; 8;; p. BS TTTCGCGC; R12939; 1; 8;; p. BS ATTGGCGC; R12940; 5; 8;; p. BS TTTGGCGC; R12941; 5; 8;; p. BS TTTCGCGC; R12942; 1; 8;; p. BS TTTCGCGC; R12943; 1; 8;; p. BS ATTGGCGC; R12944; 5; 8;; p. BS TTTCGCGC; R12945; 1; 8;; p. BS ATTGGCGC; R12946; 4; 8;; p. BS TTTGGCGC; R12947; 5; 8;; p. BS TTTCGCGC; R12948; 1; 8;; p. XX CC isolated from a pool of oligonucleotides containing a core of 16 random nucleotides in a binding site selection assay (>=4 rounds of selection and PCR amplification) [1] XX RN [1]; RE0014130. RX PUBMED: 9372931. RA Tao Y., Kassatly R. F., Cress W. D., Horowitz J. M. RT Subunit composition determines E2F DNA-binding site specificity RL Mol. Cell. Biol. 17:6994-7007 (1997). XX // AC M00742 XX ID V$HFH4_01 XX DT 29.08.2002 (created); mas. DT 04.12.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HFH-4 XX BF T02461; FOXF1; Species: mouse, Mus musculus. BF T02520; FOXJ1; Species: rat, Rattus norvegicus. BF T02460; FOXJ1; Species: mouse, Mus musculus. BF T02519; FOXJ1a; Species: human, Homo sapiens. BF T04221; FOXJ1b; Species: human, Homo sapiens. XX P0 A C G T 01 51 19 9 21 A 02 47 0 0 53 W 03 19 0 43 38 K 04 13 15 4 68 T 05 11 0 89 0 G 06 2 0 0 98 T 07 0 0 0 100 T 08 0 0 0 100 T 09 6 0 94 0 G 10 0 6 0 94 T 11 4 0 0 96 T 12 4 0 0 96 T 13 87 0 4 9 A XX BA 47 high affinity binding sites selected from random oligonucleotides XX CC 6 rounds of selection; relative frequencies stated XX RN [1]; RE0006971. RX PUBMED: 9096351. RA Lim L., Zhou H., Costa R. H. RT The winged helix transcription factor HFH-4 is expressed during choroid plexus epithelial development in the mouse embryo RL Proc. Natl. Acad. Sci. USA 94:3094-3099 (1997). XX // AC M00743 XX ID V$CETS168_Q6 XX DT 03.09.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA c-Ets-1 68 XX BF T00115; c-Ets-1 68; Species: chick, Gallus gallus. XX P0 A C G T 01 0 7 1 0 C 02 4 3 1 0 M 03 0 0 8 0 G 04 0 0 8 0 G 05 8 0 0 0 A 06 6 0 0 2 A 07 0 0 8 0 G 08 0 5 0 3 Y XX BA 8 compiled sequences XX BS GCGGAAGC; R01155; 6; 8;; n. BS CAGGAAGT; R01711; 5; 8;; n. BS CAGGAAGC; R02097; 2; 8;; p. BS CGGGAAGC; R02099; 5; 8;; p. BS CCGGAAGT; R02386; 6; 8;; p. BS CAGGATGT; R02414; 3; 8;; p. BS CCGGATGC; R02415; 32; 8;; n. BS CAGGAAGC; R04065; 2; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00744 XX ID V$POU1F1_Q6 XX DT 03.09.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA POU1F1 XX BF T00325; POU1F1; Species: human, Homo sapiens. BF T01172; POU1F1; Species: mouse, Mus musculus. BF T00691; POU1F1a; Species: rat, Rattus norvegicus. BF T01516; POU1F1b; Species: rat, Rattus norvegicus. XX P0 A C G T 01 13 0 2 2 A 02 0 0 0 17 T 03 0 0 17 0 G 04 9 3 2 3 A 05 14 0 0 3 A 06 0 0 0 17 T 07 13 0 1 3 A 08 12 0 0 5 A 09 9 0 2 6 W 10 5 2 0 10 T XX BA 17 compiled sequences XX BS ATGGATAATT; R00611; 11; 10;; n. BS ATGCATAAAT; R00612; 7; 10;; p. BS ATGAATAAAT; R00623; 1; 10;; p. BS ATGAATGAAT; R01263; 1; 10;; p. BS GTGAATAATA; R01264; 1; 10;; n. BS ATGTTTTAGA; R01265; 10; 10;; n. BS ATGCATTTTT; R01266; 5; 10;; p. BS TTGATTAATT; R01270; 1; 10;; n. BS ATGTTTAAAA; R01276; -5; 10;; p. BS ATGAATATAT; R01279; 10; 10;; n. BS ATGAATATAT; R01280; 1; 10;; n. BS ATGAATAAGA; R02787; 1; 10;; p. BS ATGAATTTTC; R03100; 1; 10;; p. BS TTGTATAAAC; R03101; 7; 10;; p. BS GTGGATAATT; R03190; 20; 10;; n. BS ATGCATAAAT; R03191; 1; 10;; p. BS ATGAATATAA; R03483; 11; 10;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00746 XX ID V$ELF1_Q6 XX DT 03.09.2002 (created); ela. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA ELF-1 XX BF T01113; ELF-1; Species: human, Homo sapiens. BF T05012; Elf-1; Species: mouse, Mus musculus. BF T05014; Elf-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 4 0 4 0 R 02 2 1 2 3 N 03 5 0 0 3 W 04 5 1 1 1 M 05 0 2 5 1 B 06 7 0 1 0 A 07 0 0 8 0 G 08 0 0 8 0 G 09 8 0 0 0 A 10 8 0 0 0 A 11 4 0 4 0 R 12 2 1 0 5 T XX BA 8 compiled sequences including 2 TRANSCompel sites XX BS AAAGGAGGAAAA; R00930; 3; 12;; p. BS GTTAGAGGAAAT; R04064; 18; 12;; n. BS AGAAGAGGAAAA; R04298; 12; 12;; p. BS GCACCAGGAAGT; R12017; 5; 12;; p. BS ATATCAGGAAGT; R12032; 13; 12;; n. BS GTTAGAGGAAAT; R12070; -8; 12;; n. BS AATATAGGAAGT; C00118, s00173; 1; 12;; n. BS GGAAGGGGAAGC; C00139, s00214; -5; 12;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00747 XX ID V$IRF1_Q6 XX DT 03.09.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA IRF1 XX BF T00423; IRF-1; Species: human, Homo sapiens. BF T00422; IRF-1; Species: mouse, Mus musculus. XX P0 A C G T 01 1 0 0 14 T 02 0 1 0 14 T 03 0 15 0 0 C 04 11 0 0 4 A 05 0 8 4 3 C 06 0 0 0 15 T 07 0 0 0 15 T XX BA 15 compiled sequences including 5 TRANSCompel sites XX BS TTCTGTT; R00915; 1; 7;; n. BS ATCACTT; R00917; 1; 7;; n. BS TTCACTT; R00919; 9; 7;; n. BS TTCAGTT; R00946; 14; 7;; n. BS TTCACTT; R00950; -6; 7;; p. BS TTCACTT; R01051; 10; 7;; p. BS TTCAGTT; R02897; 4; 7;; p. BS TCCATTT; R03126; 3; 7;; n. BS TTCTCTT; R05075; 4; 7;; n. BS TTCACTT; R08128; -7; 7;; p. BS TTCATTT; C00249, s00420; 4; 7;; p. BS TTCAGTT; C00300, s00523; 4; 7;; p. BS TTCTTTT; C00336, s00586; 4; 7;; p. BS TTCTCTT; C00337, s00588; 5; 7;; p. BS TTCACTT; C00339, s00591; 14; 7;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00749 XX ID V$SREBP1_Q6 XX DT 03.09.2002 (created); ela. DT 08.10.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA SREBP-1 XX BF T01559; SREBP-1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T01562; SREBP-1c; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 6 0 0 C 02 6 0 0 0 A 03 0 6 0 0 C 04 1 3 2 0 S 05 0 6 0 0 C 06 0 5 0 1 C 07 6 0 0 0 A XX BA 6 compiled sequences including 2 TRANSCompel sites XX BS CACGCCA; R04416; 10; 7;; p. BS CACACTA; R04417; 4; 7;; n. BS CACCCCA; R04430; 3; 7;; p. BS CACGCCA; R04432; 12; 7;; n. BS CACCCCA; C00204, s00338; 3; 7;; p. BS CACCCCA; C00205, s00340; 3; 7;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00750 XX ID V$HMGIY_Q6 XX DT 03.09.2002 (created); ela. DT 18.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA HMG IY XX BF T01851; HMG I; Species: human, Homo sapiens. BF T02368; HMG I; Species: human, Homo sapiens. BF T01980; HMG-Y; Species: human, Homo sapiens. BF T01852; HMG-Y; Species: mouse, Mus musculus. BF T01860; HMGI-C; Species: mouse, Mus musculus. XX P0 A C G T 01 1 0 12 0 G 02 0 2 8 3 G 03 13 0 0 0 A 04 13 0 0 0 A 05 11 0 0 2 A 06 5 0 2 6 W 07 0 3 1 8 T XX BA 13 compiled sequences including 10 TRANSCompel sites XX BS GCAAAAC; R04663; 6; 7;; p. BS GGAAATT; R04931; 23; 7;; n. BS GGAAAAT; R05081; 18; 7;; n. BS GGAAAGT; C00056, s00086; 16; 7;; p. BS GGAAATT; C00057, s00088; -2; 7;; p. BS GGAAAGT; C00058, s00090; -2; 7;; p. BS GGAAATC; C00059, s00092; -1; 7;; n. BS GGAAAAC; C00092, s00139; 1; 7;; p. BS GTAATTT; C00093, s00141; -4; 7;; p. BS GTAAATG; C00094, s00142; -1; 7;; p. BS ATAAAAN; C00146, s00228; 5; 7;; p. BS GCAAAAT; C00329, s00574; 3; 7;; p. BS GGAATTT; C00345, s00602; 1; 7;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00751 XX ID V$AML1_Q6 XX DT 03.09.2002 (created); ela. DT 08.10.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA AML1 XX BF T01067; AML1; Species: human, Homo sapiens. BF T02457; AML1; Species: gibbon ape, Hylobates lar. XX P0 A C G T 01 0 0 0 9 T 02 0 0 9 0 G 03 0 0 0 9 T 04 0 0 9 0 G 05 0 0 9 0 G 06 0 0 1 8 T XX BA 9 compiled sequences including 5 TRANSCompel sites XX BS TGTGGT; R04644; 12; 6;; n. BS TGTGGT; R05024; 6; 6;; p. BS TGTGGT; R05025; 4; 6;; p. BS TGTGGG; R05028; 1; 6;; p. BS TGTGGT; C00003, s00005; 1; 6;; p. BS TGTGGT; C00020, s00027; 1; 6;; p. BS TGTGGT; C00145, s00226; 1; 6;; p. BS TGTGGT; C00181, s00295; 1; 6;; p. BS TGTGGT; C00228, s00385; 1; 6;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00752 XX ID F$PDR3_Q2 XX DT 03.09.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA PDR3 XX BF T03525; PDR3; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 0 0 0 5 T 02 0 5 0 0 C 03 0 5 0 0 C 04 1 0 4 0 G 05 0 5 0 0 C 06 0 0 5 0 G 07 0 1 4 0 G 08 5 0 0 0 A XX BA 5 compiled sequences XX BS TCCGCGGA; R12386; 2; 8;; n. BS TCCGCGGA; R12392; 3; 8;; p. BS TCCGCGGA; R12393; 4; 8;; n. BS TCCACGGA; R12397; 5; 8;; n. BS TCCGCGCA; R12402; 1; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00753 XX ID F$RCS1_Q2 XX DT 03.09.2002 (created); ela. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA RCS1 XX BF T03538; RCS1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 6 0 0 0 A 02 3 2 1 0 M 03 0 1 0 5 T 04 1 0 5 0 G 05 0 6 0 0 C 06 6 0 0 0 A 07 0 6 0 0 C 08 0 6 0 0 C 09 0 6 0 0 C 10 5 0 1 0 A 11 2 0 2 2 D 12 0 0 2 4 T 13 1 0 0 5 T XX BA 6 compiled sequences XX BS AGTGCACCCATTT; R12404; 2; 13;; p. BS AATACACCCAATT; R12405; 2; 13;; p. BS AATGCACCCAGGT; R12406; 2; 13;; p. BS AATGCACCCGATT; R12407; 2; 13;; p. BS ACTGCACCCAGGA; R12408; 2; 13;; n. BS ACCGCACCCATTT; R12409; 2; 13;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00754 XX ID F$ZAP1_Q6 XX DT 03.09.2002 (created); ela. CO Copyright (C), Biobase GmbH. XX NA ZAP1 XX BF T03717; ZAP1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 7 0 0 0 A 02 0 7 0 0 C 03 0 7 0 0 C 04 0 6 0 1 C 05 0 1 0 6 T 06 4 2 0 1 A 07 7 0 0 0 A 08 7 0 0 0 A 09 0 0 7 0 G 10 0 0 7 0 G 11 0 0 0 7 T XX BA 7 compiled sequences XX BS ACCCTCAAGGT; R09723; 6; 11;; p. BS ACCTTCAAGGT; R09724; 6; 11;; n. BS ACCCCAAAGGT; R09725; 6; 11;; p. BS ACCCTAAAGGT; R09726; 6; 11;; p. BS ACCCTAAAGGT; R09727; 6; 11;; p. BS ACCCTAAAGGT; R09728; 6; 11;; p. BS ACCCTTAAGGT; R09740; 1; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00761 XX ID V$P53_DECAMER_Q2 XX DT 29.11.2002 (created); ela. DT 22.10.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA p53 decamer XX BF T06004; DeltaNp63alpha; Species: human, Homo sapiens. BF T06296; p53; Species: cattle, Bos taurus. BF T06298; p53; Species: monkey, Cercopithecus aethiops. BF T06299; p53; Species: hamster (Chinese hamster), Cricetulus griseus. BF T06307; p53; Species: cat, Felis silvestris catus. BF T06310; p53; Species: macaque, Macaca fascicularis. BF T06300; p53; Species: golden (Syrian) hamster, Mesocricetus auratus. BF T01806; p53; Species: mouse, Mus musculus. BF T06302; p53; Species: rabbit, Oryctolagus cuniculus. BF T06297; p53; Species: sheep, Ovis aries. BF T00671; p53; Species: human, Homo sapiens. BF T04997; p53; Species: rat, Rattus norvegicus. BF T06301; p53; Species: pig, Sus scrofa. BF T06306; p53; Species: dog, Canis familiaris (Canis canis). BF T06168; p63alpha; Species: mouse, Mus musculus. BF T06135; p63gamma; Species: human, Homo sapiens. BF T04931; p73alpha; Species: human, Homo sapiens. BF T06006; p73alpha; Species: monkey, Cercopithecus aethiops. BF T06137; p73beta; Species: human, Homo sapiens. XX P0 A C G T 01 25 3 16 2 R 02 14 0 32 0 G 03 25 0 21 0 R 04 2 39 4 1 C 05 32 2 4 8 A 06 23 2 2 19 W 07 3 0 43 0 G 08 9 15 5 17 N 09 2 28 9 7 C 10 5 22 5 14 Y XX BA 46 compiled sequences XX BS GAACATGTCC; R04373; 1; 10;; p. BS CAACATGTTG; R04373; 11; 10;; p. BS AAACATGTCC; R11271; 1; 10;; n. BS AAAATAGCTC; R11271; 21; 10;; n. BS AGACAAGCCT; R11272; 12; 10;; p. BS GGGCGTGGGC; R11272; 22; 10;; p. BS GAAGAAGACT; R11275; 1; 10;; p. BS AGACATGCCC; R11275; 11; 10;; n. BS GGGCATACCC; R11279; 7; 10;; p. BS GGGCTAGGGC; R11280; 8; 10;; p. BS AGGCAAGCTG; R11283; 1; 10;; p. BS AGGCTTGAGC; R11283; 16; 10;; n. BS GGAGGTGCCC; R11305; 1; 10;; p. BS AGGAGAGTGA; R11305; 11; 10;; p. BS AGGCAAGAGT; R11306; 1; 10;; n. BS AGGGAAGACC; R11306; 11; 10;; n. BS GGGCATGTAC; R11316; 1; 10;; p. BS AAACATGTCA; R11316; 11; 10;; p. BS AAACAAGCCA; R11388; 1; 10;; p. BS AAGCATGTTG; R11388; 12; 10;; n. BS GGGCAAGACC; R11389; 1; 10;; p. BS AGGCTTGGCA; R11389; 11; 10;; n. BS AAGCAAGCCT; R11430; 1; 10;; n. BS AGACATGTCC; R11430; 20; 10;; n. BS GGACAAACCT; R11446; 1; 10;; p. BS AGACACGTGC; R11446; 29; 10;; p. BS GGGCCAGACC; R11626; 1; 10;; p. BS AGACATGCCT; R11626; 11; 10;; p. BS AGACAAGTCC; R11629; 1; 10;; n. BS GAGCGCGTGC; R11629; 11; 10;; p. BS TGACAAGTGT; R11629; 21; 10;; n. BS TAGTAAGACT; R11629; 31; 10;; p. BS AGACATGTCT; R11645; 16; 10;; p. BS GAACATGTAG; R11645; 26; 10;; p. BS AGGCATGGTT; R11699; 10; 10;; n. BS GGGCAGATGC; R11699; 20; 10;; n. BS AGACAAGCCT; R11703; 1; 10;; p. BS AGACAAGTTC; R11703; 11; 10;; n. BS GAGCTAGACG; R11723; 1; 10;; p. BS GGGGCTGCCC; R11723; 14; 10;; n. BS GGGCAGGCCC; R11724; 3; 10;; p. BS AGACTAGGCA; R11724; 13; 10;; n. BS AGACATGTCT; R12753; 4; 10;; p. BS CGACAAGCCC; R12753; 27; 10;; p. BS CAACTAGACT; R12754; 4; 10;; p. BS AGACTAGCTT; R12754; 14; 10;; p. XX CC this matrix can be used to recognize matches that can be bound by p53 and by its relativies p63, p73 XX // AC M00762 XX ID V$DR1_Q3 XX DT 29.11.2002 (created); ela. DT 19.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA PPAR, HNF-4, COUP, RAR XX DE Direct repeat 1 XX BF T00147; COUP; Species: rat, Rattus norvegicus. BF T00148; COUP-TF1; Species: chick, Gallus gallus. BF T00149; COUP-TF1; Species: human, Homo sapiens. BF T00994; COUP-TF1; Species: mouse, Mus musculus. BF T00045; COUP-TF2; Species: human, Homo sapiens. BF T00012; HNF-4; Species: human, Homo sapiens. BF T02758; HNF-4; Species: human, Homo sapiens. BF T05017; HNF-4; Species: rat, Rattus norvegicus. BF T05294; HNF-4; Species: chipmunk, Tamias asiaticus (sibiricus). BF T03828; HNF-4alpha; Species: human, Homo sapiens. BF T01181; HNF-4alpha; Species: mouse, Mus musculus. BF T05287; HNF-4alpha; Species: mouse, Mus musculus. BF T00013; HNF-4alpha; Species: rat, Rattus norvegicus. BF T01182; HNF-4alpha; Species: rat, Rattus norvegicus. BF T05288; HNF-4alpha; Species: rat, Rattus norvegicus. BF T02430; HNF-4gamma; Species: human, Homo sapiens. BF T05256; PPAR-alpha:RXR-alpha; Species: rat, Rattus norvegicus. BF T05221; PPAR-alpha:RXR-alpha; Species: human, Homo sapiens. BF T05243; PPAR-alpha:RXR-alpha; Species: mouse, Mus musculus. BF T05235; PPAR-gamma:RXR-alpha; Species: rat, Rattus norvegicus. BF T05236; PPAR-gamma:RXR-alpha; Species: mouse, Mus musculus. BF T05246; PPAR-gamma2:RXR-alpha; Species: mouse, Mus musculus. BF T05273; RAR-alpha:RXR-alpha; Species: rat, Rattus norvegicus. XX P0 A C G T 01 11 1 12 6 R 02 4 0 26 1 G 03 2 4 22 3 G 04 7 6 6 12 N 05 2 23 2 4 C 06 27 2 0 2 A 07 21 3 4 3 A 08 21 1 8 1 A 09 0 2 26 3 G 10 2 2 20 7 G 11 4 4 2 21 T 12 1 25 4 1 C 13 21 4 0 6 A XX BA 31 compiled sequences XX BS GGGCTAAGTCCAC; R00114; 16; 13;; n. BS GGGTCAAAGGTCC; R00157; 1; 13;; n. BS TGGGCAAAGGTCA; R02657; 5; 13;; n. BS GGTTCAAAGGTCT; R03987; 8; 13;; n. BS GGCATAAGTCTGC; R04478; 16; 13;; n. BS AGCACAGGGGTCA; R04760; 1; 13;; n. BS GAGTCAAAGGTCA; R04770; 1; 13;; n. BS AAACCAAAGTTCA; R08885; 7; 13;; n. BS GGGTCAAAGGTGA; R11727; 7; 13;; p. BS GGCCAAAGGTCA; R12074; 1; 13; 13; n. BS AGGGGAGAGGTCA; R12750; 18; 13;; p. BS GGGATAAAGGTCT; R12983; 5; 13;; p. BS GGTCACCTGGCCC; R12984; 16; 13;; n. BS AGGGGAAAGGGCA; R12990; 7; 13;; n. BS TGCCCCAGTGACA; R12991; 10; 13;; n. BS GTTATAAAGGTTT; R12992; 7; 13;; p. BS AGGGCAGGGGTCA; R12993; 13; 13;; n. BS TGATCAAGGGTGA; R12995; 10; 13;; n. BS AAGTCACACTTCA; R12997; 7; 13;; n. BS TGGACTTAGTTCA; R12998; 7; 13;; p. BS TGGTCACCCAAGT; R12999; 2; 13;; p. BS AGGGCAAAGTACA; R13000; 8; 13;; p. BS GGGTCAAAGGGCT; R13001; 4; 13;; n. BS AGGTAATAGTTCA; R13010; 18; 13;; n. BS GGGCCAAAGGTCT; R13018; 10; 13;; n. BS AGGTCAGGGGACA; R13031; 6; 13;; p. BS GAGTCAAGGGTCA; R13048; 1; 13;; p. BS AGGACAAAGACCA; R13057; 8; 13;; n. BS CGGGCAAAGGCCA; R13065; 6; 13;; p. BS AGCTCAAAGTTCA; R13067; 18; 13;; p. BS TGGACTTAGTTCA; R13070; 4; 13;; p. XX CC several factors from the family of thyroid hormone receptor-like factors could bind to DR1 type of sites. XX // AC M00763 XX ID V$PPAR_DR1_Q2 XX DT 29.11.2002 (created); ela. DT 02.12.2002 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA PPAR direct repeat 1 XX BF T00694; PPAR-alpha; Species: mouse, Mus musculus. BF T00991; PPAR-alpha; Species: rat, Rattus norvegicus. BF T01352; PPAR-alpha; Species: clawed frog, Xenopus laevis. BF T02726; PPAR-alpha; Species: human, Homo sapiens. BF T05256; PPAR-alpha:RXR-alpha; Species: rat, Rattus norvegicus. BF T05221; PPAR-alpha:RXR-alpha; Species: human, Homo sapiens. BF T05243; PPAR-alpha:RXR-alpha; Species: mouse, Mus musculus. BF T01353; PPAR-beta; Species: clawed frog, Xenopus laevis. BF T01354; PPAR-gamma; Species: clawed frog, Xenopus laevis. BF T05235; PPAR-gamma:RXR-alpha; Species: rat, Rattus norvegicus. BF T05236; PPAR-gamma:RXR-alpha; Species: mouse, Mus musculus. BF T02736; PPAR-gamma1; Species: human, Homo sapiens. BF T02529; PPAR-gamma1; Species: mouse, Mus musculus. BF T04794; PPAR-gamma1; Species: cattle, Bos taurus. BF T03731; PPAR-gamma2; Species: human, Homo sapiens. BF T04780; PPAR-gamma2; Species: cattle, Bos taurus. BF T05246; PPAR-gamma2:RXR-alpha; Species: mouse, Mus musculus. XX P0 A C G T 01 5 0 2 11 T 02 1 3 14 0 G 03 13 3 0 2 A 04 5 13 0 0 C 05 1 16 1 0 C 06 1 3 0 14 T 07 2 3 2 11 T 08 1 0 1 16 T 09 2 2 13 1 G 10 7 4 4 3 N 11 2 14 0 2 C 12 2 14 1 1 C 13 3 8 1 6 Y XX BA 18 compiled sequences XX BS AGACCTTTGAACC; R03987; 8; 13;; p. BS TCACCTTTGACCC; R11727; 7; 13;; n. BS TGACCTCTCCCCT; R12750; 18; 13;; n. BS TGACCTTTGGCCG; R12982; 1; 13;; p. BS AGACCTTTATCCC; R12983; 5; 13;; n. BS GGTCACCTGGCCC; R12984; 16; 13;; n. BS TGCCCTTTCCCCT; R12990; 7; 13;; p. BS GCCCCAGTGACAC; R12991; 9; 13;; n. BS AAACCTTTATAAC; R12992; 7; 13;; n. BS TGACCCCTGCCCT; R12993; 13; 13;; p. BS TCACCCTTGATCA; R12995; 10; 13;; p. BS TGAAGTGTGACTT; R12997; 7; 13;; p. BS TGAACTAAGTCCA; R12998; 7; 13;; n. BS TGAACTTGGGTGA; R12999; 5; 13;; n. BS TGTACTTTGCCCT; R13000; 8; 13;; n. BS AGCCCTTTGACCC; R13001; 4; 13;; p. BS TGAACTATTACCT; R13010; 18; 13;; p. BS AGACCTTTGGCCC; R13018; 10; 13;; p. XX // AC M00764 XX ID V$HNF4_DR1_Q3 XX DT 29.11.2002 (created); ela. DT 29.11.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA HNF-4 direct repeat 1 XX BF T00012; HNF-4; Species: human, Homo sapiens. BF T02758; HNF-4; Species: human, Homo sapiens. BF T05017; HNF-4; Species: rat, Rattus norvegicus. BF T05294; HNF-4; Species: chipmunk, Tamias asiaticus (sibiricus). BF T03828; HNF-4alpha; Species: human, Homo sapiens. BF T01181; HNF-4alpha; Species: mouse, Mus musculus. BF T05287; HNF-4alpha; Species: mouse, Mus musculus. BF T00013; HNF-4alpha; Species: rat, Rattus norvegicus. BF T01182; HNF-4alpha; Species: rat, Rattus norvegicus. BF T05288; HNF-4alpha; Species: rat, Rattus norvegicus. BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. BF T02421; HNF-4alpha1; Species: human, Homo sapiens. BF T02424; HNF-4alpha1; Species: mouse, Mus musculus. BF T00373; HNF-4alpha2; Species: human, Homo sapiens. BF T02422; HNF-4alpha2; Species: rat, Rattus norvegicus. BF T02423; HNF-4alpha2; Species: mouse, Mus musculus. BF T02428; HNF-4alpha3; Species: human, Homo sapiens. BF T02425; HNF-4alpha4; Species: human, Homo sapiens. BF T02427; HNF-4alpha7; Species: mouse, Mus musculus. BF T05285; HNF-4alpha7; Species: human, Homo sapiens. BF T02430; HNF-4gamma; Species: human, Homo sapiens. XX P0 A C G T 01 1 0 1 11 T 02 0 1 12 0 G 03 9 0 3 1 A 04 4 7 1 1 M 05 1 12 0 0 C 06 0 3 0 10 T 07 1 1 0 11 T 08 2 0 0 11 T 09 1 0 12 0 G 10 4 3 3 3 N 11 0 10 2 1 C 12 0 10 0 3 C 13 2 5 1 4 N XX BA 13 compiled sequences XX BS TGGACTTAGCCCC; R00114; 17; 13;; p. BS TGACCTTTGCCCA; R02657; 5; 13;; p. BS GCAGACTTATGCC; R04478; 16; 13;; p. BS TGACCTTTGACTC; R04770; 1; 13;; p. BS TGAACTTTGGTTT; R08885; 7; 13;; p. BS TGACCTTTGGCC; R12074; 1; 13; 13; p. BS AGACCTTTGGCCC; R13018; 10; 13;; p. BS TGTCCCCTGACCT; R13031; 6; 13;; n. BS TGACCCTTGACTC; R13048; 1; 13;; n. BS TGGTCTTTGTCCT; R13057; 8; 13;; p. BS TGGCCTTTGCCCG; R13065; 6; 13;; n. BS TGAACTTTGAGCT; R13067; 18; 13;; n. BS TGAACTAAGTCCA; R13070; 4; 13;; n. XX // AC M00765 XX ID V$COUP_DR1_Q6 XX DT 29.11.2002 (created); ela. DT 29.11.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA COUP direct repeat 1 XX BF T00147; COUP; Species: rat, Rattus norvegicus. BF T00148; COUP-TF1; Species: chick, Gallus gallus. BF T00149; COUP-TF1; Species: human, Homo sapiens. BF T00994; COUP-TF1; Species: mouse, Mus musculus. BF T00045; COUP-TF2; Species: human, Homo sapiens. XX P0 A C G T 01 1 0 1 7 T 02 0 0 9 0 G 03 9 0 0 0 A 04 1 8 0 0 C 05 0 9 0 0 C 06 0 2 0 7 T 07 0 1 1 7 T 08 0 0 0 9 T 09 0 0 9 0 G 10 5 1 2 1 A 11 0 8 1 0 C 12 1 6 0 2 C 13 1 5 0 2 C XX BA 9 compiled sequences XX BS GGACCTTTGACCC; R00157; 1; 13;; p. BS TGACCTTTGACAC; R01193; 1; 13;; n. BS TGACCTTTGCCCA; R02657; 5; 13;; p. BS TGAACTGTGACCT; R03931; 16; 13;; n. BS TGACCCCTGTGCT; R04760; 1; 13;; p. BS TGACCTTTGACTC; R04770; 1; 13;; p. BS TGACCTTTGGCC; R12074; 1; 13; 13; p. BS AGACCTTTGGCCC; R13018; 10; 13;; p. BS TGACCCTTGACTC; R13048; 1; 13;; n. XX // AC M00766 XX ID V$LXR_DR4_Q3 XX DT 29.11.2002 (created); ela. DT 29.11.2002 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA LXR direct repeat 4 XX BF T05320; LXR-alpha:RXR-alpha; Species: mouse, Mus musculus. BF T05324; LXR-alpha:RXR-alpha; Species: human, Homo sapiens. BF T05357; LXR-alpha:RXR-alpha; Species: rat, Rattus norvegicus. BF T05325; LXR-beta:RXR-alpha; Species: human, Homo sapiens. XX P0 A C G T 01 0 1 0 7 T 02 0 0 8 0 G 03 6 2 0 0 A 04 1 7 0 0 C 05 0 8 0 0 C 06 0 1 5 2 G 07 1 3 3 1 N 08 2 3 1 2 N 09 5 1 1 1 A 10 1 1 5 1 G 11 0 0 0 8 T 12 5 0 3 0 R 13 8 0 0 0 A 14 1 7 0 0 C 15 0 8 0 0 C 16 0 8 0 0 C XX BA 8 compiled sequences XX BS TGACCTGGCCTGACCC; R09936; 1; 16;; n. BS TGAACTTATTTAAACC; R09957; 15; 16;; n. BS TGACCGCCAGTAACCC; R09971; 16; 16;; p. BS CGCCCGCTAGTAACCC; R09972; 18; 16;; p. BS TGCCCGACAATGACCC; R09975; 5; 16;; n. BS TGACCGCCAGTGACCC; R09980; 5; 16;; n. BS TGACCCGAGGTAACCC; R10034; 8; 16;; p. BS TGACCGGTAGTAACCC; R13134; 5; 16;; p. XX // AC M00767 XX ID V$FXR_IR1_Q6 XX DT 29.11.2002 (created); ela. DT 03.12.2002 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA FXR inverted repeat 1 XX BF T05174; FOR1; Species: clawed frog, Xenopus laevis. BF T05175; FOR2; Species: clawed frog, Xenopus laevis. BF T05313; FXR:RXR-alpha; Species: human, Homo sapiens. BF T05318; FXR:RXR-alpha; Species: rat, Rattus norvegicus. BF T05322; FXR:RXR-alpha; Species: mouse, Mus musculus. XX P0 A C G T 01 2 0 5 0 G 02 1 0 6 0 G 03 1 0 6 0 G 04 0 0 0 7 T 05 0 2 2 3 B 06 6 0 0 1 A 07 6 1 0 0 A 08 0 0 0 7 T 09 3 0 4 0 R 10 6 0 0 1 A 11 0 7 0 0 C 12 0 7 0 0 C 13 0 3 0 4 Y XX BA 7 compiled sequences XX BS GGGTGAATAACCT; R09992; 4; 13;; p. BS GGGTTAATGACCC; R10074; 4; 13;; p. BS AGGTGAATAACCT; R10075; 4; 13;; p. BS GGGTTAATAACCC; R10076; 4; 13;; p. BS GAGTTAATGACCT; R10077; 4; 13;; p. BS AGGTCTCTGACCT; R13128; 8; 13;; n. BS GGATCAATGTCCC; R13129; 8; 13;; n. XX // AC M00769 XX ID V$AML_Q6 XX DT 30.11.2002 (created); dtc. DT 08.06.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA AML XX BF T01067; AML1; Species: human, Homo sapiens. BF T02444; AML1; Species: rat, Rattus norvegicus. BF T02457; AML1; Species: gibbon ape, Hylobates lar. BF T02256; AML1a; Species: human, Homo sapiens. BF T02245; AML1b; Species: human, Homo sapiens. BF T02246; AML1c; Species: human, Homo sapiens. BF T02223; AML2; Species: human, Homo sapiens. BF T02281; AML3; Species: human, Homo sapiens. BF T02441; AML3; Species: rat, Rattus norvegicus. BF T03983; AML3a; Species: human, Homo sapiens. BF T03984; AML3b; Species: human, Homo sapiens. BF T00683; PEBP2; Species: mouse, Mus musculus. BF T02266; PEBP2alpha; Species: mouse, Mus musculus. BF T01063; PEBP2alphaA2; Species: mouse, Mus musculus. BF T02235; PEBP2alphaB1; Species: mouse, Mus musculus. BF T02241; PEBP2alphaB2; Species: mouse, Mus musculus. BF T01062; Runx2; Species: mouse, Mus musculus. XX P0 A C G T 01 8 4 3 2 N 02 5 4 4 4 N 03 3 3 9 2 G 04 0 4 6 7 K 05 4 6 1 6 N 06 0 1 0 16 T 07 0 0 17 0 G 08 0 3 0 14 T 09 0 0 17 0 G 10 0 0 17 0 G 11 0 1 1 15 T 12 1 4 2 10 T 13 8 0 1 8 W 14 4 5 6 2 N 15 3 9 2 3 C XX BA 17 compiled sequences including 11 TRANSCompel sites XX BS CCAGCTGCGGTCAGT; R01221; 5; 15;; n. BS TCCTTTGCGGTCATC; R02927; -1; 15;; n. BS GAGGATGTGGCTTCT; R04450; 28; 15;; n. BS AAGTTTGTGGTTTGC; R05025; -2; 15;; p. BS ACGTCTGTGGTTTTC; R05026; 1; 15;; p. BS GGGGTTGTGGGCACC; R05028; -5; 15;; p. BS ATGCATGTGGTTTCC; C00003, s00005; -5; 15;; p. BS CAGGATGTGGTTTGA; C00020, s00027; -5; 15;; p. BS AACTCTGTGGTTGCC; C00224, s00226; -5; 15;; p. BS ACTCTCGCGGTGACC; C00173, s00280; -3; 15;; n. BS ATATCTGTGGTTAAG; C00181, s00295; -5; 15;; p. BS ATATCTGTGGTAAGC; C00184, s00301; -5; 15;; p. BS CAGGATGTGGTTTGA; C00185, s00303; -6; 15;; p. BS TGGCCTGTGGTCTGG; C00196, s00324; -3; 15;; n. BS AGCCGTGTGGTGAAC; C00228, s00385; -5; 15;; p. BS CTGGTTGTGGTTAAT; C00229, s00387; -3; 15;; n. BS GGTTTTGTGGTTTAA; C00231, s00389; -3; 15;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00770 XX ID V$CEBP_Q3 XX DT 30.11.2002 (created); dtc. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA C/EBP XX BF T00961; ANF-2; Species: rat, Rattus norvegicus. BF T01388; C/EBP; Species: clawed frog, Xenopus laevis. BF T00104; C/EBPalpha; Species: mouse, Mus musculus. BF T00108; C/EBPalpha; Species: rat, Rattus norvegicus. BF T00105; C/EBPalpha; Species: human, Homo sapiens. BF T00107; C/EBPalpha; Species: chick, Gallus gallus. BF T02359; C/EBPalpha(p20); Species: mouse, Mus musculus. BF T02025; C/EBPalpha(p30); Species: chick, Gallus gallus. BF T02026; C/EBPalpha(p30); Species: mouse, Mus musculus. BF T02027; C/EBPalpha(p30); Species: rat, Rattus norvegicus. BF T02022; C/EBPbeta; Species: chick, Gallus gallus. BF T00459; C/EBPbeta(LAP); Species: rat, Rattus norvegicus. BF T01420; C/EBPbeta(p20); Species: rat, Rattus norvegicus. BF T02360; C/EBPbeta(p20); Species: mouse, Mus musculus. BF T02105; C/EBPbeta(p34); Species: rat, Rattus norvegicus. BF T00017; C/EBPbeta(p35); Species: mouse, Mus musculus. BF T05501; C/EBPbeta(p35); Species: mouse, Mus musculus. BF T00583; C/EBPdelta; Species: human, Homo sapiens. BF T01114; C/EBPdelta; Species: mouse, Mus musculus. BF T00109; C/EBPdelta; Species: rat, Rattus norvegicus. BF T00171; C/EBPepsilon; Species: rat, Rattus norvegicus. BF T04883; C/EBPepsilon; Species: human, Homo sapiens. BF T00216; C/EBPgamma; Species: mouse, Mus musculus. BF T04884; C/EBPgamma; Species: human, Homo sapiens. BF T02028; C/EBPgamma; Species: rat, Rattus norvegicus. BF T00581; NF-IL6-2; Species: human, Homo sapiens. XX P0 A C G T 01 36 24 36 33 N 02 45 21 33 30 N 03 43 27 37 22 N 04 27 18 10 74 T 05 12 13 35 69 K 06 33 13 29 54 N 07 24 10 52 43 N 08 0 0 129 0 G 09 22 58 17 32 N 10 111 11 2 5 A 11 125 1 3 0 A 12 39 28 24 37 N XX BA 129 compiled sequences including 30 TRANSCompel sites XX BS GGATGCTGTAAC; R00082; 5; 12;; n. BS GCATGAGGTGAC; R00083; -8; 12;; p. BS TGATTTTGTAAT; R00089; 3; 12;; p. BS AACCAATGAAAT; R00090; 1; 12;; p. BS GTTATTGGTTAA; R00093; -3; 12;; p. BS TGATTTTGTAAT; R00097; -2; 12;; p. BS CAGGTTGGGAAA; R00111; 13; 12;; n. BS GTGTGAAGCAAG; R00627; 3; 12;; p. BS CCATTTCGTAAT; R00629; 2; 12;; n. BS TTGATTGGAAAG; R00631; 5; 12;; p. BS ATGCAGGGTAAC; R00632; 14; 12;; n. BS TTGCTCGGCAAC; R00635; 4; 12;; p. BS TGCGTCAGCAAA; R00637; 8; 12;; n. BS ACGTGATGAAAT; R00698; 5; 12;; n. BS GCATTTTGTAAT; R00837; 2; 12;; p. BS GAATTGAGCAAT; R00847; 4; 12;; p. BS CTGATTGGTTAG; R01154; 9; 12;; n. BS ATCTGTGGTAAG; R01156; 14; 12;; p. BS CTCTGACGTAAG; R01217; -1; 12;; n. BS TGGTTTTGCAAG; R01235; 5; 12;; p. BS GGGTGTGGAAAG; R01408; 5; 12;; n. BS GTATTAGGACAT; R01462; 11; 12;; n. BS ATGTTGAGTAAG; R01463; 10; 12;; n. BS TATGATTGCAAA; R01581; 7; 12;; p. BS GCATTGTGCAAA; R01587; 7; 12;; p. BS GTGTTAGGTCAG; R01686; 6; 12;; p. BS ACGTTGTGTAAG; R01688; 3; 12;; p. BS TGCTGATGCAAA; R01689; 4; 12;; n. BS AATTTCTGAAAG; R01700; -2; 12;; n. BS TTTAATAGAAAT; R01839; 13; 12;; n. BS GGCTGAGGAAAT; R01841; 5; 12;; p. BS CAGAGTGGAAAA; R02042; 19; 12;; n. BS ATTATTGGCAAA; R02045; 5; 12;; p. BS TCAGTGAGCAAA; R02046; 5; 12;; n. BS AACACTTGGCAC; R02056; 10; 12;; n. BS TAATGGAGCAAT; R02458; 5; 12;; n. BS CACACTTGGAAT; R02459; 1; 12;; p. BS AAGCTTAGGAAA; R02468; 7; 12;; p. BS TTATGTTGCAAC; R02564; -4; 12;; p. BS GTATTTGGAAAT; R02583; -3; 12;; p. BS CTGAATTGCAAA; R02584; -3; 12;; p. BS AGATATTGCAAC; R02585; -4; 12;; p. BS CACATTGGCTAA; R02587; 7; 12;; n. BS AAATTTGGCAAG; R02588; -3; 12;; p. BS AGTGTTGGGAAA; R02589; -4; 12;; p. BS TCTCCATGCAAC; R02737; 7; 12;; n. BS CTCTTATGTAAG; R02739; 2; 12;; n. BS ACTCCCAGCAAT; R02740; -3; 12;; p. BS AGGACTGGGAGG; R02743; 21; 12;; p. BS AGATTAGGTTAA; R02744; 4; 12;; p. BS GCACCATGCAAC; R02745; 5; 12;; p. BS TGATTAGGCAGA; R02746; -4; 12;; n. BS TGGTGAGGTAAT; R02895; -3; 12;; p. BS TCCTGCAGTAAG; R03068; 3; 12;; p. BS CACTGGGGCAAG; R03069; 7; 12;; n. BS AGAATTTGGAAG; R03130; -4; 12;; p. BS CAGTCTGGGAAT; R03131; 18; 12;; p. BS TCGTGGCGCAAC; R03135; 10; 12;; n. BS CGCATCTGCAAT; R03139; 9; 12;; n. BS AACTGTGGCAAC; R03141; 13; 12;; n. BS AACTGTGGCAAC; R03142; -3; 12;; n. BS GAGTTTAGCAAA; R03143; 6; 12;; n. BS GAGATTGGTAAA; R03147; 5; 12;; n. BS TTTATTTGCAAT; R03148; 3; 12;; p. BS GACATGGGGAAA; R03149; 7; 12;; n. BS CATCACTGCAAA; R03152; 3; 12;; n. BS AAATGACGTAAC; R03153; 2; 12;; n. BS TATCTGTGCAAT; R03234; 28; 12;; p. BS GAAATTGGAAAA; R03237; -4; 12;; p. BS TCATAAAGAAAT; R03239; 3; 12;; n. BS TACCTGTGCAAC; R03242; 29; 12;; p. BS GAAATTGGAAAA; R03246; -4; 12;; p. BS TACCTATGCAAT; R03250; 33; 12;; p. BS TTTCTTGGGAAA; R03322; 6; 12;; p. BS ATTTTGTGCAAG; R03413; -3; 12;; p. BS AAATGACGCAAT; R04044; 2; 12;; n. BS TGAATGGGTTAA; R04476; 2; 12;; p. BS TCTGTGTGCACA; R04485; -2; 12;; p. BS CACATGCGCCAG; R04486; -2; 12;; p. BS TAATTGGGTAAA; R04487; -2; 12;; p. BS TTCTCGAGGAAT; R04491; 19; 12;; p. BS GAGTTGGGCAAT; R04494; 4; 12;; p. BS GGGAATTGGAAG; R04501; -3; 12;; p. BS CAGTTGTGTAAC; R04503; 13; 12;; n. BS ATATTAAGCAAT; R04505; 1; 12;; p. BS GTTATTGGACAA; R04507; -3; 12;; p. BS CAATTCAGAAGC; R04511; -1; 12;; n. BS TAAACAAGGCAG; R04512; -4; 12;; n. BS GAGCTTGGCAAC; R04515; 8; 12;; n. BS GAGCTTGGCAAC; R04516; 21; 12;; n. BS GCTCGAGGGAAA; R08084; 49; 12;; n. BS GGCTTACGCAAT; R08091; 6; 12;; p. BS GCGGAAAGAAAC; R08092; -8; 12;; p. BS ATGTGCTGACAT; R08112; 15; 12;; n. BS GAGAGCTGCAAT; R08113; 15; 12;; n. BS AGTCACGGTCAA; R08116; -8; 12;; p. BS GGATTGTGCAAA; R08135; 5; 12;; p. BS TCATTGGGTAAC; R08136; -3; 12;; p. BS AAATTTGGTAAC; R08878; 5; 12;; n. BS TTGTTTGGTCAA; C00070, s00107; 4; 12;; n. BS AGTGCTGGTGAG; C00078, s00117; -6; 12;; p. BS CATTTAAGCAAC; C00110, s00143; 1; 12;; n. BS ATCAGTTGCAAA; C00098, s00147; -2; 12;; p. BS CAGTTGTGTAAC; C00100, s00150; -3; 12;; n. BS AGATGGCGCAAT; C00104, s00155; 1; 12;; p. BS CAATGAGGCAAT; C00111, s00165; -2; 12;; p. BS CGATGTGGCAA; C00112, s00167; -1; 12;; n. BS GTCTGAAGCAAA; C00115, s00170; 2; 12;; n. BS ACCTTTTGCAAT; C00122, s00181; 2; 12;; p. BS GGATGAAGAAAC; C00148, s00231; 4; 12;; p. BS AGATTGTGCAAT; C00152, s00239; 3; 12;; n. BS GGATTATGCAAG; C00153, s00242; -2; 12;; p. BS GTTTTGTGAAAT; C00154, s00244; -1; 12;; n. BS AGCTAAAGCAAT; C00155, s00245; 1; 12;; n. BS CTGGTTGGGAAA; C00172, s00277; 4; 12;; n. BS GGATGGGGCAAT; C00246, s00285; -3; 12;; p. BS ACCAGCGGAAAA; C00178, s00289; 24; 12;; n. BS AGGATTGGGAAA; C00186, s00304; -4; 12;; n. BS CAATGTTGCAAC; C00189, s00311; -2; 12;; p. BS ATATTAGGACAT; C00270, s00458; -3; 12;; p. BS GAGTCTTGCAAA; C00287, s00495; 4; 12;; p. BS CCTCTTAGGAAA; C00295, s00513; -2; 12;; p. BS ACTGCTGGAAAT; C00296, s00515; -4; 12;; p. BS TGCCTTAGTCAA; C00316, s00553; -4; 12;; p. BS CGATTGAGCAAC; C00317, s00554; -1; 12;; n. BS TAGTGGCGCAAA; C00321, s00560; -2; 12;; p. BS GAATGTGGTAAC; C00322, s00562; 1; 12;; n. BS GAGTGATGTAAC; C00330, s00575; -2; 12;; p. BS TGGTCACGCAAG; C00360, s00625; -1; 12;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00771 XX ID V$ETS_Q4 XX DT 30.11.2002 (created); dtc. DT 18.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA ETS XX BF T00112; c-Ets-1; Species: human, Homo sapiens. BF T00111; c-Ets-1; Species: mouse, Mus musculus. BF T05015; c-Ets-1; Species: rat, Rattus norvegicus. BF T00114; c-Ets-1 54; Species: chick, Gallus gallus. BF T00115; c-Ets-1 68; Species: chick, Gallus gallus. BF T00113; c-Ets-2; Species: human, Homo sapiens. BF T01397; c-Ets-2; Species: mouse, Mus musculus. BF T00116; c-Ets-2 58-64; Species: chick, Gallus gallus. BF T05012; Elf-1; Species: mouse, Mus musculus. BF T05014; Elf-1; Species: rat, Rattus norvegicus. BF T05013; Elk-1; Species: mouse, Mus musculus. BF T04885; ERF; Species: human, Homo sapiens. BF T00265; Erg-1; Species: human, Homo sapiens. BF T01400; Ets-1 deltaVII; Species: human, Homo sapiens. BF T02066; Fli-1; Species: human, Homo sapiens. BF T01408; Fli-1; Species: mouse, Mus musculus. BF T05039; NERF; Species: human, Homo sapiens. BF T05021; NERF-1a; Species: human, Homo sapiens. BF T05022; NERF-1b; Species: human, Homo sapiens. BF T05023; NERF-2; Species: human, Homo sapiens. BF T00737; SAP-1a; Species: human, Homo sapiens. BF T04886; Tel-2b; Species: human, Homo sapiens. XX P0 A C G T 01 24 10 3 11 A 02 15 11 12 10 N 03 5 20 10 13 N 04 6 25 7 10 C 05 26 4 13 5 A 06 2 34 2 10 C 07 12 0 0 36 T 08 0 0 0 48 T 09 0 48 0 0 C 10 0 48 0 0 C 11 1 3 6 38 T 12 1 14 29 4 G XX BA 48 compiled sequences including 34 TRANSCompel sites XX BS AAGCAGTTCCTG; R01156; 23; 12;; p. BS AGCCACATCCTC; R02098; 30; 12;; p. BS CACCGCATCCGG; R02415; 28; 12;; p. BS CCTCACTTCCTG; R03475; 9; 12;; n. BS TGTTCTTTCCTT; R04338; 1; 12;; n. BS TAAATTTTCCTT; R04339; -6; 12;; p. BS TAGGCCTTCCCG; R04343; -1; 12;; n. BS GCTCACATCCTC; R08269; 6; 12;; p. BS AGCTACTTCCTG; R12017; -9; 12;; n. BS TTTCACTTCCTG; R12019; 4; 12;; n. BS AGCAACTTCCTG; R12032; 9; 12;; p. BS AATCATTTCCTC; R12070; 13; 12;; n. BS ACGCGCTTCCTG; R12086; 4; 12;; p. BS TTTCCCTTCCCC; R12090; 12; 12;; n. BS ACCCATTTCCTC; C00007, s00011; -4; 12;; p. BS AACCACATCCTG; C00020, s00026; 1; 12;; n. BS TTGGGCTTCCTG; C00021, s00028; 2; 12;; n. BS ATGGACATCCTG; C00304, s00030; 1; 12;; n. BS TGTCATTTCCTT; C00079, s00119; -5; 12;; p. BS AGTCACTTCCTG; C00082, s00124; -1; 12;; n. BS TATAACATCCTC; C00083, s00126; 1; 12;; n. BS CTTCATTTCCTC; C00084, s00128; -1; 12;; n. BS AACCACTTCCGG; C00127, s00191; 2; 12;; n. BS CCAGGCTTCCTG; C00134, s00204; 1; 12;; n. BS CAGCGCATCCCG; C00135, s00206; -2; 12;; n. BS AGGTCATTCCTG; C00136, s00207; 2; 12;; n. BS TATGTCTTCCTG; C00137, s00209; -6; 12;; p. BS ACCTGCTTCCTG; C00170, s00274; 1; 12;; n. BS ACCTGCTTCCTG; C00173, s00279; 1; 12;; n. BS AGCCACATCCTC; C00174, s00282; -3; 12;; p. BS ACAGATATCCTG; C00184, s00300; 1; 12;; n. BS AACCACATCCTG; C00185, s00302; 1; 12;; n. BS CTACACTTCCTC; C00231, s00390; 1; 12;; n. BS AGCTGCATCCGG; C00233, s00394; -5; 12;; p. BS AGCCACATCCGC; C00238, s00403; 2; 12;; n. BS ACCCACTTCCTG; C00240, s00407; 1; 12;; n. BS AATCATTTCCTC; C00262, s00444; -5; 12;; p. BS CTCAGCTTCCTC; C00263, s00445; -1; 12;; n. BS CTCATCTTCCTG; C00264, s00448; -4; 12;; p. BS AAATGCTTCCTG; C00265, s00449; 2; 12;; n. BS AAGCATTTCCTG; C00265, s00450; -5; 12;; p. BS TACCGCTTCCTC; C00266, s00451; -6; 12;; p. BS GGTTGCTTCCGG; C00271, s00459; -2; 12;; n. BS GCCCACTTCCTT; C00274, s00466; 1; 12;; n. BS CGCGACTTCCTC; C00275, s00468; -4; 12;; p. BS TTCTGTTTCCTG; C00276, s00470; -6; 12;; p. BS ACGTTATTCCAA; C00276, s00471; -2; 12;; n. BS CTGATGTTCCGG; C00359, s00623; -6; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00772 XX ID V$IRF_Q6 XX DT 30.11.2002 (created); dtc. DT 18.08.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA IRF XX BF T00423; IRF-1; Species: human, Homo sapiens. BF T00422; IRF-1; Species: mouse, Mus musculus. BF T00424; IRF-1; Species: rat, Rattus norvegicus. BF T05092; IRF-1; Species: chick, Gallus gallus. BF T05154; IRF-10; Species: chick, Gallus gallus. BF T01491; IRF-2; Species: human, Homo sapiens. BF T00425; IRF-2; Species: mouse, Mus musculus. BF T05091; IRF-2; Species: chick, Gallus gallus. BF T01571; IRF-3; Species: chick, Gallus gallus. BF T04673; IRF-3; Species: human, Homo sapiens. BF T05128; IRF-3; Species: mouse, Mus musculus. BF T01412; IRF-4; Species: mouse, Mus musculus. BF T01572; IRF-4; Species: mouse, Mus musculus. BF T04929; IRF-4; Species: human, Homo sapiens. BF T05103; IRF-5; Species: mouse, Mus musculus. BF T05104; IRF-5; Species: human, Homo sapiens. BF T05117; IRF-6; Species: clawed frog, Xenopus laevis. BF T05118; IRF-6; Species: human, Homo sapiens. BF T05119; IRF-6; Species: mouse, Mus musculus. BF T05144; IRF-7; Species: mouse, Mus musculus. BF T04674; IRF-7A; Species: human, Homo sapiens. BF T05106; IRF-7H; Species: human, Homo sapiens. BF T00402; IRF-8; Species: mouse, Mus musculus. BF T02038; IRF-8; Species: human, Homo sapiens. BF T02037; IRF-8; Species: chick, Gallus gallus. XX P0 A C G T 01 0 8 7 11 B 02 5 7 4 10 N 03 3 13 4 6 C 04 13 3 7 3 R 05 1 9 12 4 S 06 1 0 1 24 T 07 1 0 1 24 T 08 0 0 0 26 T 09 0 26 0 0 C 10 16 3 2 5 A 11 3 9 6 8 N 12 0 0 1 25 T 13 0 0 0 26 T 14 2 9 1 14 Y 15 1 13 1 11 Y XX BA 26 compiled sequences including 11 TRANSCompel sites XX BS TGCAGTTTCATTTTC; R00002; 4; 15;; n. BS GTTGGTTTCGTTTCC; R00163; 4; 15;; n. BS TGCAGTTTCTGTTTC; R00423; 1; 15;; p. BS GCCACTTTCCATTTC; R00915; 5; 15;; n. BS GGGTGGATCACTTGA; R00917; -2; 15;; n. BS TTCAGTTTCGGTTTC; R00946; 6; 15;; n. BS TCTAGTTTCACTTTC; R00950; 1; 15;; p. BS CACAGTTTCACTTCT; R01061; 3; 15;; p. BS TTCAGTTTCATGTTC; R01094; 4; 15;; n. BS GGAATTTTCCATTAT; R08128; 2; 15;; n. BS TTGGCTTTCCTTTAT; R12443; 9; 15;; n. BS TATTCTTTCAGTTTT; R12726; 3; 15;; p. BS CTTGTTTTCTGTTTT; R12764; 2; 15;; n. BS TCCCCTTTCATTTTT; R12766; -5; 15;; p. BS GACCCAGTCACTTTG; R13011; -2; 15;; n. BS CTGAGTTTCACTTCT; C00060, s00094; -3; 15;; p. BS CCCACTTTCACTTCT; C00061, s00095; 2; 15;; n. BS GCTGTTTTCATTTCC; C00249, s00420; -3; 15;; p. BS GCCGCTTTCACTTCC; C00260, s00438; -4; 15;; p. BS TTTGGTTTCAGTTTT; C00300, s00523; -3; 15;; p. BS CAGACTTTCTATTTC; C00332, s00581; -3; 15;; p. BS CTCCCTTTCAGTTTT; C00333, s00582; 2; 15;; n. BS TCAGTTTTCTTTTCC; C00334, s00583; -3; 15;; p. BS TTCAGTTTCTTTTCC; C00336, s00586; -3; 15;; p. BS CAATATTTCACTTTC; C00339, s00591; -3; 15;; p. BS CTCAGTTTCACTTCT; C00340, s00593; -2; 15;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00773 XX ID V$MYB_Q3 XX DT 30.11.2002 (created); dtc. DT 15.09.2003 (updated); ela. CO Copyright (C), Biobase GmbH. XX NA MYB XX BF T00137; c-Myb; Species: human, Homo sapiens. BF T00138; c-Myb; Species: mouse, Mus musculus. BF T00136; c-Myb; Species: rat, Rattus norvegicus. BF T00139; c-Myb; Species: chick, Gallus gallus. XX P0 A C G T 01 9 5 6 5 N 02 4 8 9 4 N 03 6 5 7 7 N 04 2 3 15 5 G 05 5 7 7 6 N 06 1 18 3 3 C 07 14 7 3 1 A 08 0 0 25 0 G 09 0 0 0 25 T 10 0 0 1 24 T 11 8 5 9 3 N XX BA 25 compiled sequences including 6 TRANSCompel sites XX BS TGTGTCAGTTA; R01849; 7; 11;; n. BS AGTACCAGTTG; R02392; 6; 11;; p. BS GGAGACAGTTC; R03999; 7; 11;; p. BS CACGCCGGTTG; R04000; 4; 11;; p. BS GTTTTCTGTTC; R04001; 11; 11;; p. BS CGACTCCGTTG; R04002; 4; 11;; p. BS ATGGTGAGTGG; R04174; -1; 11;; p. BS ACTTCCAGTTC; R04175; 14; 11;; p. BS ACCGGCAGTTA; R04176; 1; 11;; p. BS ACTCCAAGTTC; R04177; 15; 11;; n. BS AAAAAGCGTTT; R04178; 4; 11;; p. BS GCGGGCAGTTG; R04179; 6; 11;; n. BS CAGGGTCGTTA; R04180; 17; 11;; p. BS TGCGCCCGTTT; R04181; 10; 11;; n. BS CCGCCCAGTTG; R04182; -2; 11;; p. BS TCAGGCAGTTG; R04183; 5; 11;; n. BS GGCGCCAGTTC; R04184; 4; 11;; p. BS GTGTATAGTTA; R04340; 1; 11;; n. BS ACTTAGGGTTA; R04341; 1; 11;; n. BS CGGGTCCGTTA; C00135, s00205; -5; 11;; p. BS AGAGGCCGTTG; C00246, s00286; 6; 11;; n. BS TCCTGTCGTTA; C00181, s00294; 1; 11;; n. BS ATGGTCAGTTG; C00229, s00386; 1; 11;; n. BS GAAGACAGTTA; C00230, s00388; 1; 11;; n. BS TGTGGCGGTTT; C00240, s00408; -5; 11;; p. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00774 XX ID V$NFKB_Q6_01_M00774 XX DT 30.11.2002 (created); dtc. DT 07.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA NF-kappaB XX BF T00587; NF-kappaB; Species: rat, Rattus norvegicus. BF T00588; NF-kappaB; Species: mouse, Mus musculus. BF T00590; NF-kappaB; Species: human, Homo sapiens. BF T05148; NF-kappaB; Species: rabbit, Oryctolagus cuniculus. BF T00591; NF-kappaB(-like); Species: human, Homo sapiens. BF T00592; NF-kappaB(-like); Species: mouse, Mus musculus. BF T01926; NF-kappaB1 precursor; Species: rat, Rattus norvegicus. BF T01930; NF-kappaB2 (p49); Species: human, Homo sapiens. BF T01927; NF-kappaB2 precursor; Species: human, Homo sapiens. BF T00606; NF-TNF; Species: mouse, Mus musculus. BF T01224; NF-TNF; Species: rat, Rattus norvegicus. BF T01929; p100; Species: chick, Gallus gallus. BF T01925; p105; Species: human, Homo sapiens. BF T01924; p105; Species: mouse, Mus musculus. BF T00593; p50; Species: human, Homo sapiens. BF T00389; p50; Species: rat, Rattus norvegicus. BF T01923; p50; Species: mouse, Mus musculus. BF T00394; p52; Species: human, Homo sapiens. BF T00594; RelA; Species: human, Homo sapiens. BF T00595; RelA; Species: mouse, Mus musculus. BF T05016; RelA; Species: rat, Rattus norvegicus. XX P0 A C G T 01 12 15 27 21 N 02 14 19 22 20 N 03 19 24 16 16 N 04 17 17 21 20 N 05 8 9 35 23 K 06 3 2 68 2 G 07 4 1 67 3 G 08 46 0 27 2 R 09 62 3 9 1 A 10 71 2 2 0 A 11 16 11 22 26 N 12 4 15 2 54 T 13 3 68 0 4 C 14 1 72 0 2 C 15 10 58 1 6 C 16 17 21 19 18 N XX BA 75 compiled sequences including 51 TRANSCompel sites XX BS AGGTTGGGAAATCCCA; R00112; 8; 16;; n. BS GGCCAGGAGATTCCAC; R00605; -5; 16;; p. BS GACTTGGAAATCCCCG; R00806; -2; 16;; p. BS CTCTCGGAAAGTCCCC; R00877; 1; 16;; n. BS TGTAGGTGAAATCCCT; R00933; 1; 16;; n. BS GAGAGGGAGATTCCCC; R00940; 1; 16;; n. BS GGGTGGGGAAGCCCAG; R01056; -3; 16;; p. BS CCTCTGGGAAGTCCCG; R01071; -1; 16;; n. BS GGTGTGGAAAGTCCCC; R01406; 2; 16;; n. BS AGGAGGGAAAGCCCCC; R01448; 1; 16;; n. BS GGTTGGGGAAAACCCG; R01607; 6; 16;; n. BS TCATGGGAAAATCCCA; R01634; 6; 16;; n. BS GGGCCGGGGAATCCCG; R01744; 1; 16;; p. BS ACAAGGGGAAGTCCCT; R02464; -3; 16;; p. BS TACCAGGAAAGTCCCG; R02913; -2; 16;; p. BS TCTCTGGGAAGTACCA; R02914; 6; 16;; n. BS GCCCGGGGAAGCCCCC; R02923; 2; 16;; n. BS TTTAGGTGAAATCCCT; R02951; 8; 16;; n. BS CTGTGGGGACGTCCCC; R02980; -4; 16;; p. BS GCCAGGGAAATTCCCG; R03341; 3; 16;; n. BS CTAGGCTAAAGTCCCA; R04128; 8; 16;; p. BS TTAATGAAAAGTCCCA; R04475; 10; 16;; n. BS GTGTCGGGAATTCCCC; R08469; -5; 16;; p. BS ATTTTGGAAACTCCCC; R12279; 9; 16;; p. BS CCTGGGGAAAGTCCCA; C00346, s00082; -1; 16;; n. BS TCCCTGGAAAGTCCCC; C00257, s00083; 1; 16;; n. BS AAGTGGGAAATTCCTC; C00061, s00087; -4; 16;; p. BS TCCCGGGAAAGTTTTT; C00306, s00089; -4; 16;; p. BS TCCCGGGAAAGTTTTT; C00058, s00089; -4; 16;; p. BS AAAGAGGAAATCCCCA; C00059, s00091; -1; 16;; n. BS TGGGGAATCCCCAACG; C00060, s00093; -3; 16;; n. BS AAAGAGGAAATCCCCA; C00062, s00096; -1; 16;; n. BS TCAGAGGAAATTCCAC; C00098, s00148; -2; 16;; n. BS CCTGGGGAAAGTCCCT; C00100, s00151; -1; 16;; n. BS ATCGTGGATATTCCCG; C00102, s00153; -5; 16;; p. BS GCCAGGGAAATTCCCG; C00140, s00215; -1; 16;; n. BS TGCCTGGAAAGCCCCT; C00148, s00232; -1; 16;; n. BS TCATGGGAAAATCCCA; C00152, s00240; 1; 16;; n. BS TTTCTGGAAATGCCTA; C00338, s00241; -1; 16;; p. BS GGATCAGAGATTCCAC; C00154, s00243; -4; 16;; p. BS AGCTTGGAAATTCCGG; C00155, s00246; -5; 16;; p. BS GGCGGGGGAACTACCT; C00156, s00247; -1; 16;; n. BS TTTAAAGAAATTCCAA; C00165, s00264; -3; 16;; p. BS GCCTTGGAAGTTCCCT; C00311, s00299; -1; 16;; n. BS CTTCTTAAAATTCCCC; C00188, s00308; -6; 16;; p. BS CTTCTTGAAATTCCCC; C00189, s00310; -6; 16;; p. BS GGGCTGGGGAATCCCG; C00192, s00317; -5; 16;; p. BS CCAGCGGAAAGTCCCT; C00235, s00398; -1; 16;; n. BS GGAGGGGAAAACCCCA; C00302, s00529; -2; 16;; n. BS TTAGCCAGAATTCCCA; C00305, s00534; -1; 16;; n. BS TAACTGGAAAGTCCTT; C00308, s00537; -2; 16;; p. BS GTCTGGGGAATTCCAG; C00309, s00539; -4; 16;; p. BS GGGGTGGGAACCCCCG; C00311, s00544; -1; 16;; n. BS TTGGTGGAGAAACCCA; C00318, s00556; -1; 16;; n. BS CTCATGGAAGATCCCT; C00319, s00557; -3; 16;; p. BS GTGGCGCAAACTCCCT; C00321, s00561; -7; 16;; p. BS GACTGGGGAATACCCC; C00322, s00563; -1; 16;; n. BS CAAGGGGTCACCCCCT; C00325, s00567; -1; 16;; n. BS CGCTGGGGAACGCCCG; C00326, s00569; -1; 16;; n. BS GGCTTGGAAATTCCCC; C00327, s00570; -5; 16;; p. BS CAAAGGGAGAGTCCCC; C00328, s00573; -1; 16;; n. BS GCTGGGGACACTCCCT; C00330, s00576; -4; 16;; p. BS TCAAGGGGAAACCCAG; C00332, s00579; -2; 16;; n. BS GCGGAGGGAAATCCCT; C00332, s00580; -1; 16;; n. BS TTTGTGGAAACTCCCC; C00336, s00587; -5; 16;; p. BS CAGCCGGGGAGTCCCA; C00337, s00589; -1; 16;; n. BS GAGAGGGAAAATCCCC; C00339, s00590; -1; 16;; n. BS AGATGGGGAATCCCCA; C00340, s00592; -1; 16;; n. BS TAAAGGGGAAATTCAG; C00341, s00594; -4; 16;; p. BS GGCGGGGGAACTTCTT; C00341, s00595; -1; 16;; n. BS GTCATGGAAATCCCCG; C00342, s00596; -5; 16;; p. BS CTTAGGGGAACTCCAG; C00342, s00597; -1; 16;; n. BS GGCCAGGAGATTCCAC; C00352, s00600; -5; 16;; p. BS AACACGGAAAAACCCT; C00347, s00605; -1; 16;; n. BS AGATGGGGAATCCCCA; C00348, s00607; 2; 16;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00775 XX ID V$NFY_Q6_01 XX DT 30.11.2002 (created); dtc. DT 07.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA NF-Y XX BF T00084; CBF(2); Species: rat, Rattus norvegicus. BF T00087; CBF-A; Species: rat, Rattus norvegicus. BF T00088; CBF-B; Species: rat, Rattus norvegicus. BF T01595; CBF-C; Species: rat, Rattus norvegicus. BF T01171; CP1; Species: chinese hamster, Cricetulus longicaudatus. BF T02478; CP1C; Species: human, Homo sapiens. BF T00150; NF-Y; Species: human, Homo sapiens. BF T01203; NF-Y; Species: human, Homo sapiens. BF T00083; NF-Y; Species: mouse, Mus musculus. BF T00092; NF-Y; Species: mouse, Mus musculus. BF T00153; NF-Y; Species: mouse, Mus musculus. BF T00613; NF-Y; Species: mouse, Mus musculus. BF T01202; NF-Y; Species: mouse, Mus musculus. BF T00614; NF-Y'; Species: mouse, Mus musculus. BF T00157; NF-YA; Species: human, Homo sapiens. BF T01804; NF-YA; Species: human, Homo sapiens. BF T00615; NF-YA; Species: mouse, Mus musculus. BF T00154; NF-YB; Species: human, Homo sapiens. BF T00616; NF-YB; Species: mouse, Mus musculus. BF T05215; NF-YB; Species: clawed frog, Xenopus. BF T05216; NF-YB; Species: chick, Gallus gallus. BF T02477; NF-YC; Species: mouse, Mus musculus. XX P0 A C G T 01 10 11 10 9 N 02 12 17 4 8 N 03 3 10 9 19 N 04 4 12 9 16 N 05 18 5 16 2 R 06 19 1 21 0 R 07 0 41 0 0 C 08 1 39 1 0 C 09 41 0 0 0 A 10 37 2 0 2 A 11 0 1 2 38 T 12 4 22 14 1 S 13 22 3 14 2 R XX BA 41 compiled sequences including 11 TRANSCompel sites XX BS CCGAGGCCATTCA; R00022; 4; 13;; n. BS NAGGAACCAATGA; R00090; -4; 13;; p. BS CCCCAGCCAATCA; R00228; 11; 13;; n. BS TCTCCACCAATGG; R00232; -2; 13;; n. BS CACCAACCAACGC; R00263; 13; 13;; n. BS TTCCAGCCACTCT; R00445; -5; 13;; p. BS ACTTGACCAATAG; R00564; -6; 13;; p. BS ACCTGACCAATGG; R00572; -6; 13;; p. BS ATGTAGCCATGTG; R00577; -6; 13;; p. BS TCTGAGCCAATCA; R00766; 6; 13;; n. BS TACAAACCAATCA; R00988; -2; 13;; n. BS GCAGAACCAATCA; R01076; -2; 13;; p. BS TTTTAACCAATCA; R01080; 4; 13;; n. BS AATTCGCCAATGA; R01443; -4; 13;; n. BS CACGCGCCAATCA; R01799; -3; 13;; p. BS CCTTGACCAATAG; R01858; 12; 13;; p. BS CCAGAACCAATCA; R01942; 2; 13;; n. BS CCTTAACCAATAG; R02888; 12; 13;; p. BS GCTGGGCAAATAG; R02959; 17; 13;; n. BS GTAAAGCCAATCA; R03038; 11; 13;; n. BS ATGGGGCCAATCA; R03039; -2; 13;; n. BS ATGGGGCCAATCA; R03040; 11; 13;; n. BS ATTCAGCCAATCG; R03043; 4; 13;; n. BS CCTTGACCAATGA; R03119; -5; 13;; p. BS AGTTGACCAATGA; R03477; -4; 13;; p. BS TATTTACCACTGG; R04200; 3; 13;; n. BS AAGCAGCCAATCA; R04344; 8; 13;; n. BS GCGTTGCCAAGCT; R04515; 6; 13;; p. BS GCTTAACCAATCA; R04516; 6; 13;; n. BS GATTCACCAATCG; R12441; 7; 13;; n. BS GAGTGACCAATGA; C00005, s00001; -2; 13;; p. BS CTTTGGCCAATCA; C00004, s00008; 2; 13;; n. BS TGTGGACGAATCA; C00180, s00293; -4; 13;; p. BS GGGCCGCCAATGG; C00190, s00313; -2; 13;; p. BS CCCAGGCCAATGA; C00206, s00342; -2; 13;; n. BS GACTGGCCAATGA; C00207, s00344; -2; 13;; n. BS TCTCAGCCAATGG; C00210, s00351; -2; 13;; n. BS GATCAGCCAATCG; C00211, s00352; -2; 13;; n. BS TCTCGGCCAATGG; C00212, s00355; -2; 13;; n. BS CACCGACCAATCC; C00227, s00383; -2; 13;; n. BS AGCCACCCAATCC; C00284, s00488; -6; 13;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00776 XX ID V$SREBP_Q3 XX DT 30.11.2002 (created); dtc. DT 08.06.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA SREBP XX BF T01559; SREBP-1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T04556; SREBP-1; Species: rabbit, Oryctolagus cuniculus. BF T04562; SREBP-1; Species: mouse, Mus musculus. BF T04563; SREBP-1; Species: domestic pig, Sus scrofa. BF T04584; SREBP-1; Species: chick, Gallus gallus. BF T01556; SREBP-1a; Species: human, Homo sapiens. BF T01557; SREBP-1b; Species: human, Homo sapiens. BF T01558; SREBP-1c; Species: human, Homo sapiens. BF T01562; SREBP-1c; Species: rat, Rattus norvegicus. BF T01560; SREBP-2; Species: human, Homo sapiens. BF T01561; SREBP-2; Species: hamster (Chinese hamster), Cricetulus griseus. BF T04553; SREBP-2; Species: chick, Gallus gallus. BF T04564; SREBP-2; Species: rabbit, Oryctolagus cuniculus. BF T04567; SREBP-2; Species: pig, Sus scrofa. XX P0 A C G T 01 3 3 4 0 V 02 2 3 3 2 N 03 2 3 4 2 N 04 5 3 3 0 V 05 0 2 0 9 T 06 0 11 0 0 C 07 11 0 0 0 A 08 0 9 2 0 C 09 2 8 1 0 C 10 0 11 0 0 C 11 0 6 1 4 Y 12 11 0 0 0 A XX BA 11 compiled sequences including 8 TRANSCompel sites XX BS GTTATCACGCCA; R04416; 5; 12;; p. BS CCGCTCACACTA; R04417; 4; 12;; n. BS GGCATCACCCCA; R04430; -3; 12;; p. BS AAAATCACCCCA; C00204, s00338; -3; 12;; p. BS NNCATCACCCCA; C00205, s00340; -3; 12;; p. BS GCTGTCAGCCCA; C00206, s00343; -3; 12;; p. BS ATACTCACACGA; C00207, s00345; -3; 12;; p. BS CGGGCCACCCTA; C00208, s00347; -5; 12;; p. BS CGGGCCACCCTA; C00209, s00348; -4; 12;; p. BS GCCATCACCCCA; C00210, s00350; -3; 12;; p. BS AAGCTCAGCCTA; C00211, s00353; -3; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00777 XX ID V$STAT_Q6 XX DT 30.11.2002 (created); dtc. DT 08.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA STAT XX BF T04759; STAT1; Species: human, Homo sapiens. BF T01575; STAT1alpha; Species: mouse, Mus musculus. BF T01492; STAT1alpha; Species: human, Homo sapiens. BF T01573; STAT1beta; Species: human, Homo sapiens. BF T01494; STAT2; Species: human, Homo sapiens. BF T01493; STAT3; Species: human, Homo sapiens. BF T01574; STAT3; Species: mouse, Mus musculus. BF T01577; STAT4; Species: human, Homo sapiens. BF T01576; STAT4; Species: mouse, Mus musculus. BF T04683; STAT5A; Species: human, Homo sapiens. BF T01579; STAT5A; Species: mouse, Mus musculus. BF T01578; STAT5A; Species: sheep, Ovis aries. BF T04684; STAT5B; Species: human, Homo sapiens. BF T00944; STAT5B; Species: mouse, Mus musculus. BF T04761; STAT5B; Species: rat, Rattus norvegicus. BF T01581; STAT6; Species: mouse, Mus musculus. BF T01580; STAT6; Species: human, Homo sapiens. XX P0 A C G T 01 5 6 11 8 N 02 9 6 8 7 N 03 7 12 3 8 N 04 9 5 6 10 N 05 4 10 5 11 N 06 0 0 0 30 T 07 0 0 1 29 T 08 0 30 0 0 C 09 0 9 1 20 T 10 4 2 14 10 K 11 9 0 21 0 G 12 1 0 23 6 G 13 21 3 5 1 A XX BA 30 compiled sequences including 24 TRANSCompel sites XX BS AGAAATTCTGGGG; R03322; -3; 13;; n. BS TCCTTTTCTGGGA; R11115; 6; 13;; n. BS CATGCTTCCGGGA; R12428; 6; 13;; n. BS TCTCTTTCTGAGA; R12435; -3; 13;; p. BS CAGTCTTCTTGGA; R12436; 5; 13;; p. BS TCTCTTTCTTAGA; R13064; 12; 13;; n. BS GGTGCTGCTGGGA; C00179, s00291; 2; 13;; n. BS GCCACTTCTGATA; C00182, s00296; -5; 13;; p. BS CGCGCTTCCTGAC; C00187, s00306; -5; 13;; p. BS GTCATTTCGGGGA; C00192, s00316; 3; 13;; n. BS CAGGCTTCCTGGA; C00293, s00509; 2; 13;; n. BS AATCCTTCTGGGA; C00294, s00510; -5; 13;; p. BS GCAGTTTCCAGGC; C00296, s00514; -2; 13;; n. BS TGAACTTCTTGGA; C00298, s00520; -5; 13;; p. BS GAGGTTTCCGGGA; C00299, s00521; -4; 13;; p. BS ACATTTTCCTGTA; C00300, s00524; -5; 13;; p. BS TACTTTTCTTAGA; C00303, s00530; 2; 13;; n. BS AGCAGTTCCCGTC; C00304, s00532; -3; 13;; p. BS GGATATTCCCGGG; C00306, s00535; -5; 13;; p. BS GGACTTTCCAGTT; C00308, s00536; 2; 13;; n. BS TTCTGTTCTTGGG; C00316, s00542; 3; 13;; n. BS TTCTGTTCTTGGG; C00311, s00542; 3; 13;; n. BS GTTTCTTCTGAGA; C00312, s00545; -4; 13;; p. BS GACATTTCTGATA; C00312, s00546; -5; 13;; p. BS GTTTCTTCTAGGA; C00314, s00547; -5; 13;; p. BS AACATTTCTGATA; C00314, s00548; -5; 13;; p. BS CACAGTTCTGAGA; C00315, s00550; 2; 13;; n. BS GGAAATTCTGAGA; C00315, s00551; -5; 13;; p. BS TTTCATTCTAGGA; C00315, s00552; -5; 13;; p. BS CTCTGTTCTTGGG; C00317, s00555; 3; 13;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00778 XX ID V$AHR_Q5 XX DT 21.01.2003 (created); sre. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AhR XX DE aryl hydrocarbon / dioxin receptor XX BF T00018; AhR; Species: mouse, Mus musculus. BF T00194; AhR; Species: mouse, Mus musculus. BF T00019; AhR; Species: rat, Rattus norvegicus. BF T00195; AhR; Species: rat, Rattus norvegicus. BF T01795; AhR; Species: human, Homo sapiens. BF T02270; AhR; Species: guinea pig, Cavia porcellus. BF T05398; AhR; Species: rabbit, Oryctolagus cuniculus. XX P0 A C G T 01 2 11 6 6 N 02 1 2 5 17 T 03 4 6 5 10 N 04 0 0 25 0 G 05 0 25 0 0 C 06 0 0 25 0 G 07 0 0 0 25 T 08 0 0 25 0 G 09 9 9 2 5 N 10 4 7 11 3 N 11 7 7 5 6 N XX BA 25 compiled genomic sites XX BS GTTGCGTGAGA; R00270; 13; 11;; n. BS GTGGCGTGTCT; R02649; 10; 11;; p. BS CTAGCGTGACA; R02650; 10; 11;; p. BS GTTGCGTGAGA; R02651; 10; 11;; p. BS CTAGCGTGCGT; R02652; 8; 11;; n. BS CTCGCGTGGAT; R02653; 10; 11;; p. BS CTCGCGTGAGA; R02654; 8; 11;; n. BS CTTGCGTGCGG; R13150; 7; 11;; n. BS TGGGCGTGCAG; R13159; 1; 11;; n. BS CTTGCGTGCGC; R13161; 1; 11;; n. BS GTTGCGTGAGA; R13162; 1; 11;; n. BS CTCGCGTGACT; R13163; 1; 11;; p. BS CTCGCGTGCTG; R13226; 4; 11;; p. BS TTAGCGTGTTC; R13227; 4; 11;; n. BS AAGGCGTGTGC; R13228; 5; 11;; n. BS TGTGCGTGTGT; R13237; 10; 11;; n. BS TGTGCGTGCAC; R13238; 9; 11;; n. BS TTCGCGTGACG; R13240; 8; 11;; n. BS GGGGCGTGGCA; R13248; 2; 11;; p. BS CCGGCGTGCGC; R13260; 3; 11;; p. BS CTTGCGTGTTT; R13262; 12; 11;; p. BS GTTGCGTGCCC; R13263; 12; 11;; p. BS TGTGCGTGACA; R13264; 1; 11;; p. BS CTCGCGTGCAG; R13268; 1; 11;; p. BS ACAGCGTGAGC; R13274; 7; 11;; p. XX // AC M00788 XX ID P$EMBP1_02 XX DT 05.03.2003 (created); abd. DT 11.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA EmBP-1b XX BF T01098; EmBP-1b; Species: wheat, Triticum aestivum. XX P0 A C G T 01 4 1 2 5 N 02 8 0 0 4 A 03 0 8 3 2 C 04 13 0 0 0 A 05 0 13 0 0 C 06 0 0 13 0 G 07 0 0 0 13 T 08 0 0 13 0 G 09 0 0 4 0 G 10 3 0 0 1 A XX BA 13 selected sequences XX BS GACACGTGGA; R13360; 5; 10;; p. BS GACACGTGGA; R13361; 5; 10;; p. BS TACACGTG; R13362; 7; 10; 15, 16; p. BS TACACGTG; R13363; 7; 10; 15, 16; p. BS TACACGTG; R13364; 7; 10; 15, 16; p. BS TACACGTG; R13365; 7; 10; 15, 16; p. BS TACACGTG; R13366; 7; 10; 15, 16; p. BS AACACGTG; R13367; 7; 10; 15, 16; p. BS ATGACGTG; R13368; 7; 10; 15, 16; p. BS ATGACGTG; R13369; 7; 10; 15, 16; p. BS CTGACGTGGT; R13370; 6; 10;; p. BS ATTACGTG; R13371; 7; 10; 15, 16; p. BS TACGTGGA; R13372; 1; 10; 1, 2; p. XX CC sequences were selected from a pool of random 14mers (5 rounds of selection and amplification) [1] XX RN [1]; RE0022218. RX PUBMED: 10561063. RA Niu X., Renshaw-Gegg L., Miller L., Guiltinan M. J. RT Bipartite determinants of DNA-binding specificity of plant basic leucine zipper proteins. RL Plant Mol. Biol. 41:1-13 (1999). XX // AC M00789 XX ID V$GATA_Q6 XX DT 08.03.2003 (created); dtc. DT 08.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA GATA XX BF T00305; GATA-1; Species: mouse, Mus musculus. BF T00267; GATA-1; Species: chick, Gallus gallus. BF T00306; GATA-1; Species: human, Homo sapiens. BF T00304; GATA-1A; Species: clawed frog, Xenopus laevis. BF T00307; GATA-2; Species: chick, Gallus gallus. BF T00567; GATA-2; Species: chick, Gallus gallus. BF T01302; GATA-2; Species: mouse, Mus musculus. BF T00308; GATA-2; Species: human, Homo sapiens. BF T00309; GATA-2; Species: clawed frog, Xenopus laevis. BF T00311; GATA-3; Species: human, Homo sapiens. BF T00310; GATA-3; Species: mouse, Mus musculus. BF T00314; GATA-3; Species: chick, Gallus gallus. BF T00312; GATA-3; Species: clawed frog, Xenopus laevis. BF T02532; GATA-4; Species: mouse, Mus musculus. BF T02682; GATA-4; Species: chick, Gallus gallus. BF T02687; GATA-4; Species: human, Homo sapiens. BF T02711; GATA-4; Species: clawed frog, Xenopus laevis. BF T02716; GATA-4; Species: rat, Rattus norvegicus. BF T02683; GATA-5; Species: chick, Gallus gallus. BF T02685; GATA-5; Species: mouse, Mus musculus. BF T02688; GATA-5; Species: human, Homo sapiens. BF T02712; GATA-5A; Species: clawed frog, Xenopus laevis. BF T02713; GATA-5B; Species: clawed frog, Xenopus laevis. BF T02684; GATA-6; Species: chick, Gallus gallus. BF T02686; GATA-6; Species: mouse, Mus musculus. BF T02689; GATA-6; Species: human, Homo sapiens. BF T02717; GATA-6; Species: rat, Rattus norvegicus. BF T02714; GATA-6A; Species: clawed frog, Xenopus laevis. BF T02715; GATA-6B; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 50 8 8 39 W 02 1 0 103 1 G 03 104 0 1 0 A 04 0 0 0 105 T 05 89 1 3 12 A 06 58 3 39 5 R 07 28 18 48 11 N XX BA 105 compiled sequences XX BS TGATAAG; R00507; 6; 7;; p. BS TGATAAG; R00513; 2; 7;; n. BS TGATAAA; R00514; 6; 7;; p. BS AGATAGC; R00515; 10; 7;; p. BS AGATAAG; R00518; 4; 7;; p. BS TGATAGT; R00522; 1; 7;; n. BS TGATAGG; R00523; 1; 7;; n. BS AGATTAG; R00524; 2; 7;; p. BS TGATAAG; R00525; 1; 7;; n. BS AGATAAA; R00534; 5; 7;; p. BS AGATGAA; R00536; 5; 7;; p. BS AGATAGC; R00538; 12; 7;; n. BS AGATTAG; R00539; 4; 7;; p. BS TGATTGA; R00540; 8; 7;; p. BS AGATAAG; R00541; 5; 7;; p. BS AGATTGG; R00543; 5; 7;; n. BS TGATAGG; R00544; 5; 7;; n. BS CTATAAA; R00548; 3; 7;; p. BS AGATAGT; R00550; 1; 7;; n. BS AGATAGG; R00566; -1; 7;; n. BS TGATAAG; R00569; 1; 7;; p. BS AGATAAA; R01218; 13; 7;; p. BS AGATAAT; R01247; 1; 7;; p. BS AGATAAG; R01253; 2; 7;; n. BS CGATAGT; R01254; -1; 7;; n. BS TGATAAG; R01710; 2; 7;; p. BS CGATAAA; R01944; 7; 7;; p. BS GGATACA; R02442; -2; 7;; n. BS AGATGGA; R02443; 3; 7;; p. BS AGATAGG; R02447; 8; 7;; n. BS AGATTGG; R02826; 3; 7;; p. BS AGATAAG; R02829; 5; 7;; n. BS TGATAAG; R02831; 13; 7;; n. BS AGATAAA; R02882; 2; 7;; n. BS AGATAGC; R02883; 3; 7;; p. BS TGATAGG; R02884; 4; 7;; p. BS TGATCAA; R02885; 3; 7;; n. BS TGATAAA; R02886; 3; 7;; n. BS AGATAAG; R02889; 12; 7;; n. BS TGATAAG; R03087; 2; 7;; p. BS AGATAAG; R03093; 7; 7;; p. BS TGATATC; R03113; 12; 7;; n. BS AGATAGT; R03115; 6; 7;; p. BS TGATAAT; R03116; 5; 7;; n. BS AGATAAG; R03206; 7; 7;; p. BS AGATAAG; R03207; -1; 7;; n. BS GGATACT; R03261; 10; 7;; n. BS AGATAAC; R03268; 1; 7;; p. BS CGATAAA; R03304; 7; 7;; n. BS AGATAAG; R03347; 1; 7;; n. BS TGATAGG; R03437; -1; 7;; n. BS AGATAAC; R03438; 3; 7;; p. BS TGATTAC; R03442; 2; 7;; p. BS AGATAAA; R03443; 4; 7;; n. BS AGATAAG; R03487; -1; 7;; n. BS AGATAGG; R03491; 3; 7;; n. BS AGATAAA; R03723; 3; 7;; n. BS GGGTGGG; R03736; 1; 7;; n. BS TGATAAG; R03737; 2; 7;; n. BS GGATAAG; R04200; -3; 7;; n. BS GGATAAG; R04201; -3; 7;; p. BS TGATAGA; R04289; 1; 7;; n. BS TGATAGC; R04292; -1; 7;; n. BS AGATAGG; R04294; 1; 7;; p. BS AGATAGA; R04296; -1; 7;; p. BS TGATAGC; R08150; 13; 7;; n. BS AGATAAG; R08165; 3; 7;; p. BS GGATAGA; R08167; 1; 7;; p. BS TGATTGG; R08192; 7; 7;; n. BS TGATAAG; R08193; 8; 7;; n. BS CGATATG; R08194; 6; 7;; n. BS AGATTAG; R08205; 3; 7;; p. BS TGATAGG; R08206; 3; 7;; p. BS TGATAGG; R08209; 8; 7;; n. BS AGATACA; R08210; -1; 7;; n. BS CGATAAA; R08219; 6; 7;; p. BS TGATTGG; R08220; 9; 7;; n. BS TGATATC; R08221; 21; 7;; p. BS CGATAGC; R08222; -1; 7;; p. BS AGATAAG; R08225; 6; 7;; n. BS AGATAAC; R08229; 3; 7;; p. BS TGATTGC; R08236; 4; 7;; p. BS AGATTAG; R08239; 20; 7;; n. BS GAATAAC; R08241; 6; 7;; p. BS AGATAAG; R08243; 6; 7;; n. BS TGATAAT; R08245; 15; 7;; n. BS AGATAAA; R08249; 4; 7;; n. BS AGATAGT; R08250; 1; 7;; n. BS CGATAGG; R08252; 1; 7;; p. BS TGATAGG; R08253; 4; 7;; p. BS TGATAAC; R08260; 21; 7;; p. BS TGATAAT; R08261; 16; 7;; n. BS AGATAGA; R08264; 3; 7;; n. BS AGATAGC; R08265; 12; 7;; n. BS AGATATA; R08270; 1; 7;; n. BS TGATAAA; R08271; 19; 7;; p. BS AGATAAA; R08272; 3; 7;; n. BS AGATAGT; R08276; -1; 7;; n. BS TGATAAA; R08287; 13; 7;; p. BS AGATAAA; R08288; 9; 7;; p. BS AGATTAC; R08290; 9; 7;; p. BS TGATAAC; R13027; 10; 7;; p. BS TGATATA; R13145; 12; 7;; p. BS TGATAGG; R13156; 2; 7;; p. BS GGATAGG; R13257; 16; 7;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00790 XX ID V$HNF1_Q6 XX DT 08.03.2003 (created); dtc. DT 08.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF-1 XX BF T01180; HNF-1alpha; Species: domestic pig, Sus scrofa. BF T01952; HNF-1alpha; Species: chick, Gallus gallus. BF T01211; HNF-1alpha; Species: mouse, Mus musculus. BF T00369; HNF-1alpha; Species: rat, Rattus norvegicus. BF T00368; HNF-1alpha-A; Species: human, Homo sapiens. BF T01950; HNF-1alpha-B; Species: human, Homo sapiens. BF T01951; HNF-1alpha-C; Species: human, Homo sapiens. BF T00889; HNF-1beta; Species: rat, Rattus norvegicus. BF T00890; HNF-1beta; Species: mouse, Mus musculus. BF T01955; HNF-1beta; Species: domestic pig, Sus scrofa. BF T00891; HNF-1beta-A; Species: human, Homo sapiens. BF T01953; HNF-1beta-B; Species: human, Homo sapiens. BF T01954; HNF-1beta-C; Species: human, Homo sapiens. XX P0 A C G T 01 10 3 4 17 W 02 9 1 17 7 R 03 4 1 25 4 G 04 0 2 0 32 T 05 3 2 2 27 T 06 28 2 1 3 A 07 22 8 1 3 A 08 0 0 0 34 T 09 13 5 8 8 N 10 19 3 4 8 A 11 3 2 2 27 T 12 1 8 2 23 T 13 18 3 5 8 A 14 17 5 6 6 A 15 4 19 2 9 C 16 12 6 6 10 N 17 7 7 14 6 N 18 10 9 4 11 N XX BA 34 compiled sequences XX BS TAATTACTAACCAAACTA; R00077; -5; 18;; n. BS TAGTTAATAATCTACAAT; R00081; 3; 18;; p. BS TGGTTAATGATCTACAGT; R00091; 5; 18;; p. BS TGGTTAATGATCTACAGT; R00099; 1; 18;; p. BS TGGTTAATATTCACCAGC; R00120; 5; 18;; p. BS ATGTAAATAATTTTCCAA; R00238; 6; 18;; n. BS CTGTTAATTATTGGCAAA; R00431; -1; 18;; p. BS AGGTTACTAGTTAACAGA; R00432; 3; 18;; p. BS TGATGATTAACCTAGTTT; R00436; -5; 18;; p. BS TAGTTAATATTTGACAGT; R00439; 4; 18;; n. BS GTGTAATTTATTTGAGTT; R01625; 2; 18;; p. BS TGTTTATTCAATAACTCT; R01800; 2; 18;; n. BS TAGTTAATCATTACTTCC; R01807; 1; 18;; p. BS CAGTTAATCATTACTTCA; R01913; -2; 18;; p. BS TGGTTTATTATTAGCTGC; R02780; 13; 18;; n. BS AGGTTAATGATTGGCAGC; R02910; 7; 18;; n. BS ATGTTTGTTCTTAAATAC; R02970; -2; 18;; p. BS GAGTTAATGTGTAATGAG; R03253; 4; 18;; n. BS AGTTAAATAGATATCAGA; R03260; -3; 18;; n. BS ATATGGCTGGTTGAGGCC; R03302; 2; 18;; p. BS TGTCTACTCTAGCCTACA; R03305; -3; 18;; n. BS TGGTTAATTTTTGCCCAG; R03485; 3; 18;; p. BS GTGTTCCTGCTCTTTGTC; R04123; 1; 18;; p. BS AAGTTAATTAGTAATTGT; R04237; -1; 18;; n. BS TGTTTAATAATCTTCTGC; R04238; -4; 18;; n. BS TAGTCACTGATAAACAGG; R04254; -3; 18;; n. BS AGGTTAATTCTTCTCTAA; R04474; 6; 18;; n. BS AGGTTCATATTTATCCGT; R08491; 2; 18;; n. BS AACTTAATATTTAAACTA; R12423; -2; 18;; p. BS TGGTTTATTATTAGCTGT; R12711; 18; 18;; n. BS TTGTTAATAATTAATACT; R13038; -1; 18;; p. BS GGGTTAATGGTTAATCGG; R13051; 1; 18;; n. BS TGGTTACTCTTTAACGTA; R13053; -2; 18;; p. BS CCACCACTAATGCGTGCC; R13269; 3; 18;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00791 XX ID V$HNF3_Q6 XX DT 08.03.2003 (created); dtc. DT 08.03.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF-3 XX BF T01104; HNF-3; Species: human, Homo sapiens. BF T02277; HNF-3; Species: clawed frog, Xenopus laevis. BF T00370; HNF-3; Species: mouse, Mus musculus. BF T03260; HNF-3; Species: atlantic salmon, Salmo salar. BF T02512; HNF-3alpha; Species: human, Homo sapiens. BF T02343; HNF-3alpha; Species: mouse, Mus musculus. BF T00371; HNF-3alpha; Species: rat, Rattus norvegicus. BF T01053; HNF-3beta; Species: clawed frog, Xenopus laevis. BF T02513; HNF-3beta; Species: human, Homo sapiens. BF T04889; HNF-3beta; Species: human, Homo sapiens. BF T03256; HNF-3beta; Species: chick, Gallus gallus. BF T01049; HNF-3beta; Species: rat, Rattus norvegicus. BF T02344; HNF-3beta; Species: mouse, Mus musculus. BF T02345; HNF-3gamma; Species: mouse, Mus musculus. BF T01050; HNF-3gamma; Species: rat, Rattus norvegicus. BF T02418; HNF-3gamma; Species: human, Homo sapiens. XX P0 A C G T 01 15 13 4 7 N 02 12 7 1 19 W 03 19 5 13 2 R 04 22 2 7 8 A 05 22 3 14 0 R 06 3 23 1 12 Y 07 37 2 0 0 A 08 35 4 0 0 A 09 38 0 0 1 A 10 3 22 1 13 Y 11 33 2 2 2 A 12 9 7 14 9 N 13 14 4 7 14 N XX BA 39 compiled sequences XX BS CTAAGTCAATAAT; R01464; 1; 13;; p. BS TTGAATAAACACC; R01800; 9; 13;; p. BS TTGTCAAAACACC; R02350; 2; 13;; n. BS AAGAACAAACATT; R02970; -3; 13;; n. BS GCGGCCACAAATA; R03140; -2; 13;; p. BS GTCTGCAAACAGA; R03144; 3; 13;; p. BS TAGAACAAACAAG; R03150; 1; 13;; p. BS CTACACAAATATG; R03444; -2; 13;; n. BS CTAAACAAACAGA; R04321; 3; 13;; p. BS TAAAACAAACAGG; R04324; -3; 13;; n. BS ATGTGCACACAGA; R04488; -2; 13;; n. BS TCTGGTAAATAAT; R04489; -2; 13;; n. BS TTGTGCAAACATA; R04490; -4; 13;; p. BS AAAGACAAACACT; R04656; 3; 13;; p. BS CTGGCCAAACAGA; R05015; 2; 13;; p. BS ATAAGCAAATAAT; R05018; 9; 13;; n. BS CTAAGTAAATAGT; R05019; 7; 13;; p. BS CAGAGCAAATATT; R05029; 14; 13;; n. BS CAAAACAAACTTA; R05073; 8; 13;; p. BS CCAAGCAAATATT; R05076; 5; 13;; p. BS CAATGTAAACAGA; R05078; 5; 13;; p. BS AGGTAAACACCTT; R05084; 5; 13;; n. BS TAAAACAAACGCG; R05085; 8; 13;; p. BS ATGTGCAAACAAT; R05086; 2; 13;; p. BS ACAAACAAAAAAC; R05101; -4; 13;; n. BS ACAAACAAACAAA; R05102; 4; 13;; p. BS ATAAATAAAAAGA; R05104; -4; 13;; n. BS GAACAAACATCGC; R05105; -2; 13;; n. BS ATTGACAAACAGT; R08890; 7; 13;; n. BS ATAAATCAATAGA; R08917; 1; 13;; n. BS ATAAGTAAATATT; R12969; 4; 13;; n. BS CCAAGTAAATAAT; R12970; 2; 13;; p. BS AAAGGCAAACACT; R12976; 4; 13;; p. BS CAGAACAAACAGA; R13072; 4; 13;; n. BS GTCAATAAAGAAG; R13180; -3; 13;; p. BS ATCTATAAATACA; R13181; 9; 13;; p. BS CTGGATAAATGGG; R13252; 9; 13;; n. BS AACAAGAATCAGA; R13253; 13; 13;; p. BS CCCAACAAACTCG; R13255; 4; 13;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00792 XX ID V$SMAD_Q6 XX DT 08.03.2003 (created); dtc. DT 25.06.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA SMAD XX BF T03885; Smad1; Species: human, Homo sapiens. BF T04254; Smad1; Species: mouse, Mus musculus. BF T04429; Smad1; Species: rat, Rattus norvegicus. BF T03886; Smad1.1; Species: clawed frog, Xenopus laevis. BF T04095; Smad2; Species: human, Homo sapiens. BF T04273; Smad2; Species: mouse, Mus musculus. BF T04232; Smad2; Species: rat, Rattus norvegicus. BF T04096; Smad3; Species: human, Homo sapiens. BF T04210; Smad3; Species: mouse, Mus musculus. BF T04431; Smad3; Species: rat, Rattus norvegicus. BF T05271; Smad3:Smad4; Species: human, Homo sapiens. BF T03882; Smad4; Species: rat, Rattus norvegicus. BF T05067; Smad4; Species: mouse, Mus musculus. BF T04292; Smad4; Species: human, Homo sapiens. XX P0 A C G T 01 10 1 1 0 A 02 0 0 11 1 G 03 10 1 0 1 A 04 0 11 0 1 C 05 5 2 1 4 N 06 0 5 4 3 B 07 2 6 2 2 C 08 4 4 2 2 N 09 2 4 2 4 N XX BA 12 compiled sequences XX BS AGACACCTC; R09881; 14; 9;; p. BS ATACACATT; R09935; 14; 9;; n. BS AGACACAGC; R09952; 7; 9;; p. BS GGACCCGCG; R10054; -3; 9;; n. BS CGCCCGCCC; R10056; 4; 9;; p. BS AGACTGTCT; R10061; 2; 9;; n. BS AGACGGCCA; R10063; 18; 9;; p. BS AGACATGGT; R10069; 22; 9;; p. BS AGATATCAT; R10093; 14; 9;; p. BS AGTCTGTAA; R13039; -3; 9;; n. BS AGACTTCAG; R13041; 1; 9;; n. BS AGACTCCAC; R13211; 6; 9;; p. XX RN [1]; RE0024406. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 4:0003 (2004). RN [2]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [3]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00793 XX ID V$YY1_Q6 XX DT 08.03.2003 (created); dtc. DT 23.11.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA YY1 XX BF T00275; YY1; Species: chick, Gallus gallus. BF T00278; YY1; Species: mouse, Mus musculus. BF T00865; YY1; Species: mouse, Mus musculus. BF T00915; YY1; Species: human, Homo sapiens. BF T04970; YY1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 2 0 17 4 G 02 1 21 1 0 C 03 0 21 0 2 C 04 21 1 1 0 A 05 0 1 1 21 T 06 2 9 6 6 N 07 2 1 2 18 T 08 1 3 3 16 T 09 2 4 10 7 N XX BA 23 compiled sequences XX BS GCCGTCGCC; R00034; 9; 9;; n. BS GCCATCATG; R00284; 8; 9;; p. BS GGCATTTTG; R00603; -2; 9;; p. BS GCCATCTTG; R00848; 4; 9;; n. BS GCCATTTTG; R01149; 2; 9;; p. BS ACCATTTTC; R01161; 4; 9;; n. BS GCCATCTGT; R01329; 4; 9;; p. BS GCCATCCGC; R01330; 4; 9;; p. BS GCCATCTTG; R01833; 4; 9;; p. BS GCCATGTAC; R02999; 6; 9;; n. BS GCCATATTT; R03000; 6; 9;; n. BS GCCATCTTT; R03002; 6; 9;; p. BS GACATTTTG; R03174; 8; 9;; p. BS TCCATTTTG; R03175; 7; 9;; p. BS TCTAGGTTT; R03177; 11; 9;; n. BS GCTCCATTT; R03321; 3; 9;; n. BS TCCATGGTT; R04077; -3; 9;; n. BS GCCATCTTG; R04776; 4; 9;; n. BS GCCATTTTG; R04838; 9; 9;; n. BS GCCATCTTG; R04900; 12; 9;; p. BS ACCATGTCA; R04906; -1; 9;; n. BS TCCATGTGT; R09521; 10; 9;; p. BS GCCATGACA; R11726; 12; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00794 XX ID V$TTF1_Q6 XX DT 08.03.2003 (created); dtc. DT 08.06.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TTF-1 XX BF T00856; Nkx2-1; Species: rat, Rattus norvegicus. BF T00857; Nkx2-1; Species: human, Homo sapiens. BF T00858; Nkx2-1; Species: chick, Gallus gallus. BF T00859; Nkx2-1; Species: mouse, Mus musculus. BF T02098; Nkx2-1; Species: dog, Canis canis. BF T04271; Nkx2-1; Species: chick, Gallus gallus. BF T05372; Nkx2-1; Species: baboon, Papio hamadryas. XX P0 A C G T 01 8 15 4 4 N 02 9 12 4 6 N 03 2 15 8 6 N 04 6 8 3 14 N 05 1 27 2 1 C 06 30 0 0 1 A 07 24 0 7 0 A 08 1 0 30 0 G 09 11 4 5 11 N 10 8 4 16 3 R 11 5 9 9 8 N 12 5 11 5 10 N XX BA 31 compiled sequences XX BS TACTCAAGTATT; R01879; 3; 12;; p. BS GACTCAAGTAGA; R01880; 4; 12;; p. BS CAGTCAAGTGTT; R01882; 3; 12;; p. BS AACAAAGGTGCC; R04318; 9; 12;; n. BS CTGCCAAGTGCT; R04320; 3; 12;; n. BS GCACCTGGAGGG; R04657; 2; 12;; p. BS ATCACAAGATGA; R05014; 5; 12;; n. BS TCTCCAGGACAA; R12975; 19; 12;; p. BS AAGTGAAGTGGC; R12977; 6; 12;; p. BS AGGGCAAGCCCT; R13138; 2; 12;; n. BS CTCTCAAGAGCA; R13139; 14; 12;; p. BS TGCTCAAGAGTA; R13140; 6; 12;; p. BS CCCCCAAGGCCC; R13143; 9; 12;; n. BS CCCTCAAGGTTC; R13152; 7; 12;; p. BS CTCTGAAGGAAC; R13155; 9; 12;; p. BS GACTCAAGTAGG; R13174; 9; 12;; p. BS CCCTCAAGGGTC; R13190; 7; 12;; p. BS CCCTCAAGGGTC; R13192; 7; 12;; p. BS GTCCTAAGTGTT; R13193; -1; 12;; p. BS ACTACAAAACCT; R13194; 1; 12;; n. BS CGGGCAGGAAGC; R13198; -1; 12;; n. BS CCCACAAGAGGT; R13201; 4; 12;; n. BS TATTCAGGCAGT; R13203; -4; 12;; n. BS CTTCCAAGAGAG; R13204; -3; 12;; p. BS AAGTCAAGCACT; R13205; -3; 12;; n. BS ACTCCAGGTTCC; R13206; -5; 12;; n. BS CCTTCAGGAATC; R13207; -4; 12;; n. BS CCCACAAGAGGT; R13210; 4; 12;; n. BS AAACCAAGTGAC; R13231; 9; 12;; p. BS CCGGCAAGCGAG; R13250; 7; 12;; n. BS CGGACAAGTGCG; R13251; 7; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00795 XX ID V$OCT_Q6 XX DT 08.03.2003 (created); dtc. DT 08.06.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA Octamer XX BF T02141; OCA-B; Species: human, Homo sapiens. BF T02142; OCA-B; Species: mouse, Mus musculus. BF T00645; Oct-10; Species: mouse, Mus musculus. BF T00659; Oct-9; Species: mouse, Mus musculus. BF T00545; Oct-B1; Species: human, Homo sapiens. BF T01191; Oct-B1; Species: monkey, Cercopithecus aethiops. BF T00663; oct-B2; Species: human, Homo sapiens. BF T00664; oct-B3; Species: human, Homo sapiens. BF T00666; Oct-R; Species: cat, Felis silvestris catus. BF T00660; Octa-factor; Species: human, Homo sapiens. BF T00661; octamer-binding factor; Species: clawed frog, Xenopus. BF T01225; octamer-binding factor; Species: human, Homo sapiens. BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T01192; POU2F1; Species: mouse, Mus musculus. BF T01466; POU2F1; Species: hamster (Chinese hamster), Cricetulus griseus. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. BF T01862; POU2F1b; Species: mouse, Mus musculus. BF T01863; POU2F1c; Species: mouse, Mus musculus. BF T00649; POU2F2; Species: cat, Felis silvestris catus. BF T00650; POU2F2; Species: rat, Rattus rattus. BF T01032; POU2F2; Species: chick, Gallus gallus. BF T00647; POU2F2; Species: human, Homo sapiens. BF T00648; POU2F2A; Species: mouse, Mus musculus. BF T00662; POU2F2B; Species: human, Homo sapiens. BF T00964; POU2F2B; Species: mouse, Mus musculus. BF T01871; POU2F2B; Species: rat, Rattus rattus. BF T00665; POU2F2C; Species: human, Homo sapiens. BF T01874; POU2F3; Species: mouse, Mus musculus. BF T00655; POU3F1; Species: human, Homo sapiens. BF T00656; POU3F1; Species: mouse, Mus musculus. BF T00969; POU3F1; Species: rat, Rattus norvegicus. BF T00630; POU3F2; Species: human, Homo sapiens. BF T01524; POU3F2; Species: rat, Rattus norvegicus. BF T01873; POU3F2; Species: mouse, Mus musculus. BF T00658; POU3F3; Species: mouse, Mus musculus. BF T01878; POU4F1; Species: mouse, Mus musculus. BF T01879; POU4F1; Species: rat, Rattus norvegicus. BF T01877; POU4F1(l); Species: mouse, Mus musculus. BF T04463; POU4F1(l); Species: human, Homo sapiens. BF T00651; POU5F1; Species: mouse, Mus musculus. BF T00653; POU5F1 (Oct-5); Species: mouse, Mus musculus. BF T00652; POU5F1A; Species: human, Homo sapiens. BF T01872; POU5F1B; Species: human, Homo sapiens. BF T04471; POU5F1C; Species: human, Homo sapiens. XX P0 A C G T 01 10 7 10 28 T 02 14 12 15 14 N 03 37 7 2 9 A 04 6 2 0 47 T 05 7 5 1 42 T 06 6 2 2 45 T 07 11 3 34 7 G 08 3 50 0 2 C 09 53 0 0 2 A 10 1 1 1 52 T 11 27 4 10 14 N XX BA 55 compiled sequences XX BS TAATTAGCATA; R00306; -2; 11;; p. BS ATATTTGCATT; R00551; 9; 11;; n. BS TTATTTGCATA; R00662; -2; 11;; p. BS TCATTTGCATA; R00664; 1; 11;; n. BS ACATTTGCATA; R00666; -2; 11;; p. BS TCGTTAGCATG; R00814; 14; 11;; p. BS CGCATGGCATC; R00815; 9; 11;; n. BS GGAATTCCATT; R00820; 2; 11;; n. BS CGTATCTCATT; R00824; 4; 11;; n. BS TTATTTGCATA; R00834; -1; 11;; n. BS GGATTTGCATA; R00842; 9; 11;; n. BS GTATTTGCATA; R00855; -2; 11;; p. BS TAATTTGCATT; R00872; -2; 11;; p. BS CGATTTGCATA; R00888; -2; 11;; p. BS TGATTTGCATA; R00893; 1; 11;; p. BS TTAATTGCATG; R00932; 1; 11;; p. BS TGTTTTACATA; R00936; -1; 11;; n. BS TGATTTGCATT; R01090; -2; 11;; p. BS TCATTTGCATA; R01176; 1; 11;; n. BS TGCTTTGCATA; R01400; -2; 11;; p. BS GAATTTGCATG; R01500; -1; 11;; n. BS CTATTTGCATA; R01504; 1; 11;; n. BS TATTTTACATT; R01635; 9; 11;; p. BS TGATTTGCATG; R01638; 7; 11;; p. BS TGCTTTGCATT; R01682; 10; 11;; n. BS CAATTTGCATG; R01734; -2; 11;; p. BS GAATTGACATC; R01779; 13; 11;; n. BS TCATTAGCATG; R01917; 3; 11;; n. BS TTATTTGCATA; R01933; -2; 11;; p. BS TCATTATCATA; R01989; 5; 11;; n. BS AAATCTGAATA; R02001; 3; 11;; p. BS TGCTTTGCAAT; R02584; 2; 11;; n. BS GTGTCTGATTG; R02733; -6; 11;; p. BS AATTATTCATC; R02736; -1; 11;; n. BS GAATTTGCATT; R02824; 6; 11;; p. BS TTATTTACATA; R03010; 3; 11;; p. BS GCACTTCCATT; R03014; -2; 11;; p. BS CCAACAGCATC; R03315; -6; 11;; p. BS TGATTTGCATG; R03417; 4; 11;; n. BS TACTTTGCATA; R03426; 8; 11;; p. BS TAAATTACACA; R03427; 15; 11;; n. BS ACTTATCCAGT; R04200; -4; 11;; p. BS ATATCTACTTA; R04201; 1; 11;; n. BS TGCTTTACATG; R04221; -2; 11;; p. BS AGATTTGCATT; R05056; 16; 11;; n. BS CATTATACATA; R08238; 20; 11;; p. BS AAATATTCATT; R08525; -2; 11;; p. BS TTATTTGCATA; R09467; -2; 11;; p. BS GCTCCTGCATA; R09970; 15; 11;; n. BS ATTTTATAATA; R09973; 8; 11;; p. BS TTATATATATA; C00047, s00069; 1; 11;; p. BS TTATTTACATA; C00048, s00072; -2; 11;; p. BS GCATACTCATG; C00049, s00073; 3; 11;; n. BS TCCTGTATATA; C00146, s00227; 1; 11;; p. BS AATTATTCATT; C00365, s00634; 1; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00796 XX ID V$USF_Q6_01 XX DT 08.03.2003 (created); dtc. DT 12.01.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA USF XX BF T00870; USF; Species: hamster. BF T00872; USF; Species: chick, Gallus gallus. BF T00876; USF; Species: duck, Cairina moschata. BF T00875; USF-1; Species: rat, Rattus norvegicus. BF T00877; USF-1; Species: mouse, Mus musculus. BF T02378; USF-1; Species: Kenyan clawed frog, Xenopus borealis. BF T00874; USF1; Species: human, Homo sapiens. BF T00924; USF1:USF2; Species: rat, Rattus norvegicus. BF T05262; USF1:USF2; Species: rat, Rattus norvegicus. BF T05418; USF1a; Species: rabbit, Oryctolagus cuniculus. BF T05419; USF1b; Species: rabbit, Oryctolagus cuniculus. BF T00878; USF2; Species: human, Homo sapiens. BF T01555; USF2; Species: mouse, Mus musculus. BF T02115; USF2; Species: rat, Rattus norvegicus. BF T02377; USF2b; Species: human, Homo sapiens. XX P0 A C G T 01 12 8 14 2 N 02 18 7 10 1 R 03 8 19 6 3 C 04 2 33 0 1 C 05 29 5 1 1 A 06 2 25 7 2 C 07 4 2 30 0 G 08 1 1 3 31 T 09 0 2 34 0 G 10 25 1 7 3 A 11 0 20 12 4 S 12 12 12 4 8 N XX BA 36 compiled sequences XX BS CCGCCTGCGTCA; R00336; 1; 12;; n. BS AGACCCGTGACC; R00441; -1; 12;; p. BS GACCCCGTGACC; R00443; -3; 12;; p. BS GTCCACGTCACC; R00693; 6; 12;; p. BS GCCTACGTCACG; R00711; 4; 12;; n. BS GGCCACGTGACC; R00994; 1; 12;; p. BS GAGCACGTGATA; R01437; -3; 12;; n. BS GAACACGTGGCT; R01583; -1; 12;; n. BS CCACACGTGATC; R01697; 2; 12;; n. BS CCCCACGTGACA; R01768; 1; 12;; n. BS AGACACATGTCG; R02015; 7; 12;; p. BS CAACACGGGGCA; R02078; 2; 12;; n. BS AAGAGAGTGAGG; R02082; -1; 12;; n. BS TGACCAGTGACC; R02090; 6; 12;; n. BS CACCACGTGAGA; R03005; 3; 12;; n. BS GACCACGTGTGT; R03132; 10; 12;; p. BS TGTCAGGTGACA; R03187; -1; 12;; n. BS AGCCACATGGGA; R03501; -3; 12;; p. BS AACCTCGTGACT; R03990; 6; 12;; n. BS GAGAATGGGAGC; R04351; -1; 12;; n. BS GACCACGTGAGA; R04378; 7; 12;; p. BS GATCAGCTGACT; R04408; 4; 12;; p. BS AACCACGGGAGT; R04419; 10; 12;; n. BS ACCCACGTGATG; R04420; 11; 12;; p. BS CACCACGTGAGA; R04433; 16; 12;; n. BS GGACACGTGAGA; R04436; 4; 12;; n. BS AACCCCATGACC; R04437; 5; 12;; n. BS ACCCACATGGCC; R04438; 3; 12;; n. BS AATCACGTGATT; R04439; 6; 12;; p. BS GACCACGTGGGC; R08471; -3; 12;; p. BS AGACAGGTGGGA; R09477; -3; 12;; n. BS GGCCAGGTGACC; R12986; 17; 12;; p. BS CAGCAGGTGACC; R13028; -2; 12;; p. BS AGGCAGGAGGGT; R13030; 5; 12;; n. BS CCCCACCTGACA; R13165; 16; 12;; p. BS GACCAGGTGCCT; C00288, s00498; 13; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00797 XX ID V$HIF1_Q3 XX DT 09.03.2003 (created); vma. DT 18.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA HIF-1 XX DE hypoxia induced factor XX BF T01609; HIF-1; Species: human, Homo sapiens. BF T04667; HIF-1; Species: mouse, Mus musculus. BF T05377; HIF-1; Species: cattle, Bos taurus. BF T05404; HIF-1; Species: rat, Rattus norvegicus. BF T01610; HIF-1alpha; Species: human, Homo sapiens. XX P0 A C G T 01 2 4 15 2 G 02 5 11 3 4 N 03 5 5 11 2 N 04 1 3 9 10 K 05 22 0 1 0 A 06 0 23 0 0 C 07 0 0 23 0 G 08 0 0 0 23 T 09 0 0 23 0 G 10 2 17 3 1 C 11 3 4 12 4 G 12 1 5 13 4 G 13 1 9 7 6 N 14 7 7 5 4 N XX BA 23 compiled genomic binding sites XX BS CCCTACGTGCTGTC; R03219; 2; 14;; p. BS GGCAACGTGCAGCC; R10172; 5; 14;; n. BS GCATACGTGGGCTC; R10227; 5; 14;; p. BS GTGTACGTGCAGGA; R10350; 2; 14;; n. BS AAATACGTGCGCTT; R10350; 19; 14;; n. BS GCGTACGTGCCTCA; R10395; 6; 14;; p. BS TCGGACGTGACTCG; R10593; 7; 14;; n. BS CCGGACGTGGGGCC; R10594; 5; 14;; p. BS GAGTACGTGACGGA; R10595; 2; 14;; p. BS GAGTGCGTGCGGGA; R10596; 6; 14;; p. BS CTACACGTGGGGTT; R10597; 7; 14;; p. BS GCGGACGTGCGGGA; R10599; 2; 14;; n. BS GTGTACGTGTGTAA; R13214; 12; 14;; n. BS ACTGACGTGCACTG; R13220; 5; 14;; n. BS GACTACGTGCTGCC; R13221; 3; 14;; p. BS GCGGACGTGCTGGC; R13288; 3; 14;; p. BS GAGGACGTGCCACG; R13288; 16; 14;; n. BS GCAGACGTGCGTGT; R13354; 2; 14;; n. BS GCGTACGTGCTGCA; R13355; 12; 14;; p. BS TGAGACGTGCGGCT; R13356; 9; 14;; n. BS GCCGACGTGCGCTC; R13357; 6; 14;; n. BS GGCCACGTGCGCCG; R13358; 13; 14;; n. BS CTTCACGTGCGGGG; R13359; 1; 14;; p. XX // AC M00798 XX ID P$MYBAS1_01 XX DT 30.05.2003 (created); abd. DT 30.05.2003 (updated); abd. CO Copyright (C), Biobase GmbH. XX NA MYBAS1 XX BF T05553; MYBAS1; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 4 7 4 2 N 02 4 7 5 2 N 03 5 6 5 2 N 04 0 9 2 9 Y 05 20 0 0 0 A 06 20 0 0 0 A 07 0 20 0 0 C 08 3 4 6 6 N 09 2 4 9 4 N 10 3 9 3 4 N 11 2 8 0 8 Y XX BA 20 selected sequences XX BS CCCAACCCGT; R13434; 1; 11; 1; p. BS GGGCAAC; R13441; 23; 11; 30, 31, 32, 33; p. BS GTCCAACGGTT; R13442; 11; 11;; p. BS GGGTAACGGCC; R13443; 6; 11;; p. BS AAGTAACCCCC; R13444; 7; 11;; p. BS CGTTAACGGC; R13445; 17; 11; 27; p. BS CCACAACTGCC; R13446; 8; 11;; p. BS CGCTAACCTCT; R13447; 8; 11;; p. BS ACATAACTAAT; R13448; 6; 11;; p. BS CCGTAACAGTC; R13449; 3; 11;; p. BS TTACAACATAT; R13450; 11; 11;; p. BS GAACGTGC; R13451; 1; 11; 1, 2, 3; p. BS CATCAACTGCC; R13452; 16; 11;; p. BS TAACCGGA; R13453; 1; 11; 1, 2, 3; p. BS CAATAACGGAC; R13454; 11; 11;; p. BS GCCGAACTACC; R13455; 1; 11;; p. BS ACCTAACACCT; R13456; 1; 11;; p. BS AGGCAACGGTA; R13457; 15; 11;; p. BS CAACAACTTTT; R13458; 6; 11;; p. BS TCCCAACTCCT; R13459; 12; 11;; p. XX CC sites were selected from a pool of oligonucleotides containing a random 23-bp core (only the core is shown) in six rounds of selection and amplification [22859) XX RN [1]; RE0022859. RX PUBMED: 11500571. RA Yang S., Sweetman J. P., Amirsadeghi S., Barghchi M., Huttly A. K., Chung W. I., Twell D. RT Novel anther-specific myb genes from tobacco as putative regulators of phenylalanine ammonia-lyase expression. RL Plant Physiol. 126:1738-1753 (2001). XX // AC M00799 XX ID V$MYC_Q2 XX DT 02.06.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA Myc XX BF T00140; c-Myc; Species: human, Homo sapiens. BF T00142; c-Myc; Species: rat, Rattus norvegicus. BF T00143; c-Myc; Species: mouse, Mus musculus. BF T00523; Max; Species: mouse, Mus musculus. BF T00489; Max1; Species: human, Homo sapiens. XX P0 A C G T 01 0 21 0 0 C 02 20 0 0 1 A 03 0 21 0 0 C 04 0 2 18 1 G 05 0 0 1 20 T 06 1 0 19 1 G 07 0 8 8 5 S XX BA 21 compiled sequences including 1 TRANSCompel sites XX BS CTCTTAT; R01916; 2; 7;; p. BS CACGTGC; R04414; -1; 7;; n. BS CACGTGC; R04415; 9; 7;; n. BS CACGTGG; R04462; 4; 7;; p. BS CACGTGG; R08887; -1; 7;; n. BS CACGTGG; R08888; 1; 7;; p. BS CACGTGC; R08889; 1; 7;; p. BS CACGTGG; R08891; 1; 7;; p. BS CACGTGT; R08892; 1; 7;; p. BS CACGTGC; R08895; 1; 7;; p. BS CACGTGT; R08897; 1; 7;; p. BS CACGTGC; R08899; 1; 7;; p. BS CACCTGT; R09477; 1; 7;; p. BS CACCGTC; R09480; 1; 7;; p. BS CACGTGC; R09484; -1; 7;; n. BS CACGTGC; R09493; 1; 7;; p. BS CACGTGG; R09539; -1; 7;; n. BS CACGTGT; R09544; 1; 7;; p. BS CACGTGG; R09594; 3; 7;; n. BS CACGTGG; R09595; 4; 7;; p. BS CACGTGG; C00119, s00174; 2; 7;; p. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00800 XX ID V$AP2_Q3 XX DT 02.06.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA AP-2 XX BF T00034; AP-2; Species: rat, Rattus norvegicus. BF T00033; AP-2alpha; Species: mouse, Mus musculus. BF T00035; AP-2alphaA; Species: human, Homo sapiens. BF T02466; AP-2alphaB; Species: human, Homo sapiens. BF T02467; AP-2beta; Species: human, Homo sapiens. BF T02469; AP-2beta; Species: mouse, Mus musculus. BF T02470; AP-2gamma; Species: mouse, Mus musculus. XX P0 A C G T 01 3 4 10 0 G 02 0 8 6 3 S 03 0 17 0 0 C 04 2 10 4 1 C 05 0 8 7 2 S 06 2 12 0 3 C 07 8 1 8 0 R 08 3 1 13 0 G 09 0 2 15 0 G 10 0 16 1 0 C 11 3 2 7 5 N 12 6 0 9 2 R 13 6 3 3 5 N 14 6 1 10 0 R 15 4 4 6 3 N 16 3 5 6 3 N XX BA 17 compiled sequences including 1 TRANSCompel sites XX BS GCCCCAAACCTATATC; R00183; -9; 16;; n. BS GCCGGCCGGCGGCGGG; R00959; 1; 16;; n. BS CGCCTCGCGCTGAAGG; R01031; -6; 16;; n. BS GGCCGCGGGCGGTCAG; R01034; -4; 16;; n. BS GGCTCCAAGCGAAACA; R01035; 10; 16;; n. BS ATCCCCAGCCCTGGGC; R01054; -9; 16;; n. BS GCCGGTGGGCGGAGAT; R01157; 2; 16;; n. BS ACCCCCGAGCTGTGCT; R01158; 7; 16;; p. BS GCCGGCGGGCTGCAGC; R01261; -5; 16;; n. BS CCCAGCAGGCAGAAGT; R01404; -9; 16;; n. BS GTCCTCAGGCGTTGAC; R02702; 6; 16;; p. BS CGCCCCAGGCCACGTG; R04414; 1; 16;; n. BS GCCGCAGGGCGGGGAG; R04670; 4; 16;; n. BS AGCCCCAGGCAAAGCA; R08502; -3; 16;; n. BS CCCAGCAGGCTATAGA; R08882; -6; 16;; n. BS GGCCGTGGGCGGGGCG; R13305; -3; 16;; n. BS GTCCCTGGGGAAAGTC; C00346, s00603; -6; 16;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00801 XX ID V$CREB_Q3 XX DT 02.06.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA CREB XX BF T01379; 120-kDa CRE-binding protein; Species: human, Homo sapiens. BF T00442; 47-kDa CRE bind. prot.; Species: rat, Rattus norvegicus. BF T00051; ATF; Species: human, Homo sapiens. BF T00968; ATF-1; Species: human, Homo sapiens. BF T01304; ATF-1; Species: mouse, Mus musculus. BF T00167; ATF-2; Species: human, Homo sapiens. BF T01303; ATF-4; Species: human, Homo sapiens. BF T00052; ATF-a; Species: human, Homo sapiens. BF T01802; ATF2; Species: human, Homo sapiens. BF T01095; ATF3; Species: rat, Rattus norvegicus. BF T01313; ATF3; Species: human, Homo sapiens. BF T01017; CRE-BP2; Species: mouse, Mus musculus. BF T01382; CRE-BP2; Species: rat, Rattus norvegicus. BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T02361; CREBbeta; Species: mouse, Mus musculus. BF T01314; CREMalpha; Species: mouse, Mus musculus. BF T01803; CREMalpha; Species: human, Homo sapiens. BF T01315; CREMbeta; Species: mouse, Mus musculus. BF T01316; CREMgamma; Species: mouse, Mus musculus. BF T01309; CREMtau; Species: mouse, Mus musculus. BF T01919; CREMtau; Species: rat, Rattus norvegicus. BF T02108; CREMtau1; Species: mouse, Mus musculus. BF T02109; CREMtau2; Species: mouse, Mus musculus. BF T01602; CREMtaualpha; Species: mouse, Mus musculus. BF T00166; deltaCREB; Species: human, Homo sapiens. BF T00165; deltaCREB; Species: rat, Rattus norvegicus. XX P0 A C G T 01 2 42 3 6 C 02 2 1 49 1 G 03 0 1 0 52 T 04 0 53 0 0 C 05 51 1 0 1 A 06 3 16 16 18 N XX BA 53 compiled sequences including 11 TRANSCompel sites XX BS CGTCAG; R00309; -1; 6;; n. BS CGTCAT; R00322; 4; 6;; p. BS CGTCAC; R00343; 10; 6;; p. BS CGTCAC; R00349; 1; 6;; n. BS CGTCAC; R00352; -1; 6;; n. BS CGTCAT; R00366; -1; 6;; n. BS CGTCAC; R00454; 1; 6;; n. BS CGTCAC; R00455; 5; 6;; p. BS CGTCAG; R00468; 3; 6;; p. BS CGTCAC; R00471; 1; 6;; n. BS CGTCAG; R00779; 6; 6;; n. BS CGTCAA; R00780; 7; 6;; n. BS CGTCAA; R00807; 9; 6;; p. BS CGTCAG; R00963; 12; 6;; p. BS CGTCAG; R01215; 4; 6;; p. BS CGCCAG; R01256; -1; 6;; n. BS CGTCAG; R01258; 3; 6;; p. BS CGTCAG; R01358; 2; 6;; n. BS CGTCAT; R01534; 6; 6;; n. BS CGTCAC; R01559; 10; 6;; n. BS CGTCAC; R02403; -1; 6;; n. BS CGTCAC; R02427; 7; 6;; n. BS CGTCAG; R02437; 5; 6;; n. BS CGTCAT; R02812; 4; 6;; n. BS CGTCAT; R03104; 3; 6;; p. BS CGTCAG; R03401; 4; 6;; p. BS CGTCAT; R03430; 11; 6;; p. BS CATCAT; R03694; 12; 6;; n. BS CGTCAC; R03918; 7; 6;; p. BS TGTCAT; R04029; 2; 6;; n. BS TGTCAC; R04032; -1; 6;; n. BS CGTCAT; R04044; 6; 6;; p. BS CGTCAG; R04045; -1; 6;; n. BS CGTCAT; R04356; 5; 6;; n. BS CTTCCA; R04501; 4; 6;; n. BS TGTCAT; R04882; 7; 6;; n. BS CGTCAT; R04884; 7; 6;; n. BS AGTCAT; R08493; 5; 6;; p. BS CGTCAT; R09519; 5; 6;; n. BS CATCAC; R11477; 3; 6;; n. BS CGTCAG; R11553; 4; 6;; p. BS GGTCAC; R13230; 7; 6;; p. BS CGTCAT; C00088, s00135; 4; 6;; p. BS TGTCAT; C00092, s00138; -1; 6;; n. BS TGTCAG; C00093, s00140; 1; 6;; n. BS GCTCAT; C00318, s00223; -1; 6;; n. BS AGTCAT; C00168, s00271; 3; 6;; p. BS TGTCTG; C00197, s00325; 2; 6;; n. BS CGTCAC; C00209, s00349; 3; 6;; p. BS CGTCAG; C00222, s00374; 3; 6;; p. BS CGTCAC; C00225, s00378; 5; 6;; p. BS GGTCAG; C00348, s00606; 4; 6;; p. BS CGTCAC; C00369, s00641; -1; 6;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00802 XX ID V$PIT1_Q6 XX DT 02.06.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA Pit-1 XX BF T00325; POU1F1; Species: human, Homo sapiens. BF T01172; POU1F1; Species: mouse, Mus musculus. BF T00691; POU1F1a; Species: rat, Rattus norvegicus. BF T01516; POU1F1b; Species: rat, Rattus norvegicus. BF T01902; POU1F1c; Species: rat, Rattus norvegicus. XX P0 A C G T 01 7 3 2 5 N 02 9 6 0 2 M 03 1 0 0 16 T 04 0 1 3 13 T 05 0 17 0 0 C 06 12 1 0 4 A 07 2 0 0 15 T 08 9 1 4 3 A 09 9 4 0 4 A 10 6 0 1 10 W 11 0 3 3 11 T 12 11 2 4 0 A 13 4 1 0 12 T 14 8 3 1 5 W 15 4 7 2 4 N 16 7 6 1 3 M 17 3 7 2 4 N 18 7 3 0 3 A XX BA 17 compiled sequences including 4 TRANSCompel sites XX BS GCTTCTAAATTATCCATT; R00609; -5; 18;; p. BS GATTCATTCATCTGAAGC; R01263; -7; 18;; n. BS ACTTCATTATTATTCACC; R01264; -7; 18;; p. BS ATTTCCTAAATGATGTCA; R01265; -10; 18;; n. BS AATGCATTTTTGTCACT; R01266; 4; 18;; p. BS TAATCAAAATCCTTCCT; R01270; 4; 18;; p. BS ATTTCTTATTCATATTCA; R01273; -5; 18;; n. BS CCTTCATGAATATATATA; R01279; 7; 18;; n. BS TCTTCATGAATATAATGA; R02791; -6; 18;; n. BS TCTTCTTGTTTATACAAT; R03101; 6; 18;; n. BS CATGCATAAATGTACACA; R03191; -1; 18;; p. BS AATTCATACTGAATTCNN; R13387; 13; 18;; p. BS TCTTCTTGTTTATACAAT; R13388; -4; 18;; p. BS CATGCATAAATGTAGCAC; C00046, s00068; -1; 18;; p. BS AATTCATACTGAATTCCA; C00138, s00211; -3; 18;; n. BS TATCCATCAGCACAAGC; C00360, s00626; 2; 18;; p. BS AATTCATACTGAACCCCA; C00362, s00628; -10; 18;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00803 XX ID V$E2F_Q2 XX DT 02.06.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA E2F XX BF T01548; DP-1; Species: human, Homo sapiens. BF T00221; E2F; Species: human, Homo sapiens. BF T04056; E2F; Species: mouse, Mus musculus. BF T04747; E2F; Species: rat, Rattus norvegicus. BF T00232; E2F+E4; Species: human, Homo sapiens. BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. BF T01545; E2F-3a; Species: human, Homo sapiens. BF T01546; E2F-4; Species: human, Homo sapiens. XX P0 A C G T 01 0 4 12 0 G 02 0 2 14 0 G 03 0 16 0 0 C 04 0 0 16 0 G 05 0 10 6 0 S 06 1 2 11 2 G XX BA 16 compiled sequences including 4 TRANSCompel sites XX BS CCCGCG; R08635; 4; 6;; p. BS GGCGCG; R08798; 4; 6;; p. BS GGCGCG; R08817; 4; 6;; n. BS GGCGCG; R08861; 9; 6;; p. BS GCCGGT; R08862; 5; 6;; n. BS GGCGCG; R09550; 4; 6;; n. BS GGCGGG; R09584; 4; 6;; p. BS GGCGCC; R09603; 4; 6;; p. BS CGCGGT; R09604; -1; 6;; n. BS GGCGGG; R09627; 2; 6;; n. BS GGCGCC; R09628; 6; 6;; p. BS GGCGGG; R11777; 4; 6;; p. BS GGCGCG; C00119, s00175; 4; 6;; p. BS CGCGCG; C00121, s00178; 5; 6;; p. BS GGCGCA; C00121, s00179; 4; 6;; p. BS CGCGGG; C00132, s00200; 3; 6;; p. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00804 XX ID V$E2A_Q2 XX DT 02.06.2003 (created); dtc. DT 18.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA E2A XX BF T00204; E12; Species: human, Homo sapiens. BF T00675; E12; Species: rat, Rattus norvegicus. BF T01786; E12; Species: mouse, Mus musculus. BF T00207; E47; Species: human, Homo sapiens. BF T00674; E47; Species: rat, Rattus norvegicus. BF T01788; E47; Species: mouse, Mus musculus. BF T00432; ITF-1; Species: human, Homo sapiens. BF T00512; MRF4; Species: rat, Rattus norvegicus. BF T00525; MyoD; Species: human, Homo sapiens. BF T00526; MyoD; Species: mouse, Mus musculus. BF T00528; myogenin; Species: mouse, Mus musculus. BF T01532; myogenin; Species: rat, Rattus norvegicus. XX P0 A C G T 01 2 6 3 2 N 02 0 13 0 0 C 03 12 1 0 0 A 04 1 9 3 0 C 05 2 10 0 1 C 06 0 0 0 13 T 07 0 0 13 0 G 08 1 5 2 5 Y 09 1 8 0 4 Y 10 2 3 4 4 N 11 1 8 1 3 C 12 4 3 3 3 N 13 0 1 7 5 K 14 3 3 4 3 N XX BA 13 compiled sequences XX BS TCAGCTGTCATGCC; R00012; 3; 14;; p. BS CCACCTGTTCCAGG; R00014; -6; 14;; n. BS GCCCTTGGCTCCTG; R00018; 2; 14;; p. BS GCACCTGTCCCCTT; R00019; 7; 14;; p. BS CCACCTGCCTAGGA; R00881; -5; 14;; n. BS CCAACTGACCCTGT; R02452; 2; 14;; p. BS GCACCTGTTGCTTC; R03076; -3; 14;; n. BS TCACCTGCCTTAGA; R03109; -1; 14;; p. BS CCAGATGGCATTTA; R08512; -7; 14;; n. BS ACACCTGCTGCCTG; C00029, s00040; 2; 14;; p. BS CCACATGTCTGGGT; C00034, s00041; -5; 14;; n. BS ACACCTGCAGCAGC; C00031, s00044; 4; 14;; p. BS CCAGCTGCTGCAGG; C00032, s00046; -5; 14;; n. XX // AC M00805 XX ID V$LEF1_Q2 XX DT 02.06.2003 (created); dtc. DT 18.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA LEF1 XX BF T00930; LEF-1; Species: mouse, Mus musculus. BF T00802; LEF-1; Species: human, Homo sapiens. BF T02905; LEF-1; Species: human, Homo sapiens. BF T02963; LEF-1; Species: clawed frog, Xenopus laevis. BF T01389; LEF-1S; Species: mouse, Mus musculus. BF T01002; TCF-1; Species: human, Homo sapiens. BF T01109; TCF-1(P); Species: mouse, Mus musculus. BF T01111; TCF-3; Species: mouse, Mus musculus. XX P0 A C G T 01 3 0 0 10 T 02 0 13 0 0 C 03 13 0 0 0 A 04 13 0 0 0 A 05 11 0 1 1 A 06 0 2 11 0 G XX BA 13 compiled sequences including 1 TRANSCompel sites XX BS ACAAAG; R04278; 3; 6;; p. BS TCAAAG; R08576; 2; 6;; n. BS TCAAAG; R08589; 2; 6;; p. BS TCAAAG; R08591; 2; 6;; p. BS TCAAAG; R08631; 9; 6;; n. BS TCAAAC; R08636; 4; 6;; n. BS TCAAAC; R08649; 1; 6;; n. BS TCAAAG; R08820; 7; 6;; p. BS ACAAAG; R08821; 7; 6;; n. BS ACAATG; R08823; 7; 6;; n. BS TCAAAG; R08824; 7; 6;; p. BS TCAAGG; R13042; 5; 6;; p. BS TCAAAG; C00269, s00456; 2; 6;; p. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00806 XX ID V$NF1_Q6_01 XX DT 02.06.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA NF-1 XX BF T00174; CTF; Species: human, Homo sapiens. BF T00176; CTF-1; Species: human, Homo sapiens. BF T00177; CTF-2; Species: human, Homo sapiens. BF T00539; NF-1; Species: human, Homo sapiens. BF T00535; NF-1; Species: rat, Rattus norvegicus. BF T00537; NF-1; Species: mouse, Mus musculus. BF T00599; NF-1/L; Species: rat, Rattus norvegicus. BF T01167; NF-1A; Species: rat, Rattus norvegicus. BF T02331; NF-1A; Species: rat, Rattus norvegicus. XX P0 A C G T 01 21 19 9 30 N 02 14 12 12 41 T 03 17 11 42 9 G 04 17 6 47 9 G 05 25 24 15 15 N 06 16 21 14 28 N 07 23 20 16 20 N 08 21 25 20 13 N 09 15 20 20 24 N 10 23 10 13 33 N 11 1 4 69 5 G 12 1 74 2 2 C 13 4 74 1 0 C 14 73 2 1 3 A 15 65 0 8 6 A 16 19 14 27 19 N 17 31 18 18 12 N XX BA 79 compiled sequences including 2 TRANSCompel sites XX BS ACAATTTTTTGGCAAGA; R00078; -8; 17;; p. BS TCGGTTGGCAGCCAATG; R00079; -5; 17;; p. BS TACCATCCTTGCCAAAA; R00095; 2; 17;; n. BS ATGGAATGCAGCCAAAC; R00167; 7; 17;; p. BS TCTCGGCCTTGCCAAGT; R00229; -2; 17;; n. BS CTGGACTAGTGCCAATA; R00312; 3; 17;; p. BS AGGGCAGCGGGCCAACT; R00340; 2; 17;; n. BS TTGGACTATTTCCAATG; R00421; 3; 17;; n. BS CGGAGCCCGGGCCAATC; R00457; 1; 17;; p. BS TCCGCGCCAGCCAATGA; R00521; -8; 17;; p. BS CCAAGTACCCTTCAATC; R00594; -2; 17;; p. BS TTACTTTCTCGCCAACT; R00633; -3; 17;; p. BS GTGAGTAGTTGCCAAAA; R00724; 2; 17;; p. BS TCAGTTTAGTGCCAGAA; R00725; 2; 17;; p. BS TAGGTCGCCTGCCAAGG; R00726; 2; 17;; p. BS TATTGATCTTGCCAATC; R00727; 2; 17;; p. BS CAAAAGCGCTGCCAAAA; R00728; -1; 17;; n. BS TATGTTGTGTGCCAAGG; R00729; 2; 17;; p. BS CAAGTATCTTGCCAACA; R00730; 4; 17;; p. BS GTGGATTGCAGCCAAAG; R00731; 2; 17;; p. BS TCAGCTAGAAGCCAAAA; R00732; -1; 17;; n. BS CACATTTTGTGCCAAAA; R00733; -1; 17;; n. BS TGCCATGCGTGCCAAAT; R00734; 2; 17;; p. BS TGCACTGCTTGCCAACC; R00735; 2; 17;; p. BS ATCACTATGCGCCAACG; R00738; 2; 17;; p. BS GTTAAAACAAGCCAAAA; R00739; -1; 17;; n. BS TAAACCTTATGCCAAAT; R00740; -1; 17;; n. BS AACTTCTAAGGCCAACT; R00741; 2; 17;; p. BS TTGCAATAGTGCCAGCG; R00744; -1; 17;; n. BS AGTTGTACAAGCCAAGT; R00746; -1; 17;; n. BS CTCTGATTGGTCCAAGG; R00761; -5; 17;; p. BS TGAGCCAATCACCGAGC; R00768; -7; 17;; n. BS CTGGCACATGGCCAATG; R00789; -1; 17;; p. BS ATGGCTAATGGCCAATA; R00790; -1; 17;; p. BS ATGGCCAATAGCCAATA; R00791; -1; 17;; p. BS TTGGACATGAGCCAATA; R00792; 1; 17;; p. BS TTGATGTACTGCCAAGT; R00799; 1; 17;; n. BS GTAGGAAAGTCCCATAA; R00802; -8; 17;; n. BS TTGATGTACTGCCAAAA; R00803; 1; 17;; n. BS TTGGCTATATGCCAATA; R00809; 1; 17;; p. BS ATGGCTGCCAGCCAAGC; R00951; 3; 17;; p. BS GTGGAAAGCAGCCAAGG; R00953; 2; 17;; p. BS GCGAGCCAATGGGAAGG; R00956; -4; 17;; p. BS TTGGATAGATTCCAAAA; R01125; -2; 17;; n. BS CTGAATATGGGCCAAAC; R01136; -1; 17;; p. BS CCGGCTCAGGGCCAAGA; R01144; -1; 17;; p. BS TGGGCGCCTTGCCAGTT; R01162; 4; 17;; n. BS TTGGATTGAAGCCAATA; R01175; 1; 17;; p. BS TTGGATCATAGCCATGG; R01213; -3; 17;; n. BS ATGGCGCGCAGCCAATG; R01311; -1; 17;; p. BS CTCTGGCATTCCCTACA; R01322; -3; 17;; p. BS CTGGCCAGCAGCCAACC; R01367; 2; 17;; p. BS ATTAGCCAATGACAAGA; R01443; -7; 17;; n. BS AGATCCCCTGGCACATT; R01624; -5; 17;; p. BS AGGGCAGGGCGCCAAGC; R01752; 2; 17;; p. BS ATGGAATGCAGCCAAAC; R01774; -1; 17;; p. BS AGGGCAAGGTGCCCAGA; R02009; 1; 17;; n. BS TAGGCAATTTGCCAATA; R02045; 7; 17;; n. BS CCATATGCGTGCCATGA; R02705; 5; 17;; n. BS TGGGTCCTGCTCCAAGA; R02945; 3; 17;; n. BS GTTACTTCTCGCCAATG; R02990; 1; 17;; n. BS AAGGAAGGCAGCCAGCA; R02991; 3; 17;; n. BS TTCTTGGCAAGCCATGC; R03106; -3; 17;; p. BS AAGGACCACAGCCAACT; R03111; -1; 17;; p. BS CTGGCGGCAAGCCAAGA; R03127; 2; 17;; p. BS AAATGCGTTCGCCAAAA; R03434; -8; 17;; p. BS CTGGTCTGCAGCCAAGG; R03993; -1; 17;; p. BS CTGGGTACCCGCCAATC; R03994; -1; 17;; p. BS ACTGCCCACGGCCAAGG; R03995; -2; 17;; p. BS CTGGGGGGCGGCCAGCC; R04124; 4; 17;; n. BS TGCAAACTTGGCATAGC; R04187; 1; 17;; p. BS ATAGACCATAGCCAACT; R04482; -2; 17;; n. BS CTAGATACGTGCCAGTC; R04483; -2; 17;; n. BS ATGGAGAAGACCCAAAA; R04484; -1; 17;; p. BS TAAGCGCGTTGCCAAGC; R04515; 1; 17;; p. BS TTTCTGGCATGTCTGCC; R13218; 6; 17;; n. BS GCAGGTGCCAGCAAGAG; R13219; 7; 17;; p. BS GTGGACAGATGCCAAGG; C00001, s00002; -1; 17;; p. BS CTGGACAGTCGCCATGA; C00310, s00541; -3; 17;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00807 XX ID V$EGR_Q6 XX DT 02.06.2003 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA EGR XX BF T00241; Egr-1; Species: human, Homo sapiens. BF T00244; Egr-1; Species: mouse, Mus musculus. BF T04214; Egr-1; Species: mouse, Mus musculus. BF T01200; Egr-1; Species: rat, Rattus norvegicus. BF T00242; Egr-2; Species: human, Homo sapiens. BF T00243; Egr-3; Species: human, Homo sapiens. XX P0 A C G T 01 0 1 7 1 G 02 1 2 0 6 T 03 1 0 8 0 G 04 0 0 9 0 G 05 1 0 8 0 G 06 1 3 5 0 S 07 0 0 9 0 G 08 0 6 2 1 C 09 3 0 5 1 R 10 4 0 4 1 R 11 2 4 3 0 S XX BA 9 compiled sequences XX BS GCGGGGGCAAG; R01616; 7; 11;; p. BS GTGGGCGGGGC; R03721; 3; 11;; p. BS GCGGGGGCGAA; R04878; 5; 11;; n. BS TTGGGGGCGAG; R09545; -2; 11;; n. BS GTGGGGGTGGC; R09547; -2; 11;; n. BS GTAGGCGCTTC; R10929; -3; 11;; n. BS CAGGAAGCAGG; C00032, s00047; -2; 11;; p. BS GTGGGGGCGGC; C00216, s00362; -2; 11;; n. BS GTGGGCGGAAA; C00356, s00618; 1; 11;; p. XX // AC M00808 XX ID V$PAX_Q6 XX DT 02.06.2003 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA Pax XX BF T00677; Pax-1; Species: mouse, Mus musculus. BF T01823; Pax-2; Species: human, Homo sapiens. BF T00678; Pax-2a; Species: mouse, Mus musculus. BF T00680; Pax-3; Species: mouse, Mus musculus. BF T02983; Pax-4a; Species: mouse, Mus musculus. BF T03001; Pax-4a; Species: rat, Rattus norvegicus. BF T03003; Pax-4c; Species: rat, Rattus norvegicus. BF T00070; Pax-5; Species: human, Homo sapiens. BF T01201; Pax-5; Species: mouse, Mus musculus. BF T00681; Pax-6; Species: mouse, Mus musculus. BF T01828; Pax-8; Species: mouse, Mus musculus. BF T01829; Pax-8; Species: rat, Rattus norvegicus. BF T02898; Pax-8; Species: human, Homo sapiens. XX P0 A C G T 01 0 18 2 0 C 02 3 1 0 16 T 03 1 0 18 1 G 04 1 1 17 1 G 05 15 1 3 1 A 06 17 0 2 1 A 07 3 14 2 1 C 08 3 0 0 17 T 09 7 10 0 3 M 10 15 2 1 2 A 11 3 16 0 1 C XX BA 20 compiled sequences XX BS CTGGCACTTCC; R03013; 11; 11;; p. BS CAGTGGCTCAC; R08566; -7; 11;; n. BS CATGGAGTCCA; R08567; 20; 11;; p. BS CCGCTTATCTC; R08678; 6; 11;; p. BS GTGAAAAACTA; R08704; -3; 11;; n. BS GTGGAAAATGC; R08705; 14; 11;; p. BS CTGGAACTAAA; R08825; 6; 11;; p. BS CTGGAACTAAC; R08829; 6; 11;; p. BS CTGGAACTCAC; R08830; -1; 11;; n. BS CTGGAACTTAC; R08831; 6; 11;; p. BS CTGGAACTAAC; R08832; -1; 11;; n. BS CTGGAACTCAC; R08833; -1; 11;; n. BS CTGGAACTCAC; R08834; 6; 11;; p. BS CTGGAACTCAC; R08835; 6; 11;; p. BS CTGGAACTCAC; R08836; -1; 11;; n. BS CTGGAACTAAC; R08837; 6; 11;; p. BS CTGGAACTAAC; R08838; -1; 11;; n. BS CTGGAATTCAT; R08839; -1; 11;; n. BS CTGGAACTAAC; R08840; 6; 11;; p. BS CAAGGGGAAAC; C00228, s00384; 4; 11;; p. XX // AC M00809 XX ID V$FOX_Q2 XX DT 02.06.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA FOX XX BF T02445; FOXC2; Species: mouse, Mus musculus. BF T04166; FOXD3; Species: mouse, Mus musculus. BF T01133; FOXE1; Species: rat, Rattus norvegicus. BF T02461; FOXF1; Species: mouse, Mus musculus. BF T02465; FOXF2; Species: human, Homo sapiens. BF T02514; FOXF2; Species: mouse, Mus musculus. BF T04100; FOXH2; Species: mouse, Mus musculus. BF T02460; FOXJ1; Species: mouse, Mus musculus. BF T04169; FOXJ2 (long isoform); Species: human, Homo sapiens. BF T01088; FOXK2a; Species: human, Homo sapiens. BF T02517; FOXM1a; Species: human, Homo sapiens. BF T02516; FOXM1b; Species: human, Homo sapiens. BF T04206; FOXN2; Species: human, Homo sapiens. BF T02936; FOXO1a; Species: human, Homo sapiens. BF T02938; FOXO3a; Species: human, Homo sapiens. BF T03403; FOXO4; Species: human, Homo sapiens. XX P0 A C G T 01 0 3 6 4 K 02 8 0 1 4 A 03 3 2 1 7 T 04 0 0 1 12 T 05 4 0 9 0 G 06 0 0 0 13 T 07 1 0 1 11 T 08 0 0 2 11 T 09 7 0 6 0 R 10 0 4 0 9 T 11 0 1 0 12 T 12 2 0 1 10 T 13 7 0 1 5 W XX BA 13 compiled sequences including 1 TRANSCompel sites XX BS GATTATTTGCTTA; R05040; 1; 13;; p. BS CACTATTTACTTA; R05041; 4; 13;; n. BS CAGTGTTTGTCTT; R05042; 4; 13;; n. BS GAATGTTTACTAT; R05059; 1; 13;; n. BS TAAGGTATGTTTA; R05060; 5; 13;; n. BS TTTTATTTATTTA; R05061; 5; 13;; n. BS CAATGTTTATTAA; R05063; 1; 13;; p. BS GGCTGTTTATTTT; R05064; 1; 13;; p. BS GATTATTGACTTA; R09742; 6; 13;; n. BS TTTTGTTTGTTTT; R12960; 1; 13;; p. BS TTTTGTTTGTTTT; R12962; 1; 13;; p. BS GTTTGTTTGTTTG; R12963; 5; 13;; p. BS GATTGTGGATTGA; C00201, s00335; 2; 13;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00810 XX ID V$SRF_Q4 XX DT 02.06.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA SRF XX BF T00672; SRF; Species: human, Homo sapiens. BF T00764; SRF; Species: human, Homo sapiens. BF T00766; SRF; Species: rat, Rattus norvegicus. BF T05114; SRF; Species: mouse, Mus musculus. BF T03997; SRF (263 AA); Species: mouse, Mus musculus. BF T03996; SRF (400 AA); Species: mouse, Mus musculus. BF T03995; SRF (440 AA); Species: mouse, Mus musculus. BF T00765; SRF (504 AA); Species: mouse, Mus musculus. XX P0 A C G T 01 2 12 10 3 S 02 3 24 0 0 C 03 0 27 0 0 C 04 23 1 2 1 A 05 9 1 0 17 W 06 24 0 2 1 A 07 5 1 1 20 T 08 22 0 2 3 A 09 16 0 1 10 W 10 1 0 26 0 G 11 1 0 26 0 G 12 15 9 2 1 M 13 6 8 10 3 N 14 15 9 2 1 M 15 2 7 8 10 N 16 7 3 12 5 N 17 1 6 11 9 N 18 6 7 7 7 N XX BA 27 compiled sequences including 2 TRANSCompel sites XX BS GCCATTCATGGAGCCAAG; R00021; -7; 18;; n. BS ACCAAATAAGGCAAGGTG; R00024; -1; 18;; p. BS CCCAAATATGGCTCGAGA; R00036; 4; 18;; p. BS TCCATATAAGGACATGGA; R00038; -7; 18;; n. BS CACGCGATTGGCCCCGCG; R00039; -7; 18;; n. BS GCCATAAAAGGCAACTTT; R00040; 7; 18;; n. BS GCCAAATATGGGCATCTT; R00051; 1; 18;; n. BS ACCATGTAAGGAAGGGGA; R01759; -7; 18;; n. BS CCCATATATGGCCATGTA; R01795; 6; 18;; p. BS TCCATATAAGGCGCTGGG; R01796; -1; 18;; n. BS GCCATATAAGGAGCAGGA; R01797; 6; 18;; p. BS CACTAATTAGGAAACTTC; R01890; -1; 18;; p. BS GCCATAAAAGGATATGGC; R02907; -7; 18;; n. BS CCCAAATATGGAAATATT; R03375; 4; 18;; p. BS GCCATATGTGGACAGATG; R03412; 6; 18;; p. BS GCCGTATAAGGAGCGTCT; R03495; -2; 18;; n. BS CCCAAAGAAGGCGCTCCT; R03496; -2; 18;; n. BS CCCAAATATGGAGCCTGT; R09532; 10; 18;; p. BS GCCATATAAGGAGCGGCC; R09533; -1; 18;; p. BS GCCATAAAAGGAAACATT; R09534; -1; 18;; p. BS CCCATATAAAGAGATACA; R09535; -10; 18;; n. BS GACCAATGGGGCGGGGGC; R09536; -2; 18;; p. BS CCCATAAAAGGTTTTTCC; R09541; 4; 18;; p. BS TCCATATTAGGACATCTG; R09705; 6; 18;; p. BS CCCATATATGGGCAGAGC; R13375; -1; 18;; n. BS CCCAAATATGGCGACGGC; C00008, s00012; -1; 18;; p. BS CCCATATAAGAACAAGGG; C00127, s00190; -7; 18;; n. XX RN [1]; RE0023232. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0002 (2003). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00819 XX ID P$KNOX3_01 XX DT 07.07.2003 (created); abd. DT 07.07.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Knox3 XX BF T02063; KNOX3; Species: barley, Hordeum vulgare. XX P0 A C G T 01 3 12 11 11 N 02 14 11 9 3 N 03 5 12 7 13 N 04 4 14 16 3 S 05 0 3 1 33 T 06 1 1 35 0 G 07 37 0 0 0 A 08 1 35 0 1 C 09 15 8 13 1 R 10 4 8 18 7 N 11 9 6 13 9 N 12 8 4 10 15 N XX BA 37 selected sequences XX BS GATCTGACAGGG; R13460; 5; 12;; p. BS TGCTTGACGGAT; R13481; 21; 12;; p. BS ATGATGACAGAT; R13482; 19; 12;; p. BS TCTGTGACACCT; R13483; 7; 12;; p. BS GACGTGACACGG; R13484; 15; 12;; p. BS CGCGTGACGCTC; R13485; 17; 12;; p. BS TCTGTGACAGTG; R13486; 7; 12;; p. BS CCAACGACCGAT; R13487; 5; 12;; p. BS CCCATGACTAGA; R13488; 18; 12;; p. BS CAGCTGACGTGG; R13489; 19; 12;; p. BS TCTGTGACAGGA; R13490; 7; 12;; p. BS GATCCGACGTTT; R13491; 2; 12;; p. BS TGGGTGACAGGG; R13492; 18; 12;; p. BS CGTGTGACGCTC; R13493; 12; 12;; p. BS CCCTTGACGTTG; R13494; 15; 12;; p. BS GATCCGACCCTT; R13495; 2; 12;; p. BS GGACTGACAAAC; R13496; 11; 12;; p. BS AGACTGACCTGT; R13497; 8; 12;; p. BS GACGTGACAGTT; R13498; 13; 12;; p. BS TGACTGACGCAT; R13499; 14; 12;; p. BS GATCTGACCGCT; R13500; 5; 12;; p. BS CTGGTGACCGGC; R13501; 16; 12;; p. BS GATCTGACGTTT; R13502; 5; 12;; p. BS GACCTGACGTAT; R13503; 10; 12;; p. BS CAGGTGACAGGG; R13504; 19; 12;; p. BS CGTGTGACAGGA; R13505; 21; 12;; p. BS ACCCTAACCAAG; R13506; 17; 12;; p. BS TAAGTGATAGAG; R13507; 9; 12;; p. BS TTCGTGACAAGA; R13508; 18; 12;; p. BS CATGTGACAGGA; R13509; 21; 12;; p. BS TCCTGCACGCCA; R13510; 16; 12;; p. BS CCGGTGACCGCT; R13511; 5; 12;; p. BS GATCTGACGTTG; R13512; 5; 12;; p. BS TCGATGACGGAT; R13513; 22; 12;; p. BS GACGTGACAGGA; R13514; 20; 12;; p. BS TCTCTGACCGCT; R13515; 7; 12;; p. BS CGCCTGAAGCCA; R13516; 10; 12;; p. XX CC selected in DNA-binding site selection assay from a pool of 65bp fragments with a core of 20 random bp [1]; protein binds as monomer [1] XX RN [1]; RE0022890. RX PUBMED: 9180261. RA Krusell L., Rasmussen I., Gausing K. RT DNA binding sites recognised in vitro by a knotted class 1 homeodomain protein encoded by the hooded gene, k, in barley (Hordeum vulgare). RL FEBS Lett. 408:25-29 (1997). XX // AC M00820 XX ID P$HAHB4_01 XX DT 07.07.2003 (created); abd. DT 07.07.2003 (updated); abd. CO Copyright (C), Biobase GmbH. XX NA HAHB-4 XX BF T04073; HAHB-4; Species: sunflower, Helianthus annuus. XX P0 A C G T 01 1 0 0 24 T 02 25 0 0 0 A 03 25 0 0 0 A 04 0 0 0 25 T 05 7 0 14 4 R 06 25 0 0 0 A 07 0 0 0 25 T 08 3 1 3 18 T 09 6 5 14 0 G XX BA 25 selected sequences XX BS TAATGATTC; R13517; 1; 9;; p. BS TAATGATTA; R13518; 1; 9;; p. BS TAATGATCA; R13519; 1; 9;; p. BS TAATGATTA; R13520; 1; 9;; p. BS TAATGATTG; R13521; 1; 9;; p. BS TAATAATAA; R13522; 1; 9;; p. BS TAATTATTC; R13523; 1; 9;; p. BS TAATGATGC; R13524; 1; 9;; p. BS TAATAATTG; R13525; 1; 9;; p. BS TAATGATAC; R13526; 1; 9;; p. BS TAATGATTG; R13527; 1; 9;; p. BS AAATGATTG; R13528; 1; 9;; p. BS TAATAATTG; R13529; 1; 9;; p. BS TAATAATTG; R13530; 1; 9;; p. BS TAATAATTA; R13531; 1; 9;; p. BS TAATAATTG; R13532; 1; 9;; p. BS TAATTATTA; R13533; 1; 9;; p. BS TAATTATGG; R13534; 1; 9;; p. BS TAATGATTG; R13535; 1; 9;; p. BS TAATAATTG; R13536; 1; 9;; p. BS TAATGATTG; R13537; 1; 9;; p. BS TAATGATTG; R13538; 1; 9;; p. BS TAATGATAC; R13539; 1; 9;; p. BS TAATGATTG; R13540; 1; 9;; p. BS TAATTATGG; R13541; 1; 9;; p. XX CC selected from 70-mer double-stranded oligonucleotides, containing a 9-bp central core with random sequences at 5 positions NNATNATNN, 2 or 3 rounds of selection [1] XX RN [1]; RE0022842. RX PUBMED: 10377247. RA Palena C. M., Gonzalez D. H., Chan R. L. RT A monomer-dimer equilibrium modulates the interaction of the sunflower homeodomain leucine-zipper protein Hahb-4 with DNA. RL J. Biochem. 341 ( Pt 1):81-87 (1999). XX // AC M00821 XX ID V$NRF2_Q4 XX DT 29.08.2003 (created); vma. DT 31.08.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Nrf2 XX DE heterodimer containing Nrf2 XX BF T01443; Nrf2; Species: human, Homo sapiens. BF T04938; Nrf2; Species: mouse, Mus musculus. BF T05668; Nrf2; Species: rat, Rattus norvegicus. BF T05576; Nrf2:MafK; Species: mouse, Mus musculus. BF T05666; Nrf2:MafK; Species: rat, Rattus norvegicus. XX P0 A C G T 01 3 4 1 2 N 02 1 1 1 7 T 03 0 2 8 0 G 04 2 7 0 1 C 05 2 0 1 7 T 06 1 1 7 1 G 07 8 0 0 2 A 08 0 0 8 2 G 09 0 0 0 10 T 10 0 10 0 0 C 11 10 0 0 0 A 12 0 2 3 5 K 13 1 2 4 3 N XX BA 10 compiled genomic binding sites XX BS ATGATGAGTCATG; R02420; 9; 13;; p. BS TCGCTGAGTCATG; R13440; 8; 13;; p. BS CAGAGATGTCATA; R13577; 3; 13;; p. BS CTCCAGATTCAGT; R13578; 1; 13;; p. BS GTGTTGAGTCAGC; R13579; 1; 13;; p. BS TTGCTGATTCATT; R13587; 6; 13;; p. BS CGCCACAGTCAGC; R13588; 7; 13;; p. BS CTGCTGAGTCACT; R13589; 9; 13;; n. BS ATGCTTTGTCATG; R13590; 4; 13;; n. BS ATGCTGAGTCACG; R14173; 4; 13;; p. XX CC second component of the heterodimer not in all cases identified, but usually small Maf protein (e.g. MafK) XX // AC M00912 XX ID V$CEBP_Q2_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA C_EBP XX BF T00104; C/EBPalpha; Species: mouse, Mus musculus. BF T00108; C/EBPalpha; Species: rat, Rattus norvegicus. BF T00105; C/EBPalpha; Species: human, Homo sapiens. BF T02027; C/EBPalpha(p30); Species: rat, Rattus norvegicus. BF T00459; C/EBPbeta(LAP); Species: rat, Rattus norvegicus. BF T01420; C/EBPbeta(p20); Species: rat, Rattus norvegicus. BF T02105; C/EBPbeta(p34); Species: rat, Rattus norvegicus. BF T00017; C/EBPbeta(p35); Species: mouse, Mus musculus. BF T05501; C/EBPbeta(p35); Species: mouse, Mus musculus. BF T00583; C/EBPdelta; Species: human, Homo sapiens. BF T01114; C/EBPdelta; Species: mouse, Mus musculus. BF T00109; C/EBPdelta; Species: rat, Rattus norvegicus. BF T00171; C/EBPepsilon; Species: rat, Rattus norvegicus. BF T00216; C/EBPgamma; Species: mouse, Mus musculus. BF T00581; NF-IL6-2; Species: human, Homo sapiens. XX P0 A C G T 01 32 19 18 20 N 02 0 1 0 88 T 03 1 0 9 79 T 04 24 2 45 18 R 05 1 88 0 0 C 06 38 23 10 18 N 07 20 35 8 26 N 08 58 21 5 5 A 09 68 3 10 8 A 10 8 24 18 39 N 11 19 25 14 31 N 12 27 25 8 29 N XX BA 89 compiled sequences XX BS GTTACAGCATCC; R00082; 5; 12;; p. BS GTGACACTACTT; R00083; -1; 12;; p. BS ATTACAAAATCA; R00089; 3; 12;; n. BS ATTTCATTGGTT; R00090; 1; 12;; n. BS TTTAACCAATAA; R00093; -2; 12;; n. BS ATTACAAAATCA; R00097; -2; 12;; n. BS ATTTCCCAACCT; R00111; 12; 12;; p. BS TTTGCGCCACTA; R00239; -1; 12;; n. BS CTTTCACAATCT; R00422; 5; 12;; p. BS CTTGCTTCACAC; R00627; 3; 12;; n. BS ATTTCGTAATTC; R00629; -1; 12;; n. BS CTTTCCAATCAA; R00631; 5; 12;; n. BS TTTACACAATGT; R00632; 1; 12;; p. BS TTTGCTGACGCA; R00637; 8; 12;; p. BS ATTACAAAATGC; R00837; 2; 12;; n. BS ATTGCTCAATTC; R00847; 4; 12;; n. BS ATTGCTTAGTTC; R01154; 6; 12;; n. BS CTTACGTCAGAG; R01217; -1; 12;; p. BS CTTGCAAAACCA; R01235; 5; 12;; n. BS CTTTCCACACCC; R01408; 5; 12;; p. BS GTTGCCCAATCG; R01456; 4; 12;; n. BS CTTACTCAACAT; R01463; 10; 12;; p. BS ATTGCAAAAGGT; R01613; 2; 12;; n. BS CTGACCTAACAC; R01686; 6; 12;; n. BS CTTACACAACGT; R01688; 3; 12;; n. BS TTTGCATCAGCA; R01689; 4; 12;; p. BS CTTTCAGAAATT; R01700; -2; 12;; p. BS ATTTCTCAACTT; R01839; 3; 12;; n. BS ATTTCCTCAGCC; R01841; 5; 12;; n. BS TTTGCTCACTGA; R02046; 5; 12;; p. BS TTGGCACAGACC; R02056; 5; 12;; n. BS CTTGCATAATCC; R02457; 3; 12;; n. BS ATTGCTCCATTA; R02458; 5; 12;; p. BS TTTGCGCAAGAC; R02460; 8; 12;; p. BS GTGGCACAATCT; R02461; 1; 12;; n. BS ATTTCTCAATAC; R02468; 21; 12;; n. BS GTTGCAACATAA; R02564; -4; 12;; n. BS GTTGCATGGAGA; R02737; 7; 12;; p. BS CTTACATAAGAG; R02739; 2; 12;; p. BS ATTGCTGGGAGT; R02740; -3; 12;; n. BS TTAACCTAATCT; R02744; 4; 12;; n. BS GTTGCATGGTGC; R02745; 5; 12;; n. BS TCTGCCTAATCA; R02746; -4; 12;; p. BS ATTCCACGATTT; R02908; 8; 12;; n. BS CTTACTGCAGGA; R03068; 3; 12;; n. BS CTTGCCCCAGTG; R03069; 7; 12;; p. BS GTTACACAAGCA; R03128; 5; 12;; p. BS ATTGCACAGATA; R03129; -2; 12;; n. BS CTTCCAAATTCT; R03130; -4; 12;; n. BS GTTGCGCCACGA; R03135; 10; 12;; p. BS ATTGCACAATCT; R03136; 8; 12;; p. BS ATTGCAGATGCG; R03139; 9; 12;; p. BS CTTACCTCAGCC; R03141; -7; 12;; n. BS TTTGCTAAACTC; R03143; 6; 12;; p. BS TTTACCAATCTC; R03147; 5; 12;; p. BS TTTGCAATAGAA; R03148; 7; 12;; p. BS GTTTCCCCATGT; R03149; 6; 12;; p. BS ATTACATCACTG; R03152; 7; 12;; n. BS GTTACGTCATTT; R03153; 8; 12;; p. BS TTTTCCAATTTC; R03237; -4; 12;; n. BS TTTGCTCATATA; R03243; 8; 12;; n. BS GTTGCACAGGTA; R03244; -1; 12;; n. BS TTTTCCAATTTC; R03246; -4; 12;; n. BS TTTGCTTGAATA; R03251; 8; 12;; n. BS ATTGCATAGGTA; R03252; -1; 12;; n. BS GTGGCACAATCT; R03414; 7; 12;; n. BS ATTGCGTCATTT; R04044; 2; 12;; p. BS ATGTCCTAATAT; R04047; 11; 12;; n. BS GTTACACAACTG; R04480; -3; 12;; p. BS ATTGCCCAACTC; R04494; 4; 12;; n. BS ATTGCTTAATAT; R04505; 1; 12;; n. BS GTTGCCAAGCTC; R04515; 8; 12;; p. BS ATTTCGTAACTA; R05074; 13; 12;; n. BS TTTGCTTCAGAC; R08086; 5; 12;; p. BS CTTTCCAAATGT; R08089; 1; 12;; n. BS GTTGCTGAAAAG; R08090; 1; 12;; n. BS TTGACCAAACAA; R08096; 21; 12;; p. BS ATTGCGCCATCT; R08105; 3; 12;; n. BS CTGACATAACAT; R08112; 10; 12;; n. BS ATTGCAGCTCTC; R08113; 15; 12;; p. BS TTGACTAAACTT; R08116; 4; 12;; n. BS ATTGCCCCATCC; R08123; -4; 12;; n. BS GTTACCAAATTT; R08878; 5; 12;; p. BS CTTTCCCAATAT; R13167; 8; 12;; p. BS ATTGCAAAAGGA; R13168; 4; 12;; n. BS GTTGCACAATGA; R13169; 5; 12;; n. BS ATTGCATTATTT; R13310; 6; 12;; n. BS ATTGCGCTCCAC; R13311; 5; 12;; n. BS ATTTCACAATCA; R13567; -3; 12;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00913 XX ID V$MYB_Q5_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA MYB XX BF T01587; B-Myb; Species: mouse, Mus musculus. BF T00137; c-Myb; Species: human, Homo sapiens. BF T00138; c-Myb; Species: mouse, Mus musculus. BF T00139; c-Myb; Species: chick, Gallus gallus. XX P0 A C G T 01 3 10 5 8 N 02 25 1 0 0 A 03 26 0 0 0 A 04 0 23 2 1 C 05 2 5 7 12 N 06 5 2 18 1 G 07 6 8 6 6 N 08 5 15 4 2 C 09 7 7 6 6 N XX BA 26 compiled sequences including 5 TRANSCompel sites XX BS GAAGTATGC; R01847; 15; 9;; n. BS TAACTGACA; R01849; 7; 9;; p. BS CAACTGGTA; R02392; 8; 9;; n. BS GAACTGTCT; R03999; 9; 9;; n. BS CAACCGGCG; R04000; 6; 9;; n. BS GAACAGAAA; R04001; 13; 9;; n. BS CAACGGAGT; R04002; 6; 9;; n. BS CAATACAAG; R04082; -5; 9;; n. BS TCACCATCT; R04174; -3; 9;; n. BS TAACTGCCG; R04176; 3; 9;; n. BS GAACTTGGA; R04177; 15; 9;; p. BS AAAGCGTTT; R04178; 6; 9;; p. BS CAACTGCCC; R04179; 6; 9;; p. BS TAACGACCC; R04180; 19; 9;; n. BS AAACGGGCG; R04181; 10; 9;; p. BS CAACTGGGC; R04182; 1; 9;; n. BS CAACTGCCT; R04183; 5; 9;; p. BS GAACTGGCG; R04184; 6; 9;; n. BS TAACTATAC; R04340; 1; 9;; p. BS TAACCCTAA; R04341; 1; 9;; p. BS CAACGGCCA; R13158; 1; 9;; n. BS TAACGGACC; C00135, s00205; -3; 9;; n. BS CAACGGCCT; C00176, s00286; 1; 9;; p. BS TAACGACAG; C00181, s00294; 1; 9;; p. BS CAACTGACC; C00229, s00386; 1; 9;; p. BS AAACCGCCA; C00240, s00408; -3; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00915 XX ID V$AP2_Q6_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA AP-2 XX BF T00034; AP-2; Species: rat, Rattus norvegicus. BF T00952; AP-2; Species: clawed frog, Xenopus laevis. BF T00033; AP-2alpha; Species: mouse, Mus musculus. BF T00035; AP-2alphaA; Species: human, Homo sapiens. BF T02466; AP-2alphaB; Species: human, Homo sapiens. BF T02467; AP-2beta; Species: human, Homo sapiens. BF T02469; AP-2beta; Species: mouse, Mus musculus. BF T02468; AP-2gamma; Species: human, Homo sapiens. BF T02470; AP-2gamma; Species: mouse, Mus musculus. XX P0 A C G T 01 0 12 8 4 S 02 5 8 8 3 N 03 2 8 10 4 N 04 1 10 7 6 N 05 0 22 1 1 C 06 2 20 1 1 C 07 2 10 7 5 N 08 1 18 4 1 C 09 12 5 5 2 A 10 0 1 23 0 G 11 0 2 22 0 G 12 0 22 2 0 C 13 3 8 7 6 N XX BA 24 compiled sequences including 1 TRANSCompel sites XX BS GAGTCCGCAGGCG; R00958; 1; 13;; n. BS CCCGCCGCCGGCC; R00959; 1; 13;; p. BS CGTCCCCGAGGCG; R01032; 9; 13;; p. BS CGGGCCGCGGGCG; R01034; 2; 13;; n. BS GAAACACCCGGCC; R01035; 3; 13;; n. BS GAATCCCCAGCCC; R01054; -4; 13;; n. BS CCGCCCACCGGCC; R01157; 6; 13;; p. BS GGGTCCTCAGCCG; R01158; -3; 13;; n. BS CAGCCCGCCGGCG; R01261; -1; 13;; p. BS CTCCCCAGTGGCT; R01563; -1; 13;; p. BS CCCGCCTCAGGCT; R02425; 2; 13;; p. BS CCGTCCTCAGGCG; R02702; 4; 13;; p. BS GGGCCTGCAGGCT; R03674; -1; 13;; n. BS TCTCCCCCGCGCC; R04035; -2; 13;; p. BS GCCTGGCCAGGCC; R04379; 19; 13;; p. BS GGCGCCCCAGGCC; R04414; 6; 13;; n. BS CGGGCCCCGGGCA; R04415; -2; 13;; p. BS CCGCCCTGCGGCT; R04670; 8; 13;; p. BS CCCCTCCCAGGGA; R04999; 10; 13;; p. BS TACCCCCATGGCC; R05002; 8; 13;; n. BS TTTGCCTGGGGCT; R08502; 1; 13;; p. BS TGCCCAGCAGGCT; R08882; -1; 13;; n. BS GGGGCCGTGGGCG; R13305; 3; 13;; n. BS CTTTCCCCAGGGA; C00346, s00603; -4; 13;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00916 XX ID V$CREB_Q2_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA CREB XX BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T01307; CREB; Species: hamster. BF T01380; CREB; Species: mink, Mustela vison. BF T01385; CREB; Species: cattle, Bos taurus. BF T02361; CREBbeta; Species: mouse, Mus musculus. BF T01314; CREMalpha; Species: mouse, Mus musculus. BF T01803; CREMalpha; Species: human, Homo sapiens. BF T01315; CREMbeta; Species: mouse, Mus musculus. BF T01316; CREMgamma; Species: mouse, Mus musculus. BF T01309; CREMtau; Species: mouse, Mus musculus. BF T01919; CREMtau; Species: rat, Rattus norvegicus. BF T02108; CREMtau1; Species: mouse, Mus musculus. BF T02109; CREMtau2; Species: mouse, Mus musculus. BF T01602; CREMtaualpha; Species: mouse, Mus musculus. BF T00166; deltaCREB; Species: human, Homo sapiens. BF T00165; deltaCREB; Species: rat, Rattus norvegicus. XX P0 A C G T 01 5 8 13 2 N 02 6 5 10 7 N 03 5 3 3 17 T 04 3 3 10 12 K 05 19 0 6 3 A 06 0 28 0 0 C 07 4 1 23 0 G 08 0 0 0 28 T 09 0 27 1 0 C 10 27 1 0 0 A 11 1 8 10 9 N 12 3 13 6 6 N 13 7 2 12 7 N 14 2 11 11 4 S XX BA 28 compiled sequences XX BS CTACACGTCAGCTG; R00309; -4; 14;; n. BS AACTACGTCATCTC; R00322; -2; 14;; p. BS GCTTTCGTCACAGG; R00343; 5; 14;; p. BS CGTTACGTCACTTC; R00352; -4; 14;; n. BS CGTTACGTCATTTT; R00356; -2; 14;; p. BS CGTTACGTCATTTT; R00366; -4; 14;; n. BS CATTGCGTCACCTC; R00454; -3; 14;; n. BS CGTGACGTCACCCG; R00455; -1; 14;; p. BS GTAAACGTCACGGG; R00471; -3; 14;; n. BS GGACACGTCAGGGC; R00779; 3; 14;; n. BS GTTGTCGTCAACGC; R00780; 4; 14;; n. BS CCTTACGTCAGAGG; R01215; -2; 14;; p. BS GCTGACGTCAGAGA; R01358; 1; 14;; p. BS GTGTTCGTCATGGG; R01534; 3; 14;; n. BS GGACACGTGCTCAG; R02378; 4; 14;; n. BS CCGTACGTCACGGC; R02906; 12; 14;; p. BS AGATGCGTCATCTC; R03104; -3; 14;; p. BS TTCTGCGTCAGCGC; R03401; -2; 14;; p. BS AATAGCATCATCAG; R03694; 9; 14;; n. BS AATGACATCACGGC; R04029; 1; 14;; p. BS GGTGACATCATGGG; R04032; -2; 14;; p. BS GGTTGCGTCAGCAA; R04045; -4; 14;; n. BS GATGACATCAGTAC; R04882; 6; 14;; p. BS GATGACGTCAGTAC; R04884; 6; 14;; p. BS ATGGACGTCATCAG; R09519; 2; 14;; n. BS TTTGACGTCAGCCT; R09520; 8; 14;; p. BS GCCAGCGTCACCAG; R13066; 9; 14;; n. BS GGTGACCTCAGTGT; R13230; -1; 14;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00917 XX ID V$CREB_Q4_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA CREB XX BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T01307; CREB; Species: hamster. BF T01380; CREB; Species: mink, Mustela vison. BF T01385; CREB; Species: cattle, Bos taurus. BF T02361; CREBbeta; Species: mouse, Mus musculus. BF T01314; CREMalpha; Species: mouse, Mus musculus. BF T01803; CREMalpha; Species: human, Homo sapiens. BF T01315; CREMbeta; Species: mouse, Mus musculus. BF T01316; CREMgamma; Species: mouse, Mus musculus. BF T01309; CREMtau; Species: mouse, Mus musculus. BF T01919; CREMtau; Species: rat, Rattus norvegicus. BF T02108; CREMtau1; Species: mouse, Mus musculus. BF T02109; CREMtau2; Species: mouse, Mus musculus. BF T01602; CREMtaualpha; Species: mouse, Mus musculus. BF T00166; deltaCREB; Species: human, Homo sapiens. BF T00165; deltaCREB; Species: rat, Rattus norvegicus. XX P0 A C G T 01 10 20 4 6 C 02 6 11 17 6 N 03 14 12 13 1 N 04 0 0 0 40 T 05 0 1 39 0 G 06 40 0 0 0 A 07 0 32 2 6 C 08 0 1 39 0 G 09 4 9 0 27 T 10 14 19 3 4 M 11 23 4 7 6 A XX BA 40 compiled sequences including 5 TRANSCompel sites XX BS GCGTGACGTCA; R00288; 4; 11;; p. BS AGCTGACGTGT; R00309; -3; 11;; p. BS AGATGACGTAG; R00322; 1; 11;; n. BS CTGTGACGAAA; R00343; 7; 11;; n. BS AAGTGACGTAA; R00352; -3; 11;; p. BS AAATGACGTAA; R00356; 1; 11;; n. BS AAATGACGTAA; R00366; -3; 11;; p. BS AGGTGACGCAA; R00454; -2; 11;; p. BS CCGTGACGTCA; R00456; -3; 11;; p. BS CCGTGACGTTT; R00471; -2; 11;; p. BS CCCTGACGTGT; R00779; 4; 11;; p. BS CGTTGACGACA; R00780; 5; 11;; p. BS CTCTGACGTCA; R00963; 6; 11;; p. BS AGATGACGTCA; R01196; 1; 11;; n. BS CTCTGACGTAA; R01215; 1; 11;; n. BS GGCTGACGTCA; R01358; -1; 11;; p. BS CCATGACGAAC; R01534; 4; 11;; p. BS CTCTGAGCACG; R02378; 2; 11;; p. BS CTGTGACGCTG; R02710; -3; 11;; p. BS CCGTGACGTAC; R02906; 14; 11;; n. BS AGATGACGCAT; R03104; -1; 11;; n. BS CGCTGACGCAG; R03401; 1; 11;; n. BS TGATGATGCTA; R03694; 10; 11;; p. BS AGATGATGTCA; R03738; 1; 11;; n. BS CCGTGATGTCA; R04029; 3; 11;; n. BS CCATGATGTCA; R04032; 1; 11;; n. BS TGCTGACGCAA; R04045; -3; 11;; p. BS TACTGATGTCA; R04882; 8; 11;; n. BS CGATGACGTCA; R04884; 5; 11;; p. BS TCATGACGTCT; R04963; 6; 11;; p. BS CGATGACGCCA; R09065; 9; 11;; p. BS TGATGACGTCC; R09519; 3; 11;; p. BS GGCTGACGTCA; R09520; 10; 11;; n. BS TGGTGACGCTG; R13066; 10; 11;; p. BS CACTGAGGTCA; R13230; 1; 11;; p. BS CCATGACGTCA; C00088, s00135; 1; 11;; n. BS ACGTCATGTCT; C00197, s00325; 3; 11;; n. BS CGGTGACGTAG; C00209, s00349; -1; 11;; n. BS CTCTGACGCAG; C00222, s00374; -1; 11;; n. BS GAGTGACGTGC; C00225, s00378; 2; 11;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00918 XX ID V$E2F_Q3_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA E2F XX BF T01548; DP-1; Species: human, Homo sapiens. BF T00221; E2F; Species: human, Homo sapiens. BF T04056; E2F; Species: mouse, Mus musculus. BF T04747; E2F; Species: rat, Rattus norvegicus. BF T00232; E2F+E4; Species: human, Homo sapiens. BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. BF T01545; E2F-3a; Species: human, Homo sapiens. BF T01546; E2F-4; Species: human, Homo sapiens. XX P0 A C G T 01 1 4 1 19 T 02 1 0 2 22 T 03 1 3 1 20 T 04 0 10 15 0 S 05 0 4 21 0 G 06 0 25 0 0 C 07 0 0 25 0 G 08 0 15 10 0 S 09 1 5 15 4 G XX BA 25 compiled sequences including 1 TRANSCompel sites XX BS TTTCGCGCG; R00310; 5; 9;; p. BS TTCCGCGCG; R04352; 1; 9;; p. BS TTTCGCGCG; R08507; 2; 9;; p. BS TTTGGCGCA; R08508; 1; 9;; p. BS TTTCCCGCG; R08635; 1; 9;; p. BS TTTCGCGCT; R08679; 1; 9;; p. BS ATTGGCGCG; R08798; 1; 9;; p. BS TTTGGCGCG; R08811; 4; 9;; n. BS TTTGGCGCG; R08817; 4; 9;; n. BS CGGGGCGGC; R08861; 3; 9;; p. BS TAAGCCGGT; R08862; 5; 9;; n. BS TTTGGCGGG; R09542; 1; 9;; p. BS TTTGGCGGG; R09543; 1; 9;; p. BS TTTGGCGCG; R09550; 4; 9;; n. BS TTTGGCGGG; R09584; 1; 9;; p. BS GTTCGCGGG; R09586; 2; 9;; p. BS CTTGGCGGG; R09599; 1; 9;; p. BS TTTGGCGCC; R09603; 1; 9;; p. BS TTTCGCGGT; R09604; -1; 9;; n. BS CTCCCCGGC; R09627; 13; 9;; p. BS CGTGGCGCC; R09628; 3; 9;; p. BS TTTCGCGCC; R09798; 1; 9;; p. BS TTTGGCGGG; R11777; 1; 9;; p. BS TTTCCCGCT; R13183; 12; 9;; p. BS TTCGGCGCG; C00119, s00175; 1; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00919 XX ID V$E2F_Q4_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA E2F XX BF T01548; DP-1; Species: human, Homo sapiens. BF T00221; E2F; Species: human, Homo sapiens. BF T04056; E2F; Species: mouse, Mus musculus. BF T04747; E2F; Species: rat, Rattus norvegicus. BF T00232; E2F+E4; Species: human, Homo sapiens. BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. BF T01545; E2F-3a; Species: human, Homo sapiens. BF T01546; E2F-4; Species: human, Homo sapiens. XX P0 A C G T 01 1 7 11 12 N 02 5 20 5 1 C 03 0 12 19 0 S 04 0 31 0 0 C 05 0 0 31 0 G 06 0 26 5 0 C 07 0 18 12 1 S 08 26 1 3 1 A 09 28 2 0 1 A 10 22 1 6 2 A 11 8 9 6 8 N XX BA 31 compiled sequences including 1 TRANSCompel sites XX BS CCGCGCGAAAA; R00310; 4; 11;; n. BS TCGCGCCAAAC; R01801; 3; 11;; p. BS GCGCGCGGAAC; R04352; -1; 11;; n. BS GCGCGCGAAAA; R08507; 1; 11;; n. BS CTGCGCCAAAG; R08508; -1; 11;; n. BS CCGCGGGAAAA; R08635; -1; 11;; n. BS GAGCGCGAAAG; R08679; -1; 11;; n. BS TCGCGCCAATC; R08798; -1; 11;; n. BS CAGCGCTAAGA; R08807; -2; 11;; p. BS TCGCGCCAAAC; R08811; 3; 11;; p. BS TCGCGCCAAAC; R08817; 3; 11;; p. BS CGCCGCCCCGA; R08861; 2; 11;; n. BS GACCGGCTTAA; R08862; 4; 11;; p. BS TCCCGCCAAGC; R08900; -2; 11;; n. BS CCCCGCCAAAC; R09542; -1; 11;; n. BS CCCCGCCAAAT; R09543; -1; 11;; n. BS TCCCGCCAAAT; R09584; -1; 11;; n. BS GCCCGCGAACT; R09586; 1; 11;; n. BS TCCCGCCAAGT; R09599; -1; 11;; n. BS TCCCGCCAAAG; R09600; -1; 11;; n. BS TCGCGCCAAAT; R09601; -1; 11;; n. BS TGGCGCCAAAC; R09603; -1; 11;; n. BS TACCGCGAAAG; R09604; -2; 11;; p. BS GCGCGGGAATT; R09626; -2; 11;; p. BS AGCCGGGGAGC; R09627; 12; 11;; n. BS GGGCGCCACGA; R09628; 2; 11;; n. BS GGGCGCGAAAA; R09798; -1; 11;; n. BS GCGCGCGAAAT; R09803; -1; 11;; n. BS GCCCGCCAAAG; R11777; -1; 11;; n. BS TAGCGGGAAAT; R13183; 11; 11;; n. BS GCGCGCCGAAG; C00119, s00175; -1; 11;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00920 XX ID V$E2F_Q6_01 XX DT 31.08.2003 (created); dtc. DT 12.10.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA E2F XX BF T01548; DP-1; Species: human, Homo sapiens. BF T00221; E2F; Species: human, Homo sapiens. BF T04056; E2F; Species: mouse, Mus musculus. BF T04747; E2F; Species: rat, Rattus norvegicus. BF T00232; E2F+E4; Species: human, Homo sapiens. BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. BF T05204; E2F-1:DP-1; Species: human, Homo sapiens. BF T01545; E2F-3a; Species: human, Homo sapiens. BF T01546; E2F-4; Species: human, Homo sapiens. BF T06110; E2F-7; Species: human, Homo sapiens. BF T06112; E2F-7; Species: mouse, Mus musculus. XX P0 A C G T 01 11 11 4 13 N 02 1 8 14 16 K 03 6 26 6 1 C 04 0 12 26 1 G 05 0 39 0 0 C 06 0 0 39 0 G 07 0 36 3 0 C 08 0 20 16 3 S 09 33 0 6 0 A 10 34 3 2 0 A 11 27 2 8 2 A 12 9 14 7 9 N XX BA 39 compiled sequences including 1 TRANSCompel sites XX BS ACCGCGCGAAAA; R00310; 4; 12;; n. BS TTCCCGCGAAAA; R00311; 4; 12;; n. BS TAAGCGCGAAAA; R00326; 5; 12;; p. BS AGGGCGCGAAAC; R00329; 4; 12;; p. BS ACCGCGCGAAAA; R00330; -3; 12;; p. BS TTCGCGCCAAAC; R01801; 2; 12;; p. BS TTCCCGCCAAGC; R01851; -5; 12;; n. BS ATCGCGCTGAGT; R01852; 2; 12;; p. BS CGGGCGCCAAAC; R04349; -1; 12;; n. BS TGCGCGCGGAAC; R04352; -1; 12;; n. BS AGCGCGCGAAAA; R08507; 1; 12;; n. BS CCTGCGCCAAAG; R08508; -1; 12;; n. BS ACCGCGGGAAAA; R08635; -1; 12;; n. BS CTCCCGCCAGGC; R08663; -2; 12;; p. BS AGAGCGCGAAAG; R08679; -1; 12;; n. BS TTCGCGCCAATC; R08798; -1; 12;; n. BS GCAGCGCTAAGA; R08807; -3; 12;; p. BS TTCGCGCCAAAC; R08811; 2; 12;; p. BS TTCGCGCCAAAC; R08817; 2; 12;; p. BS ACCGCGCCGCCC; R08861; 5; 12;; n. BS CGGTCGCTGCAG; R08862; -4; 12;; n. BS TTCCCGCCAAGC; R08900; -2; 12;; n. BS ACCCCGCCAAAC; R09542; -1; 12;; n. BS CCCCCGCCAAAT; R09543; -1; 12;; n. BS CTCCCGCCAAAT; R09584; -1; 12;; n. BS TGCCCGCGAACT; R09586; 1; 12;; n. BS CTCCCGCCAAGT; R09599; -1; 12;; n. BS CTCCCGCCAAAG; R09600; -1; 12;; n. BS CTCGCGCCAAAT; R09601; -1; 12;; n. BS TTGGCGCCAAAC; R09603; -1; 12;; n. BS TTACCGCGAAAG; R09604; -3; 12;; p. BS AGCGCGGGAATT; R09626; -3; 12;; p. BS GGAGCGCGGGGC; R09627; 5; 12;; n. BS GGGGCGCCACGA; R09628; 2; 12;; n. BS TGGGCGCGAAAA; R09798; -1; 12;; n. BS AGCGCGCGAAAT; R09803; -1; 12;; n. BS CGCCCGCCAAAG; R11777; -1; 12;; n. BS GTAGCGGGAAAT; R13183; 11; 12;; n. BS CGCGCGCCGAAG; C00119, s00175; -1; 12;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00921 XX ID V$GR_Q6_01 XX DT 31.08.2003 (created); dtc. DT 19.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA GR XX DE half-site matrix XX BF T00335; GR; Species: mouse, Mus musculus. BF T00333; GR; Species: rat, Rattus norvegicus. BF T05076; GR; Species: human, Homo sapiens. BF T00337; GR-alpha; Species: human, Homo sapiens. BF T01920; GR-beta; Species: human, Homo sapiens. XX P0 A C G T 01 12 7 4 18 N 02 9 13 10 9 N 03 2 0 1 38 T 04 0 0 40 1 G 05 0 2 0 39 T 06 5 11 5 20 Y 07 0 40 1 0 C 08 9 7 0 25 T XX BA 41 compiled sequences including 7 TRANSCompel sites XX BS TTTGTCCT; R00429; -2; 8;; p. BS AATGTTCA; R00579; -2; 8;; p. BS TGTGTTCT; R00973; 1; 8;; n. BS TATGTACA; R00974; -2; 8;; p. BS TTTGTACA; R00977; -2; 8;; p. BS TCTGTTCT; R00984; -2; 8;; n. BS TGTGTCCT; R01030; -2; 8;; p. BS AATGTTCT; R01100; 1; 8;; n. BS GGTTTCCT; R01115; 12; 8;; p. BS ACTGTTCT; R01117; -2; 8;; p. BS AGTGTTCT; R01119; 1; 8;; p. BS TCTGTTCT; R01146; 1; 8;; n. BS TCTGTTCT; R01147; 1; 8;; n. BS GGTGTGGT; R01484; 10; 8;; p. BS CTTGTTCT; R01547; -2; 8;; p. BS TCTGTTCA; R01554; -2; 8;; p. BS TCTGTTCT; R01645; 4; 8;; n. BS ACTGTACA; R01811; 8; 8;; p. BS TGTGTGCC; R03535; -2; 8;; p. BS CCTGTCCC; R03536; -2; 8;; p. BS TGTGTCCT; R03537; -2; 8;; n. BS TTTGTTCT; R03538; 4; 8;; n. BS CATGTGCC; R03539; 4; 8;; n. BS GCTGCACT; R03551; 7; 8;; p. BS ATTGTGCA; R03552; 17; 8;; n. BS CCAGTCCT; R03555; 5; 8;; n. BS TCTGCCCT; R03556; 10; 8;; p. BS ACAGTGCT; R03558; 11; 8;; p. BS TGTGTTCT; R03890; 10; 8;; p. BS AATGTCCT; R03891; 3; 8;; n. BS CGTGTTCT; R12343; 5; 8;; p. BS AATGTTCC; R12353; 20; 8;; p. BS CTGGTACT; R12367; 14; 8;; n. BS CTTGTCCA; R12380; 12; 8;; n. BS GATGTTCT; C00021, s00029; 8; 8;; p. BS TCTGTTCA; C00042, s00063; 8; 8;; p. BS AATGTTCC; C00078, s00116; -1; 8;; n. BS TTTGTCCC; C00130, s00195; 1; 8;; n. BS AGTGTTCA; C00130, s00196; 1; 8;; n. BS TTTGTTCT; C00287, s00497; 8; 8;; p. BS AATGTCCC; C00298, s00518; 5; 8;; p. XX CC half-site of GRE (glucocorticoid response element) XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00922 XX ID V$SRF_Q5_01 XX DT 31.08.2003 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA SRF XX BF T00672; SRF; Species: human, Homo sapiens. BF T00764; SRF; Species: human, Homo sapiens. BF T00766; SRF; Species: rat, Rattus norvegicus. BF T05114; SRF; Species: mouse, Mus musculus. BF T03997; SRF (263 AA); Species: mouse, Mus musculus. BF T03996; SRF (400 AA); Species: mouse, Mus musculus. BF T03995; SRF (440 AA); Species: mouse, Mus musculus. BF T00765; SRF (504 AA); Species: mouse, Mus musculus. XX P0 A C G T 01 3 26 0 0 C 02 0 28 0 1 C 03 22 1 3 3 A 04 12 2 1 14 W 05 26 0 3 0 A 06 5 0 2 22 T 07 26 0 1 2 A 08 14 0 4 11 W 09 1 0 28 0 G 10 1 0 28 0 G 11 15 11 2 1 M 12 6 7 12 4 N 13 13 11 3 2 M 14 2 8 6 13 N 15 6 2 15 6 G XX BA 29 compiled sequences XX BS CCATGAATGGCCTCG; R00022; 1; 15;; p. BS CCAAATAAGGCAAGG; R00027; 1; 15;; p. BS CCAAATATGGCGACA; R00031; 10; 15;; p. BS CCAAATATGGCTCGA; R00036; 5; 15;; p. BS CCATATAAGGACATG; R00038; -5; 15;; n. BS ACGCGATTGGCCCCG; R00039; -5; 15;; n. BS CTGGAGAGGGGGCTG; R00142; -6; 15;; n. BS CCTAATATGGACATC; R00472; 2; 15;; n. BS CCTAATAGGGAAATT; R01365; 10; 15;; p. BS CCAAATAGGGAGCTG; R01757; -5; 15;; n. BS CCATGTAAGGAAGGG; R01759; -5; 15;; n. BS CCATATATGGCCATG; R01795; 7; 15;; p. BS CCATATAAGGCGCTG; R01796; 2; 15;; n. BS CCATATAAGGAGCAG; R01797; 7; 15;; p. BS ACTAATTAGGAAACT; R01890; 1; 15;; p. BS CCATAAAAGGATATG; R02907; -5; 15;; n. BS CCAAATATGGAAATA; R03375; 5; 15;; p. BS CCACATATGGCTGCT; R03412; 2; 15;; n. BS CCGTATAAGGAGCGT; R03495; 1; 15;; n. BS CCAAAGAAGGCGCTC; R03496; 1; 15;; n. BS CCAAATATGGAGCCT; R09532; 11; 15;; p. BS CCATATAAGGAGCGG; R09533; 1; 15;; p. BS CCATAAAAGGAAACA; R09534; 1; 15;; p. BS CCATATAAAGAGATA; R09535; -8; 15;; n. BS ACCAATGGGGCGGGG; R09536; -1; 15;; p. BS CCATAAAAGGTTTTT; R09541; 5; 15;; p. BS CCATATATGGGCCTA; R13375; 7; 15;; p. BS CCAAATATGGCGACG; C00008, s00012; 1; 15;; p. BS CCATATAAGAACAAG; C00127, s00190; -5; 15;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00923 XX ID I$ADF1_Q6_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA Adf-1 XX BF T00008; Adf-1; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 2 2 3 0 V 02 0 4 2 1 C 03 0 0 6 1 G 04 0 5 0 2 C 05 0 3 0 4 Y 06 0 0 7 0 G 07 0 7 0 0 C 08 3 3 0 1 M 09 1 0 5 1 G 10 0 4 0 3 Y 11 0 6 0 1 C 12 0 0 7 0 G 13 0 5 0 2 C 14 0 2 0 5 T 15 0 0 7 0 G 16 3 3 1 0 M 17 2 4 1 0 C 18 1 1 2 3 N 19 0 1 4 2 G 20 1 4 0 2 C 21 0 1 5 1 G XX BA 7 compiled sequences XX BS ACGCCGCTGCTGCTGCATCCG; R00059; -2; 21;; p. BS CTGCTGCATCCGTCGACGTCG; R00060; -9; 21;; p. BS GCGCTGCCGTCGCCGGCTGAG; R00067; -2; 21;; p. BS CGGTCGCAGTCGCTGCCAGTG; R00130; -2; 21;; p. BS GCGCTGCCACCGCTGACTGCG; R00132; -1; 21;; p. BS AGTCCGCAGCCGCTGAACTTC; R00293; -6; 21;; n. BS GCGTTGCCGTCGTTGCGGGCT; R01986; 6; 21;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00924 XX ID V$AP1_Q2_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00031; AP-1; Species: rat, Rattus norvegicus. BF T00032; AP-1; Species: mouse, Mus musculus. BF T00123; c-Fos; Species: human, Homo sapiens. BF T00122; c-Fos; Species: mouse, Mus musculus. BF T00124; c-Fos; Species: rat, Rattus norvegicus. BF T00131; c-Jun; Species: mouse, Mus musculus. BF T00132; c-Jun; Species: rat, Rattus norvegicus. BF T00133; c-Jun; Species: human, Homo sapiens. BF T00291; FosB; Species: mouse, Mus musculus. BF T00292; Fra-1; Species: mouse, Mus musculus. BF T01462; Fra-1; Species: human, Homo sapiens. BF T01991; Fra-2; Species: human, Homo sapiens. BF T02199; Fra-2; Species: mouse, Mus musculus. BF T01977; JunB; Species: human, Homo sapiens. BF T00436; JunB; Species: mouse, Mus musculus. BF T01978; JunD; Species: human, Homo sapiens. BF T00437; JunD; Species: mouse, Mus musculus. XX P0 A C G T 01 0 0 0 46 T 02 0 0 43 3 G 03 46 0 0 0 A 04 2 36 5 3 C 05 8 6 6 26 T 06 6 26 3 11 C 07 32 7 3 4 A 08 13 11 9 13 N 09 11 9 14 12 N 10 2 14 22 8 S 11 5 5 18 18 K 12 8 12 13 13 N XX BA 46 compiled sequences XX BS TGACTCAGAGGA; R00133; 5; 12;; p. BS TGACTCATGCTT; R00235; -4; 12;; n. BS TGAGTTATACCC; R00345; -5; 12;; n. BS TGACGTAACGTG; R00352; 1; 12;; p. BS TGACGTCACGGG; R00455; -3; 12;; n. BS TGACGCAGATGT; R00468; -5; 12;; n. BS TGACTGAATGGA; R00934; -5; 12;; n. BS TGACATCATGGG; R00957; 2; 12;; p. BS TGAGTGACCGCG; R00960; 6; 12;; p. BS TGACTCAGCGCG; R01037; 1; 12;; p. BS TGACCTCACCGC; R01050; 3; 12;; n. BS TGACGCGCTGGC; R01052; 9; 12;; p. BS TGACGCGCAGTC; R01062; 2; 12;; p. BS TGACCCACCCAC; R01195; -5; 12;; n. BS TGACTAACTGAC; R01223; 1; 12;; p. BS TGATTGGGTGGA; R01239; -5; 12;; n. BS TGACGCAGGCCC; R01258; -5; 12;; n. BS TGACTAATTGAG; R01383; 2; 12;; p. BS TGACTAATTGAG; R01394; 2; 12;; p. BS TGACACACATTC; R01412; -5; 12;; n. BS TGACTCTCTGGA; R02952; 9; 12;; n. BS TGACTCATCCTT; R03059; 3; 12;; n. BS TGACCCAAACTA; R03102; -4; 12;; n. BS TGAGTAATGCGT; R03300; 10; 12;; p. BS TGACATCATGGG; R04032; 1; 12;; p. BS TGACTCAAGAGG; R04330; 6; 12;; n. BS TGACTCATTTTT; R04348; 8; 12;; p. BS TGATTAATGGTG; R05033; 8; 12;; n. BS TGAAACAGTTTT; R05035; 7; 12;; n. BS TGAAACAAATTT; R05036; 4; 12;; n. BS TTACCTTTGTTT; R05050; 5; 12;; n. BS TTACACATATTT; R05052; 4; 12;; n. BS TGAGCTACAGTT; R05071; 8; 12;; p. BS TTACACCAGATT; R05079; -3; 12;; n. BS TGACTCAGGGGC; R05083; 11; 12;; n. BS TGACATCAGGGA; R05089; 1; 12;; n. BS TGACTCTTGCTT; R05091; 9; 12;; p. BS TGACTCAAGCCC; R05093; 7; 12;; p. BS TGATTAATGGTG; R05095; 3; 12;; n. BS TGAGTTTCAGGA; R05098; 14; 12;; p. BS TGACTCACTCGC; R08470; -5; 12;; n. BS TGACTCAGCCTC; R08472; -5; 12;; n. BS TGACTCAGACAG; R08473; -5; 12;; n. BS TGACCTCAGTGT; R13230; -1; 12;; n. BS TGACTCATGCTG; R13244; 3; 12;; p. BS TGACTCACCGGA; R13320; 5; 12;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00925 XX ID V$AP1_Q6_01 XX DT 31.08.2003 (created); dtc. DT 28.05.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00031; AP-1; Species: rat, Rattus norvegicus. BF T00032; AP-1; Species: mouse, Mus musculus. BF T00123; c-Fos; Species: human, Homo sapiens. BF T00122; c-Fos; Species: mouse, Mus musculus. BF T00124; c-Fos; Species: rat, Rattus norvegicus. BF T00131; c-Jun; Species: mouse, Mus musculus. BF T00132; c-Jun; Species: rat, Rattus norvegicus. BF T00133; c-Jun; Species: human, Homo sapiens. BF T05669; c-Jun:c-Fos; Species: rat, Rattus norvegicus. BF T05667; c-Jun:FosB; Species: mouse, Mus musculus. BF T05850; c-Jun:JunD; Species: human, Homo sapiens. BF T02198; deltaFosB; Species: mouse, Mus musculus. BF T05987; deltaFosB; Species: rat, Rattus norvegicus. BF T05989; deltaFosB; Species: human, Homo sapiens. BF T00291; FosB; Species: mouse, Mus musculus. BF T05984; FosB; Species: human, Homo sapiens. BF T05985; FosB; Species: rat, Rattus norvegicus. BF T00292; Fra-1; Species: mouse, Mus musculus. BF T01462; Fra-1; Species: human, Homo sapiens. BF T01991; Fra-2; Species: human, Homo sapiens. BF T02199; Fra-2; Species: mouse, Mus musculus. BF T01977; JunB; Species: human, Homo sapiens. BF T00436; JunB; Species: mouse, Mus musculus. BF T05843; JunB:Fra-1; Species: human, Homo sapiens. BF T05815; JunB:Fra-2; Species: human, Homo sapiens. BF T02196; JunD; Species: chick, Gallus gallus. BF T01978; JunD; Species: human, Homo sapiens. BF T00437; JunD; Species: mouse, Mus musculus. BF T02197; JunD; Species: rat, Rattus norvegicus. BF T05988; JunD:deltaFosB; Species: rat, Rattus norvegicus. BF T05844; JunD:Fra-2; Species: human, Homo sapiens. XX P0 A C G T 01 53 29 35 13 N 02 0 0 1 129 T 03 1 1 124 4 G 04 129 0 1 0 A 05 7 93 16 14 C 06 19 15 14 82 T 07 26 71 5 28 C 08 91 23 7 9 A 09 38 24 35 33 N XX BA 130 compiled sequences XX BS GTGACTCAG; R00007; 1; 9;; p. BS ATGACTCAG; R00133; 4; 9;; p. BS ATGACATCA; R00199; 6; 9;; n. BS CTGACTCAT; R00235; 1; 9;; n. BS ATGACTAAC; R00341; 10; 9;; p. BS GTGACGAAA; R00343; 7; 9;; n. BS GTGAGTTAT; R00345; -1; 9;; n. BS GTGACGTAA; R00352; -1; 9;; p. BS GTGACGTCA; R00455; 1; 9;; p. BS CTGACGCAG; R00468; -1; 9;; n. BS GTGGCTAAG; R00578; 7; 9;; p. BS GTCAGCAAA; R00637; 8; 9;; n. BS GTGATTCAG; R00736; 1; 9;; n. BS ATGACTAAC; R00742; 1; 9;; n. BS TTGACTCAC; R00805; 2; 9;; p. BS TTGACTCAC; R00806; 14; 9;; n. BS ATTATTAAC; R00903; -1; 9;; n. BS CTGACTGAA; R00934; -1; 9;; n. BS CTGACTCCA; R00954; 2; 9;; p. BS GTGACATCA; R00957; 1; 9;; p. BS GTGAGTGAC; R00960; 5; 9;; p. BS GTGACTCAG; R01037; -1; 9;; p. BS CTGACCTCA; R01050; 7; 9;; n. BS ATGACGCGC; R01052; 8; 9;; p. BS TTGACGCGC; R01062; 1; 9;; p. BS ATGACGTCA; R01067; 1; 9;; n. BS GTGACCCAC; R01195; -1; 9;; n. BS GTGACTAAC; R01223; -1; 9;; p. BS ATGATTGGG; R01239; -1; 9;; n. BS GTGACTCAG; R01249; 1; 9;; p. BS CTGACGCAG; R01258; -1; 9;; n. BS CTGACTAAA; R01287; 4; 9;; n. BS CTGACGTCA; R01358; 2; 9;; p. BS CTGACTAAT; R01383; 1; 9;; p. BS CTGACTAAT; R01394; 1; 9;; p. BS CTGACACAC; R01412; -1; 9;; n. BS GTGAGTTGG; R01460; -2; 9;; p. BS GTGATCGCC; R01461; 8; 9;; p. BS GTGATTCAG; R01491; 2; 9;; p. BS ATGACTCAA; R01567; 11; 9;; n. BS CTGAGACGA; R01729; -1; 9;; p. BS TTGAGACTT; R01730; -1; 9;; p. BS ATGACTCAC; R01776; -1; 9;; p. BS ATGACTCAC; R01777; -1; 9;; p. BS CTGACTCAT; R02340; 6; 9;; n. BS AGGACACGT; R02378; 10; 9;; n. BS GTGACTCAG; R02413; 9; 9;; n. BS ATGATTCAT; R02454; 14; 9;; n. BS ATGATTTAT; R02571; 8; 9;; p. BS GTGACTCAG; R02573; -1; 9;; p. BS ATGATTCAG; R02648; -1; 9;; p. BS ATGACTCAT; R02887; 2; 9;; p. BS ATGACTCTC; R02952; 13; 9;; n. BS ATGACCCCT; R03036; 4; 9;; n. BS TTGACTCAT; R03059; 7; 9;; n. BS GTGACCCAA; R03102; 1; 9;; n. BS ATGACGCAT; R03104; -1; 9;; n. BS ATGAGCTCA; R03186; 19; 9;; p. BS ATGAGTAAT; R03300; 9; 9;; p. BS GTGATTCAA; R03352; -1; 9;; n. BS ATGAGCTCA; R03386; 1; 9;; n. BS ATGACTCAG; R03439; 10; 9;; p. BS ATGACTCAG; R03440; 7; 9;; n. BS ATGACATCA; R03479; -1; 9;; p. BS ATGACTAAT; R03489; 2; 9;; n. BS ATGACTCTT; R03522; 6; 9;; n. BS TTGAACATA; R03532; 12; 9;; p. BS GTGACATCA; R04032; -1; 9;; p. BS ATGAATAAT; R04079; 1; 9;; n. BS GTGACTAAT; R04127; 1; 9;; p. BS TTGACTCAA; R04330; 10; 9;; n. BS CTGACTCAT; R04348; 7; 9;; p. BS TTGACTAAG; R04658; 2; 9;; p. BS ATGACTAAG; R05017; 31; 9;; p. BS ATGATTAAT; R05033; 12; 9;; n. BS ATGAAACAG; R05035; 11; 9;; n. BS ATGAAACAA; R05036; 8; 9;; n. BS ATTACCTTT; R05050; 9; 9;; n. BS ATTACACAT; R05052; 8; 9;; n. BS GTGAGCTAC; R05071; 7; 9;; p. BS ATTACACCA; R05079; 2; 9;; n. BS CTGACTCAG; R05083; 15; 9;; n. BS ATGACATCA; R05089; 5; 9;; n. BS ATGACTCTT; R05091; 8; 9;; p. BS GTGACTCAA; R05093; 6; 9;; p. BS ATGATTAAT; R05095; 7; 9;; n. BS CTGAGTTTC; R05098; 13; 9;; p. BS TTGACTAAA; R08116; 7; 9;; n. BS CTGACTCAC; R08470; -1; 9;; n. BS GTGACTCAG; R08472; -1; 9;; n. BS GTGACTCAG; R08473; -1; 9;; n. BS CTGACCTCA; R08476; 7; 9;; n. BS ATGAGGTAA; R08483; 1; 9;; n. BS ATGACTTCA; R08493; 2; 9;; n. BS ATGATTCAT; R08494; 1; 9;; n. BS GTGATTCAC; R08510; -1; 9;; p. BS CTGACTCTG; R11383; 10; 9;; p. BS CTGACGTAA; R11553; 1; 9;; n. BS ATGACTCAA; R13173; 7; 9;; p. BS TTGACTCAC; R13178; 7; 9;; n. BS GTGACCTCA; R13230; 4; 9;; n. BS CTGACTCAT; R13244; 2; 9;; p. BS GTGAGCCAC; R13275; 12; 9;; p. BS CTGACTCAC; R13320; 9; 9;; n. BS ATGAGACAC; R13430; 10; 9;; n. BS GTGAATGAG; C00076, s00113; -1; 9;; p. BS ATGACACAT; C00079, s00118; -1; 9;; n. BS ATGACATAG; C00094, s00138; -1; 9;; p. BS ATGAAACAG; C00166, s00163; -1; 9;; n. BS GTGATTAAG; C00111, s00164; -1; 9;; p. BS CTGACTCAT; C00116, s00169; -1; 9;; n. BS ATGAGGTAA; C00133, s00202; -1; 9;; p. BS CTGACTCAG; C00139, s00213; -1; 9;; n. BS ATGACATCA; C00142, s00219; 1; 9;; n. BS ATGACTCAG; C00238, s00404; -1; 9;; n. BS GTGACGAGG; C00241, s00410; -1; 9;; p. BS CTGACTCAG; C00251, s00424; -1; 9;; n. BS TTGACTCAG; C00263, s00446; -1; 9;; n. BS CTGACTCAT; C00264, s00447; -1; 9;; p. BS ATGACTCAC; C00267, s00453; 1; 9;; n. BS GTGACTCAT; C00268, s00457; -1; 9;; n. BS ATGAGTAAT; C00293, s00508; -1; 9;; p. BS GTGACTCTT; C00294, s00511; -1; 9;; p. BS TTGACTAAG; C00316, s00553; -1; 9;; n. BS TTGACTCCG; C00319, s00558; 2; 9;; p. BS CTGACATCA; C00347, s00604; 1; 9;; n. BS CTGACCTCA; C00348, s00606; 1; 9;; n. BS CTAACTACA; C00354, s00615; -2; 9;; p. BS ATGACTCAG; C00357, s00620; -1; 9;; p. BS ATGAATAAT; C00365, s00635; -1; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00926 XX ID V$AP1_Q4_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA AP-1 XX BF T00029; AP-1; Species: human, Homo sapiens. BF T00031; AP-1; Species: rat, Rattus norvegicus. BF T00032; AP-1; Species: mouse, Mus musculus. BF T00123; c-Fos; Species: human, Homo sapiens. BF T00122; c-Fos; Species: mouse, Mus musculus. BF T00124; c-Fos; Species: rat, Rattus norvegicus. BF T00131; c-Jun; Species: mouse, Mus musculus. BF T00132; c-Jun; Species: rat, Rattus norvegicus. BF T00133; c-Jun; Species: human, Homo sapiens. BF T00291; FosB; Species: mouse, Mus musculus. BF T00292; Fra-1; Species: mouse, Mus musculus. BF T01462; Fra-1; Species: human, Homo sapiens. BF T01991; Fra-2; Species: human, Homo sapiens. BF T02199; Fra-2; Species: mouse, Mus musculus. BF T01977; JunB; Species: human, Homo sapiens. BF T00436; JunB; Species: mouse, Mus musculus. BF T01978; JunD; Species: human, Homo sapiens. BF T00437; JunD; Species: mouse, Mus musculus. XX P0 A C G T 01 8 7 19 85 T 02 27 5 65 22 G 03 76 13 13 17 A 04 6 17 86 10 G 05 0 1 0 118 T 06 4 112 1 2 C 07 118 1 0 0 A 08 12 29 30 48 N XX BA 119 compiled sequences including 27 TRANSCompel sites XX BS TGAGTCAT; R00133; 4; 8;; n. BS TGAGTCAG; R00235; 2; 8;; p. BS TTAGTCAT; R00341; 10; 8;; n. BS TTCGTCAC; R00343; 8; 8;; p. BS TAACTCAC; R00345; 1; 8;; p. BS TACGTCAC; R00352; -1; 8;; n. BS GACGTCAC; R00455; 3; 8;; p. BS TGCGTCAG; R00468; 1; 8;; p. BS TGGCTAAG; R00578; 8; 8;; p. BS TGATTCAG; R00736; 1; 8;; n. BS TTAGTCAT; R00742; 2; 8;; p. BS TGAGTCAA; R00805; 2; 8;; n. BS TGAGTCAA; R00806; 15; 8;; p. BS TAATCTAA; R00903; 5; 8;; p. BS TCAGTCAG; R00934; 1; 8;; p. BS GGAGTCAG; R00954; 2; 8;; n. BS GATGTCAC; R00957; 1; 8;; n. BS TCACTCAC; R00960; 5; 8;; n. BS TGAGTCAC; R01037; -1; 8;; n. BS GAGGTCAG; R01050; 8; 8;; p. BS CGCGTCAT; R01052; 8; 8;; n. BS CGCGTCAA; R01062; 1; 8;; n. BS TGGGTCAC; R01195; 1; 8;; p. BS TTAGTCAC; R01223; -1; 8;; n. BS CCAATCAT; R01239; 1; 8;; p. BS TGAGTCAC; R01249; 1; 8;; n. BS TGCGTCAG; R01258; 1; 8;; p. BS TTAGTCAG; R01287; 5; 8;; p. BS TTAGTCAG; R01383; 1; 8;; n. BS TTAGTCAG; R01394; 1; 8;; n. BS TGTGTCAG; R01412; 1; 8;; p. BS CAACTCAC; R01460; -2; 8;; n. BS GCGATCAC; R01461; 8; 8;; n. BS TGAGTCAT; R01567; 12; 8;; p. BS CGTCTCAG; R01729; -1; 8;; n. BS AGTCTCAA; R01730; -1; 8;; n. BS TGAGTCAT; R01776; -1; 8;; n. BS TGAGTCAT; R01777; -1; 8;; n. BS TGAGTCAG; R02340; 7; 8;; p. BS CACGTGCT; R02378; 7; 8;; n. BS TGAGTCAC; R02413; 10; 8;; p. BS TAAATCAT; R02571; 8; 8;; n. BS TGAGTCAC; R02573; -1; 8;; n. BS TGAGTCAT; R02887; 2; 8;; n. BS AGAGTCAT; R02952; 14; 8;; p. BS TGACTCAT; R03059; 7; 8;; n. BS TGGGTCAC; R03102; 2; 8;; p. BS TTACTCAT; R03300; 9; 8;; n. BS GAGCTCAT; R03386; 2; 8;; p. BS TGAGTCAT; R03439; 10; 8;; n. BS TGAGTCAT; R03440; 8; 8;; p. BS GATGTCAT; R03479; -1; 8;; n. BS TTAGTCAT; R03489; 3; 8;; p. BS AGAGTCAT; R03522; 7; 8;; p. BS GATGTCAC; R04032; -1; 8;; n. BS TTATTCAT; R04079; 2; 8;; p. BS TTAGTCAC; R04127; 1; 8;; n. BS TGAGTCAA; R04330; 11; 8;; p. BS TGAGTCAG; R04348; 7; 8;; n. BS TTAGTCAA; R04658; 2; 8;; n. BS TTAGTCAT; R05017; 31; 8;; n. BS TTAATCAT; R05033; 13; 8;; p. BS TGTTTCAT; R05035; 12; 8;; p. BS TGTTTCAT; R05036; 9; 8;; p. BS AAGGTAAT; R05050; 10; 8;; p. BS TGTGTAAT; R05052; 9; 8;; p. BS TAGCTCAC; R05071; 7; 8;; n. BS GGTGTAAT; R05079; 3; 8;; p. BS TGAGTCAG; R05083; 16; 8;; p. BS GATGTCAT; R05089; 6; 8;; p. BS AGAGTCAT; R05091; 8; 8;; n. BS TGAGTCAC; R05093; 6; 8;; n. BS TTAATCAT; R05095; 8; 8;; p. BS AAACTCAG; R05098; 13; 8;; n. BS TTAGTCAA; R08116; 8; 8;; p. BS TGAGTCAG; R08470; 1; 8;; p. BS TGAGTCAC; R08472; 1; 8;; p. BS TGAGTCAC; R08473; 1; 8;; p. BS GAGGTCAG; R08476; 8; 8;; p. BS TACCTCAT; R08483; 2; 8;; p. BS GAAGTCAT; R08493; 3; 8;; p. BS TGATTCAT; R08494; 1; 8;; n. BS TGATTCAC; R08510; 1; 8;; p. BS AGAGTCAG; R11383; 10; 8;; n. BS TACGTCAG; R11553; 2; 8;; p. BS TGAGTCAT; R13173; 7; 8;; n. BS TGAGTCAA; R13178; 8; 8;; p. BS GAGGTCAC; R13230; 5; 8;; p. BS TGAGTCAG; R13244; 2; 8;; n. BS TGGCTCAC; R13275; 12; 8;; n. BS TGAGTCAG; R13320; 10; 8;; p. BS TGTCTCAT; R13430; 11; 8;; p. BS TGCGTCAT; C00106, s00103; 2; 8;; p. BS TCATTCAC; C00076, s00113; -1; 8;; n. BS TGTGTCAT; C00079, s00118; 1; 8;; p. BS TATGTCAT; C00094, s00138; -1; 8;; n. BS TGTTTCAT; C00166, s00163; 1; 8;; p. BS TTAATCAC; C00111, s00164; -1; 8;; n. BS TGAGTCAG; C00116, s00169; 1; 8;; p. BS TACCTCAT; C00133, s00202; -1; 8;; n. BS TGAGTCAG; C00139, s00213; 1; 8;; p. BS GATGTCAT; C00142, s00219; 2; 8;; p. BS TGAGTCAT; C00238, s00404; 1; 8;; p. BS CTCGTCAC; C00241, s00410; -1; 8;; n. BS TGAGTCAG; C00251, s00424; 1; 8;; p. BS TGAGTCAA; C00263, s00446; 1; 8;; p. BS TGAGTCAG; C00264, s00447; -1; 8;; n. BS GAGCTCAT; C00266, s00452; 1; 8;; n. BS TGAGTCAT; C00267, s00453; 2; 8;; p. BS TGAGTCAC; C00268, s00457; 1; 8;; p. BS TTACTCAT; C00293, s00508; -1; 8;; n. BS AGAGTCAC; C00294, s00511; -1; 8;; n. BS TTAGTCAA; C00316, s00553; 1; 8;; p. BS GGAGTCAA; C00319, s00558; 2; 8;; n. BS GATGTCAG; C00347, s00604; 2; 8;; p. BS GAGGTCAG; C00348, s00606; 2; 8;; p. BS GTAGTTAG; C00354, s00615; -2; 8;; n. BS TGAGTCAT; C00357, s00620; -1; 8;; n. BS TTATTCAT; C00365, s00635; 1; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00927 XX ID V$AP4_Q6_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA AP-4 XX BF T00036; AP-4; Species: human, Homo sapiens. XX P0 A C G T 01 3 1 3 0 R 02 2 3 1 1 N 03 0 6 1 0 C 04 5 1 0 1 A 05 0 1 6 0 G 06 1 5 1 0 C 07 0 0 0 7 T 08 0 0 7 0 G 09 1 4 0 2 C XX BA 7 compiled sequences XX BS CCGCGCTGA; R01038; 1; 9;; n. BS GCCAGCTGC; R01227; 3; 9;; n. BS AACAGCTGT; R01240; 2; 9;; p. BS GTCAGCTGC; R01259; 4; 9;; p. BS ACCAGCTGT; R01416; 3; 9;; n. BS AGCTGATGC; R01567; 2; 9;; p. BS GACACGTGC; R02378; 8; 9;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00928 XX ID V$E2_Q6_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA E2 XX BF T00205; E2; Species: BPV-1, bovine papilloma virus type 1. XX P0 A C G T 01 2 4 3 9 T 02 3 4 7 4 N 03 3 4 1 10 T 04 18 0 0 0 A 05 1 17 0 0 C 06 0 18 0 0 C 07 5 0 12 1 G 08 1 3 5 9 K 09 0 4 5 9 K 10 6 0 4 8 W 11 1 7 2 8 Y 12 1 11 2 4 C 13 0 0 18 0 G 14 0 0 14 4 G 15 0 0 0 18 T 16 0 4 7 7 K XX BA 18 compiled sequences XX BS TGTACCGGGTGTGGTT; R00171; 2; 16;; n. BS TCTACCGCCGCCGGTG; R00172; -1; 16;; n. BS TTTACCGGGATAGGTC; R00174; 2; 16;; n. BS TATAACGTGTTCGGTC; R00175; 2; 16;; n. BS TTTACCAGTTCTGGTT; R00176; 2; 16;; n. BS TGCACCATTACTGGTG; R00177; -1; 16;; n. BS TGTACCGCCATCGGTG; R00180; -9; 16;; p. BS AGTACCGTTGCCGGTC; R00184; -3; 16;; p. BS CAAACCGTCTTCGGTG; R00186; -1; 16;; p. BS CTTACCGGTTTCGGTG; R00187; 2; 16;; n. BS CACACCATCACCGTTT; R00188; -1; 16;; p. BS GCTACCTTTATCGTTT; R00189; 2; 16;; n. BS GGAACCGCTGCTGTTT; R00190; 2; 16;; n. BS GTTACCAGGAGGGGTG; R00191; 4; 16;; n. BS AGCACCGTTTAGGTTC; R00192; 2; 16;; n. BS TGCACCATGGCCGGTG; R00193; -1; 16;; p. BS CCGACCGTTTTCGGTT; R00743; -1; 16;; n. BS TCAACCGATTTCGGTT; R04678; -1; 16;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00929 XX ID V$MYOD_Q6_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA MyoD XX BF T00204; E12; Species: human, Homo sapiens. BF T00675; E12; Species: rat, Rattus norvegicus. BF T01786; E12; Species: mouse, Mus musculus. BF T00207; E47; Species: human, Homo sapiens. BF T00674; E47; Species: rat, Rattus norvegicus. BF T01788; E47; Species: mouse, Mus musculus. BF T00512; MRF4; Species: rat, Rattus norvegicus. BF T00525; MyoD; Species: human, Homo sapiens. BF T00526; MyoD; Species: mouse, Mus musculus. BF T00528; myogenin; Species: mouse, Mus musculus. BF T01532; myogenin; Species: rat, Rattus norvegicus. XX P0 A C G T 01 4 9 3 2 C 02 3 7 4 4 N 03 3 4 10 1 G 04 6 6 5 1 N 05 7 3 7 1 R 06 6 4 7 1 N 07 0 18 0 0 C 08 18 0 0 0 A 09 1 0 16 1 G 10 2 3 12 1 G 11 0 0 1 17 T 12 0 0 18 0 G 13 3 5 7 3 N 14 4 8 2 4 N 15 3 3 10 2 G 16 7 2 5 4 N 17 9 2 4 3 A 18 3 4 8 3 N XX BA 18 compiled sequences XX BS GCATGACAGCTGAGGGCC; R00012; -3; 18;; n. BS CTGGAACAGGTGGTGTAA; R00014; -5; 18;; p. BS AGGAGCCAAGGGCAGAAC; R00018; -4; 18;; n. BS AGGGGACAGGTGCTGGTG; R00019; 2; 18;; n. BS CCCAGACATGTGGCTGCT; R00240; -4; 18;; p. BS AGGCAGCAGGTGTTGGGG; R00242; -1; 18;; n. BS CCTAGGCAGGTGGCCCAG; R00881; -4; 18;; p. BS CAGGGTCAGTTGGAGCAG; R02452; -4; 18;; n. BS TCGCAGCAGGTGCAAAAA; R03074; -2; 18;; p. BS CCCCACCAGCTGGCGAAG; R03075; -5; 18;; p. BS AAGCAACAGGTGCCTAAT; R03076; -2; 18;; p. BS CTAAGGCAGGTGAGGAGC; R03109; -6; 18;; n. BS TGGGAACAGCTGACAATG; R04021; 13; 18;; p. BS CTGACGCAGATGTCCTAA; R04046; 14; 18;; n. BS CTGCTGCAGGTGTTCTGG; R04158; 4; 18;; n. BS GACCAGCAGGTGGCGAAG; R04418; 5; 18;; n. BS GCCACCCAGATGGCATTT; R08512; -6; 18;; n. BS CCAGCCCAGGTGCAGGGC; R13322; 5; 18;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00930 XX ID V$OCT1_Q5_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA Oct-1 XX BF T00959; POU2F1; Species: monkey, Cercopithecus aethiops. BF T01157; POU2F1; Species: gibbon ape, Hylobates lar. BF T00641; POU2F1; Species: human, Homo sapiens. BF T00643; POU2F1; Species: rat, Rattus norvegicus. BF T01031; POU2F1; Species: chick, Gallus gallus. BF T00642; POU2F1; Species: clawed frog, Xenopus laevis. BF T00644; POU2F1a; Species: mouse, Mus musculus. XX P0 A C G T 01 9 5 8 32 T 02 15 10 17 12 N 03 38 8 0 8 A 04 5 1 0 48 T 05 5 1 1 47 T 06 6 2 3 43 T 07 11 6 27 10 G 08 1 51 0 2 C 09 46 4 0 4 A 10 2 3 0 49 T 11 23 4 9 18 W XX BA 54 compiled sequences including 4 TRANSCompel sites XX BS TAATTAGCATA; R00305; -2; 11;; p. BS ATATTTGCATT; R00557; -1; 11;; n. BS TCATTTGCATA; R00664; 1; 11;; n. BS ACATTTGCATA; R00666; -2; 11;; p. BS CGCATGGCATC; R00815; 9; 11;; n. BS GGAATTCCATT; R00820; 2; 11;; n. BS CGTATCTCATT; R00824; 4; 11;; n. BS TTATTTGCATA; R00833; 1; 11;; n. BS TAATTTGCATT; R00838; -2; 11;; p. BS CGATTTGCATA; R00890; -2; 11;; p. BS TGATTTGCATA; R00893; 1; 11;; p. BS TTAATTGCATG; R00932; 1; 11;; p. BS TGTTTTACATA; R00936; -1; 11;; n. BS TCATTTGCATA; R01176; 1; 11;; n. BS TCATTATCATA; R01177; 9; 11;; n. BS TGCTTTGCATA; R01389; 1; 11;; p. BS GAATTTGCATG; R01500; -1; 11;; n. BS CTATTTGCATA; R01504; 1; 11;; n. BS TATTTTACATT; R01635; 9; 11;; p. BS TGATTTGCATG; R01638; 7; 11;; p. BS TGCTTTGCATT; R01682; 10; 11;; n. BS CAATTTGCATG; R01734; -2; 11;; p. BS GAATTGACATC; R01779; 13; 11;; n. BS TCATTAGCATG; R01917; 3; 11;; n. BS TTATTTGCATA; R01933; -2; 11;; p. BS TCATTATCATA; R01989; 5; 11;; n. BS AGATTTCACTT; R02001; -3; 11;; n. BS TGATTTATACT; R02571; 9; 11;; p. BS TGCTTTGCAAT; R02584; 2; 11;; n. BS GATTGGTCCTT; R02732; 1; 11;; p. BS AATTATTCATC; R02736; -1; 11;; n. BS GAATTTGCATT; R02824; 6; 11;; p. BS TTATTTGCATA; R02989; 6; 11;; p. BS TTATTTACATA; R03010; 3; 11;; p. BS GCACTTCCATT; R03014; -2; 11;; p. BS TGATTTGCATG; R03417; 4; 11;; n. BS TACTTTGCATA; R03426; 8; 11;; p. BS TAAATTACACA; R03427; 15; 11;; n. BS TATTTACCACT; R04200; 5; 11;; n. BS ATATCTACTTA; R04201; 1; 11;; n. BS TGCTTTACATG; R04221; -2; 11;; p. BS TTATTTGCTTA; R05017; 10; 11;; p. BS AGATTTGCATT; R05056; 16; 11;; n. BS AAATATTCATT; R08525; -2; 11;; p. BS TTATTTGCATA; R09467; -2; 11;; p. BS TGATTTCCCTA; R13419; -2; 11;; p. BS GACTTTCCATG; R13422; 14; 11;; n. BS TGTTTTTCCAT; R13423; 19; 11;; p. BS TCCTTAACTTT; R13427; 20; 11;; n. BS ACATTTTCTTC; R13428; -1; 11;; p. BS TTATATATATA; C00047, s00069; 1; 11;; p. BS TTATTTACATA; C00048, s00072; -2; 11;; p. BS GCATACTCATG; C00049, s00073; 3; 11;; n. BS AATTATTCATT; C00365, s00634; 1; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00931 XX ID V$SP1_Q6_01 XX DT 31.08.2003 (created); dtc. DT 18.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA Sp1 XX BF T00754; Sp1; Species: rat, Rattus norvegicus. BF T00752; Sp1; Species: mouse, Mus musculus. BF T00753; Sp1; Species: domestic pig, Sus scrofa. BF T00755; Sp1; Species: chick, Gallus gallus. BF T00757; Sp1; Species: monkey, Cercopithecus aethiops. BF T00758; Sp1; Species: clawed frog, Xenopus. BF T01228; Sp1; Species: hamster. BF T00759; Sp1; Species: human, Homo sapiens. BF T05704; Sp1; Species: rabbit, Oryctolagus cuniculus. BF T02419; Sp3; Species: chick, Gallus gallus. BF T02453; Sp3; Species: rat, Rattus norvegicus. BF T02338; Sp3; Species: human, Homo sapiens. BF T02414; Sp4; Species: mouse, Mus musculus. BF T02456; Sp4; Species: rat, Rattus norvegicus. BF T02339; Sp4; Species: human, Homo sapiens. XX P0 A C G T 01 37 17 137 44 G 02 26 4 204 1 G 03 0 3 230 2 G 04 0 0 234 1 G 05 40 159 5 31 C 06 7 6 214 8 G 07 1 2 212 20 G 08 39 16 169 11 G 09 31 31 155 18 G 10 31 119 40 45 C XX BA 235 compiled sequences including 22 TRANSCompel sites XX BS TGGGAGGGGT; R00004; 1; 10;; n. BS GGGGCGGGAC; R00052; -3; 10;; n. BS GGGGCGGGAC; R00149; -1; 10;; p. BS AGGGCGGGCT; R00150; -1; 10;; n. BS GGGGTGGAGC; R00191; -1; 10;; n. BS GGGGCGGGGC; R00224; 1; 10;; n. BS AAGGAGGCGT; R00275; 6; 10;; p. BS GGGGCGGAGC; R00281; 1; 10;; p. BS GGGGCGGGGC; R00287; 6; 10;; n. BS GGGGCGGGGC; R00315; 7; 10;; p. BS CGGGCGGGAT; R00337; 1; 10;; p. BS TGGGCGTGGT; R00338; 1; 10;; p. BS GGGGCGGCGC; R00374; 1; 10;; n. BS GAGGAGGGAT; R00377; 1; 10;; n. BS AGGGCGGGAG; R00378; 11; 10;; n. BS GGGGCGGAGG; R00381; -2; 10;; n. BS GGCGGGGACT; R00385; 9; 10;; n. BS TGGGCGGGAC; R00447; -3; 10;; n. BS TGGGTGGAGT; R00560; 5; 10;; n. BS AGGGTGGGGC; R00565; 4; 10;; p. BS TGGGCAGTAT; R00576; 1; 10;; n. BS TGGGAGGAGC; R00610; 5; 10;; p. BS GAGGCGTGGC; R00704; -2; 10;; p. BS GGGGCGGGGC; R00816; -1; 10;; p. BS GGGGCGGGGC; R00817; -3; 10;; n. BS TGGGCGGGGC; R00818; -2; 10;; p. BS GGGGCGGGGT; R00819; -1; 10;; p. BS GGGGCGGGGG; R00821; -1; 10;; p. BS GGGGCGGGGC; R00823; -1; 10;; p. BS CGGGCGGGAC; R00825; -1; 10;; p. BS GGGGCGGGCC; R00826; -3; 10;; n. BS GGGGCGGGCC; R00955; -1; 10;; n. BS AGTGTGCACA; R01021; -2; 10;; n. BS GCGGAGTGCA; R01022; 2; 10;; n. BS GGGGCGGTCC; R01023; 2; 10;; p. BS CGGGCGGAGT; R01025; 4; 10;; n. BS GGGGCGGGGC; R01039; 1; 10;; p. BS GGGGCGGTTC; R01164; -3; 10;; n. BS CGGGAGGCGG; R01305; 4; 10;; n. BS CGGGCGGGGC; R01306; 1; 10;; n. BS GGGGCGGGGC; R01307; 1; 10;; p. BS GGGGCGGGGC; R01308; 1; 10;; p. BS TGGGCGGAAC; R01375; -1; 10;; p. BS TGGGCGGAGT; R01381; -1; 10;; p. BS TGGGCGGGGT; R01442; 1; 10;; n. BS GGGGCGGCGC; R01444; 1; 10;; p. BS TGGGTGTGGT; R01484; 8; 10;; p. BS GGGGCGGAGT; R01497; -1; 10;; p. BS AGGGCGTGGC; R01498; -3; 10;; n. BS AGGGCGGGGC; R01499; -1; 10;; p. BS GGGGCGGAGA; R01608; 1; 10;; p. BS GCCGAGGGTG; R01694; 11; 10;; p. BS TGGGTGTGGC; R01696; 2; 10;; p. BS GGGGCGTGTC; R01701; 1; 10;; p. BS GGGGCGTGGC; R01702; -1; 10;; p. BS GGGGCGGGAG; R01704; -1; 10;; p. BS GGGGCGGCGG; R01728; -3; 10;; n. BS GCGGCTCGTC; R01729; 4; 10;; n. BS AGGGCAGGGC; R01753; -2; 10;; p. BS GGGGAGGGGT; R01754; 2; 10;; p. BS GGGGCAGGGG; R01755; -4; 10;; n. BS GGGGAGGGGC; R01756; 1; 10;; n. BS GGGGAGGGGG; R01758; 2; 10;; n. BS CAGGAGGGCC; R01761; 3; 10;; n. BS GGGGTGGGGG; R01762; 3; 10;; n. BS GGGGCGGGTC; R01763; 1; 10;; n. BS GGGGCGGGGC; R01764; 1; 10;; p. BS GGGGCGGGGT; R01769; 4; 10;; p. BS GGGGCGGCAC; R01770; 1; 10;; p. BS AGGGCGTGGC; R01802; 4; 10;; p. BS GAGGCGGGGC; R01909; 4; 10;; p. BS GGGGCGGGGC; R01927; 4; 10;; p. BS GGGGCGGGTG; R01991; -1; 10;; p. BS AGGGTGGGGC; R02010; -2; 10;; n. BS GAGGAGGGGC; R02013; 7; 10;; p. BS GGGGCGGGAA; R02027; -2; 10;; p. BS CAGGAGGGGC; R02029; -1; 10;; n. BS TGGGAGGAGC; R02050; 2; 10;; p. BS GGGGCGGGGG; R02085; 7; 10;; p. BS TGGGCGGGGT; R02381; 1; 10;; n. BS GGGGAGGGAT; R02423; 4; 10;; p. BS GGGGAGGCGG; R02424; 8; 10;; n. BS GGGGTGGGCT; R02426; 6; 10;; p. BS GGGGCTGGAC; R02428; 7; 10;; p. BS GGGGCGGGAC; R02432; 8; 10;; n. BS AGGGCGGGAA; R02433; 6; 10;; n. BS GGGGACGGGC; R02435; 7; 10;; n. BS AAGGCGGGTC; R02436; 8; 10;; n. BS GGGGCGTGTG; R02438; 7; 10;; p. BS GGGGAGGGGC; R02439; 7; 10;; p. BS CGGGCGGGGG; R02440; 6; 10;; p. BS TGGGCGGGTG; R02444; 10; 10;; p. BS GGGGAGGGGC; R02446; -1; 10;; n. BS CGGGAGGCGC; R02448; -1; 10;; p. BS GGGGCGGGGC; R02572; 1; 10;; n. BS GGGGCGGAGC; R02593; 1; 10;; n. BS GGGGCGGTCC; R02693; -1; 10;; p. BS TGGGTGGTTC; R02704; 1; 10;; n. BS TGGGCGGGTC; R02717; 6; 10;; p. BS GGGGCGGGAC; R02846; 15; 10;; n. BS TGGGTGGAGC; R02850; 6; 10;; p. BS GGGGCGGCGG; R02857; 1; 10;; p. BS CGGGCGGGGG; R02858; 5; 10;; p. BS TGGGCGGGCC; R02859; 1; 10;; p. BS GAGGCGGAGT; R02860; -1; 10;; p. BS GGGGCCGGGC; R02873; 11; 10;; p. BS GGGGCGGGGC; R02891; -3; 10;; n. BS AGGGCGTAAC; R02922; 3; 10;; p. BS GGGGTGGGGT; R03041; -1; 10;; n. BS GAGGCTGAGG; R03042; -1; 10;; n. BS AGGGAGGGAC; R03044; -1; 10;; n. BS GGGGCCGGGC; R03051; 1; 10;; p. BS GGGGCGGGGT; R03052; 1; 10;; p. BS GGGGCAGGGC; R03053; 1; 10;; n. BS GGGGTGGAGT; R03118; 5; 10;; n. BS GGGGCGGGGT; R03205; 4; 10;; p. BS GAGGCGGGCT; R03281; 3; 10;; p. BS TGGGCGGAGC; R03308; 4; 10;; p. BS GGGGCGGGGC; R03348; -1; 10;; n. BS GGGGCGGAGG; R03361; 2; 10;; n. BS GGGGTGTGGC; R03367; 10; 10;; n. BS AGGGCAGGGC; R03373; 5; 10;; n. BS GGGGCGGGGG; R03382; -2; 10;; n. BS CGGGCGGCGC; R03389; 4; 10;; p. BS GGGGAGGAGC; R03486; 8; 10;; n. BS TGGGTGGGGC; R03612; 1; 10;; p. BS CAGGAAGGCT; R03613; -4; 10;; p. BS GAGGCGGGCC; R03614; 6; 10;; p. BS GAGGCGGGGC; R03868; 5; 10;; p. BS GGGGCGGTGC; R04005; 2; 10;; p. BS GGGGCGGGGC; R04007; 8; 10;; p. BS AAGGCGGGGT; R04008; 6; 10;; p. BS TGGGCGGGGC; R04009; 11; 10;; p. BS TGGGCGTGGT; R04025; 2; 10;; p. BS GGGGCGGGGA; R04034; 9; 10;; p. BS GGGGCGGCCA; R04124; 7; 10;; n. BS AGGGCGGAGC; R04160; 5; 10;; n. BS GGGGCCGGCG; R04195; 1; 10;; p. BS GAGGCGGAGG; R04282; 5; 10;; p. BS GGGGAGGGCG; R04375; -4; 10;; p. BS TGGGCGGGAT; R04407; 9; 10;; p. BS GGGGAGGGGA; R04421; 11; 10;; p. BS GAGGAGGGAC; R04422; 7; 10;; p. BS AGGGAGGCGA; R04426; -3; 10;; p. BS TGGGCGGCGC; R04431; 1; 10;; p. BS GGTGAGGGGT; R04456; 16; 10;; n. BS TGGGTGGGGG; R04493; 16; 10;; n. BS GGGGAGGGAA; R04625; 4; 10;; n. BS AGGGCGGGGC; R04668; 13; 10;; p. BS TGGGAGGGGC; R04669; 9; 10;; n. BS GGGGCGGGGC; R04679; 4; 10;; p. BS GGGGCGGGGC; R04680; 2; 10;; p. BS TGGGCGGGCT; R04701; 3; 10;; n. BS AGGGCGGAGG; R04716; 20; 10;; n. BS GGGGCGTGGG; R04734; 8; 10;; p. BS GGGGTGGGGA; R04741; -1; 10;; n. BS GGGGCGGGAG; R04752; -2; 10;; p. BS CGGGCGGCGC; R04790; -1; 10;; p. BS TGGGCGTGTG; R04794; 8; 10;; p. BS GGGGCGGGGA; R04795; 1; 10;; p. BS GGGGCGGGGG; R04829; 5; 10;; p. BS AGGGCGGGCC; R04830; 4; 10;; p. BS GGGGCGGGGC; R04834; 12; 10;; n. BS AGGGAGGAGC; R04852; 7; 10;; n. BS AGGGCGGGGG; R04875; 8; 10;; p. BS CGGGCGGGGG; R04883; 3; 10;; p. BS GGGGTGGGTG; R04918; 5; 10;; p. BS GGGGCGGGGC; R04930; 3; 10;; p. BS GGGGTGGGGG; R04932; 8; 10;; p. BS GGGGCGGGGC; R04966; 10; 10;; p. BS GGGGGGGGGA; R04967; 8; 10;; p. BS GGGGCGGGGG; R04968; 7; 10;; p. BS GGGGCGGGAA; R04969; 9; 10;; p. BS GAGTCTGGGA; R04979; 4; 10;; p. BS AGGGCGGTCA; R04982; -1; 10;; n. BS AGGGTGGGAT; R04995; 2; 10;; n. BS AAGGCGGGAA; R04996; 14; 10;; p. BS GGGGAGGGGA; R04997; 4; 10;; p. BS GAGGCTGGGC; R04998; 9; 10;; p. BS TGGGAGGGGC; R05000; 4; 10;; n. BS TGGGTGGACA; R05001; 12; 10;; n. BS AGGGGGGATG; R05003; 8; 10;; n. BS AGGGAGGGGC; R08095; 7; 10;; n. BS TGGGTGTGCC; R08166; -4; 10;; p. BS AAGGTGGGCC; R08207; -2; 10;; p. BS AGGGAGGGAT; R08503; 2; 10;; p. BS GGGGCCGGTC; R08667; 1; 10;; p. BS GGGGCGGGCT; R08671; 2; 10;; p. BS GAGGCGGGGC; R08674; -2; 10;; p. BS TGGGCGGACC; R08675; -1; 10;; p. BS GAGGCGGGGT; R08677; -1; 10;; n. BS GAGGCGGAGC; R09485; -1; 10;; n. BS GGGGCGGGGT; R09487; -3; 10;; n. BS GGGGCTGGGC; R09488; -1; 10;; n. BS GGGGCTGGGA; R09489; -1; 10;; n. BS AGGGCGGGGC; R09490; -3; 10;; n. BS TGGGCGTGGG; R11274; 21; 10;; p. BS GGGGCGGAAC; R11589; 8; 10;; p. BS CGGGCGGCCA; R11778; 6; 10;; p. BS CGGGCGTTCC; R12093; 5; 10;; p. BS GGGGCTGGTT; R12971; 9; 10;; p. BS GGGGCGGGAG; R12973; 7; 10;; n. BS GGGGAGGAGG; R12978; 8; 10;; p. BS TGGGCGGGGC; R13050; 4; 10;; n. BS GGGGTGGGGA; R13166; 6; 10;; p. BS GGGGCAGGGA; R13212; 4; 10;; n. BS GGGGCGTGGC; R13258; 3; 10;; p. BS GGGGCGGGGC; R13261; -1; 10;; p. BS GGGGTGGGGC; R13276; 6; 10;; p. BS GGCGGGGCAA; R13302; 2; 10;; p. BS TGGGCGGGGC; R13304; -1; 10;; n. BS TGGGCCGGCC; R13318; 1; 10;; n. BS GGGGTGGGGA; R13413; 5; 10;; n. BS TGGGTGGGCC; C00006, s00009; -2; 10;; p. BS TGGGTGGTTC; C00007, s00010; -3; 10;; n. BS GGGGCGGGGA; C00027, s00016; -3; 10;; n. BS TGGGCGAGGC; C00136, s00208; -2; 10;; n. BS AGGGCGGGTC; C00179, s00290; -1; 10;; p. BS TGGGCGGAGT; C00180, s00292; 1; 10;; p. BS GGGGAGGAGT; C00204, s00339; -3; 10;; n. BS TGGGAGGAGC; C00218, s00365; 2; 10;; p. BS GGGGCGGGGG; C00221, s00371; -3; 10;; n. BS AGGGCGGGGA; C00255, s00430; 3; 10;; p. BS AGGGTGGGGT; C00256, s00432; 1; 10;; p. BS CTGGTGGGCT; C00271, s00460; -2; 10;; n. BS TCGGTGGGCT; C00273, s00465; -2; 10;; n. BS GAGGAGGAGC; C00275, s00469; 2; 10;; n. BS GGGGAGGGGA; C00281, s00481; 2; 10;; n. BS GGGGCGTGGA; C00283, s00486; -1; 10;; p. BS GGGGCGGTGC; C00299, s00522; -3; 10;; n. BS AGGGCGGAGT; C00319, s00559; 2; 10;; n. BS AAGGGGGTGA; C00325, s00566; -2; 10;; p. BS GGGGCGGGGT; C00327, s00571; -1; 10;; n. BS TGGGCGGAAA; C00355, s00616; -1; 10;; p. BS AGGGCGGAGC; C00359, s00624; -3; 10;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00932 XX ID V$SP1_Q4_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA Sp1 XX BF T00754; Sp1; Species: rat, Rattus norvegicus. BF T00759; Sp1; Species: human, Homo sapiens. BF T02356; Sp2; Species: human, Homo sapiens. BF T02453; Sp3; Species: rat, Rattus norvegicus. BF T02338; Sp3; Species: human, Homo sapiens. BF T02339; Sp4; Species: human, Homo sapiens. XX P0 A C G T 01 61 36 47 26 N 02 43 32 82 13 N 03 31 9 89 41 G 04 18 2 150 0 G 05 1 0 168 1 G 06 0 1 169 0 G 07 36 106 4 24 C 08 6 7 149 8 G 09 2 0 153 15 G 10 32 13 115 10 G 11 22 20 113 15 G 12 23 82 30 35 N 13 21 66 45 38 N XX BA 170 compiled sequences including 23 TRANSCompel sites XX BS AGTGGGAGGGGTA; R00004; -1; 13;; n. BS GAGGGGTGGAGCT; R00191; -2; 13;; n. BS AGGAGGCGTGGCC; R00275; 7; 13;; p. BS TGGGGGCGGAGCC; R00281; -2; 13;; p. BS ATGGGGCGGGGCT; R00315; 5; 13;; p. BS GGCGGGCGGGATT; R00337; -2; 13;; p. BS CGTGGGCGTGGTA; R00338; -2; 13;; p. BS GCGGGGACTCGGG; R00385; 5; 13;; n. BS TCTGGGCGGGACT; R00447; -4; 13;; n. BS CATGGGTGGAGTT; R00560; 4; 13;; n. BS TGTGGGAGGAGCT; R00610; 3; 13;; p. BS GGGAGGCGTGGCC; R00704; -4; 13;; p. BS GGGCGGAGTGCAG; R01022; 1; 13;; n. BS CCGGGGCGGGGCT; R01039; -2; 13;; p. BS TGGGGGCGGTTCC; R01164; -4; 13;; n. BS AATGGGCGGAACT; R01375; -3; 13;; p. BS ACTGGGCGGAGTT; R01381; -3; 13;; p. BS AATGGGCGGGGTG; R01442; -1; 13;; n. BS TCGGGGCGGCGCG; R01444; -2; 13;; p. BS TCTGGGTGTGGTG; R01484; 6; 13;; p. BS CCGAGGGTGGTTC; R01694; 12; 13;; p. BS CGGGGGCGGCGGC; R01728; -4; 13;; n. BS TCTGAGACGAGCC; R01729; -2; 13;; p. BS AGAGGGCAGGGCG; R01753; -4; 13;; p. BS AGGGGGAGGGGTG; R01754; -1; 13;; p. BS AGGGGGCAGGGGA; R01755; -5; 13;; n. BS CTGGGGAGGGGCA; R01756; -1; 13;; n. BS AAGGGGAGGGGGC; R01758; 1; 13;; n. BS TCCAGGAGGGCCG; R01761; 2; 13;; n. BS CAGGGGTGGGGGG; R01762; 2; 13;; n. BS GCGGGGCGGGTCG; R01763; -1; 13;; n. BS ATGGGGCGGGGCT; R01764; -2; 13;; p. BS TGGGGGCGGGGTC; R01769; 2; 13;; p. BS AGGGGGCGGCACT; R01770; -2; 13;; p. BS ACGGGGCGGGTGA; R01991; -3; 13;; p. BS TCAGGGTGGGGCT; R02010; -3; 13;; n. BS AAGAGGAGGGGCC; R02013; 5; 13;; p. BS TGTGGGAGGAGCT; R02050; -1; 13;; p. BS TGTGGGCGGGGTT; R02381; -1; 13;; n. BS GAGGGGAGGGATG; R02423; 2; 13;; p. BS TGGGGGAGGCGGA; R02424; 7; 13;; n. BS AAGGGGTGGGCTG; R02426; 4; 13;; p. BS CTGGGGCTGGACT; R02428; 5; 13;; p. BS AGGGGGCGGGACC; R02432; 7; 13;; n. BS GAAGGGCGGGAAG; R02433; 5; 13;; n. BS GAGGGGACGGGCA; R02435; 6; 13;; n. BS AGAAGGCGGGTCT; R02436; 7; 13;; n. BS AAGGGGCGTGTGG; R02438; 5; 13;; p. BS AAGGGGAGGGGCG; R02439; 5; 13;; p. BS AGCGGGCGGGGGT; R02440; 4; 13;; p. BS AATGGGTGGTTCT; R02704; -1; 13;; n. BS AGGGGGCGGGACG; R02846; 14; 13;; n. BS AGTGGGTGGAGCC; R02850; 4; 13;; p. BS CCGGGGCGGCGGC; R02857; -2; 13;; p. BS GGCGGGCGGGGGG; R02858; 3; 13;; p. BS ACTGGGCGGGCCA; R02859; -2; 13;; p. BS AGGAGGCGGAGTT; R02860; -3; 13;; p. BS TGGGGGCCGGGCC; R02873; 9; 13;; p. BS TAAGGGCGTAACC; R02922; 1; 13;; p. BS AGGGGGTGGGGTG; R03041; -2; 13;; n. BS AATCGGAGGCTGA; R03042; 2; 13;; n. BS GCAGGGAGGGACT; R03044; -2; 13;; n. BS CGGGGGCCGGGCC; R03051; -2; 13;; p. BS CGGGGGCGGGGTC; R03052; -2; 13;; p. BS CGGGGGCAGGGCC; R03053; -1; 13;; n. BS CAGGGGTGGAGTC; R03118; 4; 13;; n. BS AAGAGGCGGGCTG; R03281; 1; 13;; p. BS AGTGGGCGGAGCC; R03308; 2; 13;; p. BS GGGGGGCGGAGGG; R03361; 1; 13;; n. BS CAGGGGTGTGGCA; R03367; 9; 13;; n. BS AGAGGGCAGGGCC; R03373; 4; 13;; n. BS AAGGGGAGGAGCC; R03486; 7; 13;; n. BS AAGAGGCGGGGCC; R03868; 3; 13;; p. BS CGGGGGCGGTGCC; R04005; -1; 13;; p. BS GGGGGGCGGGGCC; R04007; 6; 13;; p. BS GGAAGGCGGGGTC; R04008; 4; 13;; p. BS CGTGGGCGGGGCT; R04009; 9; 13;; p. BS AGTGGGCGTGGTT; R04025; -1; 13;; p. BS CAGGGGCCGGCGG; R04195; -2; 13;; p. BS CGGAGGCGGAGGC; R04282; 3; 13;; p. BS GGAGGGCGGTCCC; R04375; -2; 13;; p. BS GGTGGGCGGGATC; R04407; 7; 13;; p. BS GAGGGGAGGGGAC; R04421; 9; 13;; p. BS AAGAGGAGGGACA; R04422; 5; 13;; p. BS GGAGGGAGGCGAG; R04426; -5; 13;; p. BS CCTGGGCGGCGCA; R04431; -2; 13;; p. BS GAGGGGTTGTCGT; R04456; 10; 13;; n. BS GGGGGGAGGAGCT; R04493; 8; 13;; n. BS AGGGGGAGGGAAG; R04625; 3; 13;; n. BS AAAGGGCGGGGCA; R04668; 11; 13;; p. BS CGTGGGAGGGGCG; R04669; 8; 13;; n. BS GGGGGGCGGGGCC; R04679; 2; 13;; p. BS AGGGGGCGGGGCG; R04680; -1; 13;; p. BS GTTGGGCGGGCTC; R04701; 2; 13;; n. BS AGAGGGCGGAGGC; R04716; 19; 13;; n. BS CCGGGGCGTGGGC; R04734; 6; 13;; p. BS GGGGGGTGGGGAA; R04741; -2; 13;; n. BS GGCGGGAGGGGAG; R04752; 1; 13;; p. BS CGCGGGCGGCGCC; R04790; -3; 13;; p. BS AGTGGGCGTGTGC; R04794; 6; 13;; p. BS GGGGGGCGGGGAG; R04795; -2; 13;; p. BS GCGGGGCGGGGGC; R04829; 3; 13;; p. BS AGAGGGCGGGCCC; R04830; 2; 13;; p. BS CGGGGGCGGGGGC; R04834; -1; 13;; n. BS GTAGGGAGGAGCT; R04852; 6; 13;; n. BS AAAGGGCGGGGGA; R04875; 6; 13;; p. BS CCCGGGCGGGGGG; R04883; 1; 13;; p. BS GGGGGGCGGGCCC; R04915; 9; 13;; n. BS GGTGGGTGGAGCC; R04918; 7; 13;; p. BS TGGGGGCGGGGCC; R04930; 1; 13;; p. BS CGGGGGCGGGGCC; R04966; 8; 13;; p. BS GAGGGGCGGGGGG; R04968; 5; 13;; p. BS GGGGGGCGGGAAG; R04969; 7; 13;; p. BS TGAGTCTGGGAGG; R04979; 3; 13;; p. BS ACAGGGCGGTCAG; R04982; -2; 13;; n. BS TGAGGGTGGGATT; R04995; 1; 13;; n. BS GAAAGGCGGGAAA; R04996; 12; 13;; p. BS TAGGGGAGGGGAC; R04997; 2; 13;; p. BS AAGAGGCTGGGCC; R04998; 7; 13;; p. BS CCTGGGAGGGGCA; R05000; 3; 13;; n. BS TCTGGGTGGACAG; R05001; 11; 13;; n. BS GCAGGGGGGATGG; R05003; 7; 13;; n. BS GTAGGGAGGGGCC; R08095; 6; 13;; n. BS GGAAGGTGGGCCT; R08207; -4; 13;; p. BS GGAGGGAGGGATC; R08503; -1; 13;; p. BS AGGAGGCGGAGCT; R09485; -2; 13;; n. BS ACGGGGCGGGGTC; R09487; -4; 13;; n. BS AGGGGGCTGGGCC; R09488; -2; 13;; n. BS GCTGGGAGGGCCC; R09489; -7; 13;; n. BS AGAGGGCGGGGCC; R09490; -4; 13;; n. BS CCTGGGCGTGGGC; R11274; 19; 13;; p. BS ATGGGGCGGAACC; R11589; 6; 13;; p. BS GGCGGGCGGCCAG; R11778; 4; 13;; p. BS CCCGGGCGTTCCC; R12093; 3; 13;; p. BS AAGGGGCTGGTTC; R12971; 7; 13;; p. BS TGGGGGCGGGAGC; R12973; 6; 13;; n. BS CAGGGGAGGAGGG; R12978; 6; 13;; p. BS GCTGGGCGGGGCT; R13050; 3; 13;; n. BS CAGGGGTGGGGAA; R13166; 4; 13;; p. BS TAGGGGCAGGGAT; R13212; 3; 13;; n. BS ATTGGGGGGCGTG; R13258; -3; 13;; p. BS GCGGGGCGGGGCG; R13261; -3; 13;; p. BS CTGGGGTGGGGCT; R13276; 4; 13;; p. BS GCGGGGCAACCTC; R13302; 3; 13;; p. BS CGTGGGCGGGGCG; R13304; -2; 13;; n. BS TGTGGGCCGGCCT; R13318; -1; 13;; n. BS AGGGGGTGGGGAT; R13413; 4; 13;; n. BS CATGGGTGGGCCT; C00006, s00009; -4; 13;; p. BS AATGGGTGGTTCC; C00007, s00010; -4; 13;; n. BS GGGGGGCGGGGAG; C00027, s00016; -4; 13;; n. BS AAAGGGCGGGGCA; C00039, s00059; -3; 13;; p. BS AGTGGGCGAGGCA; C00136, s00208; -3; 13;; n. BS AGAGGGCGGGTCG; C00179, s00290; -3; 13;; p. BS AGTGGGCGGAGTG; C00180, s00292; -2; 13;; p. BS AGGGGGAGGAGTT; C00204, s00339; -4; 13;; n. BS TCTGGGAGGAGCT; C00218, s00365; -1; 13;; p. BS TTGGGGCGGGGGA; C00221, s00371; -4; 13;; n. BS GAAGGGCGGGGAC; C00255, s00430; 1; 13;; p. BS AAAGGGTGGGGTT; C00256, s00432; -2; 13;; p. BS GGTGGGCTGGTTG; C00271, s00460; -7; 13;; n. BS GGTGGGCTGGTTG; C00273, s00465; -7; 13;; n. BS AGGAGGAGGAGCC; C00275, s00469; 1; 13;; n. BS CAGGGGAGGGGAC; C00281, s00481; 1; 13;; n. BS CTGGGGCGTGGAC; C00283, s00486; -3; 13;; p. BS AAGGGGCGGTGCT; C00299, s00522; -4; 13;; n. BS AGAGGGCGGAGTC; C00319, s00559; 1; 13;; n. BS GGAAGGGGGTGAC; C00325, s00566; -4; 13;; p. BS CTGGGGCGGGGTC; C00327, s00571; -2; 13;; n. BS TCTGGGCGGAAAC; C00355, s00616; -3; 13;; p. BS GAAGGGCGGAGCG; C00359, s00624; -4; 13;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00933 XX ID V$SP1_Q2_01 XX DT 31.08.2003 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA Sp1 XX BF T00754; Sp1; Species: rat, Rattus norvegicus. BF T00752; Sp1; Species: mouse, Mus musculus. BF T00759; Sp1; Species: human, Homo sapiens. BF T02356; Sp2; Species: human, Homo sapiens. BF T02453; Sp3; Species: rat, Rattus norvegicus. BF T02338; Sp3; Species: human, Homo sapiens. BF T02339; Sp4; Species: human, Homo sapiens. XX P0 A C G T 01 9 71 10 13 C 02 3 75 10 15 C 03 10 93 0 0 C 04 6 88 5 4 C 05 16 3 61 23 G 06 1 102 0 0 C 07 0 103 0 0 C 08 0 89 0 14 C 09 21 62 5 15 C 10 9 49 21 24 N XX BA 103 compiled sequences XX BS CTCCACCCCT; R00191; 1; 10;; p. BS CCACGCCTCC; R00275; 8; 10;; n. BS CCCCGCCCCA; R00315; 6; 10;; n. BS CGAGTCCCCG; R00385; 7; 10;; p. BS TCCCGCCCAG; R00447; -2; 10;; p. BS CTCCACCCAT; R00560; 6; 10;; p. BS CCACGCCTCC; R00704; -3; 10;; n. BS TTCCGCCCAT; R01375; -2; 10;; n. BS CTCCGCCCAG; R01381; -2; 10;; n. BS CCCCGCCCAT; R01442; 2; 10;; p. BS CGCCGCCCCG; R01444; -1; 10;; n. BS CCACACCCAG; R01484; 7; 10;; n. BS ACCACCCTCG; R01694; 13; 10;; n. BS CGCCGCCCCC; R01728; -2; 10;; p. BS CCCTGCCCTC; R01753; -3; 10;; n. BS CCCCTCCCCC; R01754; 1; 10;; n. BS CCCTGCCCCC; R01755; -3; 10;; p. BS CCCCTCCCCA; R01756; 2; 10;; p. BS CCCCTCCCCT; R01758; 3; 10;; p. BS GCCCTCCTGG; R01761; 4; 10;; p. BS CCCCACCCCT; R01762; 4; 10;; p. BS ACCCGCCCCG; R01763; 2; 10;; p. BS CCCCGCCCCA; R01764; -1; 10;; n. BS CCCCGCCCCC; R01769; 3; 10;; n. BS TGCCGCCCCC; R01770; -1; 10;; n. BS CCCCACCCTG; R02010; -1; 10;; p. BS CCCCTCCTCT; R02013; 6; 10;; n. BS CCCCGCCCAC; R02381; 2; 10;; p. BS TCCCTCCCCT; R02423; 3; 10;; n. BS CGCCTCCCCC; R02424; 9; 10;; p. BS GCCCACCCCT; R02426; 5; 10;; n. BS TCCAGCCCCA; R02428; 6; 10;; n. BS TCCCGCCCCC; R02432; 9; 10;; p. BS TCCCGCCCTT; R02433; 7; 10;; p. BS CCCGTCCCCT; R02435; 8; 10;; p. BS ACCCGCCTTC; R02436; 9; 10;; p. BS ACACGCCCCT; R02438; 6; 10;; n. BS CCCCTCCCCT; R02439; 6; 10;; n. BS CCCCGCCCGC; R02440; 5; 10;; n. BS AACCACCCAT; R02704; 2; 10;; p. BS CTCCACCCAC; R02850; 5; 10;; n. BS CGCCGCCCCG; R02857; -1; 10;; n. BS CCCCGCCCGC; R02858; 4; 10;; n. BS GCCCGCCCAG; R02859; -1; 10;; n. BS CTCCGCCTCC; R02860; -2; 10;; n. BS CCCGGCCCCC; R02873; 10; 10;; n. BS CCCCACCCCC; R03041; 1; 10;; p. BS CCCGGCCCCC; R03051; -1; 10;; n. BS CCCCGCCCCC; R03052; -1; 10;; n. BS CCCTGCCCCC; R03053; 2; 10;; p. BS CTCCACCCCT; R03118; 6; 10;; p. BS CCACACCCCT; R03367; 11; 10;; p. BS CCCTGCCCTC; R03373; 6; 10;; p. BS CTCCTCCCCT; R03486; 9; 10;; p. BS CACCGCCCCC; R04005; 1; 10;; n. BS CCCCGCCCCC; R04007; 7; 10;; n. BS CCCCGCCTTC; R04008; 5; 10;; n. BS CCCCGCCCAC; R04009; 10; 10;; n. BS CCACGCCCAC; R04025; 1; 10;; n. BS CTCCGCCTCC; R04282; 4; 10;; n. BS CCCCTCCCCT; R04421; 10; 10;; n. BS TCCCTCCTCT; R04422; 6; 10;; n. BS CGCCTCCCTC; R04426; -4; 10;; n. BS CGCCGCCCAG; R04431; -1; 10;; n. BS CTCCTCCCCC; R04493; 10; 10;; p. BS TCCCTCCCCC; R04625; 5; 10;; p. BS CCCCTCCCAC; R04669; 10; 10;; p. BS CCCCGCCCCC; R04679; 3; 10;; n. BS CCCCGCCCCC; R04680; 1; 10;; n. BS GCCCGCCCAA; R04701; 4; 10;; p. BS CTCCGCCCTC; R04716; 21; 10;; p. BS CCACGCCCCG; R04734; 7; 10;; n. BS CCCCACCCCC; R04741; 1; 10;; p. BS ACACGCCCAC; R04794; 7; 10;; n. BS CCCCGCCCCC; R04795; -1; 10;; n. BS CCCCGCCCCG; R04829; 4; 10;; n. BS GCCCGCCCTC; R04830; 3; 10;; n. BS CCCCGCCCCC; R04834; 2; 10;; p. BS ACCCACCCCA; R04918; 4; 10;; n. BS CCCAGACTCA; R04979; 3; 10;; n. BS TCCCACCCTC; R04995; 3; 10;; p. BS TCCCGCCTTT; R04996; 13; 10;; n. BS CCCCTCCCCT; R04997; 3; 10;; n. BS CCCAGCCTCT; R04998; 8; 10;; n. BS CCCCTCCCAG; R05000; 5; 10;; p. BS GTCCACCCAG; R05001; 13; 10;; p. BS ATCCCCCCTG; R05003; 9; 10;; p. BS CCCCTCCCTA; R08095; 8; 10;; p. BS TCCCTCCCTC; R08503; 1; 10;; n. BS CTCCGCCTCC; R09485; 1; 10;; p. BS CCCCGCCCCG; R09487; -2; 10;; p. BS CCCAGCCCCC; R09488; 1; 10;; p. BS GCCCTCCCAG; R09489; -5; 10;; p. BS CCCCGCCCTC; R09490; -2; 10;; p. BS GGCCGCCCGC; R11778; 5; 10;; n. BS GAACGCCCGG; R12093; 4; 10;; n. BS ACCAGCCCCT; R12971; 8; 10;; n. BS TCCCGCCCCC; R12973; 8; 10;; p. BS CTCCTCCCCT; R12978; 7; 10;; n. BS CGCCCCCCAA; R13258; -2; 10;; n. BS CCCCGCCCCG; R13261; -2; 10;; n. BS GCCGGCCCAC; R13318; 2; 10;; p. BS CCCCACCCCC; R13413; 6; 10;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00934 XX ID I$ZESTE_Q2_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA Zeste XX BF T00918; Zeste; Species: fruit fly, Drosophila melanogaster. BF T02100; Zeste; Species: fruit fly, Drosophila virilis. XX P0 A C G T 01 8 5 5 6 N 02 11 2 3 8 W 03 6 2 7 9 N 04 3 2 1 18 T 05 0 5 1 18 T 06 0 0 24 0 G 07 24 0 0 0 A 08 0 0 24 0 G 09 1 4 0 19 T 10 0 1 22 1 G 11 10 3 8 3 N XX BA 24 compiled sequences XX BS CTCTTGAGTGT; R01518; -1; 11;; n. BS TTTTTGAGCGC; R01521; 4; 11;; n. BS GTTTTGAGCGT; R01523; -2; 11;; p. BS AAAACGAGTGG; R01525; 5; 11;; n. BS GAGTCGAGTGA; R01527; -5; 11;; p. BS CAGGCGAGTGA; R01599; 2; 11;; p. BS CATTTGAGTGA; R04938; 2; 11;; p. BS TGGTTGAGTGA; R04939; -1; 11;; n. BS TCACTGAGCGA; R04940; -4; 11;; p. BS AAAATGAGTGA; R04941; -4; 11;; p. BS AGGTTGAGTGG; R04942; -1; 11;; n. BS AAGCTGAGTGG; R04943; -1; 11;; n. BS ATTTTGAGTGA; R04944; -1; 11;; n. BS ACTTTGAGTGG; R04945; -1; 11;; n. BS CTTTTGAGTGC; R04946; -4; 11;; p. BS AAATTGAGTCG; R04947; -4; 11;; p. BS GAAATGAGATA; R04948; -4; 11;; p. BS AAGTCGAGTGA; R04949; 4; 11;; n. BS GATTGGAGTGC; R04950; -1; 11;; n. BS GTTTTGAGTGG; R04953; -1; 11;; n. BS TGGTTGAGTGT; R04954; -4; 11;; p. BS CTCTTGAGTGG; R04955; -1; 11;; n. BS TATTCGAGTGA; R04956; -4; 11;; p. BS TTATTGAGCGG; R04958; -4; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00935 XX ID V$NFAT_Q4_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA NF-AT XX BF T00550; NF-AT1; Species: human, Homo sapiens. BF T01944; NF-AT1; Species: mouse, Mus musculus. BF T01948; NF-AT1; Species: human, Homo sapiens. BF T05171; NF-AT1; Species: rat, Rattus norvegicus. BF T01945; NF-AT2; Species: human, Homo sapiens. BF T01947; NF-AT2; Species: mouse, Mus musculus. BF T02462; NF-AT3; Species: human, Homo sapiens. BF T01946; NF-AT4; Species: human, Homo sapiens. XX P0 A C G T 01 6 7 12 6 N 02 9 5 1 16 W 03 0 0 31 0 G 04 1 0 30 0 G 05 31 0 0 0 A 06 29 0 2 0 A 07 27 2 0 2 A 08 12 8 4 7 N 09 9 4 2 16 W 10 3 11 5 12 N XX BA 31 compiled sequences including 8 TRANSCompel sites XX BS GAGGAAAAAC; R00931; 2; 10;; p. BS GAGGAAAATT; R02348; -2; 10;; p. BS GAGGAAAAAC; R02349; -2; 10;; p. BS GAGGAAATGA; R05034; 12; 10;; n. BS CTGGAATTTC; R05049; 4; 10;; n. BS TTGAAAATAT; R05051; -1; 10;; p. BS CTGGAAAAAT; R05053; 3; 10;; n. BS GTGGAAAAAG; R05054; 16; 10;; n. BS ATGGAAAATG; R05055; 10; 10;; p. BS CTGGAAAACT; R05072; 16; 10;; n. BS TTGGAAAATT; R05080; -1; 10;; n. BS TCGGAGCCCC; R05082; 6; 10;; p. BS ATGGAAAGAT; R05090; 12; 10;; n. BS GAGGAAAGCA; R05092; 16; 10;; n. BS TAGGAAACAG; R05094; 19; 10;; n. BS GAGGAAATGA; R05096; 12; 10;; n. BS CTGGAAACCC; R05097; 4; 10;; p. BS TTGGAAATTT; R08170; 10; 10;; n. BS CTGGAAATTT; R08184; 9; 10;; n. BS AAGGAAAAAG; R13243; -1; 10;; p. BS ATGGAACATT; R13414; 2; 10;; n. BS CCGGAAACTT; R13436; 20; 10;; n. BS TTGGAAATTC; R13475; 4; 10;; p. BS GTGGAGAAAC; C00144, s00224; 3; 10;; n. BS AGGGAAAATG; C00162, s00258; -1; 10;; n. BS CTGGAAAGTC; C00350, s00610; -3; 10;; n. BS GCGGAAAGTC; C00351, s00611; -3; 10;; n. BS GTGGAATCTC; C00352, s00612; -4; 10;; n. BS AAGGAAACTC; C00354, s00614; -1; 10;; p. BS GCGGAAACTT; C00355, s00617; -2; 10;; p. BS GCGGAAACTT; C00356, s00619; -2; 10;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00936 XX ID P$HBPA1_Q6_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA HBP-1a XX BF T00937; HBP-1a; Species: wheat, Triticum aestivum. XX P0 A C G T 01 0 2 5 0 G 02 2 3 0 2 H 03 0 5 0 2 C 04 6 0 1 0 A 05 0 7 0 0 C 06 0 0 7 0 G 07 0 1 0 6 T 08 0 7 0 0 C 09 7 0 0 0 A 10 0 4 2 1 C XX BA 7 compiled sequences XX BS GCCACGTCAC; R00679; 5; 10;; p. BS CATACGTCAG; R01609; 12; 10;; p. BS CTTACGTCAG; R01915; -1; 10;; n. BS GCCACGTCAC; R03283; 7; 10;; n. BS GCCACGTCAC; R03284; 5; 10;; p. BS GACACGTCAT; R03285; 7; 10;; n. BS GTCGCGCCAC; R03678; 7; 10;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00937 XX ID P$TGA1A_Q2_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA TGA1a XX BF T00829; TGA1a; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 1 0 2 5 T 02 1 1 2 4 T 03 2 0 5 1 G 04 6 0 1 1 A 05 2 0 0 6 T 06 1 0 7 0 G 07 8 0 0 0 A 08 0 7 0 1 C 09 2 0 3 3 D 10 1 2 0 5 T 11 4 1 2 1 A 12 2 2 1 3 N 13 2 2 2 2 N 14 3 3 0 2 H 15 2 1 1 4 T 16 8 0 0 0 A 17 2 3 2 1 N 18 1 3 3 1 N 19 3 0 1 4 W 20 2 3 2 1 N 21 0 0 0 8 T 22 0 4 0 4 Y XX BA 8 compiled sequences XX BS TTGGTGACGTGGCCGAAAGCTT; R00679; -5; 22;; n. BS GTGATGACTCATTCTACGTGTC; R08435; -10; 22;; n. BS GTGATGACTCATTCTACGTGTC; R09152; 1; 22;; n. BS AATTTAATGAGTCATATTTTTT; R09153; 8; 22;; p. BS TGAAAGACATACGTAAGCACTT; R13401; 12; 22;; n. BS TGAAAGACATACGTAAGCACTT; R13402; 12; 22;; n. BS TTGATGACTTCAAACACGAATC; R13403; 6; 22;; p. BS TCGATGACGTTAAATAACTATC; R13404; -7; 22;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00938 XX ID V$E2F1_Q3_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA E2F-1 XX BF T01542; E2F-1; Species: human, Homo sapiens. XX P0 A C G T 01 2 0 2 7 T 02 0 2 3 6 T 03 2 3 6 0 G 04 1 1 9 0 G 05 0 11 0 0 C 06 0 0 11 0 G 07 0 9 2 0 C 08 0 3 7 1 G 09 6 1 4 0 R 10 6 2 2 1 A 11 8 1 1 1 A 12 3 4 2 2 N 13 3 3 4 1 N 14 0 1 10 0 G 15 3 3 4 1 N 16 4 5 2 0 M XX BA 11 compiled sequences including 1 TRANSCompel sites XX BS TGCGCGCGGAACCGGC; R04352; -5; 16;; n. BS ACCGCGGGAAAACGTC; R08635; -5; 16;; n. BS ACCGCGCCGCCCCGAC; R08861; 1; 16;; n. BS TTGACGCTGTTAAGCC; R08862; 8; 16;; n. BS TTGGCGGGAGATAGGA; R09599; 2; 16;; p. BS TTGGCGCCAAACGGAA; R09603; -5; 16;; n. BS TTACCGCGAAAGGCCG; R09604; -3; 16;; p. BS GGAGCGCGGGGCGGGG; R09627; 1; 16;; n. BS GTGGCGCCCCAGGGGC; R09628; 4; 16;; p. BS TGGGCGCGAAAAAGAA; R09798; -5; 16;; n. BS TTGGCGCGAAATTGCA; C00226, s00381; -5; 16;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00939 XX ID V$E2F1_Q4_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA E2F-1 XX BF T01548; DP-1; Species: human, Homo sapiens. BF T00221; E2F; Species: human, Homo sapiens. BF T04056; E2F; Species: mouse, Mus musculus. BF T04747; E2F; Species: rat, Rattus norvegicus. BF T00232; E2F+E4; Species: human, Homo sapiens. BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. BF T01545; E2F-3a; Species: human, Homo sapiens. BF T01546; E2F-4; Species: human, Homo sapiens. XX P0 A C G T 01 2 6 1 22 T 02 1 0 2 28 T 03 1 3 1 26 T 04 1 12 18 0 S 05 0 5 26 0 G 06 0 31 0 0 C 07 0 0 31 0 G 08 0 19 12 0 S 09 1 5 20 5 G XX BA 31 compiled sequences including 1 TRANSCompel sites XX BS TTTCGCGCG; R00310; 5; 9;; p. BS TTTGGCGCG; R01801; 4; 9;; n. BS TTCCGCGCG; R04352; 1; 9;; p. BS TTTCGCGCG; R08507; 2; 9;; p. BS TTTGGCGCA; R08508; 1; 9;; p. BS TTTCCCGCG; R08635; 1; 9;; p. BS TTTCGCGCT; R08679; 1; 9;; p. BS ATTGGCGCG; R08798; 1; 9;; p. BS CTTAGCGCT; R08807; -1; 9;; n. BS TTTGGCGCG; R08811; 4; 9;; n. BS TTTGGCGCG; R08817; 4; 9;; n. BS CGGGGCGGC; R08861; 3; 9;; p. BS TAAGCCGGT; R08862; 5; 9;; n. BS CTTGGCGGG; R08900; -1; 9;; p. BS TTTGGCGGG; R09542; 1; 9;; p. BS TTTGGCGGG; R09543; 1; 9;; p. BS TTTGGCGGG; R09584; 1; 9;; p. BS GTTCGCGGG; R09586; 2; 9;; p. BS CTTGGCGGG; R09599; 1; 9;; p. BS TTTGGCGGG; R09600; 1; 9;; p. BS TTTGGCGCG; R09601; 1; 9;; p. BS TTTGGCGCC; R09603; 1; 9;; p. BS TTTCGCGGT; R09604; -1; 9;; n. BS ATTCCCGCG; R09626; -1; 9;; n. BS CTCCCCGGC; R09627; 13; 9;; p. BS CGTGGCGCC; R09628; 3; 9;; p. BS TTTCGCGCC; R09798; 1; 9;; p. BS TTTCGCGCG; R09803; 1; 9;; p. BS TTTGGCGGG; R11777; 1; 9;; p. BS TTTCCCGCT; R13183; 12; 9;; p. BS TTCGGCGCG; C00119, s00175; 1; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00940 XX ID V$E2F1_Q6_01 XX DT 31.08.2003 (created); dtc. DT 11.09.2003 (updated); ddt. CO Copyright (C), Biobase GmbH. XX NA E2F-1 XX BF T01542; E2F-1; Species: human, Homo sapiens. BF T01543; E2F-1; Species: mouse, Mus musculus. XX P0 A C G T 01 5 1 7 6 N 02 1 2 2 14 T 03 2 1 1 15 T 04 1 3 0 15 T 05 0 13 6 0 C 06 0 6 13 0 G 07 0 19 0 0 C 08 0 0 19 0 G 09 0 13 6 0 C 10 0 10 6 3 S XX BA 19 compiled sequences including 1 TRANSCompel sites XX BS TTTTCGCGCT; R00326; 7; 10;; n. BS GTTTCGCGCC; R00329; 6; 10;; n. BS GTTTGGCGCC; R04349; -1; 10;; p. BS GTTCCGCGCG; R04352; -1; 10;; p. BS TTTTCCCGCG; R08635; -1; 10;; p. BS GGACCGCGCC; R08861; 9; 10;; n. BS TTAAGCCGGT; R08862; 5; 10;; n. BS TTTTCCCGCC; R08900; 3; 10;; n. BS GTTTGGCGGG; R09542; -1; 10;; p. BS ATTTGGCGGG; R09543; -1; 10;; p. BS AGTTCGCGGG; R09586; 1; 10;; p. BS ATCTCCCGCC; R09599; 4; 10;; n. BS GTTTGGCGCC; R09603; -1; 10;; p. BS CTTTCGCGGT; R09604; -1; 10;; n. BS AATTCCCGCG; R09626; -1; 10;; n. BS GCTCCCCGGC; R09627; 12; 10;; p. BS TCGTGGCGCC; R09628; 2; 10;; p. BS TTTTCGCGCC; R09798; -1; 10;; p. BS ATTTCGCGCC; C00226, s00381; -1; 10;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00941 XX ID V$MEF2_Q6_01 XX DT 31.08.2003 (created); dtc. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA MEF-2 XX BF T00505; aMEF-2; Species: mouse, Mus musculus. BF T01006; aMEF-2; Species: human, Homo sapiens. BF T01005; MEF-2A; Species: human, Homo sapiens. BF T01004; MEF-2A; Species: rat, Rattus norvegicus. BF T01769; MEF-2C/delta8; Species: mouse, Mus musculus. BF T01770; MEF-2DAB; Species: human, Homo sapiens. XX P0 A C G T 01 4 0 6 3 R 02 0 2 10 1 G 03 0 9 0 4 C 04 0 1 0 12 T 05 10 1 0 2 A 06 0 0 0 13 T 07 5 0 0 8 W 08 1 0 0 12 T 09 2 0 0 11 T 10 4 0 0 9 T 11 11 0 2 0 A 12 5 1 5 2 R XX BA 13 compiled sequences XX BS TCCTCTTTTAGA; R00198; 6; 12;; n. BS GGTTATTTTTAG; R00244; 17; 12;; n. BS GGTTATTTTTAA; R03584; 3; 12;; p. BS GGTTATAATTAA; R03585; 3; 12;; p. BS TGCTATTTTAAA; R03586; 5; 12;; n. BS AGTTATTTTTAA; R03587; 5; 12;; n. BS GGCCTTTTTTAG; R03588; 5; 12;; n. BS TTCTATATATAC; R03589; 3; 12;; p. BS GGCTATTTTAAG; R04212; -2; 12;; p. BS AGCTTTATATAT; R08511; 3; 12;; n. BS ACCTATATTTAG; R09176; 1; 12;; n. BS AGCTATTTTAGG; R09235; 2; 12;; n. BS GGCTATATTTAT; R09469; 3; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00942 XX ID P$CPRF1_01 XX DT 05.09.2003 (created); ela. CO Copyright (C), Biobase GmbH. XX NA CPRF-1 XX BF T01091; CPRF-1; Species: parsley, Petroselinum crispum (P. hortense). XX P0 A C G T 01 0 0 2 2 K 02 2 2 0 0 M 03 0 5 0 0 C 04 5 0 0 0 A 05 0 5 0 0 C 06 0 0 5 0 G 07 0 0 0 5 T 08 0 0 5 0 G 09 0 0 2 2 K 10 2 2 0 0 M XX BA 5 selected sites XX BS GACACGTGTC; R08682; 1; 10;; p. BS TCCACGTGGA; R08683; 1; 10;; p. BS TACACGTGTA; R08684; 1; 10;; p. BS GCCACGTGGC; R08691; 1; 10;; p. BS NNCACGTGNN; R08696; 1; 10;; p. XX // AC M00943 XX ID P$TAF1_01 XX DT 05.09.2003 (created); ela. CO Copyright (C), Biobase GmbH. XX NA TAF-1 XX BF T01090; TAF-1; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 3 3 7 2 N 02 3 7 1 4 N 03 2 10 4 1 C 04 16 1 0 0 A 05 0 16 1 0 C 06 0 0 16 1 G 07 0 0 1 16 T 08 0 4 13 0 G 09 3 1 8 3 N 10 2 6 4 3 N XX BA 17 selected sites XX BS GCCACGTGGC; R08680; 1; 10;; p. BS GACACGTGTC; R08682; 1; 10;; p. BS TCCACGTGGA; R08683; 1; 10;; p. BS TACACGTGTA; R08684; 1; 10;; p. BS CCCACGTGGG; R08687; 1; 10;; p. BS ACCACGTGGT; R08689; 1; 10;; p. BS AACACGTGTT; R08690; 1; 10;; p. BS GCCACGTGGC; R08691; 1; 10;; p. BS GTGACGTCAC; R08692; 1; 10;; p. BS CTGACGTCAG; R08693; 1; 10;; p. BS ATGACGTCAT; R08694; 1; 10;; p. BS NNGACGTCNN; R08695; 1; 10;; p. BS NNCACGTGNN; R08696; 1; 10;; p. BS GTACGTGGCG; R09159; 1; 10;; p. BS GCAACGTGGC; R09850; 1; 10;; p. BS GCCACGTGGC; R09851; 1; 10;; p. BS CGTACGTGGG; R09852; 1; 10;; p. XX // AC M00944 XX ID P$CPRF3_01 XX DT 05.09.2003 (created); ela. CO Copyright (C), Biobase GmbH. XX NA CPRF-3 XX BF T01093; CPRF-3. XX P0 A C G T 01 1 1 3 2 N 02 2 2 0 3 H 03 0 5 4 0 S 04 9 0 0 0 A 05 0 9 0 0 C 06 0 0 9 0 G 07 0 0 0 9 T 08 0 4 5 0 S 09 3 0 2 2 D 10 2 3 1 1 N XX BA 9 selected sites XX BS GACACGTGTC; R08682; 1; 10;; p. BS TCCACGTGGA; R08683; 1; 10;; p. BS TACACGTGTA; R08684; 1; 10;; p. BS GCCACGTGGC; R08691; 1; 10;; p. BS GTGACGTCAC; R08692; 1; 10;; p. BS CTGACGTCAG; R08693; 1; 10;; p. BS ATGACGTCAT; R08694; 1; 10;; p. BS NNGACGTCNN; R08695; 1; 10;; p. BS NNCACGTGNN; R08696; 1; 10;; p. XX // AC M00945 XX ID P$CPRF2_01 XX DT 05.09.2003 (created); ela. CO Copyright (C), Biobase GmbH. XX NA CPRF-2 XX BF T01092; CPRF-2. XX P0 A C G T 01 3 3 3 2 N 02 3 4 0 4 H 03 0 9 4 1 C 04 14 0 0 0 A 05 0 14 0 0 C 06 0 0 14 0 G 07 0 0 0 14 T 08 1 4 9 0 G 09 4 0 4 3 D 10 2 3 3 3 N XX BA 14 selected sites XX BS GACACGTGTC; R08682; 1; 10;; p. BS TCCACGTGGA; R08683; 1; 10;; p. BS TACACGTGTA; R08684; 1; 10;; p. BS CTCACGTGAG; R08686; 1; 10;; p. BS CCCACGTGGG; R08687; 1; 10;; p. BS ACCACGTGGT; R08689; 1; 10;; p. BS AACACGTGTT; R08690; 1; 10;; p. BS GCCACGTGGC; R08691; 1; 10;; p. BS GTGACGTCAC; R08692; 1; 10;; p. BS CTGACGTCAG; R08693; 1; 10;; p. BS ATGACGTCAT; R08694; 1; 10;; p. BS NNGACGTCNN; R08695; 1; 10;; p. BS NNCACGTGNN; R08696; 1; 10;; p. BS NNTACGTANN; R08697; 1; 10;; p. XX // AC M00946 XX ID P$TGA1B_01 XX DT 05.09.2003 (created); ela. CO Copyright (C), Biobase GmbH. XX NA TGA1b XX BF T00830; TGA1b; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 1 0 3 0 D 02 1 1 0 2 H 03 0 3 3 0 S 04 6 0 0 0 A 05 0 6 0 0 C 06 0 0 6 0 G 07 0 0 0 6 T 08 0 3 3 0 S 09 2 0 1 1 D 10 0 3 0 1 B XX BA 6 selected sites XX BS GACACGTGTC; R08682; 1; 10;; p. BS GCCACGTGGC; R08691; 1; 10;; p. BS GTGACGTCAC; R08692; 1; 10;; p. BS ATGACGTCAT; R08694; 1; 10;; p. BS NNGACGTCNN; R08695; 1; 10;; p. BS NNCACGTGNN; R08696; 1; 10;; p. XX // AC M00947 XX ID V$CP2_02 XX DT 13.10.2003 (created); oke. DT 13.10.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA CP2/LBP-1c/LSF XX BF T00152; CP2; Species: mouse, Mus musculus. BF T00155; CP2; Species: mouse, Mus musculus. BF T02527; CP2; Species: mouse, Mus musculus. BF T00151; CP2a; Species: human, Homo sapiens. BF T00474; CP2a; Species: human, Homo sapiens. BF T01204; CP2a; Species: human, Homo sapiens. XX P0 A C G T 01 5 0 11 3 G 02 0 17 2 0 C 03 2 0 0 17 T 04 0 0 17 2 G 05 0 1 18 0 G 06 2 3 6 8 N 07 1 2 1 15 T 08 4 6 2 7 N 09 2 3 10 4 G 10 6 6 4 3 N 11 5 1 9 4 N 12 0 17 2 0 C 13 1 6 2 10 Y 14 5 1 8 5 N 15 0 5 14 0 G XX BA 19 binding sites from 11 genes XX RN [1]; RE0017867. RX PUBMED: 11673232. RA Frith M. C., Hansen U., Weng Z. RT Detection of cis-element clusters in higher eukaryotic DNA RL Bioinformatics 17:878-889 (2001). XX // AC M00948 XX ID P$PCF2_01 XX DT 29.10.2003 (created); rhe_cga. DT 11.11.2003 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA PCF2 XX BF T05573; PCF2; Species: rice, Oryza sativa. XX P0 A C G T 01 15 14 11 24 N 02 16 14 30 14 N 03 3 1 66 6 G 04 3 6 65 2 G 05 17 19 25 15 N 06 2 71 2 1 C 07 0 73 3 0 C 08 0 75 0 1 C 09 64 1 8 3 A 10 1 66 2 7 C XX BA 76 selected sequences XX CC 5 rounds of selection with in-vitro-translated protein XX RN [1]; RE0023449. RX PUBMED: 12000681. RA Kosugi S., Ohashi Y. RT DNA binding and dimerization specificity and potential targets for the TCP protein family. RL Plant J. 30:337-348 (2002). XX // AC M00949 XX ID P$AGL15_01 XX DT 06.11.2003 (created); rhe_cga. DT 13.02.2004 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AGL15 XX BF T03018; AGL15; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 5 4 3 20 T 02 4 2 1 25 T 03 16 2 4 10 W 04 0 32 0 0 C 05 1 15 0 16 Y 06 17 4 1 10 W 07 10 3 2 17 W 08 17 0 1 14 W 09 13 0 0 19 W 10 19 1 2 10 W 11 8 1 4 19 T 12 19 0 12 1 R 13 0 0 31 1 G 14 9 5 4 14 N 15 26 1 1 4 A 16 19 3 4 6 A XX BA 32 selected sequences XX CC 3 to 5 rounds of selection of double stranded 26-mers bound to bacterially expressed protein; values were derived from graphically displayed nucleotide frequencies [1] XX RN [1]; RE0023431. RX PUBMED: 12743119. RA Tang W., Perry S. E. RT Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study. RL J. Biol. Chem. 278:28154-28159 (2003). XX // AC M00950 XX ID P$AG_02 XX DT 06.11.2003 (created); rhe_cga. DT 13.02.2004 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AG XX BF T01007; AG; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 1 2 0 11 T 02 1 0 0 13 T 03 5 0 4 5 D 04 0 14 0 0 C 05 0 11 0 3 C 06 6 2 2 4 N 07 6 0 2 6 W 08 10 0 0 4 A 09 4 0 0 10 T 10 6 2 0 6 W 11 5 1 2 6 W 12 3 0 11 0 G 13 0 0 14 0 G 14 5 4 0 5 H 15 12 0 0 1 A 16 11 0 2 1 A XX BA 14 selected sequences XX CC 3 to 5 rounds of selection of double stranded 26-mers bound to bacterially expressed protein; values were derived from graphically displayed nucleotide frequencies [1] XX RN [1]; RE0023431. RX PUBMED: 12743119. RA Tang W., Perry S. E. RT Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study. RL J. Biol. Chem. 278:28154-28159 (2003). XX // AC M00951 XX ID I$GRH_01 XX DT 07.11.2003 (created); oke. DT 07.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA Grainyhead/Elf-1/NTF-1 XX BF T05734; Ce-GRH-1; Species: Caenorhabditis elegans. BF T01019; Elf-1; Species: fruit fly, Drosophila melanogaster. XX P0 A C G T 01 5 0 0 2 A 02 0 7 0 0 C 03 1 2 0 4 Y 04 0 0 6 1 G 05 0 0 7 0 G 06 0 0 0 7 T 07 0 0 0 7 T 08 0 1 1 5 T XX BA genomic binding sites upstream of C.elegans and Drosophila genes XX RN [1]; RE0023445. RX PUBMED: 12888489. RA Venkatesan K., McManus H. R., Mello C. C., Smith T. F., Hansen U. RT Functional conservation between members of an ancient duplicated transcription factor family, LSF/Grainyhead. RL Nucleic Acids Res. 31:4304-4316 (2003). XX // AC M00952 XX ID P$PCF5_01 XX DT 11.11.2003 (created); rhe_cga. DT 11.11.2003 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA PCF5 XX BF T05738; PCF5; Species: rice, Oryza sativa. XX P0 A C G T 01 6 3 63 3 G 02 4 20 5 52 T 03 0 0 82 1 G 04 1 0 82 0 G 05 5 22 13 43 Y 06 0 83 0 0 C 07 0 83 0 0 C 08 4 74 3 2 C 09 17 24 25 15 N 10 15 28 12 26 N XX BA 83 selected sequences XX CC 5 rounds of selection with in-vitro-translated protein XX RN [1]; RE0023449. RX PUBMED: 12000681. RA Kosugi S., Ohashi Y. RT DNA binding and dimerization specificity and potential targets for the TCP protein family. RL Plant J. 30:337-348 (2002). XX // AC M00953 XX ID V$AR_02 XX DT 12.11.2003 (created); ech. DT 12.11.2003 (updated); ech. CO Copyright (C), Biobase GmbH. XX NA AR XX DE high affinity binding sites for androgen receptor XX BF T00042; AR; Species: rat, Rattus norvegicus. XX P0 A C G T 01 11 14 14 12 N 02 9 7 20 15 N 03 9 9 17 16 N 04 9 4 26 12 G 05 17 13 12 9 N 06 17 3 23 8 R 07 15 1 29 6 R 08 1 1 45 4 G 09 11 5 11 24 N 10 45 2 0 4 A 11 1 50 0 0 C 12 34 0 16 1 A 13 8 14 11 18 N 14 12 11 12 16 N 15 2 4 33 12 G 16 0 0 0 51 T 17 0 0 51 0 G 18 0 0 0 51 T 19 0 0 0 51 T 20 0 51 0 0 C 21 0 0 0 51 T 22 7 8 13 23 N 23 8 5 22 16 N 24 12 9 13 17 N 25 10 9 16 16 N 26 9 15 13 14 N 27 13 12 14 12 N XX BA 51 binding sites selected from random oligonucleotides XX CC included sites contain TGTTCT sequence from position 16 to 21 XX RN [1]; RE0023480. RX PUBMED: 10598584. RA Nelson C. C., Hendy S. C., Shukin R. J., Cheng H., Bruchovsky N., Koop B. F., Rennie P. S. RT Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: evidence for differential steroid receptor response elements. RL Mol. Endocrinol. 13:2090-2107 (1999). XX // AC M00954 XX ID V$PR_01 XX DT 12.11.2003 (created); ech. DT 12.11.2003 (updated); ech. CO Copyright (C), Biobase GmbH. XX NA PR XX DE high affinity binding sites for progesterone receptor XX BF T05742; PR; Species: human, Homo sapiens. XX P0 A C G T 01 9 8 19 16 N 02 9 10 22 11 N 03 10 10 16 16 N 04 12 4 23 13 N 05 11 5 17 19 N 06 11 8 18 15 N 07 13 3 29 7 G 08 4 6 38 4 G 09 11 2 23 16 N 10 33 2 7 10 A 11 6 32 11 3 C 12 27 7 14 4 R 13 8 8 14 22 N 14 10 7 19 16 N 15 13 6 18 15 N 16 0 0 0 52 T 17 0 0 52 0 G 18 0 0 0 52 T 19 0 0 0 52 T 20 0 52 0 0 C 21 0 0 0 52 T 22 10 13 8 21 N 23 12 15 15 10 N 24 9 8 21 14 N 25 8 6 17 21 N 26 14 10 19 9 N 27 9 7 20 16 N XX BA 52 binding sites selected from random oligonucleotides XX CC included sites contain TGTTCT sequence from position 16 to 21 XX RN [1]; RE0023480. RX PUBMED: 10598584. RA Nelson C. C., Hendy S. C., Shukin R. J., Cheng H., Bruchovsky N., Koop B. F., Rennie P. S. RT Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: evidence for differential steroid receptor response elements. RL Mol. Endocrinol. 13:2090-2107 (1999). XX // AC M00955 XX ID V$GR_01 XX DT 12.11.2003 (created); ech. DT 19.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA GR XX DE high affinity binding site for glucocorticoid receptor XX BF T05076; GR; Species: human, Homo sapiens. XX P0 A C G T 01 11 9 17 16 N 02 15 9 12 17 N 03 9 10 16 18 N 04 9 12 16 16 N 05 12 13 13 13 N 06 13 6 18 16 N 07 12 7 23 11 N 08 7 4 37 5 G 09 10 2 19 22 K 10 29 8 10 6 A 11 3 34 11 5 C 12 26 6 10 11 N 13 8 13 16 16 N 14 19 6 13 15 N 15 16 8 20 9 N 16 0 0 0 53 T 17 0 0 53 0 G 18 0 0 0 53 T 19 0 0 0 53 T 20 0 53 0 0 C 21 0 0 0 53 T 22 17 9 14 13 N 23 14 4 22 13 N 24 11 10 17 15 N 25 4 12 26 11 N 26 15 8 15 15 N 27 23 6 15 9 N XX BA 53 binding sites selected from random oligonucleotides XX CC all sites contain TGTTCT sequence from position 16 to 21 XX RN [1]; RE0023480. RX PUBMED: 10598584. RA Nelson C. C., Hendy S. C., Shukin R. J., Cheng H., Bruchovsky N., Koop B. F., Rennie P. S. RT Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: evidence for differential steroid receptor response elements. RL Mol. Endocrinol. 13:2090-2107 (1999). XX // AC M00956 XX ID V$AR_03 XX DT 12.11.2003 (created); ech. DT 12.11.2003 (updated); ech. CO Copyright (C), Biobase GmbH. XX NA AR XX DE is recognized by androgen reseptor XX BF T00042; AR; Species: rat, Rattus norvegicus. XX P0 A C G T 01 17 8 16 11 N 02 7 13 22 10 N 03 11 11 16 14 N 04 13 9 15 15 N 05 16 5 19 12 N 06 19 5 15 13 N 07 17 1 28 6 R 08 2 0 48 2 G 09 17 3 10 22 N 10 42 0 7 3 A 11 0 46 3 3 C 12 22 3 21 6 R 13 6 24 8 14 N 14 15 9 17 11 N 15 6 11 30 5 G 16 0 0 0 52 T 17 0 0 52 0 G 18 0 0 0 52 T 19 0 0 0 52 T 20 0 52 0 0 C 21 0 0 0 52 T 22 9 11 11 21 N 23 12 4 16 20 N 24 11 11 14 16 N 25 8 5 20 19 N 26 8 11 19 14 N 27 13 12 15 12 N XX BA 52 binding sites selected from random oligonucleotides XX CC included sites contain TGTTCT sequence from position 16 to 21; this sites are preferentially recognized by AR, but not GR XX RN [1]; RE0023480. RX PUBMED: 10598584. RA Nelson C. C., Hendy S. C., Shukin R. J., Cheng H., Bruchovsky N., Koop B. F., Rennie P. S. RT Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: evidence for differential steroid receptor response elements. RL Mol. Endocrinol. 13:2090-2107 (1999). XX // AC M00957 XX ID V$PR_02 XX DT 12.11.2003 (created); ech. DT 12.11.2003 (updated); ech. CO Copyright (C), Biobase GmbH. XX NA PR XX DE is recognized by progesterone receptor XX BF T05742; PR; Species: human, Homo sapiens. XX P0 A C G T 01 11 9 24 10 N 02 10 5 23 16 N 03 10 9 23 12 N 04 11 11 18 14 N 05 13 13 17 11 N 06 15 5 20 14 N 07 21 2 25 6 R 08 5 2 37 10 G 09 14 9 16 15 N 10 42 3 5 4 A 11 3 42 3 6 C 12 20 4 17 13 N 13 15 8 12 19 N 14 9 3 25 17 K 15 12 9 17 16 N 16 0 0 0 54 T 17 0 0 54 0 G 18 0 0 0 54 T 19 0 0 0 54 T 20 0 54 0 0 C 21 0 0 0 54 T 22 16 5 14 19 N 23 10 4 25 15 N 24 10 6 23 15 N 25 8 8 20 18 N 26 12 10 20 12 N 27 15 12 16 11 N XX BA 54 binding sites selected from random oligonucleotides XX CC included sites contain TGTTCT sequence from position 16 to 21; this sites are preferentially recognized by PR, but not GR XX RN [1]; RE0023480. RX PUBMED: 10598584. RA Nelson C. C., Hendy S. C., Shukin R. J., Cheng H., Bruchovsky N., Koop B. F., Rennie P. S. RT Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: evidence for differential steroid receptor response elements. RL Mol. Endocrinol. 13:2090-2107 (1999). XX // AC M00958 XX ID P$ABI4_01 XX DT 13.11.2003 (created); abd. DT 23.11.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ABI4 XX BF T05743; ABI4; Species: maize, Zea mays. XX P0 A C G T 01 11 8 10 2 N 02 13 5 12 4 N 03 3 4 32 1 G 04 1 43 0 1 C 05 40 0 12 0 A 06 0 52 0 0 C 07 0 52 0 0 C 08 1 0 20 0 G 09 0 21 0 0 C 10 1 20 0 0 C 11 1 14 4 1 C XX BA 52 selected sequences XX BS CACCGCCC; R14329; 1; 11; 1, 2, 3; p. BS CACCGCCC; R14330; 1; 11; 1, 2, 3; p. BS ACCGCCC; R14331; 1; 11; 1, 2, 3, 4; p. BS ACACCGCCC; R14332; 1; 11; 1, 2; p. BS ACACCGCCC; R14333; 1; 11; 1, 2; p. BS CACCGCCC; R14334; 1; 11; 1, 2, 3; p. BS ACCGCCG; R14335; 1; 11; 1, 2, 3, 4; p. BS ACCGCCG; R14336; 1; 11; 1, 2, 3, 4; p. BS CACCGCCG; R14337; 1; 11; 1, 2, 3; p. BS ACCGCCG; R14338; 1; 11; 1, 2, 3, 4; p. BS ACCGCCA; R14339; 1; 11; 1, 2, 3, 4; p. BS ACCGCCC; R14340; 1; 11; 1, 2, 3, 4; p. BS ACGCCGCCC; R14341; 1; 11; 1, 2; p. BS AGCGCCGCCC; R14342; 1; 11; 1; p. BS GCCGCCC; R14343; 1; 11; 1, 2, 3, 4; p. BS CGCCGCCC; R14344; 1; 11; 1, 2, 3; p. BS CCGCCGCCC; R14345; 1; 11; 1, 2; p. BS TCGCCGCCC; R14346; 1; 11; 1, 2; p. BS GGCGCCGCAT; R14347; 1; 11; 1; p. BS GGCGCCACC; R14348; 1; 11; 1, 11; p. BS GTGCCGCCC; R14349; 1; 11; 1, 2; p. BS ACGCACC; R14350; 1; 11; 1, 2, 3, 4; n. BS GAGCACC; R14351; 1; 11; 1, 2, 3, 4; n. BS GCGCACC; R14352; 1; 11; 1, 2, 3, 4; n. BS CCGCACC; R14353; 1; 11; 1, 2, 3, 4; n. BS GTGCACC; R14354; 1; 11; 1,2,3, 4; n. BS GTGCACC; R14355; 1; 11; 1, 2, 3, 4; n. BS CTGCACC; R14356; 1; 11; 1, 2, 3, 4; n. BS GGGCACC; R14357; 1; 11; 1, 2, 3, 4; n. BS AGGCACC; R14358; 1; 11; 1, 2, 3, 4; n. BS AGGCACC; R14359; 1; 11; 1, 2, 3, 4; n. BS AGGCACC; R14360; 1; 11; 1, 2, 3, 4; n. BS TGGCACC; R14361; 1; 11; 1, 2, 3, 4; n. BS GAGCACC; R14362; 1; 11; 1, 2, 3, 4; n. BS GAGCACC; R14363; 1; 11; 1, 2, 3, 4; n. BS GAGCACC; R14364; 1; 11; 1, 2, 3, 4; n. BS GAGCACC; R14365; 1; 11; 1, 2, 3, 4; n. BS GAGCACC; R14366; 1; 11; 1, 2, 3, 4; n. BS CAGCACC; R14367; 1; 11; 1, 2, 3, 4; n. BS CAGCACC; R14368; 1; 11; 1, 2, 3, 4; n. BS AAGCACC; R14369; 1; 11; 1, 2, 3, 4; n. BS AAGCACC; R14370; 1; 11; 1, 2, 3, 4; n. BS AAGCACC; R14371; 1; 11; 1, 2, 3, 4; n. BS AAGAACC; R14372; 1; 11; 1, 2, 3, 4; n. BS CGGCACC; R14373; 1; 11; 1, 2, 3, 4; n. BS ATGCACC; R14374; 1; 11; 1, 2, 3, 4; n. BS CGCCACC; R14375; 1; 11; 1, 2, 3, 4; n. BS AGCCACC; R14376; 1; 11; 1, 2, 3, 4; n. BS CCCCACC; R14377; 1; 11; 1, 2, 3, 4; n. BS AGGCGCC; R14378; 1; 11; 1, 2, 3, 4; n. BS TGGCGCC; R14379; 1; 11; 1, 2, 3, 4; n. BS CCGCGCC; R14380; 1; 11; 1, 2, 3, 4; n. XX CC selected from a pool of 52-mers with 10 random core nucleotides (6 rounds) [1] XX RN [1]; RE0023455. RX PUBMED: 12368505. RA Niu X., Helentjaris T., Bate N. J. RT Maize ABI4 binds coupling element1 in abscisic acid and sugar response genes. RL Plant Cell 14:2565-2575 (2002). XX // AC M00959 XX ID V$ER_Q6_02 XX DT 18.11.2003 (created); dtc. DT 20.11.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA ER XX DE half-site matrix, half-ERE XX BF T00261; ER-alpha; Species: human, Homo sapiens. BF T00258; ER-alpha; Species: rat, Rattus norvegicus. BF T00259; ER-alpha; Species: mouse, Mus musculus. BF T00262; ER-alpha; Species: cattle, Bos taurus. BF T00263; ER-alpha; Species: clawed frog, Xenopus laevis. BF T00264; ER-alpha; Species: chick, Gallus gallus. BF T05703; ER-alpha; Species: rabbit, Oryctolagus cuniculus. BF T05702; ER-alpha:ER-beta; Species: human, Homo sapiens. BF T02764; ER-beta; Species: rat, Rattus norvegicus. BF T04651; ER-beta; Species: human, Homo sapiens. BF T04649; ER-beta1; Species: mouse, Mus musculus. XX P0 A C G T 01 9 16 8 6 N 02 29 3 7 0 A 03 1 0 36 2 G 04 0 0 39 0 G 05 1 0 3 35 T 06 1 35 3 0 C 07 37 1 0 1 A 08 6 17 8 8 N 09 7 11 16 5 N 10 7 11 17 4 N 11 4 11 3 21 Y XX BA 39 compiled sequences including 3 TRANSCompel sites XX BS GAGGTCTTTTG; R00144; 5; 11;; n. BS TGGGTCACTGA; R00153; 6; 11;; n. BS CAGGTCAGACT; R00154; -1; 11;; p. BS AAGGTCAAACT; R01194; -2; 11;; p. BS CCGGTCACGCT; R01571; 5; 11;; n. BS CCGGTCACGCT; R01573; -1; 11;; n. BS CAGGTCAACAT; R01577; -2; 11;; p. BS TGGGTCACGGC; R01579; 5; 11;; n. BS CAGGTCACAGT; R01586; -2; 11;; p. BS GAGGTCATGAT; R01592; 28; 11;; n. BS GAGGTCATGAT; R02665; 25; 11;; n. BS CAGGTCAGGGT; R02926; -1; 11;; p. BS TGGGTCATCTT; R03269; 5; 11;; n. BS CAGGTCATGTC; R03272; -2; 11;; p. BS CAGGTCACCAT; R03366; 6; 11;; p. BS CATGTGAGGGT; R03480; 5; 11;; n. BS AAGGTCAGCTA; R03566; 13; 11;; n. BS CAGGTCAAGCT; R03567; 24; 11;; n. BS CAGGTCACAGA; R03568; 13; 11;; n. BS CAGGTCAAAGC; R03569; 6; 11;; n. BS AAAGTGACTGA; R10107; 10; 11;; p. BS GAGGGCAGGGT; R10108; 10; 11;; n. BS CGGGGCAACCT; R13302; 4; 11;; p. BS AAGGTCACGGT; R14194; 18; 11;; p. BS AAGGTCATGCT; R14197; 10; 11;; n. BS TAGGGCACCAC; R14203; 37; 11;; p. BS GAGGTCACGAG; R14207; 8; 11;; n. BS GCGGTCACTGC; R14209; 5; 11;; n. BS AAGGTCAGAAC; R14214; 11; 11;; p. BS CGGGTCATTGC; R14217; 19; 11;; p. BS AGGGTCAGGGC; R14226; 10; 11;; n. BS AAGGTGACCCC; R14231; 15; 11;; p. BS GAGGTCACCCT; R14232; 14; 11;; n. BS CATGTCCCCCT; R14235; 5; 11;; n. BS AAGGTCACCGC; R14237; 3; 11;; n. BS GGGGTCAGCCC; R14291; 10; 11;; n. BS CAGGTCAAGGT; C00019, s00025; -2; 11;; p. BS TAGGACATAGT; C00363, s00631; 5; 11;; n. BS TAGGTAACGGG; C00403, s00707; -1; 11;; p. XX CC half-site of ERE (estrogen response element) XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00960 XX ID V$PR_Q2 XX DT 18.11.2003 (created); dtc. DT 19.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA PR, GR XX DE half-site matrix XX BF T00335; GR; Species: mouse, Mus musculus. BF T00333; GR; Species: rat, Rattus norvegicus. BF T00334; GR; Species: chick, Gallus gallus. BF T00336; GR; Species: cat, Felis silvestris catus. BF T04685; GR; Species: clawed frog, Xenopus laevis. BF T05075; GR; Species: sheep, Ovis aries. BF T05076; GR; Species: human, Homo sapiens. BF T00337; GR-alpha; Species: human, Homo sapiens. BF T01920; GR-beta; Species: human, Homo sapiens. BF T04680; PR; Species: mouse, Mus musculus. BF T04681; PR; Species: rat, Rattus norvegicus. BF T01661; PR A; Species: human, Homo sapiens. BF T00696; PR B; Species: human, Homo sapiens. BF T00697; PR B; Species: rabbit, Oryctolagus cuniculus. BF T01660; PR-alpha; Species: chick, Gallus gallus. BF T00698; PR-beta; Species: chick, Gallus gallus. XX P0 A C G T 01 4 2 10 4 N 02 11 2 1 6 W 03 7 2 6 5 N 04 12 0 4 4 A 05 0 0 20 0 G 06 11 0 7 2 R 07 20 0 0 0 A 08 0 19 1 0 C 09 19 0 0 1 A 10 3 5 6 6 N XX BA 20 compiled sequences XX BS CAGAGAACAC; R00973; -3; 10;; p. BS TTATGTACAG; R00974; -3; 10;; p. BS GTTTGTACAG; R00976; -3; 10;; p. BS TTAAGAACAG; R01112; 6; 10;; n. BS TTAAGAACAG; R01120; -1; 10;; n. BS GCTAGAACAT; R01481; 10; 10;; n. BS GAGGGGAGAA; R01546; 3; 10;; n. BS AAAAGGACTC; R01548; -1; 10;; n. BS GAGTGAACAG; R01551; -1; 10;; n. BS AAGAGGACAT; R01555; -1; 10;; n. BS GAAAGAACAC; R01575; 4; 10;; p. BS CAAAGGACAG; R02993; 9; 10;; n. BS GAAAGGACAT; R02994; 9; 10;; n. BS AGTAGAACAT; R02995; 9; 10;; n. BS GAGAGGACAT; R02996; -3; 10;; p. BS GTGGGAACAT; R03270; -3; 10;; p. BS GCTGGAACAA; R03271; -3; 10;; p. BS AACGGGACAA; R12328; -3; 10;; p. BS TTTTGAACAC; R12329; -3; 10;; p. BS GACAGAACAC; R14316; -3; 10;; p. XX CC half-site PRE (progesterone response element); for the construction of the matrix, PR binding sites as well as binding sites to which both PR and GR bind have been taken. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00961 XX ID V$VDR_Q6 XX DT 18.11.2003 (created); dtc. DT 20.11.2003 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA VDR XX DE half-site matrix XX BF T00885; VDR; Species: human, Homo sapiens. BF T00882; VDR; Species: rat, Rattus norvegicus. BF T00883; VDR; Species: mouse, Mus musculus. BF T00884; VDR; Species: chick, Gallus gallus. BF T01369; VDR; Species: domestic pig, Sus scrofa. XX P0 A C G T 01 5 11 4 1 C 02 3 8 4 6 N 03 1 8 8 4 S 04 4 4 7 6 N 05 4 5 7 5 N 06 1 1 2 17 T 07 2 2 16 1 G 08 19 1 1 0 A 09 15 5 1 0 A 10 1 17 2 1 C 11 1 16 2 2 C 12 6 7 2 6 N XX BA 21 compiled sequences including 3 TRANSCompel sites XX BS CCGGGTGAACGG; R01187; 10; 12;; p. BS CTCATTCACCCA; R01188; 2; 12;; n. BS AGACGTGAACCT; R10003; 10; 12;; n. BS CCCGGTGAACTC; R10005; 7; 12;; p. BS CTCGCTGACTCC; R10007; 17; 12;; p. BS GTGTCGGAAGCC; R10016; 4; 12;; p. BS GAGTCTGAGCAA; R10017; 22; 12;; p. BS CCTCCTGACCCT; R10018; 2; 12;; n. BS TGCTTTGAACCT; R10019; 9; 12;; p. BS CCTCACTCACCT; R10020; 8; 12;; p. BS CCCGCTGAACCC; R10021; 9; 12;; p. BS ACCAGTGGACTT; R10023; -5; 12;; p. BS CCGGGTGAACGG; R10026; 21; 12;; p. BS GACATTGAACCA; R10031; 18; 12;; n. BS AAGGGAGACCCA; R10041; 8; 12;; p. BS GGCTTTCAACCC; R10053; 26; 12;; n. BS CTGCATGAACCC; R10067; 15; 12;; n. BS ACTGTTGACCCC; R12727; 2; 12;; n. BS CTGTATGAAACA; C00166, s00267; 12; 12;; n. BS AGGAGGAAAGCA; C00353, s00613; -1; 12;; n. BS CTTTATAAACCT; C00364, s00633; 15; 12;; n. XX CC half-site of VDRE (vitamine D3 response element); VDR can bind as a homodimer or a heterodimer with RXR. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00962 XX ID V$AR_Q6 XX DT 18.11.2003 (created); dtc. DT 18.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA AR XX DE half-site matrix XX BF T00040; AR; Species: human, Homo sapiens. BF T00041; AR; Species: mouse, Mus musculus. BF T00042; AR; Species: rat, Rattus norvegicus. BF T04652; AR; Species: baboon, Papio hamadryas. BF T04653; AR; Species: chimpanzee, Pan troglodytes. BF T04654; AR; Species: macaque, Macaca fascicularis. BF T04655; AR; Species: lemur, Eulemur fulvus collaris. XX P0 A C G T 01 11 2 4 13 W 02 1 5 23 1 G 03 26 0 1 3 A 04 8 1 20 1 G 05 4 22 1 3 C 06 29 1 0 0 A 07 8 12 5 5 N 08 11 0 13 6 R 09 9 6 6 9 N XX BA 30 compiled sequences XX BS TGAGAACAT; R03286; 9; 9;; n. BS AGAACAAAA; R10144; 7; 9;; n. BS TGAGTAGAT; R10148; -2; 9;; p. BS TGAACAAGA; R10149; 7; 9;; n. BS AGAGCAGGA; R10150; 1; 9;; p. BS AGAACAATG; R10151; 7; 9;; n. BS AGAGCATGA; R10152; 1; 9;; p. BS TGAGAAGAA; R14260; 3; 9;; p. BS ACAGCAAGT; R14261; 8; 9;; p. BS TGAGCAAAG; R14262; 5; 9;; n. BS TGTGCACAC; R14263; 18; 9;; p. BS TAAGCAAGC; R14264; 23; 9;; p. BS AGATCATGA; R14266; 32; 9;; n. BS TTTGCAAGT; R14267; 23; 9;; n. BS TGACCACAG; R14276; 21; 9;; n. BS AGGACATTC; R14281; 8; 9;; n. BS GGAGTACTG; R14282; 7; 9;; n. BS TGTACACGT; R14283; 16; 9;; p. BS CCAGCACAC; R14284; 15; 9;; n. BS GGAGTACTT; R14287; 12; 9;; p. BS AGAACAAGA; R14293; 10; 9;; n. BS AGAGCCTTT; R14294; 14; 9;; p. BS TGAGCACGA; R14299; 10; 9;; n. BS GGAACAGAA; R14300; 13; 9;; n. BS TGAGAACAG; R14301; 12; 9;; n. BS AGAACACTG; R14302; 9; 9;; n. BS CCAGCAGGC; R14306; 2; 9;; p. BS TGAGAACAT; R14308; 11; 9;; n. BS GCAGCACGC; R14312; 5; 9;; p. BS ACAGGATGT; R14314; 4; 9;; p. XX CC half-site of ARE (androgen response element) XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00963 XX ID V$T3R_Q6 XX DT 18.11.2003 (created); dtc. DT 18.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA T3R XX DE half-site matrix XX BF T05299; RAR-alpha; Species: human, Homo sapiens. BF T05273; RAR-alpha:RXR-alpha; Species: rat, Rattus norvegicus. BF T05300; RAR-alpha:RXR-alpha; Species: human, Homo sapiens. BF T05370; RAR-alpha:RXR-gamma; Species: human, Homo sapiens. BF T00719; RAR-alpha1; Species: human, Homo sapiens. BF T00721; RAR-beta; Species: human, Homo sapiens. BF T01326; RAR-beta2; Species: human, Homo sapiens. BF T00720; RAR-gamma; Species: human, Homo sapiens. BF T01329; RAR-gamma; Species: mouse, Mus musculus. BF T01345; RXR-alpha; Species: human, Homo sapiens. BF T01331; RXR-alpha; Species: mouse, Mus musculus. BF T01332; RXR-beta; Species: mouse, Mus musculus. BF T01334; RXR-beta; Species: human, Homo sapiens. BF T01349; RXR-beta; Species: rat, Rattus norvegicus. BF T01366; RXR-beta2; Species: mouse, Mus musculus. BF T01333; RXR-gamma; Species: mouse, Mus musculus. BF T04807; RXR-gamma; Species: human, Homo sapiens. BF T00838; T3R-alpha; Species: human, Homo sapiens. BF T00839; T3R-alpha; Species: rat, Rattus norvegicus. BF T00841; T3R-alpha; Species: rat, Rattus norvegicus. BF T01152; T3R-alpha1; Species: human, Homo sapiens. BF T01342; T3R-alpha1; Species: rat, Rattus norvegicus. BF T01153; T3R-alpha2; Species: human, Homo sapiens. BF T01173; T3R-alpha2; Species: mouse, Mus musculus. BF T00852; T3R-beta; Species: rat, Rattus norvegicus. BF T00851; T3R-beta1; Species: human, Homo sapiens. BF T00853; T3R-beta1; Species: rat, Rattus norvegicus. BF T01350; T3R-beta2; Species: rat, Rattus norvegicus. XX P0 A C G T 01 12 16 1 7 M 02 6 14 10 6 N 03 3 5 4 24 T 04 2 7 26 1 G 05 13 3 1 19 W 06 2 33 1 0 C 07 0 36 0 0 C 08 0 4 1 31 T 09 1 10 10 15 N XX BA 36 compiled sequences XX BS CACGTCCCT; R00619; 11; 9;; n. BS AGGCTCCTG; R00621; -2; 9;; n. BS AGTGACCTC; R00624; 18; 9;; n. BS CCTGACCTC; R01063; 1; 9;; n. BS AGTGAACTT; R01321; 13; 9;; n. BS ACTGTCCTC; R01617; 19; 9;; n. BS CTTGACCTC; R01673; 13; 9;; n. BS CATGACCTT; R01690; 4; 9;; p. BS CAGGTCCTT; R02595; 2; 9;; n. BS CTCCTCCTC; R02714; 8; 9;; n. BS AGTGACCTG; R02856; 9; 9;; n. BS TCTCTCCCT; R03192; 13; 9;; n. BS CGTGTCCTC; R03886; 11; 9;; n. BS CACCTCCTC; R03929; 8; 9;; n. BS TTTGACCTA; R03932; -1; 9;; n. BS ATGAACCTT; R03934; -1; 9;; p. BS TGTGACCTC; R03935; 3; 9;; p. BS CCTGACCTG; R03936; 13; 9;; n. BS TCTCTCCCT; R03956; 16; 9;; n. BS CATGCCCTT; R03959; 12; 9;; n. BS CGAGTCCCC; R03960; -3; 9;; p. BS TCTGACCTT; R03962; 14; 9;; n. BS CCTGTCCTT; R04018; 1; 9;; p. BS TTTCTCCTG; R04401; 22; 9;; n. BS AGTCTCCTT; R04402; 15; 9;; n. BS CAAATCCTT; R04758; 11; 9;; p. BS CCTGTGCTG; R04760; 6; 9;; p. BS AGGGTCCGG; R04761; 21; 9;; n. BS ACAGACCTG; R04769; -2; 9;; p. BS ACCTTACTT; R04771; 12; 9;; n. BS ACTGACCTC; R08504; 3; 9;; n. BS CCCGGCCTT; R13071; 16; 9;; n. BS CTTGCCCTG; R13185; 7; 9;; p. BS AGTGTCCTG; R13186; 9; 9;; p. BS TCTGCCCTT; R13187; 20; 9;; p. BS GCTGTCCTG; R13317; 16; 9;; p. XX CC half-site of TRE (thyroid hormone response element) and RARE (retinoic acid response element). XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00964 XX ID V$PXR_Q2 XX DT 18.11.2003 (created); dtc. DT 18.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA PXR, CAR, LXR, FXR XX DE half-site matrix XX BF T02261; CAR; Species: human, Homo sapiens. BF T05257; CAR:RXR-alpha; Species: mouse, Mus musculus. BF T05315; CAR:RXR-alpha; Species: rat, Rattus norvegicus. BF T04494; FXR; Species: rat, Rattus norvegicus. BF T05309; FXR; Species: human, Homo sapiens. BF T05313; FXR:RXR-alpha; Species: human, Homo sapiens. BF T05318; FXR:RXR-alpha; Species: rat, Rattus norvegicus. BF T05322; FXR:RXR-alpha; Species: mouse, Mus musculus. BF T05320; LXR-alpha:RXR-alpha; Species: mouse, Mus musculus. BF T05324; LXR-alpha:RXR-alpha; Species: human, Homo sapiens. BF T05357; LXR-alpha:RXR-alpha; Species: rat, Rattus norvegicus. BF T05325; LXR-beta:RXR-alpha; Species: human, Homo sapiens. BF T04617; PXR-1; Species: human, Homo sapiens. BF T04618; PXR-1; Species: mouse, Mus musculus. BF T04619; PXR-2; Species: mouse, Mus musculus. BF T05314; PXR:RXR-alpha; Species: rat, Rattus norvegicus. XX P0 A C G T 01 14 0 11 8 R 02 12 0 20 1 R 03 7 0 26 0 G 04 1 0 31 1 G 05 0 1 1 31 T 06 0 15 1 17 Y 07 28 4 0 1 A 08 12 5 10 6 N 09 5 3 8 17 T 10 15 6 12 0 R 11 16 2 8 7 N 12 14 14 3 2 M XX BA 33 compiled sequences XX BS AGGGTCAGGCCA; R09936; -1; 12;; p. BS AGGGTTTAAATA; R09957; 13; 12;; p. BS TGAGTGACCAAA; R09968; 2; 12;; n. BS GGGGTTACTAGC; R09972; 23; 12;; n. BS GGGGTTACTGGC; R09974; 10; 12;; n. BS GGGGTCATTGTC; R09975; 4; 12;; p. BS AGGGTCACTGGC; R09980; 4; 12;; p. BS GAGGTTATTCAC; R09992; 6; 12;; n. BS TGGGTTAATGAC; R10074; 3; 12;; p. BS AAGGTTATTCAC; R10075; 6; 12;; n. BS TGGGTTAATAAC; R10076; 3; 12;; p. BS TGAGTTAATGAC; R10077; 3; 12;; p. BS GAAGTTCATCTA; R10080; 2; 12;; n. BS AAAGTTCATCTA; R10081; 12; 12;; p. BS GAGGTCAGTGAG; R10090; 12; 12;; p. BS AGGGTCAGCAAG; R10853; 10; 12;; n. BS TGAGTTAACATT; R12029; -3; 12;; n. BS AGGGTCAGTGAC; R12767; 11; 12;; p. BS TAGGTCAAAGGA; R13013; 5; 12;; n. BS AGAGTTCAAGGA; R13075; 6; 12;; n. BS TTGGTTAAGAGT; R13076; 7; 12;; n. BS GGGGTCATGAAC; R13127; 4; 12;; p. BS GAGGTCAGAGAC; R13128; 7; 12;; p. BS AGGATCAATGTC; R13129; 10; 12;; n. BS GGGGTTACTACC; R13134; 10; 12;; n. BS AGGGCTATGGAA; R13135; 6; 12;; p. BS TGGTTCAGGAAA; R14174; 3; 12;; p. BS AGGGTCAGGAAA; R14175; 5; 12;; p. BS AAGGTCAGGAAA; R14178; 8; 12;; n. BS GAAGTTCATCTA; R14179; 10; 12;; p. BS GAGGTCAGAAGA; R14182; 10; 12;; n. BS AAGGGTATTAGG; R14201; 14; 12;; p. BS AAGGTCAGGAAA; R14220; 8; 12;; n. XX CC half-site of PXRE, LXRE, FXRE; half-site for the orphan nuclear receptors involved in the drug metabolism and detoxification. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00965 XX ID V$DR4_Q2 XX DT 19.11.2003 (created); dtc. DT 25.06.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA LXR, PXR, CAR, COUP, RAR XX DE direct repeat 4 XX BF T02261; CAR; Species: human, Homo sapiens. BF T05257; CAR:RXR-alpha; Species: mouse, Mus musculus. BF T05315; CAR:RXR-alpha; Species: rat, Rattus norvegicus. BF T05676; CAR:RXR-alpha; Species: human, Homo sapiens. BF T00147; COUP; Species: rat, Rattus norvegicus. BF T00149; COUP-TF1; Species: human, Homo sapiens. BF T00994; COUP-TF1; Species: mouse, Mus musculus. BF T00045; COUP-TF2; Species: human, Homo sapiens. BF T02752; LXR-alpha; Species: human, Homo sapiens. BF T04430; LXR-alpha; Species: mouse, Mus musculus. BF T04434; LXR-alpha; Species: rat, Rattus norvegicus. BF T05320; LXR-alpha:RXR-alpha; Species: mouse, Mus musculus. BF T05324; LXR-alpha:RXR-alpha; Species: human, Homo sapiens. BF T05357; LXR-alpha:RXR-alpha; Species: rat, Rattus norvegicus. BF T04453; LXR-beta; Species: human, Homo sapiens. BF T04467; LXR-beta; Species: mouse, Mus musculus. BF T05325; LXR-beta:RXR-alpha; Species: human, Homo sapiens. BF T04617; PXR-1; Species: human, Homo sapiens. BF T04618; PXR-1; Species: mouse, Mus musculus. BF T05671; PXR-1:RXR-alpha; Species: human, Homo sapiens. BF T05673; PXR-1:RXR-alpha; Species: mouse, Mus musculus. BF T05672; PXR-1:RXR-beta; Species: human, Homo sapiens. BF T04619; PXR-2; Species: mouse, Mus musculus. BF T05674; PXR-2:RXR-alpha; Species: mouse, Mus musculus. BF T05299; RAR-alpha; Species: human, Homo sapiens. BF T05273; RAR-alpha:RXR-alpha; Species: rat, Rattus norvegicus. BF T05300; RAR-alpha:RXR-alpha; Species: human, Homo sapiens. BF T05370; RAR-alpha:RXR-gamma; Species: human, Homo sapiens. BF T00719; RAR-alpha1; Species: human, Homo sapiens. BF T00721; RAR-beta; Species: human, Homo sapiens. BF T00720; RAR-gamma; Species: human, Homo sapiens. BF T01329; RAR-gamma; Species: mouse, Mus musculus. BF T01331; RXR-alpha; Species: mouse, Mus musculus. BF T01334; RXR-beta; Species: human, Homo sapiens. BF T01349; RXR-beta; Species: rat, Rattus norvegicus. BF T05670; SXR:RXR-alpha; Species: human, Homo sapiens. XX P0 A C G T 01 0 5 2 12 Y 02 3 0 15 1 G 03 11 3 2 3 A 04 6 12 0 1 M 05 1 17 0 1 C 06 0 1 6 12 T 07 2 7 5 5 N 08 2 6 3 8 N 09 11 4 1 3 A 10 1 8 7 3 S 11 1 1 1 16 T 12 7 0 11 1 R 13 15 2 1 1 A 14 3 14 2 0 C 15 1 16 1 1 C 16 1 11 1 6 Y 17 4 9 2 4 N XX BA 19 compiled sequences XX BS GGTCAGAGACCAGGAGA; R04401; 12; 17;; p. BS CAGCCTGTACTGACCTC; R08504; 3; 17;; n. BS TGACCTGGCCTGACCCT; R09936; -1; 17;; n. BS TGAACTTATTTAAACCC; R09957; 14; 17;; n. BS TGAACTTGAGTGACCAA; R09968; 3; 17;; n. BS CGCCCGCTAGTAACCCC; R09972; 18; 17;; p. BS TGACCGCCAGTAACCCC; R09974; 5; 17;; p. BS TGCCCGACAATGACCCC; R09975; 4; 17;; n. BS TGACCGCCAGTGACCCT; R09980; 4; 17;; n. BS TGACCCGAGGTAACCCC; R10034; 8; 17;; p. BS TGACCTCCTTTGAGTTA; R12029; 3; 17;; n. BS TGACCGGTAGTAACCCC; R13134; 5; 17;; p. BS CGACTTCCATAGCCCTG; R13135; 5; 17;; n. BS CTACCTCCAGGACAGCC; R13317; 15; 17;; n. BS TGGACTTTCCTGAACCA; R14174; 3; 17;; n. BS TGTACTTTCCTGACCCT; R14175; 5; 17;; n. BS TGTACTTTCCTGACCTT; R14178; 3; 17;; p. BS CAAACTCTTCTGACCTC; R14182; 5; 17;; p. BS GACTCTGTACTTTCCTG; R14220; -3; 17;; p. XX CC several factors from the family of thyroid hormone receptor-like factors could bind to DR4 type of sites. XX RN [1]; RE0024406. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 4:0003 (2004). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00966 XX ID V$DR3_Q4 XX DT 19.11.2003 (created); dtc. DT 19.11.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA VDR, CAR, PXR XX DE direct repeat 3 XX BF T02261; CAR; Species: human, Homo sapiens. BF T05257; CAR:RXR-alpha; Species: mouse, Mus musculus. BF T05315; CAR:RXR-alpha; Species: rat, Rattus norvegicus. BF T05676; CAR:RXR-alpha; Species: human, Homo sapiens. BF T04617; PXR-1; Species: human, Homo sapiens. BF T04618; PXR-1; Species: mouse, Mus musculus. BF T05671; PXR-1:RXR-alpha; Species: human, Homo sapiens. BF T05673; PXR-1:RXR-alpha; Species: mouse, Mus musculus. BF T05672; PXR-1:RXR-beta; Species: human, Homo sapiens. BF T04619; PXR-2; Species: mouse, Mus musculus. BF T05674; PXR-2:RXR-alpha; Species: mouse, Mus musculus. BF T01345; RXR-alpha; Species: human, Homo sapiens. BF T01332; RXR-beta; Species: mouse, Mus musculus. BF T05670; SXR:RXR-alpha; Species: human, Homo sapiens. BF T00885; VDR; Species: human, Homo sapiens. BF T00882; VDR; Species: rat, Rattus norvegicus. BF T00883; VDR; Species: mouse, Mus musculus. BF T00884; VDR; Species: chick, Gallus gallus. BF T01369; VDR; Species: domestic pig, Sus scrofa. XX P0 A C G T 01 5 2 7 0 R 02 7 2 5 0 R 03 2 3 0 9 T 04 1 3 10 0 G 05 6 3 3 2 N 06 8 6 0 0 M 07 0 14 0 0 C 08 0 4 2 8 Y 09 0 4 1 9 T 10 3 5 2 4 N 11 4 6 2 2 N 12 0 0 0 14 T 13 0 4 9 1 G 14 10 3 1 0 A 15 7 7 0 0 M 16 0 12 0 2 C 17 0 10 0 4 C 18 2 2 6 4 N 19 0 5 3 6 Y 20 1 4 3 6 N 21 1 0 4 9 T XX BA 14 compiled sequences XX BS AATGTCCTCATTCACCCAGTG; R01188; -2; 21;; n. BS CGTGAACCTCGTGAACCTTGT; R10003; -3; 21;; n. BS GAACGCCGGAGTTCACCGGGT; R10005; 6; 21;; n. BS CCCGGACGCCCTCGCTCACCT; R10007; -3; 21;; p. BS GCACACCCTCCTGACCCTCAT; R10018; -2; 21;; n. BS GGCGCCCTCACTCACCTCGCT; R10020; 3; 21;; p. BS AGCGCACCCGCTGAACCCTGG; R10021; 3; 21;; p. BS AGTGGACTTTTTCCCCCTCTT; R10023; -2; 21;; p. BS GGTCTCCCTTCTGCCTCGCTG; R10041; -4; 21;; n. BS GATGAACTTCATGAACTGTCT; R10080; 4; 21;; p. BS GATGAACTTTATGAACTGTTT; R10081; 1; 21;; n. BS AATGAACTTGCTGACCCTCTG; R10853; 4; 21;; p. BS GATGAACTTCATGAACTGTCT; R14179; -2; 21;; n. BS AATACCCTTTATGAACCGTTA; R14201; 2; 21;; n. XX CC several factors from the family of thyroid hormone receptor-like factors could bind to DR3 type of sites. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00967 XX ID V$HNF4_Q6 XX DT 20.11.2003 (created); dtc. DT 12.12.2003 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA HNF4, COUP XX DE half-site matrix XX BF T00147; COUP; Species: rat, Rattus norvegicus. BF T00149; COUP-TF1; Species: human, Homo sapiens. BF T00994; COUP-TF1; Species: mouse, Mus musculus. BF T00045; COUP-TF2; Species: human, Homo sapiens. BF T00012; HNF-4; Species: human, Homo sapiens. BF T02758; HNF-4; Species: human, Homo sapiens. BF T05017; HNF-4; Species: rat, Rattus norvegicus. BF T03828; HNF-4alpha; Species: human, Homo sapiens. BF T01181; HNF-4alpha; Species: mouse, Mus musculus. BF T05287; HNF-4alpha; Species: mouse, Mus musculus. BF T00013; HNF-4alpha; Species: rat, Rattus norvegicus. BF T01182; HNF-4alpha; Species: rat, Rattus norvegicus. BF T05288; HNF-4alpha; Species: rat, Rattus norvegicus. BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. BF T02421; HNF-4alpha1; Species: human, Homo sapiens. BF T02424; HNF-4alpha1; Species: mouse, Mus musculus. BF T00373; HNF-4alpha2; Species: human, Homo sapiens. BF T02422; HNF-4alpha2; Species: rat, Rattus norvegicus. BF T02423; HNF-4alpha2; Species: mouse, Mus musculus. BF T02428; HNF-4alpha3; Species: human, Homo sapiens. BF T02425; HNF-4alpha4; Species: human, Homo sapiens. BF T02427; HNF-4alpha7; Species: mouse, Mus musculus. BF T02430; HNF-4gamma; Species: human, Homo sapiens. XX P0 A C G T 01 18 4 7 6 A 02 22 2 8 3 A 03 17 3 15 0 R 04 2 2 31 0 G 05 1 1 8 25 T 06 1 26 1 7 C 07 6 27 2 0 C 08 34 1 0 0 A 09 11 8 9 7 N XX BA 35 compiled sequences including 10 TRANSCompel sites XX BS TAAGTCCAC; R00114; 16; 9;; n. BS AAAGTTCAT; R01183; 6; 9;; n. BS GAAGTTCAG; R01186; 12; 9;; n. BS GAGGTCAAA; R01457; 8; 9;; p. BS AAGGGTCAT; R03035; 4; 9;; p. BS AGAGGCCAC; R03318; 27; 9;; p. BS ACCATCCAA; R03405; 10; 9;; n. BS GAAGTCCAA; R03881; 5; 9;; p. BS TAGGGGCAT; R04478; 24; 9;; n. BS TGGGTCCAG; R08883; 1; 9;; p. BS AAAGTTCAC; R08885; 6; 9;; n. BS CACGGCCAA; R12074; 7; 9;; n. BS GACCTCCAC; R13031; 2; 9;; n. BS AGAGTCCAG; R13032; 3; 9;; n. BS CAGATCAAA; R13033; 10; 9;; n. BS AAAGTCCAA; R13037; 7; 9;; p. BS AAAGTCCAG; R13055; 8; 9;; p. BS AAAGACCAC; R13057; 7; 9;; n. BS TCAGTCCCA; R13059; 21; 9;; p. BS AAAGGCCAT; R13065; 11; 9;; p. BS TAAGTCCAT; R13070; 3; 9;; n. BS AGGGGCCAC; R13208; 4; 9;; n. BS AGGGTCGAG; R13209; 9; 9;; n. BS GTGCCCCAT; R13273; 16; 9;; p. BS GGGGTCAAG; R14239; 11; 9;; n. BS CTGGGCAAA; C00018, s00023; 6; 9;; n. BS AAGGTTCAT; C00065, s00099; 4; 9;; p. BS AAGGTCCAA; C00122, s00180; 10; 9;; n. BS GGGGTCAAG; C00123, s00182; 8; 9;; n. BS TAGGTCGAG; C00370, s00186; 9; 9;; n. BS AAAGTCCAC; C00283, s00487; -2; 9;; n. BS CTAGGCCAA; C00285, s00491; 16; 9;; n. BS AGGGTAAAG; C00288, s00499; 7; 9;; n. BS AAAGTTCAC; C00290, s00503; 13; 9;; p. BS AAAGTTCAA; C00369, s00642; 6; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00968 XX ID P$ATMYB77_01 XX DT 23.11.2003 (created); vma. DT 23.11.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AtMYB-77 XX BF T02590; Myb-77; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 33 30 20 17 N 02 57 17 17 9 A 03 27 9 37 27 N 04 6 30 20 44 N 05 9 6 82 3 G 06 68 3 23 6 A 07 0 100 0 0 C 08 50 0 50 0 R 09 0 0 100 0 G 10 0 0 0 100 T 11 0 0 0 100 T 12 68 3 26 3 A 13 3 55 30 12 S XX BA binding sites selected from random oligonucleotides XX CC sequences were selected (4 cycles) by recombinant protein (in vitro transcribed and translated) from two oligonucleotide mixtures with a partially random core, NNNNNNCNGNTNN and NNNNNNTNGNTNN, the nucleotide frequencies are given in percentage [1] XX RN [1]; RE0007109. RX PUBMED: 9628022. RA Romero I., Fuertes A., Benito M. J., Malpica J., Leyva A., Paz-Ares J. RT More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana RL Plant J. 14:273-284 (1998). XX // AC M00969 XX ID P$ATMYB15_01 XX DT 23.11.2003 (created); vma. DT 23.11.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AtMYB-15 XX BF T02534; Myb-15; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 4 73 9 14 C 02 27 18 51 4 R 03 64 18 18 0 A 04 4 64 18 14 C 05 0 0 100 0 G 06 0 0 100 0 G 07 0 0 0 100 T 08 87 4 0 9 A 09 0 0 100 0 G 10 0 0 100 0 G 11 0 0 0 100 T 12 18 0 78 4 G 13 4 0 87 9 G XX BA binding sites selected from random oligonucleotides XX CC sequences were selected (4 cycles) by recombinant protein (in vitro transcribed and translated) from two oligonucleotide mixtures with a partially random core, NNNNNNCNGNTNN and NNNNNNTNGNTNN, the nucleotide frequencies are given in percentage [1] XX RN [1]; RE0007109. RX PUBMED: 9628022. RA Romero I., Fuertes A., Benito M. J., Malpica J., Leyva A., Paz-Ares J. RT More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana RL Plant J. 14:273-284 (1998). XX // AC M00970 XX ID P$ATMYB84_01 XX DT 23.11.2003 (created); vma. DT 04.12.2003 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AtMYB-84 XX BF T02597; Myb-84; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 22 18 42 18 N 02 0 14 86 0 G 03 18 4 78 0 G 04 14 9 55 22 G 05 0 0 100 0 G 06 0 0 100 0 G 07 0 0 0 100 T 08 78 4 4 14 A 09 0 0 100 0 G 10 0 0 100 0 G 11 0 0 0 100 T 12 0 0 96 4 G 13 4 32 60 4 S XX BA binding sites selected from random oligonucleotides XX CC sequences were selected (4 cycles) by recombinant protein (in vitro transcribed and translated) from two oligonucleotide mixtures with a partially random core, NNNNNNCNGNTNN and NNNNNNTNGNTNN, the nucleotide frequencies are given in percentage [1] XX RN [1]; RE0007109. RX PUBMED: 9628022. RA Romero I., Fuertes A., Benito M. J., Malpica J., Leyva A., Paz-Ares J. RT More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana RL Plant J. 14:273-284 (1998). XX // AC M00971 XX ID V$ETS_Q6 XX DT 13.02.2004 (created); dtc. DT 05.08.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA Ets XX BF T00112; c-Ets-1; Species: human, Homo sapiens. BF T00111; c-Ets-1; Species: mouse, Mus musculus. BF T05015; c-Ets-1; Species: rat, Rattus norvegicus. BF T00114; c-Ets-1 54; Species: chick, Gallus gallus. BF T00115; c-Ets-1 68; Species: chick, Gallus gallus. BF T02040; c-Ets-1A; Species: clawed frog, Xenopus laevis. BF T02123; c-Ets-1B; Species: clawed frog, Xenopus laevis. BF T00113; c-Ets-2; Species: human, Homo sapiens. BF T01397; c-Ets-2; Species: mouse, Mus musculus. BF T00116; c-Ets-2 58-64; Species: chick, Gallus gallus. BF T02041; c-Ets-2A; Species: clawed frog, Xenopus laevis. BF T02127; c-Ets-2B; Species: clawed frog, Xenopus laevis. BF T01113; ELF-1; Species: human, Homo sapiens. BF T05012; Elf-1; Species: mouse, Mus musculus. BF T05014; Elf-1; Species: rat, Rattus norvegicus. BF T05018; ELFR; Species: human, Homo sapiens. BF T00250; Elk-1; Species: human, Homo sapiens. BF T00265; Erg-1; Species: human, Homo sapiens. BF T00266; Erg-2; Species: human, Homo sapiens. BF T01400; Ets-1 deltaVII; Species: human, Homo sapiens. BF T02066; Fli-1; Species: human, Homo sapiens. BF T06078; Fli-1; Species: zebra fish, Brachydanio rerio. BF T02067; Fli-1; Species: clawed frog, Xenopus laevis. BF T01408; Fli-1; Species: mouse, Mus musculus. BF T01402; GABP-alpha; Species: mouse, Mus musculus. BF T01390; GABP-alpha; Species: human, Homo sapiens. BF T00268; GABP-alpha:GABP-beta; Species: human, Homo sapiens. BF T00298; GABP-alpha:GABP-beta; Species: mouse, Mus musculus. BF T01391; GABP-beta1; Species: human, Homo sapiens. BF T01403; GABP-beta1; Species: mouse, Mus musculus. BF T01392; GABP-beta2; Species: human, Homo sapiens. BF T05021; NERF-1a; Species: human, Homo sapiens. BF T05022; NERF-1b; Species: human, Homo sapiens. BF T05023; NERF-2; Species: human, Homo sapiens. BF T01414; Net; Species: human, Homo sapiens. BF T01413; Net; Species: mouse, Mus musculus. BF T01409; p38erg; Species: human, Homo sapiens. BF T02130; p49erg; Species: human, Homo sapiens. BF T01805; p55; Species: human, Homo sapiens. BF T02129; p55erg; Species: human, Homo sapiens. BF T00686; PEA3; Species: rat, Rattus norvegicus. BF T02832; PEA3; Species: domestic pig, Sus scrofa. BF T00685; PEA3; Species: human, Homo sapiens. BF T00684; PEA3; Species: mouse, Mus musculus. BF T02068; PU.1; Species: human, Homo sapiens. BF T00703; PU.1; Species: chick, Gallus gallus. BF T00702; PU.1; Species: mouse, Mus musculus. BF T00737; SAP-1a; Species: human, Homo sapiens. BF T02128; SAP-1b; Species: human, Homo sapiens. BF T01401; Spi-B; Species: human, Homo sapiens. BF T00801; TCF; Species: human, Homo sapiens. BF T01399; TCF; Species: mouse, Mus musculus. BF T04998; Tel-2a; Species: human, Homo sapiens. BF T04886; Tel-2b; Species: human, Homo sapiens. BF T04999; Tel-2c; Species: human, Homo sapiens. BF T05000; Tel-2d; Species: human, Homo sapiens. BF T05001; Tel-2e; Species: human, Homo sapiens. BF T05002; Tel-2f; Species: human, Homo sapiens. BF T01417; TEL1; Species: human, Homo sapiens. XX P0 A C G T 01 41 12 20 8 A 02 3 55 5 18 C 03 12 2 0 67 T 04 0 0 0 81 T 05 0 81 0 0 C 06 1 77 0 3 C 07 4 8 14 55 T 08 5 33 31 12 S XX BA 81 compiled sequences including 37 TRANSCompel sites XX BS GGTTCCTC; R01068; 14; 8;; p. BS GCTTCCGC; R01155; 6; 8;; p. BS ACTTCCTG; R01224; 2; 8;; n. BS ACATCCTC; R01639; 1; 8;; n. BS ACTTCCTG; R01711; 5; 8;; p. BS GCTTCCGT; R01837; 4; 8;; n. BS ACTTCCGC; R01993; -1; 8;; n. BS ACATCCGT; R01995; -1; 8;; n. BS ACATCCGC; R01996; 3; 8;; n. BS ACTTCCTG; R01999; 2; 8;; n. BS GCTTCCTG; R02097; 2; 8;; n. BS ACATCCTG; R02414; 3; 8;; n. BS TCATCCAA; R03058; 14; 8;; n. BS AGTTCCTC; R03675; -2; 8;; p. BS GCTTCCTG; R04065; 2; 8;; n. BS ACTTCTGC; R04274; 1; 8;; p. BS CTTTCCTT; R04338; 1; 8;; n. BS TTTTCCTT; R04339; -2; 8;; p. BS CCTTCCCG; R04343; -1; 8;; n. BS GTTTCAAA; R04345; 10; 8;; n. BS CCCTCCCG; R04350; 11; 8;; p. BS CCTTCCTC; R04413; -2; 8;; p. BS GCCTCCTA; R04722; 1; 8;; p. BS GCTTCCTG; R08168; 6; 8;; n. BS ACATCCTC; R08269; 10; 8;; p. BS ATTTCCTC; R08482; 1; 8;; n. BS ATTTCCTC; R08492; 2; 8;; n. BS ACTTCCTG; R12017; 9; 8;; n. BS ACTTCCTG; R12019; 4; 8;; n. BS ACTTCCTG; R12032; 13; 8;; p. BS ATTTCCTC; R12070; 13; 8;; n. BS GCTTCCTG; R12086; 10; 8;; n. BS ATTTCCTC; R12088; 11; 8;; n. BS GCTTCCTG; R12089; 9; 8;; n. BS CCTTCCCC; R12090; 12; 8;; n. BS CCTTCCTG; R12091; 11; 8;; n. BS ATTTCCTT; R12538; 10; 8;; n. BS ACATCCTC; R12728; 7; 8;; n. BS ACATCCGG; R13222; 4; 8;; n. BS TCTTCCTT; R13246; 3; 8;; p. BS GCTTCCTC; R13247; 8; 8;; p. BS GTTTCCCT; R13565; 4; 8;; n. BS GCTTCCGG; R14156; 8; 8;; n. BS CGTTCCTC; R14429; 3; 8;; n. BS ATTTCCTC; C00007, s00011; 1; 8;; p. BS ATTTCCTT; C00079, s00119; -1; 8;; p. BS ATTTCCTC; C00081, s00123; -1; 8;; p. BS ACTTCCGG; C00127, s00191; 2; 8;; n. BS CATTCTGT; C00133, s00201; -3; 8;; n. BS CATTCCTG; C00136, s00207; 2; 8;; n. BS TCTTCCTG; C00137, s00209; -2; 8;; p. BS CCTTCCTG; C00139, s00214; 2; 8;; p. BS GCTTCCTG; C00173, s00279; 1; 8;; n. BS ACTTCCTC; C00177, s00287; 4; 8;; n. BS ATATCCTG; C00184, s00300; 1; 8;; n. BS ACATCCTG; C00185, s00302; 1; 8;; n. BS GCTTCCTC; C00186, s00305; 1; 8;; n. BS TCTTCCCC; C00224, s00377; 1; 8;; n. BS ACTTCCTC; C00231, s00390; 1; 8;; n. BS GCATCCGG; C00233, s00394; -1; 8;; p. BS ACATCCGC; C00238, s00403; 2; 8;; n. BS ACTTCCTG; C00240, s00407; 1; 8;; n. BS ATTTCCTC; C00249, s00421; -2; 8;; p. BS ACTTCTTG; C00250, s00422; -1; 8;; n. BS ACTTCCCT; C00251, s00425; 2; 8;; n. BS CCTTCCCC; C00252, s00427; 4; 8;; n. BS AGTTCCCT; C00255, s00431; 3; 8;; n. BS CTTTCCGC; C00257, s00433; -1; 8;; p. BS ACTTCCTC; C00260, s00439; -2; 8;; p. BS ATTTCCTC; C00262, s00444; -1; 8;; p. BS GCTTCCTC; C00263, s00445; -1; 8;; n. BS TCTTCCTG; C00264, s00448; 1; 8;; p. BS GCTTCCTC; C00266, s00451; -2; 8;; p. BS ACTTCCTC; C00268, s00455; -2; 8;; p. BS ACTTCCTT; C00274, s00466; 1; 8;; n. BS ACTTCCTC; C00275, s00468; 1; 8;; p. BS GTTTCCTG; C00276, s00470; -2; 8;; p. BS TATTCCAA; C00276, s00471; -2; 8;; n. BS ATTTCCTG; C00314, s00549; -2; 8;; p. BS TGTTCCGG; C00359, s00623; -2; 8;; p. BS GCTTCCAA; C00405, s00711; -1; 8;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00972 XX ID V$IRF_Q6_01 XX DT 13.02.2004 (created); dtc. DT 25.06.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA IRF XX BF T00423; IRF-1; Species: human, Homo sapiens. BF T00422; IRF-1; Species: mouse, Mus musculus. BF T00424; IRF-1; Species: rat, Rattus norvegicus. BF T05092; IRF-1; Species: chick, Gallus gallus. BF T05154; IRF-10; Species: chick, Gallus gallus. BF T01491; IRF-2; Species: human, Homo sapiens. BF T00425; IRF-2; Species: mouse, Mus musculus. BF T05091; IRF-2; Species: chick, Gallus gallus. BF T01571; IRF-3; Species: chick, Gallus gallus. BF T04673; IRF-3; Species: human, Homo sapiens. BF T05128; IRF-3; Species: mouse, Mus musculus. BF T01412; IRF-4; Species: mouse, Mus musculus. BF T01572; IRF-4; Species: mouse, Mus musculus. BF T04929; IRF-4; Species: human, Homo sapiens. BF T05103; IRF-5; Species: mouse, Mus musculus. BF T05104; IRF-5; Species: human, Homo sapiens. BF T05144; IRF-7; Species: mouse, Mus musculus. BF T04674; IRF-7A; Species: human, Homo sapiens. BF T05106; IRF-7H; Species: human, Homo sapiens. BF T00402; IRF-8; Species: mouse, Mus musculus. BF T02038; IRF-8; Species: human, Homo sapiens. BF T02037; IRF-8; Species: chick, Gallus gallus. BF T01456; IRF-9; Species: human, Homo sapiens. BF T05096; IRF-9; Species: mouse, Mus musculus. BF T00428; ISGF-3; Species: human, Homo sapiens. BF T02530; ISGF-3; Species: mouse, Mus musculus. XX P0 A C G T 01 16 1 18 1 R 02 23 0 9 4 A 03 36 0 0 0 A 04 36 0 0 0 A 05 6 9 17 4 N 06 8 3 4 21 T 07 1 0 35 0 G 08 35 0 1 0 A 09 32 2 0 2 A 10 31 1 0 4 A 11 7 11 12 6 N XX BA 36 compiled GENOMIC sequences including 11 TRANSCompel sites XX BS GAAAATGAAAC; R00001; 3; 11;; p. BS GAAATAGAAAC; R00003; 3; 11;; p. BS GGAAACGAAAC; R00163; 4; 11;; p. BS GAAACAGAAAC; R00423; 5; 11;; n. BS GAAATGGAAAG; R00915; 5; 11;; p. BS AGAAGTGAAAG; R00917; -2; 11;; p. BS GAAAGTGAAAC; R00950; 5; 11;; n. BS AGAAGTGAAAC; R01051; 8; 11;; n. BS AGAAGTGAAAC; R01061; 7; 11;; n. BS GAAACTGAAAA; R01094; 10; 11;; p. BS GAAAGTGAAAC; R02402; 3; 11;; n. BS GAAAAGGAACA; R08127; 2; 11;; n. BS ATAATGGAAAA; R08128; 2; 11;; p. BS GGAAGAGATTG; R12710; -2; 11;; n. BS AAAACTGAAAG; R12726; 7; 11;; n. BS TGAAGCGAAAG; R12732; 12; 11;; n. BS AAAACAGAAAA; R12764; 2; 11;; p. BS AAAAATGAAAG; R12766; -1; 11;; n. BS CAAAGTGACTG; R13011; -2; 11;; p. BS GGAAGTGATTT; R13141; -2; 11;; p. BS GAAAGTGAAAG; R13380; 10; 11;; p. BS GTAACGAAAAT; R13438; 3; 11;; p. BS ATAAAAGAAAA; R13560; 4; 11;; p. BS GAAAGTGAAAG; R13576; 11; 11;; p. BS AAAAGAGAATT; R14440; 20; 11;; p. BS AGAAGTGAAAC; C00060, s00094; 2; 11;; n. BS AGAAGTGAAAC; C00250, s00423; -5; 11;; p. BS GAAAGCGGCAA; C00260, s00438; -6; 11;; n. BS AAAACTGAAAC; C00300, s00523; 2; 11;; n. BS GAAATAGAAAG; C00332, s00581; 2; 11;; n. BS AAAACTGAAAG; C00333, s00582; 2; 11;; p. BS AAAACTGAAAT; C00334, s00583; -6; 11;; n. BS GAAACTGAAAT; C00336, s00586; -5; 11;; n. BS AAAAGTGAAAG; C00337, s00588; 9; 11;; n. BS GAAAGTGAAAT; C00339, s00591; 2; 11;; n. BS ATAAAAGAAAA; C00386, s00673; -5; 11;; p. XX RN [1]; RE0024406. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 4:0003 (2004). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00973 XX ID V$E2A_Q6 XX DT 13.02.2004 (created); dtc. DT 05.03.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA E2A XX BF T00204; E12; Species: human, Homo sapiens. BF T00675; E12; Species: rat, Rattus norvegicus. BF T01786; E12; Species: mouse, Mus musculus. BF T01787; E12; Species: clawed frog, Xenopus laevis. BF T00207; E47; Species: human, Homo sapiens. BF T00674; E47; Species: rat, Rattus norvegicus. BF T01788; E47; Species: mouse, Mus musculus. BF T00945; EMF1; Species: clawed frog, Xenopus. BF T01503; HEB; Species: human, Homo sapiens. BF T00406; INSAF; Species: hamster. BF T01188; INSAF; Species: rat, Rattus norvegicus. BF T01189; INSAF; Species: mouse, Mus musculus. BF T01794; INSAF; Species: human, Homo sapiens. BF T00431; ITF; Species: human, Homo sapiens. BF T00432; ITF-1; Species: human, Homo sapiens. BF T00433; ITF-2; Species: human, Homo sapiens. BF T00484; MASH-1; Species: rat, Rattus norvegicus. BF T01619; MASH-1; Species: mouse, Mus musculus. BF T01620; MASH-1; Species: human, Homo sapiens. BF T00485; MASH-2; Species: rat, Rattus norvegicus. BF T00506; MEF1; Species: mouse, Mus musculus. BF T04675; MRF-2; Species: human, Homo sapiens. BF T00512; MRF4; Species: rat, Rattus norvegicus. BF T01537; MRF4; Species: mouse, Mus musculus. BF T01538; MRF4; Species: chick, Gallus gallus. BF T01539; MRF4; Species: clawed frog, Xenopus. BF T00519; Myf-3; Species: human, Homo sapiens. BF T00520; Myf-4; Species: human, Homo sapiens. BF T00521; Myf-5; Species: human, Homo sapiens. BF T00949; Myf-5; Species: clawed frog, Xenopus laevis. BF T01534; Myf-5; Species: mouse, Mus musculus. BF T01535; Myf-5; Species: cattle, Bos taurus. BF T01536; Myf-5; Species: chick, Gallus domesticus. BF T03903; myf-5; Species: Common carp, Cyprinus carpio. BF T03905; myf-5; Species: zebra fish, Brachydanio rerio. BF T00522; Myf-6; Species: human, Homo sapiens. BF T00525; MyoD; Species: human, Homo sapiens. BF T00524; MyoD; Species: clawed frog, Xenopus laevis. BF T00526; MyoD; Species: mouse, Mus musculus. BF T00527; MyoD; Species: monkey, Cercopithecus aethiops. BF T01128; MyoD; Species: chick, Gallus gallus. BF T01551; MyoD; Species: quail, Coturnix coturnix. BF T03907; myoD; Species: zebra fish, Brachydanio rerio. BF T03912; myoD (275 AA); Species: rainbow trout, Oncorhynchus mykiss. BF T03911; myoD (376 AA); Species: rainbow trout, Oncorhynchus mykiss. BF T00528; myogenin; Species: mouse, Mus musculus. BF T01531; myogenin; Species: chick, Gallus gallus. BF T01532; myogenin; Species: rat, Rattus norvegicus. BF T01533; myogenin; Species: quail, Coturnix coturnix. BF T03900; myogenin; Species: Common carp, Cyprinus carpio. BF T03901; myogenin; Species: rainbow trout, Oncorhynchus mykiss. XX P0 A C G T 01 0 22 0 0 C 02 22 0 0 0 A 03 1 13 4 4 C 04 1 21 0 0 C 05 0 0 0 22 T 06 0 0 22 0 G 07 2 8 4 8 N 08 1 12 3 6 Y XX BA 22 compiled sequences including 3 TRANSCompel sites XX BS CAGCTGTC; R00012; 4; 8;; p. BS CACCTGTT; R00014; -1; 8;; n. BS CACCTGTC; R00019; 8; 8;; p. BS CACCTGCT; R00242; 6; 8;; p. BS CACCTGCC; R00881; 1; 8;; n. BS CATCTGCC; R00900; 3; 8;; p. BS CAACTGAC; R02452; 3; 8;; p. BS CACCTGCT; R03074; 3; 8;; n. BS CAGCTGGC; R03075; 2; 8;; p. BS CACCTGTT; R03076; 3; 8;; n. BS CACCTGCC; R03109; 1; 8;; p. BS CACCTGTC; R03330; 8; 8;; p. BS CACCTGTT; R03471; 2; 8;; n. BS CATCTGTC; R04020; 4; 8;; p. BS CAGCTGAC; R04021; 19; 8;; p. BS CATCTGCG; R04046; 20; 8;; p. BS CACCTGCT; R04418; 11; 8;; p. BS CATCTGGG; R08512; 1; 8;; p. BS CACCTGGG; R13322; 9; 8;; n. BS CACATGTC; C00034, s00041; 1; 8;; n. BS CACCTGCA; C00031, s00044; 5; 8;; p. BS CAGCTGGC; C00032, s00046; 3; 8;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00974 XX ID V$SMAD_Q6_01 XX DT 13.02.2004 (created); dtc. DT 08.03.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA SMAD XX BF T03885; Smad1; Species: human, Homo sapiens. BF T03890; Smad1; Species: zebra fish, Brachydanio rerio. BF T03889; Smad1; Species: chick, Gallus gallus. BF T04254; Smad1; Species: mouse, Mus musculus. BF T04432; Smad1; Species: clawed frog, Xenopus laevis. BF T04429; Smad1; Species: rat, Rattus norvegicus. BF T03888; Smad1; Species: quail, Coturnix coturnix. BF T03886; Smad1.1; Species: clawed frog, Xenopus laevis. BF T03892; Smad10; Species: clawed frog, Xenopus laevis. BF T04095; Smad2; Species: human, Homo sapiens. BF T04150; Smad2; Species: zebra fish, Brachydanio rerio. BF T04433; Smad2; Species: clawed frog, Xenopus laevis. BF T04247; Smad2; Species: chick, Gallus gallus. BF T04273; Smad2; Species: mouse, Mus musculus. BF T04232; Smad2; Species: rat, Rattus norvegicus. BF T04442; Smad2 (437 AA); Species: human, Homo sapiens. BF T04096; Smad3; Species: human, Homo sapiens. BF T04149; Smad3; Species: zebra fish, Brachydanio rerio. BF T04210; Smad3; Species: mouse, Mus musculus. BF T04248; Smad3; Species: chick, Gallus gallus. BF T04251; Smad3; Species: domestic pig, Sus scrofa. BF T04431; Smad3; Species: rat, Rattus norvegicus. BF T05271; Smad3:Smad4; Species: human, Homo sapiens. BF T03882; Smad4; Species: rat, Rattus norvegicus. BF T03884; Smad4; Species: zebra fish, Brachydanio rerio. BF T05067; Smad4; Species: mouse, Mus musculus. BF T04292; Smad4; Species: human, Homo sapiens. BF T04252; Smad4; Species: domestic pig, Sus scrofa. BF T04153; Smad4alpha; Species: clawed frog, Xenopus laevis. BF T04154; Smad4beta; Species: clawed frog, Xenopus laevis. BF T04554; Smad4delta3; Species: human, Homo sapiens. BF T04559; Smad4delta4-6; Species: human, Homo sapiens. BF T04560; Smad4delta4-7; Species: human, Homo sapiens. BF T04558; Smad4delta5-6; Species: human, Homo sapiens. BF T04557; Smad4delta6; Species: human, Homo sapiens. BF T04152; Smad5; Species: zebra fish, Brachydanio rerio. BF T04213; Smad5; Species: mouse, Mus musculus. BF T04222; Smad5; Species: human, Homo sapiens. BF T04235; Smad5; Species: rat, Rattus norvegicus. BF T04245; Smad5; Species: chick, Gallus gallus. BF T04295; Smad5; Species: clawed frog, Xenopus laevis. BF T04236; Smad6; Species: mouse, Mus musculus. BF T04159; Smad6; Species: clawed frog, Xenopus laevis. BF T04220; Smad6; Species: human, Homo sapiens. BF T04246; Smad6; Species: chick, Gallus gallus. BF T04234; Smad7; Species: mouse, Mus musculus. BF T04156; Smad7; Species: clawed frog, Xenopus laevis. BF T04217; Smad7; Species: human, Homo sapiens. BF T04244; Smad7; Species: rat, Rattus norvegicus. BF T04249; Smad7; Species: chick, Gallus gallus. BF T04215; Smad8; Species: mouse, Mus musculus. BF T04238; Smad8; Species: rat, Rattus norvegicus. BF T04250; Smad8; Species: chick, Gallus gallus. BF T04464; Smad8; Species: clawed frog, Xenopus laevis. XX P0 A C G T 01 4 4 1 11 T 02 8 1 6 5 N 03 2 3 10 5 G 04 3 7 6 4 N 05 0 15 0 5 C 06 20 0 0 0 A 07 0 0 20 0 G 08 17 1 2 0 A 09 0 20 0 0 C 10 11 2 1 6 W 11 2 6 8 4 N XX BA 20 compiled sequences including 5 TRANSCompel sites XX BS GAGTCAGACAC; R09881; 9; 11;; p. BS CAGGCAGACAG; R09952; -7; 11;; p. BS TGTCCAGACTC; R09967; 3; 11;; n. BS CAATTAGGCCG; R10056; -6; 11;; p. BS TTCTCAGACAG; R10061; -4; 11;; p. BS CGTCTAGACAC; R10063; 12; 11;; n. BS ATGGCAGACAT; R10069; 17; 11;; p. BS TATGCAGACAA; R10092; 15; 11;; p. BS TAGATAGACTG; R10093; -5; 11;; p. BS CTTACAGACTG; R13039; -4; 11;; p. BS TACTCAGACTT; R13041; 4; 11;; n. BS TTGCCAGACTC; R13211; 1; 11;; p. BS TGACTAGACAG; R13582; 3; 11;; n. BS TTGGCAGGCGG; R13585; -3; 11;; p. BS TAGACAGACAG; R14158; 8; 11;; p. BS AGGCCAGACAT; C00196, s00325; -3; 11;; p. BS AACCTAGACAA; C00198, s00328; -2; 11;; p. BS TGTCCAGACTC; C00199, s00330; -2; 11;; n. BS AGGGCAGACAT; C00200, s00333; -2; 11;; n. BS TCGGCAGCCCC; C00201, s00334; 12; 11;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00975 XX ID V$RFX_Q6 XX DT 13.02.2004 (created); dtc. DT 08.03.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA RFX XX BF T00229; RFX1; Species: rat, Rattus norvegicus. BF T00231; RFX1; Species: mouse, Mus musculus. BF T01666; RFX1; Species: mouse, Mus musculus. BF T00230; RFX1; Species: human, Homo sapiens. BF T00728; RFX1; Species: human, Homo sapiens. BF T00909; RFX1; Species: human, Homo sapiens. BF T01673; RFX1; Species: human, Homo sapiens. BF T05438; RFX1:RFX2; Species: human, Homo sapiens. BF T05439; RFX1:RFX3; Species: human, Homo sapiens. BF T01667; RFX2; Species: human, Homo sapiens. BF T01669; RFX2; Species: mouse, Mus musculus. BF T01670; RFX3; Species: human, Homo sapiens. BF T01671; RFX3; Species: mouse, Mus musculus. BF T05433; RFX4; Species: human, Homo sapiens. BF T01672; RFX5; Species: human, Homo sapiens. BF T05440; RFX5; Species: mouse, Mus musculus. BF T05444; RFX5:RFXAP:RFXANK; Species: human, Homo sapiens. BF T05441; RFXANK; Species: human, Homo sapiens. BF T05445; RFXANK; Species: mouse, Mus musculus. BF T05446; RFXANK short isoform; Species: mouse, Mus musculus. BF T05443; RFXAP; Species: human, Homo sapiens. BF T05447; RFXAP; Species: mouse, Mus musculus. XX P0 A C G T 01 2 5 3 0 S 02 3 3 0 4 H 03 0 0 10 0 G 04 3 0 0 7 T 05 0 0 0 10 T 06 0 1 9 0 G 07 2 7 0 1 C 08 0 5 4 1 S 09 4 1 3 2 N XX BA 10 compiled sequences including 1 TRANSCompel sites XX BS ATGTTCCCA; R00797; 16; 9;; n. BS CAGTTGCCT; R01237; 8; 9;; n. BS CAGTTGCCA; R01940; 6; 9;; n. BS CCGTTGCCC; R02570; -2; 9;; p. BS ACGTTGTCT; R03409; -2; 9;; p. BS GTGATGCGG; R03424; 10; 9;; p. BS CAGATGAGG; R03695; 9; 9;; p. BS GCGTTGCGA; R11434; 14; 9;; n. BS CTGTTGCTA; R13352; 9; 9;; n. BS GTGATGAGG; C00190, s00312; 13; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00976 XX ID V$AHRHIF_Q6 XX DT 13.02.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA AHRHIF XX BF T00018; AhR; Species: mouse, Mus musculus. BF T00194; AhR; Species: mouse, Mus musculus. BF T00019; AhR; Species: rat, Rattus norvegicus. BF T00195; AhR; Species: rat, Rattus norvegicus. BF T01795; AhR; Species: human, Homo sapiens. BF T02270; AhR; Species: guinea pig, Cavia porcellus. BF T05414; AhR; Species: pig, Sus scrofa. BF T05398; AhR; Species: rabbit, Oryctolagus cuniculus. BF T05394; AhR:Arnt; Species: human, Homo sapiens. BF T05395; AhR:Arnt; Species: mouse, Mus musculus. BF T05397; AhR:Arnt; Species: rabbit, Oryctolagus cuniculus. BF T05424; AhR2; Species: killifish, Fundulus heteroclitus. BF T05429; AhRR; Species: mouse, Mus musculus. BF T05456; AHRR:Arnt; Species: mouse, Mus musculus. BF T01346; Arnt; Species: human, Homo sapiens. BF T01797; Arnt; Species: mouse, Mus musculus. BF T01798; Arnt; Species: rat, Rattus norvegicus. BF T01796; Arnt (774 AA form); Species: human, Homo sapiens. BF T05059; ARNT2; Species: human, Homo sapiens. BF T01609; HIF-1; Species: human, Homo sapiens. BF T04667; HIF-1; Species: mouse, Mus musculus. BF T05404; HIF-1; Species: rat, Rattus norvegicus. BF T01610; HIF-1alpha; Species: human, Homo sapiens. XX P0 A C G T 01 6 10 12 19 N 02 20 0 27 0 R 03 1 46 0 0 C 04 0 0 47 0 G 05 0 0 0 47 T 06 0 0 47 0 G 07 13 22 5 7 N 08 5 11 25 6 G 09 9 13 17 8 N XX BA 47 compiled sequences XX BS AGCGTGACA; R00268; 3; 9;; p. BS TGCGTGAGA; R00270; 13; 9;; n. BS TGCGTGAGA; R02651; 12; 9;; p. BS AGCGTGCGT; R02652; 8; 9;; n. BS CGCGTGGAT; R02653; 12; 9;; p. BS CGCGTGAGA; R02654; 8; 9;; n. BS TACGTGCTG; R03219; 5; 9;; p. BS AACGTGCAG; R10172; 7; 9;; n. BS TACGTGGGC; R10227; 8; 9;; p. BS TACGTGCGC; R10350; 21; 9;; n. BS TACGTGCCT; R10395; 9; 9;; p. BS GACGTGACT; R10593; 9; 9;; n. BS GACGTGGGG; R10594; 8; 9;; p. BS TACGTGACG; R10595; 5; 9;; p. BS TGCGTGCGG; R10596; 9; 9;; p. BS CACGTGTAG; R10597; 7; 9;; n. BS GACGTGCGG; R10599; 4; 9;; n. BS GGCGTGCAG; R13159; 1; 9;; n. BS CGCGTGAGA; R13160; 1; 9;; n. BS TGCGTGCGC; R13161; 1; 9;; n. BS TGCGTGAGA; R13162; 1; 9;; n. BS CGCGTGACT; R13163; 3; 9;; p. BS TACGTGTGT; R13214; 14; 9;; n. BS CGCGTGCTG; R13226; 6; 9;; p. BS AGCGTGTTC; R13227; 4; 9;; n. BS GGCGTGTGC; R13228; 5; 9;; n. BS TGCGTGTGT; R13237; 10; 9;; n. BS CGCGTGACG; R13240; 8; 9;; n. BS GGCGTGGCA; R13248; 4; 9;; p. BS GGCGTGCGC; R13260; 5; 9;; p. BS TGCGTGTTT; R13262; 14; 9;; p. BS TGCGTGCCC; R13263; 14; 9;; p. BS TGCGTGACA; R13264; 3; 9;; p. BS CGCGTGCAG; R13268; 3; 9;; p. BS TGCGTGCCC; R13270; 13; 9;; p. BS AGCGTGAGC; R13274; 9; 9;; p. BS TACGTGGGC; R13286; 10; 9;; p. BS GGCGTGCGC; R13287; 11; 9;; p. BS GACGTGCTG; R13288; 6; 9;; p. BS GACGTGACA; R13291; 13; 9;; p. BS AAAGTGCGG; R13296; 6; 9;; p. BS TGCGTGTGG; R13354; -1; 9;; n. BS TACGTGCTG; R13355; 15; 9;; p. BS GACGTGCGG; R13356; 11; 9;; n. BS GACGTGCGC; R13357; 8; 9;; n. BS CACGTGCGC; R13358; 15; 9;; n. BS CACGTGCGG; R13359; 4; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00977 XX ID V$EBF_Q6 XX DT 13.02.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA EBF XX BF T01112; COE1; Species: mouse, Mus musculus. BF T05006; COE2; Species: mouse, Mus musculus. BF T05008; COE3; Species: mouse, Mus musculus. BF T01040; Olf-1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 1 2 2 K 02 0 0 0 5 T 03 0 5 0 0 C 04 0 5 0 0 C 05 0 5 0 0 C 06 0 2 0 3 Y 07 2 0 0 3 W 08 1 0 4 0 G 09 2 0 3 0 R 10 0 0 5 0 G 11 3 0 1 1 A XX BA 5 compiled sequences XX BS CTCCCCTGGGA; R03609; 6; 11;; n. BS GTCCCCAAGGA; R03611; 2; 11;; p. BS GTCCCTAGGGA; R03618; 9; 11;; p. BS TTCCCTTGAGG; R03620; 8; 11;; p. BS TTCCCTTGAGT; R03699; 8; 11;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00978 XX ID V$LEF1TCF1_Q4 XX DT 13.02.2004 (created); dtc. DT 05.03.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA LEF1TCF1 XX BF T00930; LEF-1; Species: mouse, Mus musculus. BF T00802; LEF-1; Species: human, Homo sapiens. BF T02905; LEF-1; Species: human, Homo sapiens. BF T03730; LEF-1; Species: rat, Rattus norvegicus. BF T02953; LEF-1; Species: zebra fish, Brachydanio rerio. BF T02963; LEF-1; Species: clawed frog, Xenopus laevis. BF T03553; LEF-1; Species: chick, Gallus gallus. BF T01389; LEF-1S; Species: mouse, Mus musculus. BF T01002; TCF-1; Species: human, Homo sapiens. BF T01109; TCF-1(P); Species: mouse, Mus musculus. BF T00999; TCF-1A; Species: human, Homo sapiens. BF T01000; TCF-1B; Species: human, Homo sapiens. BF T02945; TCF-1B; Species: mouse, Mus musculus. BF T01001; TCF-1C; Species: human, Homo sapiens. BF T01979; TCF-1E; Species: human, Homo sapiens. BF T01981; TCF-1F; Species: human, Homo sapiens. BF T01982; TCF-1G; Species: human, Homo sapiens. XX P0 A C G T 01 5 9 3 1 M 02 0 17 1 0 C 03 1 1 0 16 T 04 0 0 0 18 T 05 0 0 0 18 T 06 1 0 17 0 G 07 11 0 0 7 W 08 6 0 0 12 W 09 2 7 9 0 S 10 3 5 2 8 N 11 2 6 2 8 Y XX BA 18 compiled genomic sequences including 1 TRANSCompel site XX BS CCTTTGTTCTT; R03470; -2; 11;; n. BS CCTTTGTTCCC; R04278; -2; 11;; n. BS ACTTTATTCTC; R08268; 10; 11;; n. BS GCTTTGATCTT; R08576; 1; 11;; p. BS CCTTTGATGAT; R08589; -3; 11;; n. BS ACTTTGATGTA; R08591; -3; 11;; n. BS CCTTTGAAGCT; R08631; 8; 11;; p. BS AGTTTGAAGCG; R08649; -1; 11;; p. BS CCTTTGTAACT; R08809; 11; 11;; p. BS CCTTTGTTCTG; R08814; 10; 11;; p. BS GCTTTGATGAC; R08815; 10; 11;; p. BS GCTTTGAAGAT; R08816; 10; 11;; p. BS ACTTTGATGTC; R08820; 3; 11;; n. BS TCTTTGTTCCC; R08821; 6; 11;; p. BS CCATTGTTGGC; R08823; 6; 11;; p. BS CCTTTGAAGTA; R08824; 3; 11;; n. BS CCCTTGATCTT; R13042; 1; 11;; n. BS ACTTTGAAAGT; C00269, s00456; -3; 11;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00979 XX ID V$PAX6_Q2 XX DT 13.02.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA PAX6 XX BF T00681; Pax-6; Species: mouse, Mus musculus. BF T00682; Pax-6; Species: zebra fish, Brachydanio rerio. BF T01122; Pax-6; Species: human, Homo sapiens. BF T03008; Pax-6; Species: rat, Rattus norvegicus. BF T03019; Pax-6; Species: chick, Gallus gallus. BF T04416; Pax-6; Species: clawed frog, Xenopus laevis. BF T02933; Pax-6 (Pax-QNR); Species: Japanese quail, Coturnix coturnix japonica. BF T01814; Pax-6 / Pd-5a; Species: human, Homo sapiens. XX P0 A C G T 01 2 19 1 0 C 02 1 0 1 20 T 03 0 0 22 0 G 04 17 0 1 4 A 05 0 17 5 0 C 06 1 19 2 0 C 07 0 1 0 21 T 08 0 0 20 2 G 09 0 0 20 2 G 10 19 1 1 1 A 11 21 0 1 0 A 12 1 18 2 1 C 13 1 1 3 17 T 14 8 10 1 3 M XX BA 22 compiled sequences XX BS ATGAGCTGGCACTT; R03013; 6; 14;; p. BS GGGGCCTGGAGGGC; R04285; 18; 14;; n. BS CTGAGGCGTGACCA; R04286; 9; 14;; p. BS CTGAGATTGAAGGG; R08703; 15; 14;; p. BS ATGAGGTGGAAAAT; R08705; 9; 14;; p. BS CAGTGCTTTTACGC; R08706; 16; 14;; n. BS CTGACCTGGAACTA; R08825; 1; 14;; p. BS CTGACCTGGAACTC; R08826; 12; 14;; n. BS CTGTCCTGGAACTA; R08827; 18; 14;; n. BS CTGACCTGGAACTC; R08828; 1; 14;; p. BS CTGACCTGGAACTA; R08829; 1; 14;; p. BS CTGACCTGGAACTC; R08830; 2; 14;; n. BS CTGACCTGGAACTT; R08831; 1; 14;; p. BS CTGTCCTGGAACTA; R08832; 2; 14;; n. BS CTGACCTGGAACTC; R08833; 2; 14;; n. BS CTGACCTGGAACTC; R08834; 1; 14;; p. BS CTGACCTGGAACTC; R08835; 1; 14;; p. BS CTGACCTGGAACTC; R08836; 2; 14;; n. BS CTGACCTGGAACTA; R08837; 1; 14;; p. BS CTGTCCTGGAACTA; R08838; 2; 14;; n. BS CTGACCTGGAATTC; R08839; 2; 14;; n. BS CTGACCTGGAACTA; R08840; 1; 14;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00980 XX ID V$TBP_Q6 XX DT 13.02.2004 (created); dtc. DT 25.06.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TBP XX BF T00796; TBP; Species: mouse, Mus musculus. BF T00794; TBP; Species: human, Homo sapiens. BF T02111; TBP; Species: clawed frog, Xenopus. BF T00820; TFIID; Species: human, Homo sapiens. BF T00821; TFIID; Species: chick, Gallus gallus. BF T01159; TFIID; Species: mouse, Mus musculus. BF T01175; TFIID; Species: rat, Rattus norvegicus. XX P0 A C G T 01 1 1 1 17 T 02 0 0 0 20 T 03 0 0 0 20 T 04 15 2 1 2 A 05 2 0 0 18 T 06 12 3 2 3 A 07 2 8 5 5 N XX BA 20 compiled sequences XX BS GTTATAC; R00344; 8; 7;; n. BS CTTATAT; R00705; -1; 7;; n. BS TTTATAA; R00770; -1; 7;; n. BS TTTATAG; R00996; -1; 7;; n. BS TTTATTG; R01167; 3; 7;; p. BS ATTATAT; R01732; 2; 7;; n. BS TTTATCG; R02014; 4; 7;; n. BS TTTAAGC; R02688; -1; 7;; n. BS TTTGAAG; R02749; -1; 7;; n. BS TTTCTTC; R03160; 12; 7;; p. BS TTTCTAT; R03165; 2; 7;; n. BS TTTATGA; R03167; 2; 7;; n. BS TTTATAT; R03171; 4; 7;; p. BS TTTATCC; R03182; -1; 7;; n. BS TTTATTC; R03195; 3; 7;; n. BS TTTTTAC; R04010; -1; 7;; n. BS TTTATAT; R08513; -1; 7;; n. BS TTTTTCC; R11725; 15; 7;; p. BS TTTATAG; R12021; 9; 7;; n. BS TTTATAC; R14383; 5; 7;; n. XX RN [1]; RE0024406. RA TRANSFAC_Team. RT Revision of TRANSFAC MATRIX entries RL TRANSFAC Reports 4:0003 (2004). RN [2]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00981 XX ID V$CREBATF_Q6 XX DT 13.02.2004 (created); dtc. DT 08.03.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA CREBATF XX BF T01379; 120-kDa CRE-binding protein; Species: human, Homo sapiens. BF T00442; 47-kDa CRE bind. prot.; Species: rat, Rattus norvegicus. BF T00051; ATF; Species: human, Homo sapiens. BF T00968; ATF-1; Species: human, Homo sapiens. BF T01304; ATF-1; Species: mouse, Mus musculus. BF T00167; ATF-2; Species: human, Homo sapiens. BF T01303; ATF-4; Species: human, Homo sapiens. BF T00052; ATF-a; Species: human, Homo sapiens. BF T00053; ATF-adelta; Species: human, Homo sapiens. BF T00054; ATF-like; Species: clawed frog, Xenopus. BF T01158; ATF/CREB; Species: gibbon ape, Hylobates lar. BF T01802; ATF2; Species: human, Homo sapiens. BF T01095; ATF3; Species: rat, Rattus norvegicus. BF T01313; ATF3; Species: human, Homo sapiens. BF T04850; ATF3; Species: mouse, Mus musculus. BF T04854; ATF4; Species: mouse, Mus musculus. BF T02052; ATF4 (381AA); Species: mouse, Mus musculus. BF T04877; ATF5; Species: human, Homo sapiens. BF T04742; ATF6; Species: human, Homo sapiens. BF T02056; CRE-BP1; Species: mouse, Mus musculus. BF T01017; CRE-BP2; Species: mouse, Mus musculus. BF T01382; CRE-BP2; Species: rat, Rattus norvegicus. BF T00989; CREB; Species: mouse, Mus musculus. BF T00164; CREB; Species: rat, Rattus norvegicus. BF T00163; CREB; Species: human, Homo sapiens. BF T01108; CREB; Species: human, Homo sapiens. BF T02361; CREBbeta; Species: mouse, Mus musculus. BF T01314; CREMalpha; Species: mouse, Mus musculus. BF T01803; CREMalpha; Species: human, Homo sapiens. BF T01315; CREMbeta; Species: mouse, Mus musculus. BF T01316; CREMgamma; Species: mouse, Mus musculus. BF T01309; CREMtau; Species: mouse, Mus musculus. BF T01919; CREMtau; Species: rat, Rattus norvegicus. BF T02108; CREMtau1; Species: mouse, Mus musculus. BF T02109; CREMtau2; Species: mouse, Mus musculus. BF T01602; CREMtaualpha; Species: mouse, Mus musculus. BF T00166; deltaCREB; Species: human, Homo sapiens. BF T00165; deltaCREB; Species: rat, Rattus norvegicus. XX P0 A C G T 01 17 12 25 6 N 02 0 0 1 59 T 03 0 0 60 0 G 04 59 0 1 0 A 05 1 51 0 8 C 06 0 0 60 0 G 07 4 12 3 41 T 08 20 25 7 8 N 09 31 5 13 11 A XX BA 60 compiled sequences including 8 TRANSCompel sites XX BS GTGACGTCA; R00288; 6; 9;; p. BS CTGACGTGT; R00309; -1; 9;; p. BS ATGACGTAG; R00322; 1; 9;; n. BS GTGACGTAG; R00349; 1; 9;; p. BS ATGACGTAA; R00356; 1; 9;; n. BS GTGACGCAA; R00454; 1; 9;; p. BS GTGACGTCA; R00456; -1; 9;; p. BS GTGACGTTT; R00471; 1; 9;; p. BS GTGACGTAG; R00479; 4; 9;; p. BS CTGACGTCT; R00777; 6; 9;; p. BS CTGACGTGT; R00779; 6; 9;; p. BS TTGACGACA; R00780; 7; 9;; p. BS TTGACGTCA; R00807; 5; 9;; p. BS CTGACGTCA; R00963; 8; 9;; p. BS GTGACGTCA; R01196; -1; 9;; p. BS CTGACGTAA; R01215; 1; 9;; n. BS CTGGCGTAG; R01256; -1; 9;; p. BS TTGACGTCA; R01492; -3; 9;; p. BS ATGACGAAC; R01534; 6; 9;; p. BS GTGACGTCT; R01562; -1; 9;; p. BS GTGACGTCA; R01941; 1; 9;; p. BS GTGACGTGG; R01990; 1; 9;; p. BS GTGACGTAG; R01992; 1; 9;; p. BS GTGACGTTT; R01997; 1; 9;; p. BS GTGACGATT; R02403; -1; 9;; p. BS GTGACGGAA; R02427; 7; 9;; p. BS CTGACGGAA; R02437; 5; 9;; p. BS GTGACGTCA; R02658; 6; 9;; p. BS GTGACGCTG; R02710; -1; 9;; p. BS ATGACGTAA; R02812; 4; 9;; p. BS GTGACGTAC; R02906; 14; 9;; n. BS ATGACGCGG; R03001; 6; 9;; n. BS CTGACGCAG; R03401; 1; 9;; n. BS ATGATGCTA; R03694; 12; 9;; p. BS ATGATGTCA; R03738; 1; 9;; n. BS ATGACGTCA; R03916; 12; 9;; p. BS GTGACGTGC; R03918; 4; 9;; n. BS TTGATGGCA; R03925; 18; 9;; p. BS GTGACGTCA; R03926; 7; 9;; p. BS GTGATGTCA; R04029; 3; 9;; n. BS CTGACGCAA; R04045; -1; 9;; p. BS ATGACGTCA; R04356; 5; 9;; p. BS TGGAAGCAA; R04501; 4; 9;; p. BS CTGATGTCA; R04882; 8; 9;; n. BS ATGACGTCA; R04884; 7; 9;; p. BS ATGACGTCT; R04963; 8; 9;; p. BS ATGACGCCA; R09065; 11; 9;; p. BS ATGACGTCC; R09519; 5; 9;; p. BS GTGATGCAA; R11477; 3; 9;; p. BS ATGACGTTT; R12331; 8; 9;; n. BS GTGACGTTA; R12540; 11; 9;; n. BS GTGACGCTG; R13066; 12; 9;; p. BS ATGACGCAT; C00382, s00103; 1; 9;; n. BS TTGACGTCA; C00088, s00135; -1; 9;; p. BS ATGATGTCA; C00093, s00140; 2; 9;; n. BS CTGATGACT; C00168, s00271; 3; 9;; n. BS GTGACGTAG; C00209, s00349; -1; 9;; n. BS CTGACGCAG; C00222, s00374; -1; 9;; n. BS GTGACGTGC; C00225, s00378; 2; 9;; n. BS ATGACGTGG; C00197, s00694; -1; 9;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00982 XX ID V$KROX_Q6 XX DT 13.02.2004 (created); dtc. DT 09.09.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA KROX XX BF T00241; Egr-1; Species: human, Homo sapiens. BF T00244; Egr-1; Species: mouse, Mus musculus. BF T04214; Egr-1; Species: mouse, Mus musculus. BF T00455; Egr-1; Species: mouse, Mus musculus. BF T02340; Egr-1; Species: monkey, Cercopithecus aethiops. BF T01200; Egr-1; Species: rat, Rattus norvegicus. BF T00242; Egr-2; Species: human, Homo sapiens. BF T00454; Egr-2; Species: mouse, Mus musculus. BF T00243; Egr-3; Species: human, Homo sapiens. BF T05539; Egr-3; Species: mouse, Mus musculus. BF T05190; Egr-4; Species: human, Homo sapiens. BF T00620; Egr-4; Species: rat, Rattus norvegicus. XX P0 A C G T 01 1 12 5 5 C 02 1 14 4 4 C 03 2 19 0 2 C 04 2 0 20 1 G 05 0 23 0 0 C 06 0 23 0 0 C 07 0 21 0 2 C 08 7 15 0 1 C 09 0 23 0 0 C 10 6 2 12 3 R 11 3 16 1 3 C 12 4 12 3 4 C 13 3 13 4 3 C 14 3 16 3 1 C XX BA 23 compiled sequences including 2 TRANSCompel sites XX BS CCCGCCCCCGCGCC; R00721; 6; 14;; n. BS CCCGCCCACCTCGG; R01614; 5; 14;; n. BS CTCGCCCCCGCGCC; R01615; 5; 14;; p. BS CTTGCCCCCGCCCC; R01616; 4; 14;; n. BS CCAGCCCCCGCCCC; R02085; 13; 14;; n. BS CCCGCCCACGCTAC; R03721; -3; 14;; n. BS TGCGCCTACTCCTC; R04733; -5; 14;; p. BS TCAGCCCACGCCCC; R04734; 8; 14;; n. BS TCCGCCCCCGCCCC; R04738; 7; 14;; n. BS GGCGCCCCCGCCCG; R04739; 5; 14;; n. BS CCCGCCCTCTCCCC; R04748; 10; 14;; n. BS CACGCCCCCAGGGA; R04749; 10; 14;; p. BS GCCGCCCCCGCTCC; R04853; 5; 14;; p. BS TTCGCCCCCGCCTG; R04878; 5; 14;; p. BS CCCGCCCCCGCCCC; R04893; 8; 14;; p. BS CCCTCCCCCCTCCC; R04894; 3; 14;; p. BS GGTGCCCACAACCC; R04907; 20; 14;; n. BS CTCGCCCCCAAAGA; R09545; -2; 14;; p. BS GCCACCCCCACAAC; R09547; -2; 14;; p. BS AGCGCCTACGCTCC; R10929; -1; 14;; p. BS CCCACCCCCTTAAA; R13412; 7; 14;; p. BS GCCGCCCCCACAGC; C00216, s00362; -2; 14;; p. BS TCCGCCCACAATTT; C00356, s00618; -5; 14;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00983 XX ID V$MAF_Q6_01 XX DT 13.02.2004 (created); dtc. DT 05.03.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA MAF XX BF T04791; Bach1; Species: human, Homo sapiens. BF T04793; Bach1; Species: mouse, Mus musculus. BF T05584; Bach1:MafK; Species: mouse, Mus musculus. BF T04792; Bach2; Species: mouse, Mus musculus. BF T04795; Bach2; Species: human, Homo sapiens. BF T01431; c-Maf (long form); Species: chick, Gallus gallus. BF T02201; c-Maf (short form); Species: chick, Gallus gallus. BF T01599; LCR-F1; Species: human, Homo sapiens. BF T01432; Maf; Species: mouse, Mus musculus. BF T05753; Maf; Species: rat, Rattus norvegicus. BF T01463; MAF; Species: mouse, Mus musculus. BF T05749; Maf; Species: human, Homo sapiens. BF T01439; MafB; Species: mouse, Mus musculus. BF T05754; MafB; Species: rat, Rattus norvegicus. BF T01433; MafB; Species: chick, Gallus gallus. BF T02202; MafB; Species: Japanese quail, Coturnix coturnix japonica. BF T05748; MafB; Species: human, Homo sapiens. BF T01436; MafF; Species: chick, Gallus gallus. BF T05747; MafF; Species: human, Homo sapiens. BF T05751; MafF; Species: mouse, Mus musculus. BF T01437; MafG; Species: chick, Gallus gallus. BF T04870; MafG; Species: human, Homo sapiens. BF T05750; MafG; Species: mouse, Mus musculus. BF T05752; MafG; Species: rat, Rattus norvegicus. BF T05727; MafG:MafG; Species: human, Homo sapiens. BF T01434; MafK; Species: chick, Gallus gallus. BF T01435; MafK; Species: mouse, Mus musculus. BF T04874; MafK; Species: human, Homo sapiens. BF T05675; MafK; Species: rat, Rattus norvegicus. BF T00557; NF-E2; Species: mouse, Mus musculus. BF T00558; NF-E2; Species: human, Homo sapiens. BF T01141; NF-E2; Species: chick, Gallus gallus. BF T01440; NF-E2 p45; Species: human, Homo sapiens. BF T01441; NF-E2 p45; Species: mouse, Mus musculus. BF T01442; Nrf1; Species: human, Homo sapiens. BF T02203; Nrf1; Species: mouse, Mus musculus. BF T05728; Nrf1:MafG; Species: human, Homo sapiens. BF T05712; Nrf1:MafK; Species: human, Homo sapiens. BF T01443; Nrf2; Species: human, Homo sapiens. BF T04938; Nrf2; Species: mouse, Mus musculus. BF T05668; Nrf2; Species: rat, Rattus norvegicus. BF T05729; Nrf2:MafG; Species: human, Homo sapiens. BF T05576; Nrf2:MafK; Species: mouse, Mus musculus. BF T05666; Nrf2:MafK; Species: rat, Rattus norvegicus. BF T05713; Nrf2:MafK; Species: human, Homo sapiens. BF T05710; Nrf3; Species: mouse, Mus musculus. BF T05714; Nrf3:MafK; Species: human, Homo sapiens. BF T01430; v-Maf; Species: Avian musculoaponeurotic fibrosarcoma virus AS42. XX P0 A C G T 01 4 4 5 13 N 02 3 5 16 2 G 03 4 15 2 5 C 04 4 0 6 16 T 05 1 2 22 1 G 06 20 0 2 4 A 07 1 0 21 4 G 08 1 1 5 19 T 09 0 21 4 1 C 10 26 0 0 0 A 11 6 2 8 10 N XX BA 26 compiled genomic sequences including 1 TRANSCompel site XX BS TGCTGAGTCAC; R01249; 1; 11;; n. BS AGGGCAGCCAG; R01250; 8; 11;; n. BS GGCAGGGGCAG; R01251; 1; 11;; n. BS CCAAGAAGGAA; R01595; 5; 11;; p. BS GCATGAGTCAG; R01946; 12; 11;; n. BS TGCTGAGTCAT; R02420; -1; 11;; p. BS GCATGAGTCAT; R02887; 2; 11;; n. BS CACTGAGTCAT; R03439; 10; 11;; n. BS TGCTGAGTCAT; R03440; 5; 11;; p. BS TATTGGGGGAA; R04188; -5; 11;; p. BS GATGGAGGGAA; R04192; -1; 11;; p. BS TGTGGAGGGAA; R04193; -1; 11;; p. BS TGCTGAGTCAA; R04288; -1; 11;; n. BS ATGGGTTATAG; R04293; -6; 11;; p. BS AGCTGAGTCAT; R11185; 10; 11;; n. BS TGCTGAGTCAT; R11187; 1; 11;; p. BS CGCTGAGTCAT; R13440; 9; 11;; p. BS TGCTGAGTCAA; R13461; 9; 11;; p. BS AGAGATGTCAT; R13577; 4; 11;; p. BS TCCAGATTCAG; R13578; 2; 11;; p. BS TGTTGAGTCAG; R13579; 2; 11;; p. BS TGCTGATTCAT; R13587; 7; 11;; p. BS GCCACAGTCAG; R13588; 8; 11;; p. BS TGCTTTGTCAT; R13590; 5; 11;; n. BS TGCTGAGTCAC; R14173; 5; 11;; p. BS CTTGGTTTCAG; C00162, s00259; -7; 11;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00984 XX ID V$PEBP_Q6 XX DT 13.02.2004 (created); dtc. DT 05.03.2004 (updated); oke. CO Copyright (C), Biobase GmbH. XX NA PEBP XX BF T01067; AML1; Species: human, Homo sapiens. BF T02444; AML1; Species: rat, Rattus norvegicus. BF T02457; AML1; Species: gibbon ape, Hylobates lar. BF T02256; AML1a; Species: human, Homo sapiens. BF T02245; AML1b; Species: human, Homo sapiens. BF T02246; AML1c; Species: human, Homo sapiens. BF T02223; AML2; Species: human, Homo sapiens. BF T05411; AML2; Species: rat, Rattus norvegicus. BF T02281; AML3; Species: human, Homo sapiens. BF T02441; AML3; Species: rat, Rattus norvegicus. BF T03983; AML3a; Species: human, Homo sapiens. BF T03984; AML3b; Species: human, Homo sapiens. BF T00683; PEBP2; Species: mouse, Mus musculus. BF T01061; PEBP2alpha; Species: mouse, Mus musculus. BF T02266; PEBP2alpha; Species: mouse, Mus musculus. BF T02459; PEBP2alpha; Species: human, Homo sapiens. BF T01063; PEBP2alphaA2; Species: mouse, Mus musculus. BF T02235; PEBP2alphaB1; Species: mouse, Mus musculus. BF T02241; PEBP2alphaB2; Species: mouse, Mus musculus. BF T05409; PEBP2alphaC1; Species: mouse, Mus musculus. BF T01064; PEBP2beta; Species: mouse, Mus musculus. BF T02259; PEBP2beta; Species: human, Homo sapiens. BF T02458; PEBP2beta; Species: gibbon ape, Hylobates lar. BF T02255; PEBP2beta1; Species: mouse, Mus musculus. BF T01065; PEBP2beta2; Species: mouse, Mus musculus. BF T02254; PEBP2beta3; Species: mouse, Mus musculus. BF T01062; Runx2; Species: mouse, Mus musculus. XX P0 A C G T 01 3 2 9 1 G 02 2 5 4 4 N 03 4 1 0 10 T 04 6 3 5 1 N 05 14 1 0 0 A 06 0 15 0 0 C 07 0 15 0 0 C 08 12 0 3 0 A 09 0 15 0 0 C 10 13 0 1 1 A 11 7 1 6 1 R 12 9 2 3 1 A 13 3 5 4 3 N 14 3 4 5 3 N 15 2 1 4 8 K XX BA 15 compiled genomic sequences including 7 TRANSCompel sites XX BS ACTGACCGCAGCTGG; R01221; 5; 15;; p. BS GATGACCGCAAAGGA; R02927; -1; 15;; p. BS ATTAACCACAACCAG; R04644; 8; 15;; p. BS GCAAACCACAAACTT; R05025; -2; 15;; n. BS GAAAACCACAGACGT; R05026; 1; 15;; n. BS GGTGACCACAAAATG; R05031; 10; 15;; n. BS GCTGCCCACAAACCT; R05032; 12; 15;; n. BS AGTCACCACTTTGGG; R14159; -5; 15;; n. BS GGCAACCACAGAGTT; C00145, s00226; -5; 15;; n. BS GGTCACCGCGAGAGT; C00173, s00280; -3; 15;; p. BS CTTAACCACAGATAT; C00181, s00295; -5; 15;; n. BS GCTTACCACAGATAT; C00184, s00301; -5; 15;; n. BS CCAGACCACAGGCCA; C00196, s00324; -3; 15;; p. BS GTTCACCACACGGCT; C00228, s00385; -5; 15;; n. BS TTAAACCACAAAACC; C00231, s00389; -3; 15;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00985 XX ID V$STRA13_01 XX DT 29.02.2004 (created); vma. DT 11.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Stra13 XX BF T02327; Stra13; Species: mouse, Mus musculus. XX P0 A C G T 01 3 9 7 4 N 02 2 9 3 9 Y 03 3 8 10 2 S 04 0 1 5 17 T 05 0 23 0 0 C 06 23 0 0 0 A 07 0 22 0 1 C 08 0 0 23 0 G 09 0 0 0 23 T 10 0 0 23 0 G 11 19 3 0 1 A 12 0 9 8 6 B 13 4 9 5 5 N 14 7 4 6 6 N XX BA 23 selected sequences (out of 26 selected sequences in total) XX BS gtggCACGTGatag; R14580; 1; 14;; p. BS ctgtCACGTGagcg; R14581; 1; 14;; p. BS gggtCACGTGagca; R14582; 1; 14;; p. BS ctctCACGTGccgt; R14583; 1; 14;; p. BS gcctCACGTGagga; R14584; 1; 14;; p. BS tatgCATGTGtcac; R14585; 1; 14;; p. BS agttCACGTGaggc; R14586; 1; 14;; p. BS ctgtCACGTGagcg; R14587; 1; 14;; p. BS cggtCACGTGagat; R14588; 1; 14;; p. BS gcctCACGTGatcg; R14589; 1; 14;; p. BS atgtCACGTGacta; R14590; 1; 14;; p. BS cccgCACGTGacga; R14591; 1; 14;; p. BS ctgtCACGTGattc; R14592; 1; 14;; p. BS ttatCACGTGagtt; R14593; 1; 14;; p. BS gagtCACGTGacca; R14594; 1; 14;; p. BS ccatCACGTGacta; R14595; 1; 14;; p. BS tcctCACGTGatca; R14596; 1; 14;; p. BS ttcgCACGTGatcg; R14597; 1; 14;; p. BS gtatCACGTGacct; R14598; 1; 14;; p. BS ccgcCACGTGattt; R14599; 1; 14;; p. BS accgCACGTGaggc; R14600; 1; 14;; p. BS ccgtCACGTGccat; R14601; 1; 14;; p. BS gcctCACGTGcccg; R14602; 1; 14;; p. XX CC sequences were selected by recombinant Stra-13 from a pool of random oligonucleotides in three rounds of selection and amplification [1] XX RN [1]; RE0023863. RX PUBMED: 12297495. RA St-Pierre B., Flock G., Zacksenhaus E., Egan S. E. RT Stra13 homodimers repress transcription through class B E-box elements. RL J. Biol. Chem. 277:46544-46551 (2002). XX // AC M00986 XX ID V$CHCH_01 XX DT 29.02.2004 (created); vma. DT 29.02.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Churchill XX BF T05880; ChCh; Species: chick, Gallus gallus. XX P0 A C G T 01 14 52 17 17 C 02 0 0 100 0 G 03 0 0 100 0 G 04 0 0 100 0 G 05 28 10 38 24 N 06 31 21 41 7 N XX BA 29 selected sequences (nucleotide frequencies given in percentage) XX CC sequences were selected from a pool of random 12-mers with a GST-ChCh fusion protein attached to Glutathione-agarose beads (5 rounds of selection and amplification) [1] XX RN [1]; RE0023944. RX PUBMED: 14651851. RA Sheng G., dos Reis M., Stern C. D. RT Churchill, a zinc finger transcriptional activator, regulates the transition between gastrulation and neurulation. RL Cell 115:603-613 (2003). XX // AC M00987 XX ID V$FOXP1_01 XX DT 05.05.2004 (created); vma. DT 05.05.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA FOXP1 XX BF T02289; FOXP1a; Species: mouse, Mus musculus. BF T04811; FOXP1a; Species: mouse, Mus musculus. XX P0 A C G T 01 1 0 0 75 T 02 0 0 0 76 T 03 75 0 1 0 A 04 0 0 0 76 T 05 0 0 0 76 T 06 0 0 0 76 T 07 23 0 52 1 G 08 0 0 0 76 T 09 28 0 48 0 R 10 0 0 0 76 T 11 0 0 0 76 T 12 0 0 48 28 K 13 0 0 28 48 K 14 0 25 1 50 Y 15 2 0 21 53 T 16 27 0 0 49 W 17 0 0 26 50 K 18 0 1 0 75 T 19 49 0 1 26 W 20 0 0 0 75 T XX BA 76 selected sequences XX BS TTATTTGTGTTGTCTTGTTT; R14843; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R14844; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R14845; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R14846; 1; 20;; p. BS TTATTTTTGTTGTGTTGCT; R14847; 2; 20; 21; p. BS ATGTTTATGTTGTTATTTGT; R14848; 1; 20;; p. BS TTATTTATATTTGTATTTAT; R14849; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15511; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15512; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15513; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15514; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15515; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15516; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15517; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15518; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15519; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15520; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15521; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15522; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15523; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15524; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15525; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15526; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15527; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15528; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15529; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15530; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15531; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15532; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15533; 1; 20;; p. BS TTATTTGTGTTGTCTTGTTT; R15534; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15535; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15536; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15537; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15538; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15539; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15540; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15541; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15542; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15543; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15544; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15545; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15546; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15547; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15548; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15549; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15550; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15551; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15552; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15553; 1; 20;; p. BS TTATTTATGTTGTTGTTTAT; R15554; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15555; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15556; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15557; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15558; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15559; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15560; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15561; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15562; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15563; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15564; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15565; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15566; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15567; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15568; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15569; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15570; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15571; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15572; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15573; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15574; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15575; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15576; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15577; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15578; 1; 20;; p. BS TTATTTGTATTTGTTATTAT; R15579; 1; 20;; p. XX CC sequences were selected by recombinant FOXP1a from a pool of ds oligonucleotides containing random 26-mers (four rounds of selection and amplification) [1] XX RN [1]; RE0024165. RX PUBMED: 12692134. RA Wang B., Lin D., Li C., Tucker P. RT Multiple domains define the expression and regulatory properties of Foxp1 forkhead transcriptional repressors. RL J. Biol. Chem. 278:24259-24268 (2003). XX // AC M00991 XX ID V$CDX_Q5 XX DT 14.05.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA CDX XX BF T01484; Cdx-1; Species: chick, Gallus gallus. BF T01999; Cdx-1; Species: mouse, Mus musculus. BF T02000; Cdx-1; Species: rat, Rattus norvegicus. BF T02001; Cdx-1; Species: clawed frog, Xenopus laevis. BF T03248; Cdx-1; Species: human, Homo sapiens. BF T02002; Cdx-2; Species: mouse, Mus musculus. BF T02003; Cdx-3; Species: golden (Syrian) hamster, Mesocricetus auratus. BF T03246; CDX2; Species: human, Homo sapiens. XX P0 A C G T 01 3 2 2 5 N 02 11 1 0 0 A 03 1 7 0 4 Y 04 5 2 1 4 N 05 6 2 5 0 R 06 5 4 0 4 H 07 3 6 1 3 N 08 8 2 2 1 A 09 6 0 6 1 R 10 9 1 2 1 A 11 1 2 6 4 K 12 3 3 0 7 T 13 5 4 0 4 H 14 8 0 3 2 A 15 0 0 0 13 T 16 10 1 2 0 A 17 8 2 0 3 A 18 9 2 2 0 A XX BA 13 compiled sequences including 1 TRANSCompel sites XX BS TATTGACCTACTCATAAA; R04239; 14; 18;; n. BS TACAACTGAGGTTGTAAA; R08848; 2; 18;; n. BS GACAAACAGGGCCATAAA; R08858; 9; 18;; n. BS AACCATAAAACAATTAAG; R08859; -2; 18;; n. BS CACAGCAAGATTTATGAC; R08873; 2; 18;; p. BS TATTGTCAGCGTAATATC; R08875; 6; 18;; p. BS AAAGGTCAGAGCTATAAA; R08886; 2; 18;; n. BS TACTAATAGAGTCTTGTA; R14653; 21; 18;; p. BS AACAAACTAATAAGTAAA; R14660; 7; 18;; n. BS TACCCAGGGAGCCATAAA; R14709; 13; 18;; p. BS CCTTGCCCATTTTATATG; R14710; 9; 18;; n. BS NNNNCCTAAAAAAATCCA; R14712; 18; 18;; n. BS GATAATAAAATTAGTACA; C00280, s00478; -8; 18;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00992 XX ID V$FOXP3_Q4 XX DT 14.05.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA FOXP3 XX BF T04279; FOXP3; Species: mouse, Mus musculus. BF T04280; FOXP3; Species: human, Homo sapiens. XX P0 A C G T 01 2 0 3 0 R 02 3 0 0 2 W 03 3 1 1 0 A 04 2 1 2 0 R 05 1 0 1 3 T 06 0 0 4 1 G 07 0 1 0 4 T 08 0 0 0 5 T 09 1 0 3 1 G 10 1 0 0 4 T 11 0 1 1 3 T 12 1 0 1 3 T 13 0 5 0 0 C 14 4 0 0 1 A 15 0 0 3 2 K 16 4 0 1 0 A 17 0 3 1 1 C XX BA 5 compiled sequences XX BS AACCTGCTGATTCTGAT; R14641; 17; 17;; n. BS GAAGTGTTATCACATAC; R14642; 9; 17;; p. BS ATGGGGTTGTGGCAGGG; R14643; -4; 17;; n. BS GTAATGTTTTTTCAGAC; R14644; 14; 17;; p. BS GAAAATTTGTTTCATAC; R14645; 2; 17;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00993 XX ID V$TAL1_Q6 XX DT 14.05.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA TAL1 XX BF T00790; Tal-1; Species: human, Homo sapiens. BF T01799; Tal-1; Species: mouse, Mus musculus. BF T01800; Tal-1; Species: chick, Gallus gallus. XX P0 A C G T 01 1 0 1 2 T 02 0 5 0 0 C 03 0 5 0 0 C 04 5 0 0 0 A 05 0 1 2 2 K 06 0 5 0 0 C 07 0 0 0 5 T 08 0 0 5 0 G 09 1 2 1 1 N 10 0 2 0 3 Y XX BA 5 compiled sequences XX BS NCCAGCTGGC; R00850; -1; 10;; p. BS GCCAGCTGCT; R04158; 17; 10;; n. BS TCCATCTGAT; R14467; 5; 10;; n. BS ACCATCTGCC; R14468; 7; 10;; p. BS TCCACCTGTT; R14484; 6; 10;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00997 XX ID V$DEC_Q1 XX DT 14.05.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA DEC XX BF T05848; BHLHB2; Species: rat, Rattus norvegicus. BF T05851; BHLHB3; Species: rat, Rattus norvegicus. BF T05838; DEC1; Species: human, Homo sapiens. BF T05839; DEC2; Species: human, Homo sapiens. BF T05845; DEC2; Species: mouse, Mus musculus. BF T02327; Stra13; Species: mouse, Mus musculus. XX P0 A C G T 01 1 2 2 0 S 02 0 3 1 1 C 03 0 3 1 1 C 04 0 5 0 0 C 05 5 0 0 0 A 06 2 2 0 1 M 07 0 1 4 0 G 08 0 0 0 5 T 09 0 0 5 0 G 10 4 1 0 0 A 11 3 0 1 1 A 12 0 1 3 1 G 13 1 1 2 1 N XX BA 5 compiled sequences XX BS CCGCACGTGAGCT; R14531; 5; 13;; p. BS CCCCAACTGAAGC; R14561; 5; 13;; p. BS AGCCAAGTGAATG; R14562; 4; 13;; n. BS GCTCATGTGATGA; R14563; 5; 13;; p. BS GTCCACGTGCAGG; R14604; 4; 13;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00998 XX ID V$PBX_Q3 XX DT 14.05.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA PBX XX BF T05898; Pbx; Species: human, Homo sapiens. BF T05896; Pbx1:HoxB1; Species: human, Homo sapiens. BF T05895; Pbx1:PKNOX1; Species: human, Homo sapiens. BF T01481; Pbx1a; Species: human, Homo sapiens. BF T03451; Pbx1a; Species: mouse, Mus musculus. BF T05904; Pbx1a:Hoxb7; Species: human, Homo sapiens. BF T05905; Pbx1a:Hoxb8; Species: human, Homo sapiens. BF T05901; Pbx1a:Hoxc6; Species: human, Homo sapiens. BF T05906; Pbx1a:IPF1; Species: human, Homo sapiens. BF T05910; Pbx1a:PKNOX1; Species: mouse, Mus musculus. BF T02088; Pbx1b; Species: mouse, Mus musculus. BF T02087; Pbx1b; Species: human, Homo sapiens. BF T05899; Pbx1b:PKNOX1; Species: human, Homo sapiens. BF T05911; Pbx1b:PKNOX1; Species: mouse, Mus musculus. BF T04123; Pbx2; Species: human, Homo sapiens. BF T04127; Pbx2; Species: mouse, Mus musculus. BF T05902; Pbx2:Hoxc6; Species: human, Homo sapiens. BF T05900; Pbx2:PKNOX1; Species: human, Homo sapiens. BF T05912; Pbx2:PKNOX1; Species: mouse, Mus musculus. BF T04124; Pbx3a; Species: human, Homo sapiens. BF T04125; Pbx3a; Species: mouse, Mus musculus. BF T05903; Pbx3a:Hoxc6; Species: human, Homo sapiens. BF T05913; Pbx3a:PKNOX1; Species: mouse, Mus musculus. BF T04126; Pbx3b; Species: mouse, Mus musculus. BF T04128; Pbx3b; Species: human, Homo sapiens. XX P0 A C G T 01 0 0 9 0 G 02 8 0 0 1 A 03 0 1 1 7 T 04 1 0 2 6 T 05 1 0 8 0 G 06 9 0 0 0 A 07 2 0 1 6 T 08 0 1 5 3 K 09 1 0 6 2 G 10 1 2 2 4 N 11 3 2 1 3 N 12 1 3 4 1 S XX BA 9 compiled sequences XX BS GTGGGAGGGTAC; R04429; 22; 12;; p. BS GACAGAAGGAAG; R08497; 12; 12;; p. BS GATGGATGGGCG; R09699; 6; 12;; p. BS GATTGATCGCCT; R12755; 20; 12;; p. BS GATTGATGGTAA; R14719; 20; 12;; n. BS GATTGATTTTTC; R14723; 20; 12;; p. BS GATTGATTTTGC; R14768; 8; 12;; p. BS GATTAATTACTG; R14769; 6; 12;; n. BS GATTGAAGGGTG; R14770; 22; 12;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M00999 XX ID V$AIRE_01 XX DT 31.05.2004 (created); vma. DT 06.06.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AIRE XX BF T05990; AIRE; Species: human, Homo sapiens. XX P0 A C G T 01 9 5 1 17 W 02 8 6 0 18 T 03 13 3 5 11 N 04 7 2 10 13 N 05 7 2 10 13 N 06 16 4 1 11 W 07 12 10 3 7 N 08 8 9 2 13 N 09 6 3 5 18 T 10 0 0 32 0 G 11 0 0 32 0 G 12 11 3 0 18 W 13 12 3 1 16 W 14 12 6 6 8 N 15 11 3 6 12 N 16 12 4 5 11 N 17 13 3 3 13 W 18 10 7 2 13 N 19 0 0 32 0 G 20 0 0 32 0 G 21 11 4 5 12 N 22 3 9 6 14 N 23 14 1 6 11 W 24 15 7 2 8 N 25 17 3 1 11 W 26 9 4 5 14 N XX BA 32 selected sequences XX BS CTTGGCACTGGTTATTTTGGCCAAAT; R15040; 1; 26;; p. BS TTAGTATATGGATTGCATGGCTCTTC; R15041; 1; 26;; p. BS ACTATAAATGGTTCTGTAGGGCTGAT; R15042; 1; 26;; p. BS CCTTAACCTGGTAACAAAGGGAAATT; R15043; 1; 26;; p. BS TTCATACCTGGCGAACATGGATATAG; R15044; 1; 26;; p. BS TTGTGCCTTGGTTAGATCGGCTAACG; R15045; 1; 26;; p. BS TTATTTCAAGGTAAAATGGGTGTCAA; R15046; 1; 26;; p. BS TTAAGATTTGGTAGTTTAGGCTTTTT; R15047; 1; 26;; p. BS TTGGATAAAGGATCAAACGGTGGCAC; R15048; 1; 26;; p. BS AATGCAACCGGATGCTGAGGATAAAG; R15049; 1; 26;; p. BS CTACTTGTTGGTAATTTTGGTTACTT; R15050; 1; 26;; p. BS ACTATAAATGGTTCTGTAGGACTGAT; R15051; 1; 26;; p. BS TCAGTGTTGGGATTTCATGGATTTTA; R15052; 1; 26;; p. BS TAGTGCCTTGGTTAGATCGGTGGACT; R15053; 1; 26;; p. BS ATTTTACCAGGTAGAATTGGATAAAT; R15054; 1; 26;; p. BS TAGTGCCTTGGTTAGATCGGTAAACT; R15055; 1; 26;; p. BS TAAAGATTTGGAATTTATGGTCGAAA; R15056; 1; 26;; p. BS ATTGATATCGGAAATGCTGGTTTATA; R15057; 1; 26;; p. BS TAAATTGTTGGTTTAATAGGACACTC; R15058; 1; 26;; p. BS GTCTAACCGGGCTGGTCCGGACATTA; R15059; 1; 26;; p. BS TTCTCAACTGGAACTAAAGGTCTTAT; R15060; 1; 26;; p. BS ATTGGTAAAGGATCAAGCGGTGGCAC; R15061; 1; 26;; p. BS CCATTAACTGGTAGCAACGGTAAATT; R15062; 1; 26;; p. BS ATTGATATCGGACCTGATGGTTTATT; R15063; 1; 26;; p. BS CAACATATGGGTATGTGAGGATTCAG; R15064; 1; 26;; p. BS TTTTGTGGGGGTTAATAAGGGCGAAT; R15065; 1; 26;; p. BS TCAGGATTGGGATTTCATGGATTTTA; R15066; 1; 26;; p. BS TTATTTCAAGGTAAAATGGGGGTCAA; R15067; 1; 26;; p. BS ATTTTACCAGGTAGAGTTGGATAAAT; R15068; 1; 26;; p. BS TTATATTGTGGCCAATAAGGGGAAAA; R15069; 1; 26;; p. BS TAGAGATTTGGATTTTATGGTCGAAA; R15070; 1; 26;; p. BS AAAGTAAATGGTCTATCTGGATATGG; R15071; 1; 26;; p. XX CC sequences were selected in a random oligonucleotide selection assay (from a library of oligonucleotides containing two guanine doublets N9-GG-N7-GG-N6) by binding to recombinant AIRE protein in 5 cycles of selection and amplification [1] XX RN [1]; RE0023681. RX PUBMED: 11533054. RA Kumar P. G., Laloraya M., Wang C. Y., Ruan Q. G., Davoodi-Semiromi A., Kao K. J., She J. X. RT The autoimmune regulator (AIRE) is a DNA-binding protein. RL J. Biol. Chem. 276:41357-41364 (2001). XX // AC M01000 XX ID V$AIRE_02 XX DT 31.05.2004 (created); vma. DT 06.06.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AIRE XX BF T05990; AIRE; Species: human, Homo sapiens. XX P0 A C G T 01 0 3 8 0 G 02 3 3 8 0 G 03 0 0 0 14 T 04 0 0 0 14 T 05 14 1 0 1 A 06 0 0 0 18 T 07 1 0 0 18 T 08 18 0 1 2 A 09 22 1 0 1 A 10 0 1 7 18 T 11 2 2 0 24 T 12 0 0 28 0 G 13 0 0 29 0 G 14 2 0 1 26 T 15 0 1 0 28 T 16 22 0 1 0 A 17 0 1 1 17 T 18 13 2 3 0 A 19 0 1 0 17 T 20 0 0 0 17 T 21 0 1 15 1 G 22 1 1 15 0 G 23 0 2 3 7 T 24 0 1 1 8 T 25 4 0 3 3 D XX BA 32 selected sequences XX BS GGTTATTA; R15072; 8; 25; 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32; p. BS GATTATTAAT; R15073; 5; 25; 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29; p. BS CGTTATTAAT; R15074; 7; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31; p. BS GGTTATTAATTGGTTA; R15075; 1; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25; p. BS GGTTATTAATTGGTTA; R15076; 1; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25; p. BS CATTATTAATTGGTT; R15077; 2; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25, 26; p. BS CATTATTAATTGGTT; R15078; 2; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25, 26; p. BS GCTTATTAATTGGTTA; R15079; 1; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25; p. BS CTTATTAATTGGTTAT; R15080; 1; 25; 1, 18, 19, 20, 21, 22, 23, 24, 25; p. BS GCTTATTAATTGGTT; R15081; 2; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25, 26; p. BS GGTTATTAATTGGTT; R15082; 2; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25, 26; p. BS GGTTATTAATTGGTT; R15083; 2; 25; 17, 18, 19, 20, 21, 22, 23, 24, 25, 26; p. BS GTTATTAAGTGGTT; R15084; 1; 25; 1, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25; p. BS GTTATTAAGTGGATA; R15085; 1; 25; 1, 17, 18, 19, 20, 21, 22, 23, 24, 25; p. BS TTATATTGGTTACGC; R15086; 1; 25; 1, 2, 3, 4, 20, 21, 22, 23, 24, 25; p. BS CTTAATTGGTTATATTGG; R15087; 1; 25; 1, 2, 3, 4, 23, 24, 25; p. BS TTAATTGGTTATATTGG; R15088; 1; 25; 1, 2, 3, 4, 5, 23, 24, 25; p. BS TAAGTGGTTATATTGGT; R15089; 1; 25; 1, 2, 3, 4, 5, 6, 24, 25; p. BS ATTGGGTATATTGGTTA; R15090; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8; p. BS ATTGGTTATATTGGTTG; R15091; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8; p. BS TGGTTATATTGGTTG; R15092; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10; p. BS TGGTTATATTGGTTA; R15093; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10; p. BS ATTGGTTATATTGGGTA; R15094; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8; p. BS GTGGTTATATTGGGTA; R15095; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8, 9; p. BS ATGCGGTTATCTTGG; R15096; 1; 25; 1, 2, 3, 4, 5, 6, 7, 23, 24, 25; p. BS TTGCGAGGTTATATTGG; R15097; 1; 25; 1, 2, 3, 4, 5, 23, 24, 25; p. BS TAGCGGATATGTTGG; R15098; 1; 25; 1, 2, 3, 4, 5, 6, 7, 23, 24, 25; p. BS ACAGGTTATATTGGC; R15099; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8, 24, 25; p. BS TGGTTATATTGGCCT; R15100; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10; p. BS TTGGTCGGGTTCGTGT; R15101; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8, 9; p. BS GTTATCTTTAGTG; R15102; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12; p. BS TGGTTATATTGCTTT; R15103; 1; 25; 1, 2, 3, 4, 5, 6, 7, 8, 9, 10; p. XX CC sequences were selected in a random oligonucleotide selection assay (from a library of oligonucleotides containing 26 randomized nucleotides N26) by binding to recombinant AIRE protein in 5 cycles of selection and amplification [1] XX RN [1]; RE0023681. RX PUBMED: 11533054. RA Kumar P. G., Laloraya M., Wang C. Y., Ruan Q. G., Davoodi-Semiromi A., Kao K. J., She J. X. RT The autoimmune regulator (AIRE) is a DNA-binding protein. RL J. Biol. Chem. 276:41357-41364 (2001). XX // AC M01001 XX ID V$DEAF1_01 XX DT 31.05.2004 (created); vma. DT 06.06.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA DEAF1 XX BF T05885; DEAF-1; Species: chimpanzee, Pan troglodytes. XX P0 A C G T 01 4 7 4 1 N 02 0 13 3 2 C 03 4 2 10 2 G 04 1 9 4 4 N 05 4 9 4 3 N 06 2 10 1 9 Y 07 0 5 2 16 T 08 2 16 1 3 C 09 2 2 19 0 G 10 2 2 15 4 G 11 1 3 17 2 G 12 5 1 7 10 N 13 10 0 10 3 R 14 1 5 2 15 T 15 2 3 0 18 T 16 0 4 1 18 T 17 1 22 0 0 C 18 0 22 1 0 C 19 0 0 19 1 G 20 5 0 8 6 D 21 10 3 4 2 A 22 7 1 8 3 R 23 4 3 5 5 N 24 5 4 3 4 N 25 2 4 7 3 N XX BA 23 selected sequences XX BS CTAGCATCGGGAGTTTCC; R14995; 13; 25; 31, 32, 33, 34, 35, 36, 37; p. BS CCGGGTTCGGGAATTTCC; R14997; 13; 25; 31, 32, 33, 34, 35, 36, 37; p. BS ACGTCATCGGGTGTTTCC; R14998; 13; 25; 31, 32, 33, 34, 35, 36, 37; p. BS GGGCCCCTGGGTGTTTCCGTCAAGT; R14999; 6; 25;; p. BS ACCCCCTTGGGTGTTTCCGTAAG; R15000; 8; 25; 31, 32; p. BS CACACTCGTGGATTTCCGGGGATG; R15001; 1; 25; 1; p. BS GCGCACTCGTGTTTTTCCGGAGGGC; R15002; 1; 25;; p. BS GCTCACTCGGGGATCTCCGTAACCC; R15003; 3; 25;; p. BS TCGGCTGTTTCCGGAAACG; R15004; 1; 25; 1, 2, 3, 4, 5, 6; p. BS CCTCGGGTGTTTCCGGAGAAG; R15005; 1; 25; 1, 2, 3, 4; p. BS TTCGTGGATTTCCGTGAGTC; R15006; 1; 25; 1, 2, 3, 4, 5; p. BS TTCGCGGAGTTCGGACATCG; R15007; 1; 25; 1, 2, 3, 4, 5; p. BS GTTCCCCGAGGGTTTCCGATGTTT; R15008; 1; 25; 1; p. BS ACGCTTCGGAGTTTTTCCGATGTAA; R15009; 1; 25;; p. BS CTCNGGGGATTTCCGGAGGAT; R15010; 1; 25; 1, 2, 3, 4; p. BS GGGGATTCGGGTTCTTCCGGAAGTG; R15011; 2; 25;; p. BS CTGGGTTCGGTAGGTTCCGGATTGG; R15012; 1; 25;; p. BS ACGCGTTCGGCTATTTCCGTGCTAG; R15013; 2; 25;; p. BS CCATTCGCCGACACTCCCGAGT; R15014; 9; 25; 31, 32, 33; p. BS CCAATTTTCCGAACACCCGAATCCA; R15015; 5; 25;; p. BS CCCCCCGAATGGAACCCCG; R15016; 12; 25; 31, 32, 33, 34, 35, 36; p. BS CCGCCGTAAGTTGCCGCCGGAG; R15017; 9; 25; 31, 32, 33; p. BS TCGTGCCCGGCAGCACACTTCGCAC; R15018; 3; 25;; p. XX CC sequences were selected in a random oligonucleotide selection assay (from a pool of ds 70mers containing 30 random nucleotides) by binding to immobilized DEAF-1 in 6 cycles of selection and amplification [1] XX RN [1]; RE0023680. RX PUBMED: 9773984. RA Huggenvik J. I., Michelson R. J., Collard M. W., Ziemba A. J., Gurley P., Mowen K. A. RT Characterization of a nuclear deformed epidermal autoregulatory factor-1 (DEAF-1)-related (NUDR) transcriptional regulator protein. RL Mol. Endocrinol. 12:1619-1639 (1998). XX // AC M01002 XX ID V$DEAF1_02 XX DT 31.05.2004 (created); vma. DT 06.06.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA DEAF1 XX BF T05885; DEAF-1; Species: chimpanzee, Pan troglodytes. XX P0 A C G T 01 4 2 6 1 R 02 4 6 3 2 N 03 5 2 5 3 N 04 4 3 6 3 N 05 8 3 8 1 R 06 3 5 0 13 T 07 1 0 1 19 T 08 0 21 0 0 C 09 0 1 20 0 G 10 1 0 19 1 G 11 2 2 13 4 G 12 7 3 3 8 N 13 10 3 6 2 R 14 2 1 2 16 T 15 0 6 0 15 T 16 1 0 2 17 T 17 0 15 0 6 C 18 0 17 0 4 C 19 0 4 13 0 G 20 2 1 11 3 G 21 5 2 8 2 R 22 8 1 7 0 R 23 3 2 4 7 N 24 1 1 8 4 K 25 3 4 2 5 N XX BA 21 selected sequences XX BS CAGCACTCGGGTATTTCCGCCAGTG; R15019; 5; 25;; p. BS GAACACTCGGGTGTTTCCGTGAG; R15020; 8; 25; 31, 32; p. BS GTGAGTTCGGCAGTTTCC; R15021; 13; 25; 31, 32, 33, 34, 35, 36, 37; p. BS GGGGACTCGGGTGTTTCC; R15022; 13; 25; 31, 32, 33, 34, 35, 36, 37; p. BS ACGTCATCGGGTGTTTCC; R15023; 13; 25; 31, 32, 33, 34, 35, 36, 37; p. BS ACATGTTCGGGACTTTCC; R15024; 13; 25; 31, 32, 33, 34, 35, 36, 37; p. BS CGGATTCGTGCATTTCCGGAGGGG; R15025; 1; 25; 1; p. BS CTACTTCGGGCGTTTCCGGAGTTT; R15026; 1; 25; 1; p. BS GCCCATTCGGGTATTTCCGGCGCGT; R15027; 6; 25;; p. BS AAAGACACGACCGTTTCCGGAATCA; R15028; 6; 25;; p. BS GCAGAATCGGAGTTTTCCGAA; R15029; 10; 25; 31, 32, 33, 34; p. BS CTTTCCTCGGTAATTTCCGGACT; R15030; 8; 25; 31, 32; p. BS TGTGGTTCGGGTATTTTCGTGACGA; R15031; 1; 25;; p. BS AGAGGTTCGGGGATTTCCGTGATGT; R15032; 6; 25;; p. BS TTCGGTTACTTCCGATAAAA; R15033; 1; 25; 1, 2, 3, 4, 5; p. BS GTTCGGTAAACTTCGGGGTGC; R15034; 1; 25; 1, 2, 3, 4; p. BS GTTCGGTAAACTTCGGGGTGC; R15035; 1; 25; 1, 2, 3, 4; p. BS TTTCGGGACGCGCTCGGGATT; R15036; 1; 25; 1, 2, 3, 4; p. BS GACAATTCGGGGATC TTCGGAGGT; R15037; 1; 25; 16; p. BS AGTTCGGGTTTCGTTCGGAAGC; R15038; 1; 25; 1, 2, 3; p. BS GAGCCGAACGCATTCGTGTTC; R15039; 1; 25; 1, 2, 3, 4; p. XX CC sequences were selected in a random oligonucleotide selection assay (from a pool of ds 70mers containing 30 random nucleotides) by binding to immobilized DEAF-1 in 6 cycles of selection and amplification plus a final round of selection using EMSA [1] XX RN [1]; RE0023680. RX PUBMED: 9773984. RA Huggenvik J. I., Michelson R. J., Collard M. W., Ziemba A. J., Gurley P., Mowen K. A. RT Characterization of a nuclear deformed epidermal autoregulatory factor-1 (DEAF-1)-related (NUDR) transcriptional regulator protein. RL Mol. Endocrinol. 12:1619-1639 (1998). XX // AC M01003 XX ID V$HELIOSA_01 XX DT 09.06.2004 (created); elf. DT 26.09.2005 (updated); elf. CO Copyright (C), Biobase GmbH. XX NA Helios A XX BF T06012; HELIOS; Species: mouse, Mus musculus. XX P0 A C G T 01 5 6 1 7 N 02 7 2 4 6 N 03 5 2 1 11 T 04 10 3 1 5 W 05 0 0 19 0 G 06 0 0 19 0 G 07 0 0 19 0 G 08 17 1 0 1 A 09 5 2 3 9 N 10 9 2 3 5 N 11 7 3 4 5 N XX BA 19 selected sequences XX CC sequences were selected in a random oligonucleotide selection assay (from a pool of oligonucleotides containing 18 random nucleotides) by binding to GST-HeliosA fusion protein in four rounds of selection and amplification [1] XX RN [1]; RE0024294. RX PUBMED: 9512513. RA Hahm K., Cobb B. S., McCarty A. S., Brown K. E., Klug C. A., Lee R., Akashi K., Weissman I. L., Fisher A. G., Smale S. T. RT Helios, a T cell-restricted Ikaros family member that quantitatively associates with Ikaros at centromeric heterochromatin. RL Genes Dev. 12:782-796 (1998). XX // AC M01004 XX ID V$HELIOSA_02 XX DT 10.06.2004 (created); elf. DT 10.06.2004 (updated); elf. CO Copyright (C), Biobase GmbH. XX NA Helios A XX BF T06012; HELIOS; Species: mouse, Mus musculus. XX P0 A C G T 01 6 1 1 6 W 02 4 3 1 6 N 03 7 1 1 5 W 04 10 0 0 4 A 05 0 0 30 0 G 06 0 0 30 0 G 07 28 0 0 2 A 08 22 2 1 5 A 09 24 3 0 3 A 10 26 1 1 2 A 11 12 8 3 7 N XX BA 30 selected sequence XX CC sequences were selected in a random oligonucleotide selection assay (from a pool of oligonucleotides containing 18 random nucleotides) by binding to GST-HeliosA fusion protein in four rounds of selection and amplification [1] XX RN [1]; RE0024294. RX PUBMED: 9512513. RA Hahm K., Cobb B. S., McCarty A. S., Brown K. E., Klug C. A., Lee R., Akashi K., Weissman I. L., Fisher A. G., Smale S. T. RT Helios, a T cell-restricted Ikaros family member that quantitatively associates with Ikaros at centromeric heterochromatin. RL Genes Dev. 12:782-796 (1998). XX // AC M01005 XX ID F$STE11_02 XX DT 17.06.2004 (created); elf. DT 17.06.2004 (updated); elf. CO Copyright (C), Biobase GmbH. XX NA ste11 XX BF T01422; ste11; Species: fission yeast, Schizosaccharomyces pombe. XX P0 A C G T 01 7 1 0 1 A 02 4 1 29 2 G 03 34 0 6 0 A 04 40 0 0 0 A 05 0 40 0 0 C 06 40 0 0 0 A 07 39 0 0 1 A 08 40 0 0 0 A 09 0 0 40 0 G 10 39 0 1 0 A 11 40 0 0 0 A 12 34 2 0 4 A XX BA 40 selected sequences XX BS GAACAAAGAAA; R15142; 1; 12; 1; p. BS GAACAAAGGAA; R15143; 1; 12; 1; p. BS AACAAAGAAA; R15144; 1; 12; 1, 2; p. BS AGAACAAAGAAA; R15145; 3; 12;; p. BS AGACAAAGAAA; R15146; 1; 12; 1; p. BS GAACAAAGAAA; R15147; 1; 12; 1; p. BS TAACAAAGAAA; R15148; 1; 12; 1; p. BS GAACAAAGAAA; R15149; 1; 12; 1; p. BS GAACAAAGAAA; R15150; 1; 12; 1; p. BS GGACAAAGAAA; R15151; 1; 12; 1; p. BS AACATAGAAA; R15152; 1; 12; 1, 2; p. BS CAAACAAAGAAA; R15153; 4; 12;; p. BS GAACAAAGAAC; R15154; 1; 12; 1; p. BS GAACAAAGAAA; R15155; 1; 12; 1; p. BS GAACAAAGAAA; R15156; 1; 12; 1; p. BS AGAACAAAGAAA; R15157; 4; 12;; p. BS GAACAAAGAAA; R15158; 1; 12; 1; p. BS GACAAAGAAA; R15159; 1; 12; 1, 2; p. BS GAACAAAGAAA; R15160; 1; 12; 1; p. BS AGACAAAGAAA; R15161; 1; 12; 1; p. BS GAACAAAGAAT; R15162; 1; 12; 1; p. BS TAACAAAGAAA; R15163; 1; 12; 1; p. BS GAACAAAGAAA; R15164; 1; 12; 1; p. BS AGAACAAAGAAT; R15165; 3; 12;; p. BS AGAACAAAGAAA; R15166; 3; 12;; p. BS GAACAAAGAAC; R15167; 1; 12; 1; p. BS GAACAAAGAAA; R15168; 1; 12; 1; p. BS GAACAAAGAAA; R15169; 1; 12; 1; p. BS GACAAAGAAA; R15170; 1; 12; 1, 2; p. BS GAACAAAGAAA; R15171; 1; 12; 1; p. BS GAACAAAGAAT; R15172; 1; 12; 1; p. BS CAACAAAGAAA; R15173; 1; 12; 1; p. BS TAGACAAAGAAA; R15174; 3; 12;; p. BS GAACAAAGAAA; R15175; 1; 12; 1; p. BS AGAACAAAGAAA; R15176; 4; 12;; p. BS GAACAAAGAAT; R15177; 1; 12; 1; p. BS GAACAAAGAAA; R15178; 1; 12; 1; p. BS GAACAAAGAAA; R15179; 1; 12; 1; p. BS AGAACAAAGAAA; R15180; 3; 12;; p. BS AGAACAAAGAAA; R15181; 3; 12;; p. XX CC sequences were selected by recombinant Ste-11 from a pool of random oligonucleotides (18 random base pairs) in five rounds of selection and amplification [1] XX RN [1]; RE0024380. RX PUBMED: 10867006. RA van Beest M., Dooijes D., van de Wetering M., Kjaerulff S., Bonvin A., Nielsen O., Clevers H. RT Sequence-specific high mobility group box factors recognize 10-12-base pair minor groove motifs. RL J. Biol. Chem. 275:27266-27273 (2000). XX // AC M01006 XX ID P$AGP1_01 XX DT 22.07.2004 (created); rhe_cga. DT 22.07.2004 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AGP1 XX DE AG-motif binding protein 1 XX BF T06043; AGP1; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 5 5 1 8 N 02 2 10 3 4 C 03 19 0 0 0 A 04 0 0 19 0 G 05 19 0 0 0 A 06 0 0 0 19 T 07 0 19 0 0 C 08 0 4 0 15 T 09 14 0 3 2 A 10 4 5 5 5 N XX BA 19 selected binding sequences XX BS TCAGATCTAA; R15326; 1; 10;; p. BS ACAGATCTAG; R15327; 19; 10;; p. BS ACAGATCTAG; R15328; 7; 10;; p. BS TTAGATCTAG; R15329; 19; 10;; p. BS CAAGATCTAA; R15330; 9; 10;; p. BS CGAGATCTGA; R15331; 18; 10;; p. BS TGAGATCTTC; R15332; 12; 10;; p. BS CGAGATCTAC; R15333; 14; 10;; p. BS GTAGATCTAT; R15334; 23; 10;; p. BS ATAGATCTAT; R15335; 13; 10;; p. BS ACAGATCTAT; R15336; 9; 10;; p. BS CAAGATCTAC; R15337; 2; 10;; p. BS TCAGATCTGT; R15338; 18; 10;; p. BS TCAGATCTAT; R15339; 17; 10;; p. BS TCAGATCTAC; R15340; 1; 10;; p. BS TCAGATCCTG; R15341; 23; 10;; p. BS CTAGATCCGG; R15342; 24; 10;; p. BS TCAGATCCAC; R15343; 1; 10;; p. BS ACAGATCCAA; R15344; 20; 10;; p. XX CC five rounds and additional two rounds of selection with in vitro translated protein from a pool of 28-mer oligonucleotides [1] XX RN [1]; RE0024482. RX PUBMED: 14617085. RA Sugimoto K., Takeda S., Hirochika H. RT Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2. RL Plant J. 36:550-564 (2003). XX // AC M01007 XX ID V$SRF_Q5_02 XX DT 27.08.2004 (created); dtc. DT 30.08.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA SRF XX BF T00672; SRF; Species: human, Homo sapiens. BF T00764; SRF; Species: human, Homo sapiens. BF T00761; SRF; Species: chick, Gallus gallus. BF T00762; SRF; Species: cat, Felis silvestris catus. BF T00766; SRF; Species: rat, Rattus norvegicus. BF T03690; SRF; Species: zebra fish, Brachydanio rerio. BF T05114; SRF; Species: mouse, Mus musculus. BF T00763; SRF; Species: clawed frog, Xenopus laevis. BF T03997; SRF (263 AA); Species: mouse, Mus musculus. BF T03996; SRF (400 AA); Species: mouse, Mus musculus. BF T03995; SRF (440 AA); Species: mouse, Mus musculus. BF T00765; SRF (504 AA); Species: mouse, Mus musculus. XX P0 A C G T 01 7 29 11 7 C 02 22 15 6 11 N 03 4 6 19 25 K 04 9 18 16 11 N 05 4 9 15 26 K 06 0 52 0 2 C 07 0 52 0 2 C 08 12 5 0 37 T 09 3 0 0 51 T 10 35 2 4 13 A 11 0 1 1 52 T 12 31 1 1 21 W 13 5 2 2 45 T 14 8 0 46 0 G 15 1 0 53 0 G 16 8 19 12 15 N 17 13 21 9 11 N 18 21 9 11 13 N 19 5 9 18 22 N XX BA 54 compiled sequences including 3 TRANSCompel sites XX BS CCTTGCCTTATTTGGTCCC; R00024; -4; 19;; n. BS CCTTGCCTTATTTGGTCCC; R00026; -4; 19;; n. BS CCTTGCCTTATTTGGTCCC; R00027; -4; 19;; n. BS TCGAGCCATATTTGGGTGT; R00036; 1; 19;; n. BS CATGTCCTTATATGGACTC; R00038; -5; 19;; p. BS GGAATCCCTATTTGGCCAT; R00048; -5; 19;; p. BS TTAGCCCATGTATGGAAAG; R00049; -4; 19;; n. BS CCTGCCCTTATTTGGTAGC; R00050; -4; 19;; n. BS GATGCCCATATTTGGCGAT; R00051; 3; 19;; p. BS CAGCCCCCTCTCCAGATTA; R00142; -6; 19;; p. BS CAGCTCCCTATTTGGCCAT; R01757; -5; 19;; p. BS CCCTTCCTTACATGGTCTG; R01759; -5; 19;; p. BS CATGGCCATATATGGGAAG; R01795; 3; 19;; n. BS CAGCGCCTTATATGGAGTG; R01796; 2; 19;; p. BS CTGCTCCTTATATGGCGTT; R01797; 3; 19;; n. BS CATATCCTTTTATGGCCCT; R02907; -5; 19;; p. BS TATTTCCATATTTGGGTAT; R03375; 1; 19;; n. BS AGCAGCCATATGTGGACAG; R03412; 2; 19;; p. BS ACGCTCCTTATACGGCCCG; R03495; 1; 19;; p. BS GAGCGCCTTCTTTGGGCAG; R03496; 1; 19;; p. BS GAGCTCCTTATATGGCTAA; R08490; -5; 19;; p. BS CCGCTCCTTATATGGCGAG; R09533; -4; 19;; n. BS TGTTTCCTTTTATGGCGAG; R09534; -4; 19;; n. BS TATCTCTTTATATGGGGGG; R09535; -8; 19;; p. BS CCGCGCCTTATAAGGCGGC; R09538; 5; 19;; p. BS AAAAACCTTTTATGGGCAG; R09541; 1; 19;; n. BS GAGGTCCCTATATGGTTGT; R09597; 1; 19;; p. BS CTGCTCCTTATATGGCGTT; R09704; 3; 19;; n. BS CTGCTTCTTATATGGCATT; R09707; 9; 19;; n. BS TCTGCCCATATATGGGCCT; R13375; 2; 19;; p. BS CTGCTCCTTATATGGCATT; R14637; 6; 19;; n. BS ACCCACCTTATATGGTAAT; R14706; 20; 19;; p. BS CCTGGCCTTTTTGGGTTGT; R14816; 4; 19;; p. BS CGGGACCATATTTAGTCAG; R14817; 8; 19;; p. BS AAGACCCAAGTTTGGCTTG; R14834; 5; 19;; p. BS GATTGCCTTAGTTGGGATG; R14835; 5; 19;; p. BS CATTTCCTAATTAGGTAAA; R14840; 2; 19;; n. BS TTGCTCCTTGTTTGGGAAG; R14841; 1; 19;; p. BS AGTTGCTTTATATAAACTA; R14842; 9; 19;; p. BS CAGATCCATGTATGGAAGC; R14851; 9; 19;; p. BS CTCTTCCTTTTATAGTCAG; R14859; 2; 19;; p. BS GAGATCCTTATTTGGTCAA; R14866; 3; 19;; p. BS GCTCTCCATTTATAGCACC; R14868; 9; 19;; p. BS CTTAGCCTATTTAGGGTCT; R14871; 9; 19;; p. BS AAACACCTTATATGGCCAT; R14873; 6; 19;; p. BS GATGCCCCTTTAAGGTCTG; R14881; 2; 19;; p. BS CCTGGCCTTTTTGGGTTGT; R14882; 4; 19;; p. BS GACTTCCTTTTATGGCCTG; R14883; 7; 19;; p. BS GATGCCCTTTTAAAGTTAT; R14955; 14; 19;; n. BS CCCGCCCTTATTTGGAGCC; R14956; -1; 19;; p. BS CTTGTCCTTTTATAGCAGT; R14969; 2; 19;; p. BS CGTCGCCATATTTGGGTGT; C00008, s00012; -4; 19;; n. BS CTTGTCCTTTTATAGCAGT; s00080; 9; 19;; p. BS CTTGTTCTTATATGGGCAT; C00127, s00190; -5; 19;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M01009 XX ID V$HES1_Q2 XX DT 27.08.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA HES1 XX BF T01648; HES-1; Species: rat, Rattus norvegicus. BF T01649; HES-1; Species: mouse, Mus musculus. BF T04892; HES-1; Species: human, Homo sapiens. XX P0 A C G T 01 4 1 2 1 A 02 3 2 2 1 N 03 1 3 4 0 S 04 0 3 3 2 B 05 1 7 0 0 C 06 0 0 3 5 K 07 0 4 1 3 Y 08 0 0 8 0 G 09 0 0 0 8 T 10 0 0 8 0 G 11 0 3 4 1 S 12 1 4 2 1 C 13 1 3 1 3 N 14 3 3 1 1 N 15 2 1 4 1 G XX BA 8 compiled sequences XX BS TTGCCTGGTGGGCAG; R02601; 7; 15;; n. BS AGACCTTGTGCCTAG; R04468; -4; 15;; p. BS ACCGCTCGTGGACTG; R04469; -5; 15;; n. BS ACGGCTCGTGTGAAA; R04470; -5; 15;; n. BS GGCTCGCGTGGCGCG; R15364; 7; 15;; p. BS CAGGAGCGTGCCTGC; R15366; 6; 15;; n. BS AAGTCGTGTGCCCCT; R15367; 13; 15;; n. BS GACCCTTGTGGTTCA; R15377; 7; 15;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M01010 XX ID V$HMGIY_Q3 XX DT 27.08.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA HMGIY XX BF T01851; HMG I; Species: human, Homo sapiens. BF T02368; HMG I; Species: human, Homo sapiens. BF T01980; HMG-Y; Species: human, Homo sapiens. BF T01852; HMG-Y; Species: mouse, Mus musculus. BF T01859; HMGI-C; Species: human, Homo sapiens. BF T01860; HMGI-C; Species: mouse, Mus musculus. XX P0 A C G T 01 11 6 2 6 N 02 7 7 6 5 N 03 4 1 7 13 K 04 2 1 14 8 K 05 3 10 8 4 N 06 18 2 1 4 A 07 14 0 3 8 W 08 7 0 1 17 T 09 0 2 0 23 T 10 4 0 1 20 T 11 3 8 4 10 N 12 3 9 1 12 Y 13 3 7 0 15 T 14 5 4 9 7 N 15 10 2 5 8 N XX BA 25 compiled sequences including 8 TRANSCompel sites XX BS CCGGGAATTTCCCTG; R04931; 18; 15;; p. BS AATAAAATTTTCCAA; R05081; 12; 15;; p. BS GTGGGAAATTCCTCT; R13016; 10; 15;; p. BS TAGTCATTTTCCTGT; R14456; 10; 15;; p. BS ACTTTAATCTTTTGG; R14461; 3; 15;; p. BS CGCGCCAATTGTTCA; R14462; 13; 15;; n. BS ACAACAATTGCTTGC; R14463; -1; 15;; p. BS AAAGCAGTTTTATTA; R14464; 1; 15;; n. BS TATGCAATTAGCTTA; R14465; -5; 15;; n. BS AGTGGATATAGTTAT; R14466; -5; 15;; n. BS CTTTCAGTTTTCCTA; R14731; 11; 15;; n. BS TATTCATTTTATTCA; R14740; -1; 15;; n. BS GCTTCTAATATTCAT; R14743; 8; 15;; n. BS ACGGAAGTTTAAAGA; R14765; 1; 15;; n. BS ACTTCCTATATTTGA; R14809; 5; 15;; p. BS AAACTATATTGTCAT; R14810; 6; 15;; p. BS AAGTGTTTTTTTTTT; R14811; 14; 15;; n. BS CGTGGATATTCCCGG; C00056, s00086; -5; 15;; p. BS CGGGAAAGTTTTTGG; C00058, s00090; -4; 15;; p. BS TTGGGGATTTCCTCT; C00059, s00092; -6; 15;; p. BS ATTGTAATTTTAAGC; C00093, s00141; -7; 15;; p. BS CCTTTTTTTTATATA; C00146, s00228; 2; 15;; n. BS AGAGCTATTTTGCAT; C00329, s00574; 1; 15;; n. BS TGTGGAATCTCCTGG; C00344, s00601; -7; 15;; n. BS TTTGGAATTTCTTTA; C00345, s00602; -5; 15;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M01011 XX ID V$HNF1_Q6_01 XX DT 27.08.2004 (created); dtc. DT 30.08.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF1 XX BF T01211; HNF-1alpha; Species: mouse, Mus musculus. BF T00369; HNF-1alpha; Species: rat, Rattus norvegicus. BF T00368; HNF-1alpha-A; Species: human, Homo sapiens. BF T01950; HNF-1alpha-B; Species: human, Homo sapiens. BF T01951; HNF-1alpha-C; Species: human, Homo sapiens. BF T00889; HNF-1beta; Species: rat, Rattus norvegicus. BF T00890; HNF-1beta; Species: mouse, Mus musculus. BF T01955; HNF-1beta; Species: domestic pig, Sus scrofa. BF T00891; HNF-1beta-A; Species: human, Homo sapiens. BF T01953; HNF-1beta-B; Species: human, Homo sapiens. BF T01954; HNF-1beta-C; Species: human, Homo sapiens. XX P0 A C G T 01 17 11 6 14 N 02 12 9 15 12 N 03 10 19 8 12 N 04 23 5 10 12 N 05 12 3 31 4 G 06 9 10 7 24 N 07 8 8 3 31 T 08 43 0 6 1 A 09 37 6 1 7 A 10 16 6 6 23 W 11 20 8 7 16 N 12 43 0 1 7 A 13 3 3 8 37 T 14 11 3 3 34 T 15 44 2 1 3 A 16 46 1 2 1 A 17 5 34 7 4 C 18 9 24 3 14 Y 19 17 10 5 17 N 20 11 8 14 15 N 21 16 8 12 11 N XX BA 51 compiled sequences including 13 TRANSCompel sites XX BS AGTAATTACTAACCAAACTAA; R00077; -6; 21;; n. BS AATTGTAGATTATTAACTAGA; R00081; 1; 21;; n. BS AACTGTAGATCATTAACCATA; R00091; 3; 21;; n. BS TGCTGGTGAATATTAACCAAG; R00118; -2; 21;; n. BS NNTTTGTAATAAATAACTCAN; R00237; -2; 21;; p. BS GTCTGTTAACTAGTAACCTTC; R00432; 1; 21;; n. BS AAGGGTGATGATTAACCTAGT; R00436; -10; 21;; p. BS GTCAAATATTAACTAAAGGGA; R00438; -7; 21;; p. BS CAACTCAAATAAATTACACCA; R01625; -1; 21;; n. BS TGGAAGTAATGATTAACTACA; R01807; -2; 21;; n. BS TTGAAGTAATGATTAACTGCA; R01913; -4; 21;; n. BS TGCAGCTAATAATAAACCAGT; R02780; 12; 21;; p. BS CGCTGCCAATCATTAACCTCC; R02910; 6; 21;; p. BS TCTCATTACACATTAACTCAA; R03253; 3; 21;; p. BS TTCTGATATCTATTTAACTGA; R03260; -4; 21;; p. BS CGGCCTCAACCAGCCATATTG; R03302; -1; 21;; n. BS TGTAGGCTAGAGTAGACAAGT; R03305; -3; 21;; p. BS ACTGGGCAAAAATTAACCAGG; R03485; 1; 21;; n. BS GCCTGTTAACTAGTAACCTTC; R04019; 17; 21;; n. BS GAGGGACAAAGAGCAGGAACA; R04123; 2; 21;; n. BS TACAATTACTAATTAACTTAG; R04237; -2; 21;; p. BS AGCAGAAGATTATTAAACACT; R04238; -5; 21;; p. BS ACTAGTCACTGATAAACAGGA; R04254; -4; 21;; n. BS TTTAGAGAAGAATTAACCTTT; R04474; 5; 21;; p. BS NNNNNNNNAGGACAAAGCCAA; R08083; -8; 21;; p. BS CACGGATAAATATGAACCTTG; R08491; 1; 21;; p. BS TTAGTTTAAATATTAAGTTAA; R12423; -4; 21;; n. BS CACAGCTAATAATAAACCAGG; R12711; 17; 21;; p. BS CACAGCTAATAATAAACCAGG; R12712; 17; 21;; p. BS GAGTATTAATTATTAACAATG; R13038; -3; 21;; n. BS ACCGATTAACCATTAACCCCC; R13051; -1; 21;; p. BS ATACGTTAAAGAGTAACCAGT; R13053; -4; 21;; n. BS ACCCACCACTAATGCGTGCCC; R13269; 1; 21;; p. BS TTGAGTTATGTATAATGTGAG; R14649; 2; 21;; p. BS ATTGACCAGGAATTNNNNNNN; R14713; -7; 21;; n. BS AGCAGTTATATTTTAACTTGA; R14722; 1; 21;; p. BS AGAAGTTAAAATGTAACCCTT; R14761; -4; 21;; n. BS AGAAGTTAAAATGTAACCCTT; R14764; 5; 21;; n. BS CACGGATAAATATGAACCTTG; C00041, s00062; 1; 21;; p. BS ACAAATTATCTATTAACCTGC; C00042, s00064; -4; 21;; p. BS AGTTTGTAATAAATAACTCAC; C00045, s00066; -3; 21;; p. BS GTTGGAAAATTATTTACATAG; C00045, s00067; -2; 21;; p. BS TGAACCAAAAATTAAATATTA; C00051, s00078; -10; 21;; p. BS TGAACCAAAAATTAAATATTA; C00095, s00078; -10; 21;; p. BS AAAGGAGAATAAGTAACCTAC; C00066, s00101; -4; 21;; n. BS CCCAGTTACATATTAAGTGTT; C00280, s00479; 3; 21;; p. BS TGGTGCTGATCATTAACCAGG; C00281, s00482; -3; 21;; p. BS CCCAGTTAAATATTAAGTCTT; C00282, s00484; -3; 21;; p. BS NNNAGTTAATCATAAAACANN; C00286, s00493; -2; 21;; n. BS CTTTGTAGAAGTTTAACTNNN; C00286, s00494; 2; 21;; p. BS CTAAATTATTCATTAAGGATT; C00303, s00531; -4; 21;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M01012 XX ID V$HNF3_Q6_01 XX DT 27.08.2004 (created); dtc. DT 30.08.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF3 XX BF T01104; HNF-3; Species: human, Homo sapiens. BF T02277; HNF-3; Species: clawed frog, Xenopus laevis. BF T00370; HNF-3; Species: mouse, Mus musculus. BF T03260; HNF-3; Species: atlantic salmon, Salmo salar. BF T02512; HNF-3alpha; Species: human, Homo sapiens. BF T02343; HNF-3alpha; Species: mouse, Mus musculus. BF T00371; HNF-3alpha; Species: rat, Rattus norvegicus. BF T01053; HNF-3beta; Species: clawed frog, Xenopus laevis. BF T02513; HNF-3beta; Species: human, Homo sapiens. BF T04889; HNF-3beta; Species: human, Homo sapiens. BF T03256; HNF-3beta; Species: chick, Gallus gallus. BF T01049; HNF-3beta; Species: rat, Rattus norvegicus. BF T02344; HNF-3beta; Species: mouse, Mus musculus. BF T02345; HNF-3gamma; Species: mouse, Mus musculus. BF T01050; HNF-3gamma; Species: rat, Rattus norvegicus. BF T02418; HNF-3gamma; Species: human, Homo sapiens. BF T00375; HNF3(-like); Species: rat, Rattus norvegicus. XX P0 A C G T 01 11 15 12 19 N 02 10 10 9 28 N 03 9 21 12 16 N 04 24 10 7 20 N 05 13 15 9 25 N 06 0 3 0 60 T 07 26 2 33 2 R 08 0 1 0 62 T 09 0 1 2 60 T 10 1 2 13 47 T 11 27 0 32 4 R 12 3 32 7 21 Y 13 9 13 5 35 T 14 6 21 4 31 Y 15 25 2 8 25 W 16 10 9 26 15 N 17 4 10 21 22 K 18 11 19 8 19 N XX BA 63 compiled sequences including 10 TRANSCompel sites XX BS NNNNNTATTGACTTAGNN; R00086; -5; 18;; p. BS CTTTTTATTTACTCTTGT; R00581; 5; 18;; n. BS CTGATTATTGACTTAGTC; R01464; -2; 18;; n. BS ATCATTATCGATCCTGGT; R01629; -5; 18;; p. BS TGTGGTGTTTTGACAACC; R02350; -2; 18;; p. BS TTTTATTTGTGGCCGCAT; R03140; -4; 18;; n. BS TCATCTGTTTGCAGACTG; R03144; 1; 18;; n. BS GGACTTGTTTGTTCTAGT; R03150; -2; 18;; n. BS GTTCATATTTGTGTAGGT; R03444; -5; 18;; p. BS CATTCTGTTTGTTTAGTA; R04321; 1; 18;; n. BS TGCCCTGTTTGTTTTAGT; R04324; -6; 18;; p. BS ACTTCTGTGTGCACATGC; R04488; -5; 18;; p. BS TTTATTATTTACCAGACC; R04489; -5; 18;; p. BS AAATATGTTTGCACAATG; R04490; -6; 18;; n. BS CTCAGTGTTTGTCTTTGC; R04656; 1; 18;; n. BS AATTCTGTTTGGCCAGCA; R05015; -1; 18;; n. BS GAGATTATTTGCTTATTG; R05018; 6; 18;; p. BS TGCACTATTTACTTAGTC; R05019; 5; 18;; n. BS CTCAATATTTGCTCTGGC; R05029; 11; 18;; p. BS AAGTTTGTTTTGCTTGTG; R05073; 2; 18;; n. BS ACAAATATTTGCTTGGCC; R05076; 3; 18;; n. BS TGCTCTGTTTACATTGGA; R05078; 3; 18;; n. BS AAAGGTGTTTACCTTGTC; R05084; 4; 18;; p. BS GCGTTTGTTTTAGCCCGG; R05085; 2; 18;; n. BS TCCATTGTTTGCACATGG; R05086; -1; 18;; n. BS TTTTTTGTTTGTTTGTTT; R05101; -3; 18;; p. BS TTGTTTGTTTGTTTTCCA; R05102; -3; 18;; n. BS GTTGTTGTTTGTTTTTTT; R05103; -3; 18;; p. BS CTTTTTATTTATTTTATT; R05104; -3; 18;; p. BS TGCGATGTTTGTTCTTTT; R05105; -3; 18;; p. BS NNGAATGTTTGTTCNNNN; R08080; -2; 18;; p. BS TTTACTGTTTGTCAATTC; R08890; 4; 18;; p. BS ACAAGTGTTTGCAGCATA; R08896; 6; 18;; p. BS GTCTTTATTGACTTTGGT; R08916; -2; 18;; n. BS GCCTCTATTGATTTATCT; R08917; -3; 18;; p. BS NNNAATACTGACTTTANN; R08918; -3; 18;; p. BS NNNAATATTGACTTTGNN; R08919; -3; 18;; p. BS CTCGGTATTGACTTTATA; R08920; -3; 18;; p. BS GGGAATATTTACTTATCC; R12969; 1; 18;; p. BS TGCATTATTTACTTGGGC; R12970; -1; 18;; n. BS CTCAGTGTTTGCCTTTGT; R12976; 2; 18;; n. BS CTGCTTGTTTTGGAGCCT; R13061; 5; 18;; p. BS TTAGTTGTTTGCTTTGGT; R13062; 5; 18;; p. BS CTCTCTGTTTGTTCTGGA; R13072; 1; 18;; p. BS TTTCTTCTTTATTGACTC; R13180; -5; 18;; n. BS GTCTGTATTTATAGATGT; R13181; 7; 18;; n. BS TCACCCATTTATCCAGGA; R13252; 6; 18;; p. BS ATTCTTGTTGAACCGCTA; R13253; 4; 18;; n. BS GCCACTTTTAATGCTGGG; R13254; 7; 18;; p. BS GAGTTTGTTGGGCAGGTA; R13255; 5; 18;; p. BS TACACCCTTCAATCTCAG; R14771; 18; 18;; n. BS CGCGCTGTTTGCTCTCTC; R15361; 4; 18;; n. BS TCCAGTGTTTGCTAAAAT; R15362; 9; 18;; n. BS AAACACGTTCGGAATGAT; C00064, s00097; -6; 18;; n. BS CTGATTATTGACTTAGTC; C00065, s00100; -2; 18;; n. BS CTGATTATTGACTTAGTC; C00066, s00100; -2; 18;; n. BS CTGATTATTGACTTAGTC; C00067, s00100; -2; 18;; n. BS GTTCATATTTGTGTAGGT; C00067, s00102; -5; 18;; p. BS CACTCTATTTGCCCAGCC; C00123, s00183; 5; 18;; p. BS TTTTTTGTTTATTTATCC; C00277, s00473; 6; 18;; p. BS NNNCTTATTTACTTNNNN; C00278, s00475; -4; 18;; n. BS ATCAGTGTTTGCTCTTGA; C00287, s00496; 7; 18;; p. BS NNNNATGTTTGCNNNNNN; C00289, s00500; -6; 18;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M01013 XX ID V$IPF1_Q4_01 XX DT 27.08.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA IPF1 XX BF T04362; IPF1; Species: human, Homo sapiens. BF T04267; IPF1; Species: golden (Syrian) hamster, Mesocricetus auratus. BF T02057; IPF1; Species: mouse, Mus musculus. BF T02058; IPF1; Species: rat, Rattus norvegicus. BF T06106; IPF1:Pbx; Species: human, Homo sapiens. XX P0 A C G T 01 3 3 1 8 T 02 1 6 7 2 S 03 3 2 7 4 N 04 3 4 9 0 G 05 2 5 0 9 Y 06 3 12 0 1 C 07 16 0 0 0 A 08 0 0 0 16 T 09 0 1 0 15 T 10 15 0 0 1 A 11 4 2 7 3 N 12 6 4 1 5 N 13 3 5 5 3 N 14 3 4 2 7 N 15 2 8 4 2 C XX BA 16 compiled sequences including 1 TRANSCompel sites XX BS CGGGTCATTAGAGTC; R02709; 12; 15;; n. BS GTAGACATTACCACC; R04225; 2; 15;; n. BS TTGGCCATCAGTCCC; R04226; 4; 15;; p. BS TCTATCATTAGAGCC; R04227; 6; 15;; n. BS TCTGTCATTAATTTC; R10024; 5; 15;; n. BS TGGGTCATTATTACA; R10025; 14; 15;; n. BS ACTGTTATTATTAAG; R10032; 3; 15;; n. BS NCTCACATTATACAT; R14650; 9; 15;; n. BS TCCCTCATTAGCTGG; R14651; 1; 15;; n. BS TCAGTAATTAATCAT; R14769; 5; 15;; p. BS CGGACCATTTCCCTG; R15419; 8; 15;; n. BS TGGGTCATTAGAGTC; R15427; 1; 15;; n. BS TGGCCCATTAAGGGC; R15491; 6; 15;; n. BS CGCACCATTAGCCTC; R15492; 5; 15;; n. BS AGGGTAATTAGATTA; R15493; 9; 15;; n. BS AAACCAATTAAAGTG; C00277, s00472; -2; 15;; n. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M01014 XX ID V$SOX_Q6 XX DT 27.08.2004 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA SOX XX BF T04918; Sox10; Species: human, Homo sapiens. BF T02894; Sox11; Species: human, Homo sapiens. BF T02895; Sox12; Species: human, Homo sapiens. BF T02420; Sox13; Species: mouse, Mus musculus. BF T04919; Sox14; Species: human, Homo sapiens. BF T02896; Sox15; Species: mouse, Mus musculus. BF T04920; Sox18; Species: human, Homo sapiens. BF T01843; Sox18; Species: mouse, Mus musculus. BF T01836; Sox2; Species: mouse, Mus musculus. BF T04915; Sox2; Species: human, Homo sapiens. BF T01837; Sox2; Species: chick, Gallus gallus. BF T04855; Sox20; Species: human, Homo sapiens. BF T04921; Sox21; Species: human, Homo sapiens. BF T04916; Sox3; Species: human, Homo sapiens. BF T01276; Sox4; Species: human, Homo sapiens. BF T01838; Sox4; Species: mouse, Mus musculus. BF T01429; Sox5; Species: mouse, Mus musculus. BF T01861; Sox5; Species: human, Homo sapiens. BF T02897; Sox6; Species: mouse, Mus musculus. BF T04917; Sox8; Species: human, Homo sapiens. BF T01854; Sox9; Species: mouse, Mus musculus. BF T01853; Sox9; Species: human, Homo sapiens. BF T05485; Sox9; Species: rat, Rattus norvegicus. BF T00997; SRY; Species: human, Homo sapiens. BF T01986; SRY; Species: mouse, Mus domesticus Torino strain. BF T02903; SRY; Species: gibbon ape, Hylobates lar. BF T01987; SRY; Species: dunnart, Sminthopsis macroura. BF T00996; SRY; Species: mouse, Mus musculus. XX P0 A C G T 01 1 4 0 1 C 02 0 0 1 5 T 03 0 6 0 0 C 04 1 0 0 5 T 05 0 0 0 6 T 06 0 0 0 6 T 07 0 0 6 0 G 08 1 0 0 5 T 09 0 0 1 5 T 10 4 1 0 1 A 11 1 2 1 2 N 12 1 1 4 0 G 13 3 1 1 1 A XX BA 6 compiled sequences including 1 TRANSCompel sites XX BS CGCTTTGTTCTCA; R03576; 3; 13;; n. BS ATCTTTGTTACAA; R03577; 5; 13;; n. BS TTCTTTGTTACGT; R03578; 5; 13;; n. BS CTCATTGTTATGC; R15133; 13; 13;; n. BS CTCTTTGTTTGGA; R15201; 3; 13;; p. BS CTCTTTGAGAAGG; C00219, s00367; -1; 13;; p. XX RN [1]; RE0017571. RA TRANSFAC_Team. RT New TRANSFAC MATRIX entries RL TRANSFAC Reports 3:0001 (2002). XX // AC M01015 XX ID P$PEND_01 XX DT 27.08.2004 (created); vma. DT 07.09.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA PEND XX BF T05977; PEND; Species: pea, Pisum sativum. XX P0 A C G T 01 0 2 3 33 T 02 36 0 0 2 A 03 36 0 1 1 A 04 0 0 36 2 G 05 35 3 0 0 A 06 37 0 1 0 A 07 10 1 25 2 G 08 2 2 2 31 T XX BA 38 selected sequences (which shared a similar core motif out of 43 sequences in total) XX BS CAAGAAAT; R14887; 1; 8;; p. BS GAAGAAGT; R14888; 4; 8;; p. BS TAAGAAGT; R14889; 8; 8;; p. BS TAAGAAGT; R14890; 9; 8;; p. BS TAAGCAGT; R14891; 1; 8;; p. BS TAATAGGA; R14892; 1; 8;; p. BS TATGAAGT; R14893; 5; 8;; p. BS GAAGAAAA; R14894; 10; 8;; p. BS TAAGAAGT; R14895; 7; 8;; p. BS TAAGAAGT; R14896; 6; 8;; p. BS TAAGAAGT; R14897; 8; 8;; p. BS TAAGAAGT; R14898; 6; 8;; p. BS TAAGAAAT; R14899; 7; 8;; p. BS TAAGAATT; R14900; 2; 8;; p. BS TAAGAAGT; R14901; 9; 8;; p. BS TAAGAAGT; R14902; 2; 8;; p. BS CAAGAAGT; R14903; 3; 8;; p. BS TAAGAAG; R14904; 14; 8; 21; p. BS GAAGAAAT; R14905; 4; 8;; p. BS TAGTAAGT; R14906; 4; 8;; p. BS TAAGAACT; R14907; 6; 8;; p. BS TAAGAATT; R14908; 7; 8;; p. BS TAAGAAGC; R14909; 9; 8;; p. BS TAAGAAGT; R14910; 4; 8;; p. BS TAAGAAGT; R14911; 9; 8;; p. BS TAAGAAGT; R14912; 1; 8;; p. BS TAAGAAGT; R14913; 6; 8;; p. BS TAAGAAAT; R14914; 4; 8;; p. BS TAAGAAAT; R14915; 5; 8;; p. BS TTAGAAAT; R14916; 11; 8;; p. BS TAAGAAGT; R14917; 5; 8;; p. BS TAAGAAGT; R14918; 9; 8;; p. BS TAAGAAAC; R14919; 4; 8;; p. BS TAAGCAGT; R14920; 4; 8;; p. BS TAAGAAGG; R14921; 13; 8;; p. BS TTAGCAGT; R14922; 3; 8;; p. BS TAAGAAAG; R14923; 12; 8;; p. BS TAAGAAAT; R14924; 2; 8;; p. XX CC random oligonucleotide selection assay, sequences were selected from a pool of oligonucleotides (containing a random 20-mer) by binding to a GST-fusion protein of the DNA-binding domain of PEND, in six rounds of selection and amplification [1] XX RN [1]; RE0024267. RX PUBMED: 11376142. RA Sato N., Ohta N. RT DNA-binding specificity and dimerization of the DNA-binding domain of the PEND protein in the chloroplast envelope membrane. RL Nucleic Acids Res. 29:2244-2250 (2001). XX // AC M01017 XX ID V$PBX1_03 XX DT 27.08.2004 (created); vma. DT 07.09.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA PBX1 XX BF T06000; Pbx1; Species: human, Homo sapiens. XX P0 A C G T 01 10 9 7 4 N 02 5 12 6 7 N 03 22 4 3 1 A 04 1 3 0 26 T 05 2 28 0 0 C 06 22 7 0 1 A 07 24 1 3 2 A 08 6 4 3 17 T 09 0 21 4 5 C 10 20 2 5 3 A 11 9 5 7 9 N 12 8 7 8 7 N XX BA 30 selected sequences XX BS CCATCAATCATC; R15382; 10; 12;; p. BS AGATCAATCATT; R15383; 8; 12;; p. BS ACATCAATCAAA; R15384; 9; 12;; p. BS CTATCAATCAAA; R15385; 8; 12;; p. BS AAATCCATCATG; R15388; 19; 12;; p. BS GGATCAAGCAGC; R15389; 13; 12;; p. BS ACGTCAATCAGC; R15390; 8; 12;; p. BS GCACCAATCAAT; R15391; 6; 12;; p. BS CGATCAAACGGG; R15392; 14; 12;; p. BS CCATCATCCAAT; R15393; 15; 12;; p. BS CCATCCGTCAAT; R15394; 8; 12;; p. BS GTCTCCATCATG; R15395; 19; 12;; p. BS TCATCAATGTGT; R15396; 13; 12;; p. BS ACACCCATCATG; R15397; 19; 12;; p. BS ACATCAAACGGA; R15398; 14; 12;; p. BS CCATCAAAGAAG; R15399; 13; 12;; p. BS TTGTCAACCATC; R15400; 19; 12;; p. BS GAATACATCAAA; R15401; 11; 12;; p. BS GAATACATCATC; R15402; 9; 12;; p. BS GGAACAATGACG; R15403; 8; 12;; p. BS ATCTCAAATAAC; R15404; 11; 12;; p. BS ATATCCGTCCCG; R15405; 9; 12;; p. BS CCCCCAATGACA; R15406; 7; 12;; p. BS GGATCTTCCAGA; R15407; 12; 12;; p. BS ATGTCAGTCGTA; R15408; 4; 12;; p. BS CGATCAAGTTCT; R15409; 12; 12;; p. BS TAATCAAGTGCC; R15410; 13; 12;; p. BS CACTCAAACGTG; R15411; 7; 12;; p. BS TTTTCAACTTGA; R15412; 15; 12;; p. BS ACATCACATCAT; R15413; 13; 12;; p. XX CC random oligonucleotide selection assay, sequences were selected by recombinant Pbx1 from a pool of random oligonucleotides in six rounds of selection and amplification [1] XX RN [1]; RE0024570. RX PUBMED: 8183558. RA LeBrun D. P., Cleary M. L. RT Fusion with E2A alters the transcriptional properties of the homeodomain protein PBX1 in t(1;19) leukemias. RL Oncogene 9:1641-1647 (1994). XX // AC M01019 XX ID V$TBX5_01 XX DT 21.10.2004 (created); elf. DT 21.10.2004 (updated); elf. CO Copyright (C), Biobase GmbH. XX NA TBX5 XX BF T04345; TBX5 (long isoform); Species: human, Homo sapiens. XX P0 A C G T 01 12 4 9 10 N 02 13 3 9 12 N 03 33 0 8 0 A 04 0 0 41 0 G 05 0 0 40 1 G 06 0 0 0 41 T 07 0 0 40 0 G 08 1 4 0 35 T 09 1 13 13 12 N 10 25 1 10 3 A 11 12 9 10 8 N 12 16 4 8 7 N XX BA 41 selected sequences (containing primary consensus binding site) XX CC random binding site selection assay from 26mer random oligonucleotides, three rounds of selection and amplification [1] XX RN [1]; RE0024959. RX PUBMED: 11555635. RA Ghosh T. K., Packham E. A., Bonser A. J., Robinson T. E., Cross S. J., Brook J. D. RT Characterization of the TBX5 binding site and analysis of mutations that cause Holt-Oram syndrome. RL Hum. Mol. Genet. 10:1983-1994 (2001). XX // AC M01020 XX ID V$TBX5_02 XX DT 21.10.2004 (created); elf. DT 16.11.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA TBX5 XX BF T04345; TBX5 (long isoform); Species: human, Homo sapiens. XX P0 A C G T 01 1 4 2 8 Y 02 4 4 5 2 N 03 8 1 4 2 R 04 0 0 15 1 G 05 0 0 15 2 G 06 0 0 0 17 T 07 0 0 14 0 G 08 0 2 0 12 T 09 0 2 4 7 K 10 5 3 3 0 V XX BA 17 selected sequences (containing secondary consensus binding site) XX CC random binding site selection assay from 26mer random oligonucleotides, three rounds of selection and amplification [1] XX RN [1]; RE0024959. RX PUBMED: 11555635. RA Ghosh T. K., Packham E. A., Bonser A. J., Robinson T. E., Cross S. J., Brook J. D. RT Characterization of the TBX5 binding site and analysis of mutations that cause Holt-Oram syndrome. RL Hum. Mol. Genet. 10:1983-1994 (2001). XX // AC M01021 XX ID P$ID1_01 XX DT 09.11.2004 (created); sla. DT 09.11.2004 (updated); sla. CO Copyright (C), Biobase GmbH. XX NA ID1 XX BF T03994; ID1; Species: maize, Zea mays. XX P0 A C G T 01 0 3 0 13 T 02 0 0 0 16 T 03 0 1 0 15 T 04 0 0 14 2 G 05 0 1 1 14 T 06 0 15 0 1 C 07 0 5 9 2 S 08 0 6 0 10 Y 09 4 2 0 10 T 10 5 2 0 9 W 11 3 1 0 12 T XX BA 16 selected sequences XX BS TTTGTCGTTTT; R15873; 6; 11;; p. BS TTTGTCGCTTT; R15875; 10; 11;; p. BS TTTGTCGTTAT; R15876; 3; 11;; p. BS TTTGTCGTATT; R15877; 8; 11;; p. BS TTTGTCCTATT; R15878; 1; 11;; p. BS TTTGTCGCTTA; R15879; 3; 11;; p. BS CTTGTCCTTAT; R15880; 1; 11;; p. BS CTCGTCGTTTT; R15881; 1; 11;; p. BS TTTGGCGTTAT; R15882; 4; 11;; p. BS TTTGTCCCATA; R15883; 7; 11;; p. BS TTTGTCCCTAC; R15884; 4; 11;; p. BS TTTGTCTCATT; R15885; 6; 11;; p. BS CTTGTCTTTAT; R15886; 9; 11;; p. BS TTTTCCGTTCT; R15887; 10; 11;; p. BS TTTGTTGTCCT; R15888; 6; 11;; p. BS TTTTTCCCCTA; R15889; 5; 11;; p. XX CC sequences were selected from a pool of oligonucleotides containing 20 bp of random sequences (six cycles of selection and amplification) [1]; the matrix was generated on the basis of the alignment which is given in the reference [1] XX RN [1]; RE0025087. RX PUBMED: 15020707. RA Kozaki A., Hake S., Colasanti J. RT The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties. RL Nucleic Acids Res. 32:1710-1720 (2004). XX // AC M01022 XX ID V$LEF1_Q2_01 XX DT 12.11.2004 (created); dtc. DT 29.11.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA LEF1 XX BF T00930; LEF-1; Species: mouse, Mus musculus. BF T00802; LEF-1; Species: human, Homo sapiens. BF T02905; LEF-1; Species: human, Homo sapiens. BF T03730; LEF-1; Species: rat, Rattus norvegicus. BF T02953; LEF-1; Species: zebra fish, Brachydanio rerio. BF T02963; LEF-1; Species: clawed frog, Xenopus laevis. BF T03553; LEF-1; Species: chick, Gallus gallus. XX P0 A C G T 01 2 8 8 4 N 02 12 3 1 7 W 03 7 1 1 14 T 04 1 22 0 0 C 05 23 0 0 0 A 06 22 1 0 0 A 07 21 0 1 1 A 08 0 2 21 0 G 09 4 3 9 7 N 10 5 6 10 2 N XX BA 23 compiled sequences including 1 TRANSCompel sites XX BS GAACAAAGGG; R03470; 1; 10;; p. BS GAACAAAGCG; R03576; 6; 10;; p. BS GAACAAAGGA; R04278; 1; 10;; p. BS GATCAAAGCC; R08576; -1; 10;; n. BS CATCAAAGGA; R08589; -1; 10;; p. BS CATCAAAGTA; R08591; -1; 10;; p. BS CTTCAAAGGG; R08631; 7; 10;; n. BS NTACAAAGAC; R08638; 8; 10;; n. BS CTTCAAACTT; R08649; -2; 10;; n. BS TTACAAAGGA; R08809; 10; 10;; n. BS CTTCAAAGCC; R08816; 9; 10;; n. BS CATCAAAGTG; R08820; 5; 10;; p. BS GAACAAAGAG; R08821; 5; 10;; n. BS CAACAATGGG; R08823; 5; 10;; n. BS CTTCAAAGGG; R08824; 5; 10;; p. BS GATCAAGGGG; R13042; 3; 10;; p. BS GAGCAAAGAA; R14796; -1; 10;; n. BS GCTCACAGAG; R14797; 12; 10;; p. BS TATCAAAGTC; R15455; 15; 10;; n. BS ACCCAAAGTG; R15488; 17; 10;; n. BS AGTCAAACTC; R15489; 20; 10;; n. BS TCTAAAAGGC; R15773; 4; 10;; p. BS TTTCAAAGTT; C00269, s00456; -1; 10;; p. XX RN [1]; RE0025141. RA TRANSFAC_Team. RT New matrix entries from compiled binding sites. RL TRANSFAC Reports Rel84:0001 (2004). XX // AC M01023 XX ID V$HSF1_Q6 XX DT 12.11.2004 (created); dtc. DT 22.11.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA HSF1 XX BF T01044; HSF1; Species: chick, Gallus gallus. BF T05814; HSF1; Species: rat, Rattus norvegicus. BF T00384; HSF1; Species: mouse, Mus musculus. BF T01042; HSF1 (long); Species: human, Homo sapiens. BF T02104; HSF1 (short); Species: human, Homo sapiens. BF T05813; HSF1long; Species: mouse, Mus musculus. BF T01525; HSF1short; Species: mouse, Mus musculus. XX P0 A C G T 01 4 4 1 2 N 02 0 1 0 10 T 03 0 0 1 10 T 04 0 11 0 0 C 05 0 3 0 8 T 06 5 2 4 0 R 07 0 0 11 0 G 08 8 1 2 0 A 09 8 1 2 0 A 10 4 3 4 0 V 11 2 3 2 4 N 12 0 0 1 10 T 13 0 0 0 11 T 14 0 11 0 0 C 15 1 0 3 7 T 16 0 6 1 4 Y 17 4 5 2 0 M XX BA 11 compiled sequences XX BS ATTCCAGGGGTTTCGCC; R00762; -3; 17;; n. BS CTTCCAGCAGTTTCGCG; R03464; -1; 17;; n. BS ACTCTGGAGAGTTCTGA; R04287; 15; 17;; p. BS GTTCCAGAAGCTTCACA; R15761; 11; 17;; p. BS ATTCTGGAACTTTCTCA; R15766; 6; 17;; p. BS ATTCTCGAACATTCTTC; R15797; 9; 17;; n. BS CTGCTAGAAACTTCTTC; R15803; 9; 17;; n. BS TTTCTGGAAGGTTCGTG; R15816; 11; 17;; p. BS CTTCTCGAAAAGTCTTA; R15818; 9; 17;; n. BS CTTCTGGGCATTTCTCC; R15819; 16; 17;; p. BS TTTCTAGAACCTTCTCC; R15820; 9; 17;; n. XX RN [1]; RE0025141. RA TRANSFAC_Team. RT New matrix entries from compiled binding sites. RL TRANSFAC Reports Rel84:0001 (2004). XX // AC M01028 XX ID V$NRSF_Q4 XX DT 12.11.2004 (created); dtc. DT 29.11.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA NRSF XX BF T06124; NRSF; Species: human, Homo sapiens. BF T01974; NRSF form 1; Species: human, Homo sapiens. BF T01973; NRSF form 2; Species: human, Homo sapiens. BF T05934; REST; Species: mouse, Mus musculus. BF T05957; REST; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 2 11 1 G 02 1 8 0 5 Y 03 4 1 7 2 R 04 0 13 1 0 C 05 1 0 0 13 T 06 0 2 12 0 G 07 0 2 0 12 T 08 0 13 0 1 C 09 0 13 1 0 C 10 5 2 7 0 R 11 0 6 0 8 Y 12 0 0 12 2 G 13 0 2 12 0 G 14 1 0 0 13 T 15 0 0 12 2 G 16 0 14 0 0 C 17 1 0 0 13 T 18 0 1 13 0 G 19 9 2 3 0 A XX BA 14 compiled sequences XX BS GCAGAGTCCATTCAGCACC; R14827; -6; 19;; p. BS GCACTCTCCGTGGTGCTGA; R15608; 2; 19;; n. BS GCGCTCTCCGCGGTGCTGA; R15609; 2; 19;; n. BS GTCCTGCCCATGGTGCTGA; R15627; 9; 19;; p. BS GAACTGTCCGTGGTGCTGG; R15635; 11; 19;; n. BS CTTCTGTCCATGGTGCTGA; R15639; 3; 19;; n. BS GCACTGTCCGCGGTGCTGA; R15652; 2; 19;; n. BS GTGCTGTCCGTGGTTCTGA; R15654; 2; 19;; n. BS GCGCTGTCCGCGGTGCTGA; R15657; 2; 19;; n. BS GCTCTGTCCACGGTGCTGG; R15659; 2; 19;; n. BS TCGCTGTCCCTGGTGCTGA; R15660; 2; 19;; n. BS GCGCTGTCCGCGGTGCTGC; R15662; 2; 19;; n. BS GTGCTGCTGCCTCTGCTGG; R15673; -3; 19;; n. BS CTGCTGTCCATGGTTCTGA; R15680; 2; 19;; n. XX RN [1]; RE0025141. RA TRANSFAC_Team. RT New matrix entries from compiled binding sites. RL TRANSFAC Reports Rel84:0001 (2004). XX // AC M01029 XX ID V$TFE_Q6 XX DT 12.11.2004 (created); dtc. DT 29.11.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TFE XX BF T01553; MITF; Species: human, Homo sapiens. BF T01554; MITF; Species: mouse, Mus musculus. BF T06080; MITF; Species: cattle, Bos taurus. BF T00811; TFE3; Species: human, Homo sapiens. BF T00810; TFE3-L; Species: mouse, Mus musculus. BF T00814; TFE3-S; Species: mouse, Mus musculus. BF T00812; TFEB; Species: human, Homo sapiens. BF T06082; TFEB; Species: mouse, Mus musculus. BF T01552; TFEC; Species: rat, Rattus norvegicus. XX P0 A C G T 01 6 3 3 16 T 02 0 28 0 0 C 03 28 0 0 0 A 04 1 6 1 20 T 05 0 1 27 0 G 06 0 0 0 28 T 07 0 0 28 0 G 08 10 7 7 4 N XX BA 28 compiled sequences including 2 TRANSCompel sites XX BS TCATGTGC; R00844; -1; 8;; p. BS TCACGTGT; R04253; 4; 8;; p. BS ACATGTGA; R11046; 15; 8;; p. BS TCACGTGG; R15203; 13; 8;; p. BS TCACGTGT; R15371; 10; 8;; p. BS CCATGTGG; R15373; 9; 8;; n. BS CCATGTGA; R15374; 9; 8;; n. BS GCATGTGA; R15381; 6; 8;; n. BS TCATGTGA; R15386; 5; 8;; p. BS ACATGTGA; R15387; 8; 8;; p. BS TCACGTGG; R15417; 8; 8;; p. BS TCATGTGC; R15421; 12; 8;; p. BS TCATGTGC; R15422; 9; 8;; p. BS ACATGTGA; R15424; 14; 8;; p. BS ACAAGTGT; R15425; 7; 8;; p. BS TCATGTGC; R15430; 9; 8;; p. BS ACATGTGA; R15438; 11; 8;; p. BS TCATGTGA; R15440; 6; 8;; p. BS TCATGTGC; R15441; 8; 8;; p. BS CCATGTGC; R15486; 10; 8;; p. BS ACATGTGT; R15497; 12; 8;; n. BS GCATGTGC; R15500; 2; 8;; n. BS TCATGTGG; R15501; 13; 8;; p. BS TCATGTGA; R15509; 2; 8;; n. BS TCATGTGA; R15758; 9; 8;; p. BS GCAGCTGC; R15851; -1; 8;; p. BS TCACGTGG; C00198, s00329; -1; 8;; p. BS TCACGTGG; C00245, s00416; -1; 8;; n. XX RN [1]; RE0025141. RA TRANSFAC_Team. RT New matrix entries from compiled binding sites. RL TRANSFAC Reports Rel84:0001 (2004). XX // AC M01030 XX ID F$RIM101_01 XX DT 15.11.2004 (created); vma. DT 15.11.2004 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Rim101p XX BF T06356; Rim101p; Species: Candida albicans (Yeast). XX P0 A C G T 01 0 21 0 2 C 02 0 23 0 0 C 03 19 2 2 0 A 04 23 0 0 0 A 05 0 0 22 1 G 06 10 7 2 4 N 07 16 5 0 1 A 08 14 5 0 2 A XX BA 23 selected sequences (only 19 of the 23 sequences are given in the paper) [1] XX CC the sequences were selected from a pool of oligonucleotides with a randomized 20-mer core, six rounds of selection and amplification [1] XX RN [1]; RE0025121. RX PUBMED: 12912891. RA Ramon A. M., Fonzi W. A. RT Diverged binding specificity of Rim101p, the Candida albicans ortholog of PacC. RL Eukaryot. Cell 2:718-728 (2003). XX // AC M01031 XX ID V$HNF4_Q6_01 XX DT 25.11.2004 (created); dtc. DT 09.12.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF4 XX BF T00012; HNF-4; Species: human, Homo sapiens. BF T02758; HNF-4; Species: human, Homo sapiens. BF T05017; HNF-4; Species: rat, Rattus norvegicus. BF T05294; HNF-4; Species: chipmunk, Tamias asiaticus (sibiricus). BF T03828; HNF-4alpha; Species: human, Homo sapiens. BF T01181; HNF-4alpha; Species: mouse, Mus musculus. BF T05287; HNF-4alpha; Species: mouse, Mus musculus. BF T00013; HNF-4alpha; Species: rat, Rattus norvegicus. BF T01182; HNF-4alpha; Species: rat, Rattus norvegicus. BF T05288; HNF-4alpha; Species: rat, Rattus norvegicus. BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. BF T02421; HNF-4alpha1; Species: human, Homo sapiens. BF T02424; HNF-4alpha1; Species: mouse, Mus musculus. BF T02429; HNF-4alpha1; Species: clawed frog, Xenopus laevis. BF T00373; HNF-4alpha2; Species: human, Homo sapiens. BF T02422; HNF-4alpha2; Species: rat, Rattus norvegicus. BF T02423; HNF-4alpha2; Species: mouse, Mus musculus. BF T02428; HNF-4alpha3; Species: human, Homo sapiens. BF T02425; HNF-4alpha4; Species: human, Homo sapiens. XX P0 A C G T 01 19 8 21 10 N 02 5 2 46 5 G 03 11 3 30 14 G 04 5 16 20 17 N 05 2 48 2 6 C 06 52 1 0 5 A 07 46 2 10 0 A 08 49 0 9 0 A 09 0 0 58 0 G 10 3 1 26 28 K 11 3 19 7 29 Y 12 1 47 2 8 C 13 46 2 6 4 A 14 17 15 14 12 N XX BA 58 compiled sequences including 5 TRANSCompel sites XX BS GGGGCTAAGTCCAC; R00114; 16; 14;; n. BS GGTTTAAAGTTCAT; R01183; 6; 14;; n. BS AGTTCAGAGGTTAA; R01186; 5; 14;; n. BS AGGTCAAAGATTGC; R01457; 9; 14;; p. BS GGTCCAAAGGGCGC; R01612; 8; 14;; n. BS CGGCCAAAGGTCAT; R01690; 5; 14;; n. BS TAGGCAAGGTTCAT; R03034; -2; 14;; p. BS TCTGCAAGGGTCAT; R03035; -2; 14;; p. BS AGTCCAAAGTTCAG; R03881; 7; 14;; p. BS CCGCCCCAGCACAC; R04454; -1; 14;; p. BS GAGTCAAAGGTCAT; R04770; -1; 14;; n. BS AGTTCAAAGTTCAA; R08877; 3; 14;; n. BS GGTCCAGAGGGCAA; R08883; 3; 14;; p. BS AAACCAAAGTTCAC; R08885; 6; 14;; n. BS GGGCCAAAGGTCTC; R13018; 9; 14;; n. BS AGGTCAGGGGACAA; R13031; 6; 14;; p. BS GGGCCAGAGTCCAG; R13032; 3; 14;; n. BS AGATCAAAGAGCAG; R13033; 4; 14;; n. BS ATCTCAAAGTCTAA; R13034; 12; 14;; n. BS TGTCCAAAGTCCAA; R13037; 2; 14;; p. BS GAGTCAAGGGTCAA; R13048; 1; 14;; p. BS CGACCAAAGTCCAG; R13055; 3; 14;; p. BS AGGACAAAGACCAC; R13057; 7; 14;; n. BS TGGGCAAAGGTCAC; R13058; 10; 14;; n. BS CGGGCAAAGTTCTC; R13059; 7; 14;; n. BS TGATTAAAGTCCAA; R13060; 3; 14;; p. BS TGAACTAAGTCCAT; R13063; 7; 14;; n. BS CGGGCAAAGGCCAT; R13065; 6; 14;; p. BS AGCTCAAAGTTCAA; R13067; 18; 14;; p. BS TGAACTAAGTCCAT; R13070; 3; 14;; n. BS GGGGTAGGGGCCAC; R13208; 4; 14;; n. BS GGTCGAGAGGTCAG; R13209; 2; 14;; n. BS GTACCAAAGTACAA; R14385; 13; 14;; n. BS GGTTCAAAGGTCTC; R15791; 7; 14;; n. BS AGGGCAGAGGGCAG; R15841; 22; 14;; n. BS GGGCCAAGGTTCCC; R15842; 8; 14;; n. BS GGGTCAAAGGCACA; R15845; 12; 14;; p. BS GTCTAAGAGTCCAT; R15850; 9; 14;; n. BS AGTCAAAAGTCCAA; R15854; 10; 14;; p. BS TAAGCAAAGTGTAG; R15891; 12; 14;; n. BS AGGGCAAAGGCCAT; R15898; 15; 14;; p. BS CTAGCAAAGGTTAT; R15902; 4; 14;; p. BS AGTGGTAAGGTCGA; R15904; 16; 14;; n. BS TGTGCAAAGTTGAG; R15907; 8; 14;; p. BS TGAGCTAAGTTCAA; R15908; 8; 14;; n. BS AGGGCAAGGTCCAG; R15916; 11; 14;; p. BS GGAGCAAAGTCCAC; R15918; 9; 14;; n. BS CTGCCAAAGGGCAG; R15921; 9; 14;; p. BS GGGACAAAGGTTGT; R15922; 9; 14;; n. BS CGGGTAAAGGTGAA; R15923; 24; 14;; p. BS GGGTCACAGTGCAG; R15925; 6; 14;; p. BS GGGTTAAAGGTTGC; R15940; 6; 14;; n. BS GGGTCAAGGGTCAG; R15941; 7; 14;; p. BS AGGGCAGGGGTCAA; C00123, s00182; 9; 14;; n. BS AGGCCAAAGTCCTG; C00285, s00491; 9; 14;; n. BS AGGGTAAAGGTTGA; C00288, s00499; 2; 14;; n. BS GGGACAAAGTTCAC; C00290, s00503; 8; 14;; p. BS AGTGCAGAGTCCAG; C00292, s00507; 1; 14;; p. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01032 XX ID V$HNF4_Q6_02 XX DT 25.11.2004 (created); dtc. DT 09.12.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF4 XX DE half-site 1 XX BF T00012; HNF-4; Species: human, Homo sapiens. BF T02758; HNF-4; Species: human, Homo sapiens. BF T05017; HNF-4; Species: rat, Rattus norvegicus. BF T05294; HNF-4; Species: chipmunk, Tamias asiaticus (sibiricus). BF T03828; HNF-4alpha; Species: human, Homo sapiens. BF T01181; HNF-4alpha; Species: mouse, Mus musculus. BF T05287; HNF-4alpha; Species: mouse, Mus musculus. BF T00013; HNF-4alpha; Species: rat, Rattus norvegicus. BF T01182; HNF-4alpha; Species: rat, Rattus norvegicus. BF T05288; HNF-4alpha; Species: rat, Rattus norvegicus. BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. BF T02421; HNF-4alpha1; Species: human, Homo sapiens. BF T02424; HNF-4alpha1; Species: mouse, Mus musculus. BF T02429; HNF-4alpha1; Species: clawed frog, Xenopus laevis. BF T00373; HNF-4alpha2; Species: human, Homo sapiens. BF T02422; HNF-4alpha2; Species: rat, Rattus norvegicus. BF T02423; HNF-4alpha2; Species: mouse, Mus musculus. BF T02428; HNF-4alpha3; Species: human, Homo sapiens. BF T02425; HNF-4alpha4; Species: human, Homo sapiens. XX P0 A C G T 01 49 0 9 0 A 02 0 0 58 0 G 03 3 1 26 28 K 04 3 19 7 29 Y 05 1 47 2 8 C 06 46 2 6 4 A XX BA 58 compiled sequences including 5 TRANSCompel sites XX BS AGTCCA; R00114; 17; 6;; n. BS AGTTCA; R01183; 7; 6;; n. BS AGGTTA; R01186; 6; 6;; n. BS AGATTG; R01457; 16; 6;; p. BS AGGGCG; R01612; 9; 6;; n. BS AGGTCA; R01690; 6; 6;; n. BS GGTTCA; R03034; 6; 6;; p. BS GGGTCA; R03035; 6; 6;; p. BS AGTTCA; R03881; 14; 6;; p. BS AGCACA; R04454; 7; 6;; p. BS AGGTCA; R04770; 1; 6;; n. BS AGTTCA; R08877; 4; 6;; n. BS AGGGCA; R08883; 10; 6;; p. BS AGTTCA; R08885; 7; 6;; n. BS AGGTCT; R13018; 10; 6;; n. BS GGGACA; R13031; 13; 6;; p. BS AGTCCA; R13032; 4; 6;; n. BS AGAGCA; R13033; 5; 6;; n. BS AGTCTA; R13034; 13; 6;; n. BS AGTCCA; R13037; 9; 6;; p. BS GGGTCA; R13048; 8; 6;; p. BS AGTCCA; R13055; 10; 6;; p. BS AGACCA; R13057; 8; 6;; n. BS AGGTCA; R13058; 11; 6;; n. BS AGTTCT; R13059; 8; 6;; n. BS AGTCCA; R13060; 10; 6;; p. BS AGTCCA; R13063; 8; 6;; n. BS AGGCCA; R13065; 13; 6;; p. BS AGTTCA; R13067; 25; 6;; p. BS AGTCCA; R13070; 4; 6;; n. BS GGGCCA; R13208; 5; 6;; n. BS AGGTCA; R13209; 3; 6;; n. BS AGTACA; R14385; 14; 6;; n. BS AGGTCT; R15791; 8; 6;; n. BS AGGGCA; R15841; 23; 6;; n. BS GGTTCC; R15842; 9; 6;; n. BS AGGCAC; R15845; 19; 6;; p. BS AGTCCA; R15850; 10; 6;; n. BS AGTCCA; R15854; 17; 6;; p. BS AGTGTA; R15891; 13; 6;; n. BS AGGCCA; R15898; 22; 6;; p. BS AGGTTA; R15902; 11; 6;; p. BS AGGTCG; R15904; 17; 6;; n. BS AGTTGA; R15907; 15; 6;; p. BS AGTTCA; R15908; 9; 6;; n. BS GGTCCA; R15916; 18; 6;; p. BS AGTCCA; R15918; 10; 6;; n. BS AGGGCA; R15921; 16; 6;; p. BS AGGTTG; R15922; 10; 6;; n. BS AGGTGA; R15923; 31; 6;; p. BS AGTGCA; R15925; 13; 6;; p. BS AGGTTG; R15940; 7; 6;; n. BS GGGTCA; R15941; 14; 6;; p. BS GGGTCA; C00123, s00182; 10; 6;; n. BS AGTCCT; C00285, s00491; 10; 6;; n. BS AGGTTG; C00288, s00499; 3; 6;; n. BS AGTTCA; C00290, s00503; 15; 6;; p. BS AGTCCA; C00292, s00507; 8; 6;; p. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01033 XX ID V$HNF4_Q6_03 XX DT 25.11.2004 (created); dtc. DT 09.12.2004 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA HNF4 XX DE half-site 2 XX BF T00012; HNF-4; Species: human, Homo sapiens. BF T02758; HNF-4; Species: human, Homo sapiens. BF T05017; HNF-4; Species: rat, Rattus norvegicus. BF T05294; HNF-4; Species: chipmunk, Tamias asiaticus (sibiricus). BF T03828; HNF-4alpha; Species: human, Homo sapiens. BF T01181; HNF-4alpha; Species: mouse, Mus musculus. BF T05287; HNF-4alpha; Species: mouse, Mus musculus. BF T00013; HNF-4alpha; Species: rat, Rattus norvegicus. BF T01182; HNF-4alpha; Species: rat, Rattus norvegicus. BF T05288; HNF-4alpha; Species: rat, Rattus norvegicus. BF T00372; HNF-4alpha1; Species: rat, Rattus norvegicus. BF T02421; HNF-4alpha1; Species: human, Homo sapiens. BF T02424; HNF-4alpha1; Species: mouse, Mus musculus. BF T02429; HNF-4alpha1; Species: clawed frog, Xenopus laevis. BF T00373; HNF-4alpha2; Species: human, Homo sapiens. BF T02422; HNF-4alpha2; Species: rat, Rattus norvegicus. BF T02423; HNF-4alpha2; Species: mouse, Mus musculus. BF T02428; HNF-4alpha3; Species: human, Homo sapiens. BF T02425; HNF-4alpha4; Species: human, Homo sapiens. XX P0 A C G T 01 19 8 21 10 N 02 5 2 46 5 G 03 11 3 30 14 G 04 5 16 20 17 N 05 2 48 2 6 C 06 52 1 0 5 A XX BA 58 compiled sequences including 5 TRANSCompel sites XX BS GGGGCT; R00114; 24; 6;; n. BS GGTTTA; R01183; 14; 6;; n. BS AGTTCA; R01186; 13; 6;; n. BS AGGTCA; R01457; 9; 6;; p. BS GGTCCA; R01612; 16; 6;; n. BS CGGCCA; R01690; 13; 6;; n. BS TAGGCA; R03034; -2; 6;; p. BS TCTGCA; R03035; -2; 6;; p. BS AGTCCA; R03881; 7; 6;; p. BS CCGCCC; R04454; -1; 6;; p. BS GAGTCA; R04770; 8; 6;; n. BS AGTTCA; R08877; 11; 6;; n. BS GGTCCA; R08883; 3; 6;; p. BS AAACCA; R08885; 14; 6;; n. BS GGGCCA; R13018; 17; 6;; n. BS AGGTCA; R13031; 6; 6;; p. BS GGGCCA; R13032; 11; 6;; n. BS AGATCA; R13033; 12; 6;; n. BS ATCTCA; R13034; 20; 6;; n. BS TGTCCA; R13037; 2; 6;; p. BS GAGTCA; R13048; 1; 6;; p. BS CGACCA; R13055; 3; 6;; p. BS AGGACA; R13057; 15; 6;; n. BS TGGGCA; R13058; 18; 6;; n. BS CGGGCA; R13059; 15; 6;; n. BS TGATTA; R13060; 3; 6;; p. BS TGAACT; R13063; 15; 6;; n. BS CGGGCA; R13065; 6; 6;; p. BS AGCTCA; R13067; 18; 6;; p. BS TGAACT; R13070; 11; 6;; n. BS GGGGTA; R13208; 12; 6;; n. BS GGTCGA; R13209; 10; 6;; n. BS GTACCA; R14385; 21; 6;; n. BS GGTTCA; R15791; 15; 6;; n. BS AGGGCA; R15841; 30; 6;; n. BS GGGCCA; R15842; 16; 6;; n. BS GGGTCA; R15845; 12; 6;; p. BS GTCTAA; R15850; 17; 6;; n. BS AGTCAA; R15854; 10; 6;; p. BS TAAGCA; R15891; 20; 6;; n. BS AGGGCA; R15898; 15; 6;; p. BS CTAGCA; R15902; 4; 6;; p. BS AGTGGT; R15904; 24; 6;; n. BS TGTGCA; R15907; 8; 6;; p. BS TGAGCT; R15908; 16; 6;; n. BS AGGGCA; R15916; 11; 6;; p. BS GGAGCA; R15918; 17; 6;; n. BS CTGCCA; R15921; 9; 6;; p. BS GGGACA; R15922; 17; 6;; n. BS CGGGTA; R15923; 24; 6;; p. BS GGGTCA; R15925; 6; 6;; p. BS GGGTTA; R15940; 14; 6;; n. BS GGGTCA; R15941; 7; 6;; p. BS AGGGCA; C00123, s00182; 17; 6;; n. BS AGGCCA; C00285, s00491; 17; 6;; n. BS AGGGTA; C00288, s00499; 10; 6;; n. BS GGGACA; C00290, s00503; 8; 6;; p. BS AGTGCA; C00292, s00507; 1; 6;; p. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01034 XX ID V$EBOX_Q6_01 XX DT 17.01.2005 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA Ebox XX BF T01497; ALF1A; Species: mouse, Mus musculus. BF T05848; BHLHB2; Species: rat, Rattus norvegicus. BF T05851; BHLHB3; Species: rat, Rattus norvegicus. BF T00140; c-Myc; Species: human, Homo sapiens. BF T00141; c-Myc; Species: chick, Gallus gallus. BF T00142; c-Myc; Species: rat, Rattus norvegicus. BF T00143; c-Myc; Species: mouse, Mus musculus. BF T03427; c-Myc; Species: chimpanzee, Pan troglodytes. BF T03428; c-Myc; Species: woodchuck, Marmota monax. BF T03430; c-Myc; Species: gibbon ape, Hylobates lar. BF T03432; c-Myc; Species: dog, Canis familiaris (Canis canis). BF T03433; c-Myc; Species: common marmoset, Callithrix jacchus. BF T03450; c-Myc; Species: zebra fish, Brachydanio rerio. BF T03454; c-Myc; Species: goldfish, Carassius auratus. BF T03455; c-Myc; Species: sheep, Ovis aries. BF T03462; c-Myc; Species: rainbow trout, Oncorhynchus mykiss. BF T03466; c-Myc; Species: wild cat, Felis silvestris. BF T03532; c-Myc; Species: domestic pig, Sus scrofa. BF T03537; c-Myc; Species: canary, Serinus canaria. BF T03464; c-Myc I; Species: clawed frog, Xenopus laevis. BF T03465; c-Myc II; Species: clawed frog, Xenopus laevis. BF T05838; DEC1; Species: human, Homo sapiens. BF T05839; DEC2; Species: human, Homo sapiens. BF T05845; DEC2; Species: mouse, Mus musculus. BF T01566; deltaMax; Species: human, Homo sapiens. BF T00204; E12; Species: human, Homo sapiens. BF T00675; E12; Species: rat, Rattus norvegicus. BF T01786; E12; Species: mouse, Mus musculus. BF T01787; E12; Species: clawed frog, Xenopus laevis. BF T00207; E47; Species: human, Homo sapiens. BF T00674; E47; Species: rat, Rattus norvegicus. BF T01788; E47; Species: mouse, Mus musculus. BF T00945; EMF1; Species: clawed frog, Xenopus. BF T00946; EMF2; Species: clawed frog, Xenopus. BF T00947; EMF3; Species: clawed frog, Xenopus. BF T00948; EMF4; Species: clawed frog, Xenopus. BF T01569; Hand1; Species: mouse, Mus musculus. BF T04371; Hand1; Species: chick, Gallus gallus. BF T04373; HAND1; Species: human, Homo sapiens. BF T04375; Hand1; Species: rat, Rattus norvegicus. BF T04380; Hand1; Species: rabbit, Oryctolagus cuniculus. BF T04381; Hand1; Species: clawed frog, Xenopus laevis. BF T04385; Hand1; Species: sheep, Ovis aries. BF T04370; Hand2; Species: mouse, Mus musculus. BF T04372; Hand2; Species: chick, Gallus gallus. BF T04374; HAND2; Species: human, Homo sapiens. BF T04387; Hand2; Species: clawed frog, Xenopus laevis. BF T04388; Hand2; Species: zebra fish, Brachydanio rerio. BF T01503; HEB; Species: human, Homo sapiens. BF T02272; HEB1-p67; Species: human, Homo sapiens. BF T02271; HEB1-p94; Species: human, Homo sapiens. BF T01447; HEN1; Species: rat, Rattus norvegicus. BF T01654; HEN1; Species: human, Homo sapiens. BF T01655; HEN1; Species: mouse, Mus musculus. BF T00406; INSAF; Species: hamster. BF T01188; INSAF; Species: rat, Rattus norvegicus. BF T01189; INSAF; Species: mouse, Mus musculus. BF T01794; INSAF; Species: human, Homo sapiens. BF T00431; ITF; Species: human, Homo sapiens. BF T00432; ITF-1; Species: human, Homo sapiens. BF T00433; ITF-2; Species: human, Homo sapiens. BF T01565; Mad1; Species: human, Homo sapiens. BF T02390; Mad1; Species: mouse, Mus musculus. BF T02391; Mad3; Species: mouse, Mus musculus. BF T02392; Mad4; Species: mouse, Mus musculus. BF T00484; MASH-1; Species: rat, Rattus norvegicus. BF T01619; MASH-1; Species: mouse, Mus musculus. BF T01620; MASH-1; Species: human, Homo sapiens. BF T00485; MASH-2; Species: rat, Rattus norvegicus. BF T05056; Max; Species: human, Homo sapiens. BF T03552; Max; Species: zebra fish, Brachydanio rerio. BF T03570; Max; Species: chick, Gallus gallus. BF T03595; Max; Species: rat, Rattus norvegicus. BF T03596; Max; Species: clawed frog, Xenopus laevis. BF T00489; Max1; Species: human, Homo sapiens. BF T01567; Max2; Species: human, Homo sapiens. BF T00506; MEF1; Species: mouse, Mus musculus. BF T01554; MITF; Species: mouse, Mus musculus. BF T04675; MRF-2; Species: human, Homo sapiens. BF T00512; MRF4; Species: rat, Rattus norvegicus. BF T01537; MRF4; Species: mouse, Mus musculus. BF T01538; MRF4; Species: chick, Gallus gallus. BF T01539; MRF4; Species: clawed frog, Xenopus. BF T01564; Mxi1; Species: human, Homo sapiens. BF T00519; Myf-3; Species: human, Homo sapiens. BF T00520; Myf-4; Species: human, Homo sapiens. BF T00521; Myf-5; Species: human, Homo sapiens. BF T00949; Myf-5; Species: clawed frog, Xenopus laevis. BF T01534; Myf-5; Species: mouse, Mus musculus. BF T01535; Myf-5; Species: cattle, Bos taurus. BF T01536; Myf-5; Species: chick, Gallus domesticus. BF T03903; myf-5; Species: Common carp, Cyprinus carpio. BF T03905; myf-5; Species: zebra fish, Brachydanio rerio. BF T00522; Myf-6; Species: human, Homo sapiens. BF T00525; MyoD; Species: human, Homo sapiens. BF T00524; MyoD; Species: clawed frog, Xenopus laevis. BF T00526; MyoD; Species: mouse, Mus musculus. BF T00527; MyoD; Species: monkey, Cercopithecus aethiops. BF T01128; MyoD; Species: chick, Gallus gallus. BF T01551; MyoD; Species: quail, Coturnix coturnix. BF T03907; myoD; Species: zebra fish, Brachydanio rerio. BF T03912; myoD (275 AA); Species: rainbow trout, Oncorhynchus mykiss. BF T03911; myoD (376 AA); Species: rainbow trout, Oncorhynchus mykiss. BF T00528; myogenin; Species: mouse, Mus musculus. BF T01531; myogenin; Species: chick, Gallus gallus. BF T01532; myogenin; Species: rat, Rattus norvegicus. BF T01533; myogenin; Species: quail, Coturnix coturnix. BF T03900; myogenin; Species: Common carp, Cyprinus carpio. BF T03901; myogenin; Species: rainbow trout, Oncorhynchus mykiss. BF T01445; N-Myc; Species: mouse, Mus musculus. BF T02379; N-Myc; Species: human, Homo sapiens. BF T02381; N-Myc; Species: canary, Serinus canaria. BF T02382; N-Myc; Species: chick, Gallus gallus. BF T02383; N-Myc; Species: clawed frog, Xenopus laevis. BF T03442; N-Myc; Species: rat, Rattus norvegicus. BF T03440; N-Myc1; Species: woodchuck, Marmota monax. BF T03443; N-Myc2; Species: woodchuck, Marmota monax. BF T01789; SCBPgamma; Species: rat, Rattus norvegicus. BF T02327; Stra13; Species: mouse, Mus musculus. BF T00790; Tal-1; Species: human, Homo sapiens. BF T01799; Tal-1; Species: mouse, Mus musculus. BF T01800; Tal-1; Species: chick, Gallus gallus. BF T01448; Tal-1beta; Species: human, Homo sapiens. BF T01630; Tal-2; Species: human, Homo sapiens. BF T01631; Tal-2; Species: mouse, Mus musculus. BF T00811; TFE3; Species: human, Homo sapiens. BF T00810; TFE3-L; Species: mouse, Mus musculus. BF T00814; TFE3-S; Species: mouse, Mus musculus. BF T00812; TFEB; Species: human, Homo sapiens. BF T00870; USF; Species: hamster. BF T00872; USF; Species: chick, Gallus gallus. BF T00876; USF; Species: duck, Cairina moschata. BF T00875; USF-1; Species: rat, Rattus norvegicus. BF T00877; USF-1; Species: mouse, Mus musculus. BF T02378; USF-1; Species: Kenyan clawed frog, Xenopus borealis. BF T00874; USF1; Species: human, Homo sapiens. BF T00924; USF1:USF2; Species: rat, Rattus norvegicus. BF T05262; USF1:USF2; Species: rat, Rattus norvegicus. BF T05405; USF1:USF2; Species: human, Homo sapiens. BF T05418; USF1a; Species: rabbit, Oryctolagus cuniculus. BF T05419; USF1b; Species: rabbit, Oryctolagus cuniculus. BF T00878; USF2; Species: human, Homo sapiens. BF T01555; USF2; Species: mouse, Mus musculus. BF T02115; USF2; Species: rat, Rattus norvegicus. BF T02377; USF2b; Species: human, Homo sapiens. BF T03533; v-Myc; Species: Avian myelocytomatosis virus CMII. BF T03535; v-Myc; Species: Feline leukemia provirus FTT. BF T03540; v-Myc; Species: Avian myelocytomatosis virus MC29. BF T03546; v-Myc; Species: HBI, avian myelocytomatosis virus. BF T03547; v-Myc; Species: MH2E21, avian retrovirus. BF T03548; v-Myc; Species: OK10, avian retrovirus. XX P0 A C G T 01 16 59 21 23 N 02 0 118 0 1 C 03 106 7 1 5 A 04 4 94 15 6 C 05 23 44 48 4 S 06 0 0 1 118 T 07 1 4 112 2 G 08 47 21 21 30 N 09 5 71 14 29 C 10 16 47 26 30 N XX BA 119 compiled sequences including 19 TRANSCompel sites XX BS TCAGCTGTCA; R00012; 3; 10;; p. BS CCACCTGTTC; R00014; -2; 10;; n. BS GCACCTGTCC; R00019; 7; 10;; p. BS ACACCTGCTG; R00242; 5; 10;; p. BS CCGCCTGCGT; R00336; 3; 10;; n. BS ACCCGTGACC; R00441; 2; 10;; p. BS CCCCGTGACC; R00443; -1; 10;; p. BS CCACGTCACC; R00693; 8; 10;; p. BS CTACGTCACG; R00711; 4; 10;; n. BS GCACATGATT; R00844; -3; 10;; n. BS CCACCTGCCT; R00881; -1; 10;; n. BS CCATCTGCCT; R00900; 2; 10;; p. BS CCACGTGACC; R00994; 3; 10;; p. BS CCACGTGTTC; R01583; 2; 10;; p. BS ACACGTGATC; R01697; 2; 10;; n. BS CCACGTGACA; R01768; 1; 10;; n. BS CACCATCTCT; R01916; -5; 10;; p. BS ACACATGTCG; R02015; 9; 10;; p. BS CCCCGTGTTG; R02078; 4; 10;; p. BS TCTCTTCCGC; R02082; 6; 10;; p. BS ACCAGTGACC; R02090; 6; 10;; n. BS CCAACTGACC; R02452; 2; 10;; p. BS CCACGTGAGA; R03005; 3; 10;; n. BS GCACCTGCTG; R03074; 2; 10;; n. BS CCAGCTGGCG; R03075; 1; 10;; p. BS GCACCTGTTG; R03076; 2; 10;; n. BS TCACCTGCCT; R03109; -1; 10;; p. BS CCACGTGTGT; R03132; 12; 10;; p. BS TCACCTGACA; R03187; 2; 10;; p. BS GCACCTGTCT; R03330; 7; 10;; p. BS ACACCTGTTA; R03471; 1; 10;; n. BS CCACATGGGA; R03501; -1; 10;; p. BS CCTCGTGACT; R03990; 6; 10;; n. BS CCATCTGTCC; R04020; 3; 10;; p. BS ACAGCTGACA; R04021; 18; 10;; p. BS GCAGATGTCC; R04046; 17; 10;; n. BS TCCCATTCTC; R04351; 2; 10;; p. BS CCACGTGAGA; R04378; 9; 10;; p. BS TCAGCTGACT; R04408; 6; 10;; p. BS CCACCTGCTG; R04418; 10; 10;; p. BS TCCCGTGGTT; R04419; 12; 10;; p. BS CCACGTGATG; R04420; 13; 10;; p. BS CCACGTGAGA; R04433; 16; 10;; n. BS TCACGTGTCC; R04436; 6; 10;; p. BS CCCCATGACC; R04437; 5; 10;; n. BS CCACATGGCC; R04438; 3; 10;; n. BS TCACGTGATT; R04439; 8; 10;; p. BS CCACCTGGCC; R04455; 4; 10;; p. BS CCACGTGGCC; R04462; 3; 10;; p. BS CCACGTGGTC; R08471; -3; 10;; n. BS CCAGATGGCA; R08512; -3; 10;; n. BS CCACGTGTCG; R08887; -1; 10;; p. BS CCACGTGTCC; R08888; -3; 10;; n. BS GCACGTGACT; R08889; -3; 10;; n. BS CCACGTGACC; R08891; -3; 10;; n. BS TCACGTGTCC; R08892; -1; 10;; p. BS TCACGTGTCC; R08893; -1; 10;; p. BS GCACGTGACT; R08895; -3; 10;; n. BS ACACGTGACC; R08897; -3; 10;; n. BS GCACGTGACC; R08899; -3; 10;; n. BS CCACCTGTCT; R09477; -1; 10;; p. BS ACACCGTCTC; R09480; -1; 10;; p. BS CCACGTGCGC; R09484; -3; 10;; n. BS GCACGTGGTG; R09493; -3; 10;; n. BS CCACGTGTCG; R09539; -1; 10;; p. BS ACACGTGTCA; R09544; -1; 10;; p. BS CCACGTGACC; R09594; 3; 10;; p. BS CCACGTGACG; R09595; 1; 10;; n. BS TCACCTGGCC; R12986; 17; 10;; n. BS TCACCTGCTG; R13028; -2; 10;; n. BS CCTCCTGCCT; R13030; 7; 10;; p. BS CCACCTGACA; R13165; 18; 10;; p. BS CCACGTGGGT; R13312; 7; 10;; p. BS CCTCGTGACA; R13313; 6; 10;; p. BS GCACCTGGGC; R13322; 8; 10;; n. BS CCACGTGCTT; R13379; 14; 10;; n. BS CCACGTGCTT; R13575; 25; 10;; n. BS CCACGTGACC; R14387; 5; 10;; p. BS CCATCTGATG; R14467; 4; 10;; n. BS CCATCTGCCC; R14468; 8; 10;; p. BS CCACCTGTTC; R14484; 5; 10;; n. BS GCACGTGAGC; R14531; 7; 10;; p. BS CCAACTGAAG; R14561; 7; 10;; p. BS TCACTTGGCT; R14562; 7; 10;; p. BS TCACATGAGC; R14563; 5; 10;; n. BS CCACGTGCAG; R14604; 6; 10;; p. BS GCAGATGGTG; R14618; 8; 10;; p. BS TCACGTAACT; R14821; 7; 10;; p. BS TCATATGACA; R14825; 6; 10;; p. BS GCAGTTGCTG; R14856; 4; 10;; p. BS GCAGCTGACA; R14857; 8; 10;; n. BS CCAGCTGTTG; R14858; 11; 10;; p. BS CCAGCTGTCT; R14863; 8; 10;; n. BS GCAGCTGTTC; R14864; 20; 10;; n. BS GCACATGACT; R15421; 10; 10;; n. BS GCACATGACT; R15422; 7; 10;; n. BS TCACATGTTT; R15424; 12; 10;; n. BS ACACTTGTAT; R15425; 5; 10;; n. BS GCACATGACT; R15430; 7; 10;; n. BS TCACATGTCT; R15438; 9; 10;; n. BS CCAACTGACC; C00028, s00039; -1; 10;; p. BS CCACATGTCT; C00034, s00041; -1; 10;; n. BS ACACCTGCAG; C00031, s00044; 4; 10;; p. BS GCAGCTGGCA; C00032, s00046; 2; 10;; p. BS ACACCTGCTG; C00034, s00050; 2; 10;; p. BS ACACCTGCAG; C00035, s00051; -1; 10;; p. BS CCACATGACC; C00035, s00052; -3; 10;; n. BS CCACGTGGCT; C00119, s00174; -2; 10;; n. BS CCAGATGGGC; C00120, s00177; -3; 10;; n. BS CCACATGACC; C00170, s00275; -5; 10;; n. BS CCACATGACC; C00171, s00275; -5; 10;; n. BS CCACATGACC; C00253, s00275; -5; 10;; n. BS TCACGTGGCT; C00198, s00329; -1; 10;; p. BS TCACGTGGCC; C00233, s00393; -1; 10;; p. BS CCACGTGACG; C00245, s00416; -1; 10;; p. BS ACATCTGTTG; C00248, s00418; -1; 10;; p. BS TCTGCTGACC; C00261, s00440; 2; 10;; p. BS GCACCTGGTC; C00288, s00498; 13; 10;; n. BS GCACCTGGGG; C00374, s00651; -2; 10;; n. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01035 XX ID V$YY1_Q6_02 XX DT 18.02.2005 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA YY1 XX BF T00283; factor delta; Species: mouse, Mus musculus. BF T00275; YY1; Species: chick, Gallus gallus. BF T00278; YY1; Species: mouse, Mus musculus. BF T00865; YY1; Species: mouse, Mus musculus. BF T00915; YY1; Species: human, Homo sapiens. BF T04970; YY1; Species: rat, Rattus norvegicus. XX P0 A C G T 01 7 9 11 8 N 02 5 17 3 10 Y 03 5 15 8 7 N 04 4 2 19 10 K 05 1 31 1 2 C 06 0 35 0 0 C 07 34 0 0 1 A 08 1 0 3 31 T 09 7 8 7 13 N 10 6 3 2 24 T 11 5 4 6 20 T XX BA 35 compiled sequences including 3 TRANSCompel sites XX BS GTCGCCATATT; R00034; 4; 11;; n. BS GTCGCCATATT; R00035; 4; 11;; n. BS GCTGCCATCAT; R00284; 5; 11;; p. BS TCGGCCATCTT; R00848; 5; 11;; n. BS AACGCCATTTT; R01149; -2; 11;; p. BS CCGACCATTTT; R01161; 5; 11;; n. BS GCTGCCATCTG; R01329; 1; 11;; p. BS GCGGCCATCCG; R01330; 1; 11;; p. BS CCGGCCATCTT; R01833; 1; 11;; p. BS TACGCCATGTA; R02999; 7; 11;; n. BS CAAGCCATATT; R03000; 7; 11;; n. BS GCAGCCATCTT; R03002; 3; 11;; p. BS TGCGACATTTT; R03174; 5; 11;; p. BS GTCTCCATTTT; R03175; 4; 11;; p. BS GTCTCCAGAAA; R03177; 2; 11;; p. BS AGCTCCATTTT; R03321; 2; 11;; n. BS GCCTCCATGGT; R04077; -2; 11;; n. BS AGCGCCATCTT; R04776; 5; 11;; n. BS GAAACCATTTT; R04898; 8; 11;; p. BS CCCACCATGTC; R04906; 1; 11;; n. BS ACGTCCATGTG; R09521; 7; 11;; p. BS GTCGCCATGAC; R11726; 13; 11;; n. BS TAAGGCATTTG; R13417; 4; 11;; p. BS ACTTCCTGTCT; R13420; 9; 11;; p. BS CTTTCCATGCC; R13421; 12; 11;; n. BS TCTTCCATTAA; R13424; 6; 11;; n. BS TTCCCCAGTAG; R13425; 4; 11;; p. BS TCTGTCATTTT; R14736; 7; 11;; p. BS ATATTCATTTT; R14737; 7; 11;; p. BS TTTCCCATAAT; R14870; 6; 11;; n. BS CCGGCCATCTA; R16079; 9; 11;; n. BS CCGGCCAAATA; R16080; 1; 11;; p. BS ATGTCCATATT; C00009, s00014; -1; 11;; p. BS CCCACCATGTC; C00054, s00081; 3; 11;; n. BS CCCGCCATTGG; C00212, s00354; -4; 11;; p. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01036 XX ID V$COUPTF_Q6 XX DT 18.02.2005 (created); dtc. CO Copyright (C), Biobase GmbH. XX NA COUPTF XX BF T00147; COUP; Species: rat, Rattus norvegicus. BF T02761; COUP; Species: clawed frog, Xenopus laevis. BF T00148; COUP-TF1; Species: chick, Gallus gallus. BF T00149; COUP-TF1; Species: human, Homo sapiens. BF T00994; COUP-TF1; Species: mouse, Mus musculus. BF T06153; COUP-TF1; Species: cattle, Bos taurus. BF T00045; COUP-TF2; Species: human, Homo sapiens. BF T06155; COUP-TF2; Species: chick, Gallus gallus. BF T06154; COUP-TF2; Species: mouse, Mus musculus. BF T06156; COUP-TF2; Species: rat, Rattus norvegicus. XX P0 A C G T 01 1 9 7 9 N 02 3 10 6 7 N 03 6 9 6 5 N 04 4 9 7 6 N 05 5 10 8 3 N 06 1 1 1 23 T 07 1 0 25 0 G 08 18 4 4 0 A 09 5 18 0 3 C 10 0 26 0 0 C 11 0 9 0 17 Y 12 0 7 2 17 T 13 3 1 3 19 T 14 6 6 14 0 G 15 6 11 7 2 N 16 9 12 2 3 M 17 3 19 3 1 C 18 5 7 6 8 N 19 2 13 2 9 Y 20 2 5 7 12 N 21 4 4 13 5 G 22 8 15 1 2 M 23 4 10 4 8 N XX BA 26 compiled sequences including 5 TRANSCompel sites XX BS CCCCCTGACCCCTGGACTTTGCT; R00912; -6; 23;; n. BS AGAGCTGATCCTTGAACTCTTAA; R02960; -5; 23;; p. BS GTCACTGCTCCTTAACCTCTTTT; R03318; -1; 23;; n. BS TCCACTGACCTTTGGATGGTGCT; R03405; -2; 23;; p. BS CCTCCTGACCCGACCCAGTTGCC; R08505; 2; 23;; n. BS CCATGAGACCCCTAAAGACCTAC; R08506; 4; 23;; n. BS TCTCTTGAACTTTGAACTTCCAC; R08877; -2; 23;; p. BS TCTCATGACCTTTGGCCGTGGGA; R12074; -5; 23;; p. BS GACTATGGACTTAGTTCAAGGCC; R13073; -2; 23;; p. BS CCGGGTGGCCCCTACCCCTGGCG; R13208; -1; 23;; p. BS CTGTCTGACCTCTCGACCCTACC; R13209; -3; 23;; p. BS GGCGGTGACCTTGACCCCAGCCC; R14239; 2; 23;; p. BS TACCTTGACCTGTGACACTTAAG; R14384; -4; 23;; n. BS TCCCCTGCCCTCTGCCCTCTGCA; R15841; 18; 23;; p. BS TTCTGGGAACCTTGGCCCCGACT; R15842; 4; 23;; p. BS GGAGGTGACCCTGAACCGCCCAT; R15843; -4; 23;; p. BS TGCCCTGCACTTCCTGGGCCGCG; R15844; 15; 23;; p. BS GATGATGGCCTTTGCCCTCTGCT; R15898; 10; 23;; n. BS CTGCATAACCTTTGCTAGCAGAT; R15902; -2; 23;; n. BS CTAATCGACCTTACCACTTTCAC; R15904; 12; 23;; p. BS GGTTATGATCTTTCCACTTATAC; R16068; 1; 23;; p. BS GCAGGTGACCTTTGCCCAGCGCC; C00018, s00022; -5; 23;; p. BS CCGGGTGGCCCCTACCCCTGGCG; C00124, s00185; 15; 23;; p. BS CTGTCTGACCTCTCGACCCTACC; C00125, s00187; -3; 23;; p. BS TGACGTGACCTTGGGGGACGTCA; C00285, s00490; -2; 23;; p. BS TTGACTGCACTTTGCTCACTGTT; C00290, s00502; 1; 23;; p. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01037 XX ID V$GLI_Q2 XX DT 18.02.2005 (created); dtc. DT 02.03.2005 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA GLI XX BF T00330; GLI1; Species: human, Homo sapiens. BF T06385; Gli1; Species: mouse, Mus musculus. BF T06386; Gli2; Species: mouse, Mus musculus. BF T04961; GLI2alpha; Species: human, Homo sapiens. BF T00331; GLI3; Species: human, Homo sapiens. BF T06387; Gli3; Species: mouse, Mus musculus. BF T06390; GliH1; Species: mouse, Mus musculus. XX P0 A C G T 01 4 5 1 5 N 02 0 5 5 5 B 03 0 1 0 14 T 04 0 0 12 3 G 05 0 0 15 0 G 06 0 0 15 0 G 07 2 0 1 12 T 08 0 0 14 1 G 09 0 0 13 2 G 10 1 1 1 12 T 11 0 12 2 1 C 12 1 7 4 3 N XX BA 15 compiled sequences XX BS CTTGGGTGTTCC; R16133; 12; 12;; n. BS ATTGGGTGGTGG; R16134; 12; 12;; n. BS ACTGGGTGGACT; R16135; 12; 12;; n. BS TGTGGGGGGTCA; R16136; 12; 12;; n. BS TCTGGGAGGTCT; R16138; 12; 12;; n. BS GTTTGGTGGTCC; R16139; 12; 12;; n. BS TCTGGGAGGTCC; R16152; 12; 12;; n. BS CTTGGGTTGTTC; R16155; 25; 12;; n. BS ACTTGGTGGTCG; R16158; 11; 12;; n. BS CGTGGGTGTGCG; R16159; 11; 12;; n. BS AGTGGGTGGCGC; R16160; 11; 12;; n. BS CGCGGGTGGTCC; R16191; 10; 12;; p. BS CTTGGGTGGTCC; R16192; 4; 12;; n. BS TGTGGGTGGTCT; R16193; 4; 12;; n. BS TCTTGGTGGTCG; R16296; 10; 12;; n. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01043 XX ID V$NKX25_Q5 XX DT 18.02.2005 (created); dtc. DT 02.03.2005 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA NKX25 XX BF T01675; Nkx2-5; Species: mouse, Mus musculus. BF T04323; Nkx2-5; Species: human, Homo sapiens. BF T04330; Nkx2-5; Species: clawed frog, Xenopus laevis. BF T04334; Nkx2-5; Species: chick, Gallus gallus. BF T06362; Nkx2.5; Species: rat, Rattus norvegicus. XX P0 A C G T 01 1 4 0 8 T 02 1 5 5 2 S 03 0 7 1 5 Y 04 0 13 0 0 C 05 13 0 0 0 A 06 0 13 0 0 C 07 0 0 0 13 T 08 0 0 0 13 T 09 0 5 7 1 S 10 7 5 1 0 M XX BA 13 compiled sequences XX BS TCCCACTTCA; R15799; 12; 10;; n. BS CCCCACTTCA; R15801; 12; 10;; n. BS CCCCACTTCA; R15804; 12; 10;; n. BS TCCCACTTCA; R15807; 11; 10;; n. BS TTCCACTTGA; R15847; 8; 10;; p. BS CACCACTTTG; R15867; 13; 10;; n. BS CCCCACTTCA; R15968; 12; 10;; n. BS TGTCACTTGC; R16044; 3; 10;; n. BS TGTCACTTGC; R16045; 3; 10;; n. BS TGTCACTTGC; R16046; 3; 10;; n. BS TGTCACTTGC; R16047; 3; 10;; n. BS ATGCACTTGA; R16056; 13; 10;; n. BS TGTCACTTGC; R16101; 2; 10;; n. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01044 XX ID V$TBX5_Q5 XX DT 18.02.2005 (created); dtc. DT 02.03.2005 (updated); dtc. CO Copyright (C), Biobase GmbH. XX NA TBX5 XX BF T04347; Tbx5; Species: mouse, Mus musculus. BF T04348; Tbx5; Species: chick, Gallus gallus. BF T04422; Tbx5; Species: clawed frog, Xenopus laevis. BF T04345; TBX5 (long isoform); Species: human, Homo sapiens. XX P0 A C G T 01 1 5 0 2 C 02 0 0 0 8 T 03 0 8 0 0 C 04 8 0 0 0 A 05 0 8 0 0 C 06 8 0 0 0 A 07 0 8 0 0 C 08 0 8 0 0 C 09 0 0 0 8 T 10 1 0 2 5 T XX BA 8 compiled sequences XX BS ATCACACCTG; R15769; 4; 10;; p. BS TTCACACCTG; R15775; 3; 10;; n. BS CTCACACCTT; R15780; 2; 10;; p. BS CTCACACCTT; R15785; 2; 10;; p. BS CTCACACCTT; R15788; 2; 10;; p. BS TTCACACCTA; R15827; 15; 10;; n. BS CTCACACCTT; R15837; 6; 10;; p. BS CTCACACCTT; R15969; 10; 10;; p. XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). XX // AC M01045 XX ID V$AP2ALPHA_02 XX DT 03.03.2005 (created); elf. DT 21.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AP-2alphaA XX BF T00035; AP-2alphaA; Species: human, Homo sapiens. XX P0 A C G T 01 39 11 9 11 A 02 20 22 10 18 N 03 16 32 2 20 N 04 0 0 70 0 G 05 0 70 0 0 C 06 0 70 0 0 C 07 0 21 4 45 T 08 5 22 24 19 N 09 45 9 16 0 A 10 9 0 61 0 G 11 0 0 70 0 G 12 0 31 39 0 S 13 5 20 31 14 N 14 28 16 16 10 N 15 6 17 10 37 T XX BA 70 selected sequences XX BS ACCGCCCCAGGCGCC; R16376; 2; 15;; p. BS ACCGCCTGAGGCTCA; R16377; 2; 15;; p. BS ACCGCCTAAGGCGTA; R16378; 2; 15;; p. BS ACCGCCTTAGGCATC; R16379; 2; 15;; p. BS ACCGCCCGAGGCGCT; R16380; 2; 15;; p. BS ACCGCCCGAGGCTGT; R16381; 2; 15;; p. BS ACCGCCTGAGGCGGT; R16382; 2; 15;; p. BS ACCGCCTTAGGCTAT; R16383; 2; 15;; p. BS ACCGCCCTAGGCGTT; R16384; 2; 15;; p. BS ACCGCCGCGGGCGGT; R16385; 2; 15;; p. BS ACCGCCGGAGGCTAT; R16386; 2; 15;; p. BS CCCGCCTCGGGCTAT; R16387; 3; 15;; p. BS CCAGCCTCAGGCGAC; R16388; 3; 15;; p. BS CCCGCCTGCGGCGTT; R16389; 3; 15;; p. BS CCTGCCTCAGGCTAT; R16390; 3; 15;; p. BS CTAGCCTCAGGCGAT; R16391; 4; 15;; p. BS CTCGCCTGAGGCGTT; R16392; 4; 15;; p. BS CATGCCTTAGGCTAT; R16393; 4; 15;; p. BS ACCGCCTCCGGCGAT; R16394; 5; 15;; p. BS ACTGCCTCAGGCGTT; R16395; 5; 15;; p. BS AGCGCCTGAGGCACA; R16396; 5; 15;; p. BS TATGCCGCGGGCTAT; R16397; 5; 15;; p. BS ATAGCCTTAGGCACC; R16398; 7; 15;; p. BS ATCGCCTTAGGCTCC; R16399; 7; 15;; p. BS ATCGCCTGAGGCAAC; R16400; 7; 15;; p. BS GTAGCCTGAGGCTAC; R16401; 7; 15;; p. BS GTCGCCTGGGGCACT; R16402; 8; 15;; p. BS ATAGCCTGAGGCGCT; R16403; 8; 15;; p. BS TACGCCCCAGGCTCG; R16404; 10; 15;; p. BS ATAGCCTTAGGCTCG; R16405; 10; 15;; p. BS ACCGCCTTAGGCTCG; R16406; 10; 15;; p. BS ACCGCCTAAGGGCAC; R16407; 2; 15;; p. BS ACCGCCTTAGGGCTT; R16408; 2; 15;; p. BS ATTGCCTCAGGGCAT; R16409; 5; 15;; p. BS TCCGCCGGAGGGCAT; R16410; 6; 15;; p. BS ATCGCCCCGGGGCAT; R16411; 6; 15;; p. BS TATGCCCGCGGGCTC; R16412; 9; 15;; p. BS TATGCCTTCGGGCGG; R16413; 8; 15;; p. BS TATGCCTAAGGGCAT; R16414; 6; 15;; p. BS GACGCCTGAGGGCAC; R16415; 5; 15;; p. BS TAAGCCTGAGGGCAT; R16416; 5; 15;; p. BS GACGCCTCGGGGCAA; R16417; 4; 15;; p. BS GTCGCCTGAGGGCAC; R16418; 4; 15;; p. BS AGCGCCTCAGGGCAC; R16419; 3; 15;; p. BS AGGGCCTAAGGGCAT; R16420; 3; 15;; p. BS AGTGCCTTAGGGCGA; R16421; 3; 15;; p. BS AGCGCCTGAGGGCAC; R16422; 3; 15;; p. BS GAGGCCTAAGGGCAT; R16423; 2; 15;; p. BS CGAGCCTCCGGGCAT; R16424; 1; 15;; p. BS CGAGCCTTAGGGCAT; R16425; 1; 15;; p. BS CGAGCCTGCGGGCAT; R16426; 1; 15;; p. BS AGAGCCCGGAGGGCA; R16427; 3; 15;; p. BS TATGCCCTGGGGGCC; R16428; 5; 15;; p. BS ATAGCCTGAGGGGCT; R16429; 8; 15;; p. BS GATGCCCTGGGGGCT; R16430; 8; 15;; p. BS GATGCCCTCGGGGCT; R16431; 8; 15;; p. BS AATGCCCTGAGGGGC; R16432; 7; 15;; p. BS ATAGCCTGAGGGGTC; R16433; 10; 15;; p. BS ATAGCCTCAGGGGTC; R16434; 10; 15;; p. BS ATCGCCCCGGGGGGT; R16435; 9; 15;; p. BS TATGCCCCGAGGGGT; R16436; 9; 15;; p. BS ATAGCCTGAGGGGGT; R16437; 9; 15;; p. BS TATGCCCCCAGGGGT; R16438; 9; 15;; p. BS ATAGCCCCAGGGGGG; R16439; 8; 15;; p. BS AATGCCCTAAGGGGG; R16440; 8; 15;; p. BS TATGCCCCCAGGGGG; R16441; 8; 15;; p. BS GATGCCCTGAGGGGG; R16442; 8; 15;; p. BS CATGCCCTGAGGGGG; R16443; 7; 15;; p. BS AGTGCCCGGAGGGGG; R16444; 3; 15;; p. BS ACCGCCTCGGGGTAT; R16445; 2; 15;; p. XX CC binding site selection assay: sites were selected from a pool of double-stranded oligonucleotides with a randomized N16 core, four rounds of selection and amplification [2] XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). RN [2]; RE0025497. RX PUBMED: 10373594. RA Mohibullah N., Donner A., Ippolito J. A., Williams T. RT SELEX and missing phosphate contact analyses reveal flexibility within the AP-2[alpha] protein: DNA binding complex. RL Nucleic Acids Res. 27:2760-2769 (1999). XX // AC M01047 XX ID V$AP2ALPHA_03 XX DT 04.03.2005 (created); elf. DT 21.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA AP-2alphaA XX BF T00035; AP-2alphaA; Species: human, Homo sapiens. XX P0 A C G T 01 38 10 9 5 A 02 9 21 12 20 N 03 19 34 0 9 M 04 0 0 62 0 G 05 0 62 0 0 C 06 0 62 0 0 C 07 0 9 5 48 T 08 9 22 22 9 N 09 48 5 9 0 A 10 0 0 62 0 G 11 0 0 62 0 G 12 0 62 0 0 C 13 9 0 34 19 K 14 20 12 21 9 N 15 5 9 10 38 T XX BA 62 sequences (31 of the selected sequences from M01045, which contained a GCCNNNGGC, used in both orientations) XX BS ACCGCCCCAGGCGCC; R16376; 2; 15;; p. BS GGCGCCTGGGGCGGT; R16376; 2; 15;; n. BS ACCGCCTGAGGCTCA; R16377; 2; 15;; p. BS TGAGCCTCAGGCGGT; R16377; 2; 15;; n. BS ACCGCCTAAGGCGTA; R16378; 2; 15;; p. BS TACGCCTTAGGCGGT; R16378; 2; 15;; n. BS ACCGCCTTAGGCATC; R16379; 2; 15;; p. BS GATGCCTAAGGCGGT; R16379; 2; 15;; n. BS ACCGCCCGAGGCGCT; R16380; 2; 15;; p. BS AGCGCCTCGGGCGGT; R16380; 2; 15;; n. BS ACCGCCCGAGGCTGT; R16381; 2; 15;; p. BS ACAGCCTCGGGCGGT; R16381; 2; 15;; n. BS ACCGCCTGAGGCGGT; R16382; 2; 15;; p. BS ACCGCCTCAGGCGGT; R16382; 2; 15;; n. BS ACCGCCTTAGGCTAT; R16383; 2; 15;; p. BS ATAGCCTAAGGCGGT; R16383; 2; 15;; n. BS ACCGCCCTAGGCGTT; R16384; 2; 15;; p. BS AACGCCTAGGGCGGT; R16384; 2; 15;; n. BS ACCGCCGCGGGCGGT; R16385; 2; 15;; p. BS ACCGCCCGCGGCGGT; R16385; 2; 15;; n. BS ACCGCCGGAGGCTAT; R16386; 2; 15;; p. BS ATAGCCTCCGGCGGT; R16386; 2; 15;; n. BS CCCGCCTCGGGCTAT; R16387; 3; 15;; p. BS ATAGCCCGAGGCGGG; R16387; 3; 15;; n. BS CCAGCCTCAGGCGAC; R16388; 3; 15;; p. BS GTCGCCTGAGGCTGG; R16388; 3; 15;; n. BS CCCGCCTGCGGCGTT; R16389; 3; 15;; p. BS AACGCCGCAGGCGGG; R16389; 3; 15;; n. BS CCTGCCTCAGGCTAT; R16390; 3; 15;; p. BS ATAGCCTGAGGCAGG; R16390; 3; 15;; n. BS CTAGCCTCAGGCGAT; R16391; 4; 15;; p. BS ATCGCCTGAGGCTAG; R16391; 4; 15;; n. BS CTCGCCTGAGGCGTT; R16392; 4; 15;; p. BS AACGCCTCAGGCGAG; R16392; 4; 15;; n. BS CATGCCTTAGGCTAT; R16393; 4; 15;; p. BS ATAGCCTAAGGCATG; R16393; 4; 15;; n. BS ACCGCCTCCGGCGAT; R16394; 5; 15;; p. BS ATCGCCGGAGGCGGT; R16394; 5; 15;; n. BS ACTGCCTCAGGCGTT; R16395; 5; 15;; p. BS AACGCCTGAGGCAGT; R16395; 5; 15;; n. BS AGCGCCTGAGGCACA; R16396; 5; 15;; p. BS TGTGCCTCAGGCGCT; R16396; 5; 15;; n. BS TATGCCGCGGGCTAT; R16397; 5; 15;; p. BS ATAGCCCGCGGCATA; R16397; 5; 15;; n. BS ATAGCCTTAGGCACC; R16398; 7; 15;; p. BS GGTGCCTAAGGCTAT; R16398; 7; 15;; n. BS ATCGCCTTAGGCTCC; R16399; 7; 15;; p. BS GGAGCCTAAGGCGAT; R16399; 7; 15;; n. BS ATCGCCTGAGGCAAC; R16400; 7; 15;; p. BS GTTGCCTCAGGCGAT; R16400; 7; 15;; n. BS GTAGCCTGAGGCTAC; R16401; 7; 15;; p. BS GTAGCCTCAGGCTAC; R16401; 7; 15;; n. BS GTCGCCTGGGGCACT; R16402; 8; 15;; p. BS AGTGCCCCAGGCGAC; R16402; 8; 15;; n. BS ATAGCCTGAGGCGCT; R16403; 8; 15;; p. BS AGCGCCTCAGGCTAT; R16403; 8; 15;; n. BS TACGCCCCAGGCTCG; R16404; 10; 15;; p. BS CGAGCCTGGGGCGTA; R16404; 10; 15;; n. BS ATAGCCTTAGGCTCG; R16405; 10; 15;; p. BS CGAGCCTAAGGCTAT; R16405; 10; 15;; n. BS ACCGCCTTAGGCTCG; R16406; 10; 15;; p. BS CGAGCCTAAGGCGGT; R16406; 10; 15;; n. XX CC binding site selection assay: sites were selected from a pool of double-stranded oligonucleotides with a randomized N16 core, four rounds of selection and amplification [2] XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). RN [2]; RE0025497. RX PUBMED: 10373594. RA Mohibullah N., Donner A., Ippolito J. A., Williams T. RT SELEX and missing phosphate contact analyses reveal flexibility within the AP-2[alpha] protein: DNA binding complex. RL Nucleic Acids Res. 27:2760-2769 (1999). XX // AC M01048 XX ID N$TRA1_01 XX DT 05.03.2005 (created); vma. DT 21.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Tra-1 XX BF T00842; Tra-1 (long form); Species: Caenorhabditis elegans. XX P0 A C G T 01 4 3 1 15 T 02 1 0 19 3 G 03 0 0 23 0 G 04 0 0 20 3 G 05 10 1 3 9 W 06 0 0 23 0 G 07 0 0 23 0 G 08 0 3 3 17 T XX BA 23 selected sequences XX BS AGGGTGGG; R16244; 18; 8;; p. BS CGGGTGGG; R16245; 23; 8;; p. BS TGGGTGGT; R16246; 23; 8;; p. BS TGGTAGGT; R16247; 20; 8;; p. BS TGGGTGGT; R16248; 22; 8;; p. BS TTGGAGGT; R16249; 17; 8;; p. BS AGGGCGGT; R16250; 23; 8;; p. BS CGGTGGGT; R16251; 11; 8;; p. BS ATGGAGGT; R16252; 12; 8;; p. BS TTGGGGGT; R16253; 13; 8;; p. BS CGGGTGGC; R16254; 11; 8;; p. BS TAGGTGGT; R16255; 25; 8;; p. BS GGGGAGGT; R16256; 14; 8;; p. BS TGGGAGGT; R16257; 11; 8;; p. BS TGGGTGGC; R16258; 18; 8;; p. BS TGGTGGGT; R16259; 20; 8;; p. BS TGGGAGGT; R16260; 25; 8;; p. BS TGGGTGGG; R16261; 16; 8;; p. BS TGGGAGGT; R16262; 11; 8;; p. BS AGGGAGGT; R16263; 26; 8;; p. BS TGGGAGGT; R16264; 13; 8;; p. BS TGGGAGGT; R16265; 20; 8;; p. BS TGGGTGGC; R16266; 20; 8;; p. XX CC random oligonucleotide selection assay with a fusion protein containing the N-terminus and the 5 zinc fingers of Tra-1, 4 rounds of selection [2] XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). RN [2]; RE0008730. RX PUBMED: 8367286. RA Zarkower D., Hodgkin J. RT Zinc fingers in sex determination: only one of the two C. elegans Tra-1 proteins binds DNA in vitro RL Nucleic Acids Res. 21:3691-3698 (1993). XX // AC M01049 XX ID N$TRA1_02 XX DT 05.03.2005 (created); vma. DT 21.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA Tra-1 XX BF T00842; Tra-1 (long form); Species: Caenorhabditis elegans. XX P0 A C G T 01 1 3 1 14 T 02 1 0 15 3 G 03 0 1 13 5 G 04 0 0 17 2 G 05 5 0 4 10 W 06 0 0 19 0 G 07 0 0 19 0 G 08 0 2 1 16 T XX BA 19 selected sequences XX BS TGGGAGGT; R16267; 18; 8;; p. BS CGGGGGGT; R16268; 11; 8;; p. BS TGGGTGGT; R16269; 12; 8;; p. BS TGTGTGGT; R16270; 21; 8;; p. BS TGGGTGGT; R16271; 17; 8;; p. BS TGGGGGGT; R16272; 18; 8;; p. BS TGTGTGGT; R16273; 22; 8;; p. BS TGTGGGGT; R16274; 19; 8;; p. BS TGTGTGGT; R16275; 10; 8;; p. BS TGCGTGGG; R16276; 22; 8;; p. BS CGGTGGGT; R16277; 25; 8;; p. BS TGGGAGGT; R16278; 20; 8;; p. BS TGGGTGGT; R16279; 20; 8;; p. BS TGGGAGGT; R16280; 11; 8;; p. BS GTGGAGGT; R16281; 20; 8;; p. BS CTGGTGGT; R16282; 25; 8;; p. BS TAGGTGGC; R16283; 19; 8;; p. BS ATGTAGGT; R16284; 18; 8;; p. BS TGTGTGGC; R16285; 21; 8;; p. XX CC random oligonucleotide selection assay with a fusion protein containing the N-terminus and the 5 zinc fingers of Tra-1, 5 rounds of selection [2] XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). RN [2]; RE0008730. RX PUBMED: 8367286. RA Zarkower D., Hodgkin J. RT Zinc fingers in sex determination: only one of the two C. elegans Tra-1 proteins binds DNA in vitro RL Nucleic Acids Res. 21:3691-3698 (1993). XX // AC M01050 XX ID P$ARR10_01 XX DT 06.03.2005 (created); vma. DT 25.07.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ARR10 XX BF T05459; ARR10; Species: thale cress, Arabidopsis thaliana. BF T05654; ARR10; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 15 0 0 0 A 02 0 0 15 0 G 03 15 0 0 0 A 04 0 0 0 15 T 05 4 6 0 5 H 06 0 9 0 6 Y 07 0 0 9 6 K XX BA 15 selected sequences (random binding site selection assay) XX BS AGATACG; R16449; 9; 7;; p. BS AGATACG; R16450; 9; 7;; p. BS AGATACG; R16451; 9; 7;; p. BS AGATACG; R16452; 9; 7;; p. BS AGATTCG; R16453; 9; 7;; p. BS AGATTCG; R16454; 9; 7;; p. BS AGATTCG; R16455; 9; 7;; p. BS AGATTCG; R16456; 9; 7;; p. BS AGATTCG; R16457; 9; 7;; p. BS AGATCTT; R16458; 9; 7;; p. BS AGATCTT; R16459; 9; 7;; p. BS AGATCTT; R16460; 9; 7;; p. BS AGATCTT; R16461; 9; 7;; p. BS AGATCTT; R16462; 9; 7;; p. BS AGATCTT; R16463; 9; 7;; p. XX CC sequences were selected by ARR10-RB Ni bead complexes from a pool of oligonucleotides with a randomized N16 core, 7 rounds of selection and amplification [2] XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). RN [2]; RE0025501. RX PUBMED: 12215502. RA Hosoda K., Imamura A., Katoh E., Hatta T., Tachiki M., Yamada H., Mizuno T., Yamazaki T. RT Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators. RL Plant Cell 14:2015-2029 (2002). XX // AC M01051 XX ID F$MCM1_02 XX DT 11.03.2005 (created); vma. DT 21.03.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA MCM1+SFF XX BF T00500; MCM1; Species: yeast, Saccharomyces cerevisiae. XX P0 A C G T 01 5 4 3 23 T 02 5 4 3 23 T 03 11 0 7 17 W 04 0 32 0 3 C 05 0 33 1 2 C 06 5 14 3 13 Y 07 25 2 6 2 A 08 26 1 2 6 A 09 18 1 0 16 W 10 8 7 7 13 N 11 17 3 8 7 N 12 2 0 33 0 G 13 0 0 34 1 G 14 21 4 3 7 A 15 32 0 0 3 A 16 33 1 0 1 A 17 21 0 3 11 W 18 22 0 2 11 W 19 7 7 5 8 N 20 8 4 20 3 G 21 6 2 2 25 T 22 24 8 0 3 A 23 33 0 0 2 A 24 34 0 1 0 A 25 0 20 0 15 Y 26 34 0 1 0 A 27 26 1 4 4 A XX BA 35 compiled sequences XX CC matrix built from promoter elements of several coregulated genes found in the CLB2 cluster [2] XX RN [1]; RE0025480. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel91:0001 (2005). RN [2]; RE0017988. RX PUBMED: 9843569. RA Spellman P. T., Sherlock G., Zhang M. Q., Iyer V. R., Anders K., Eisen M. B., Brown P. O., Botstein D., Futcher B. RT Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. RL Mol. Biol. Cell 9:3273-3297 (1998). XX // AC M01052 XX ID P$MYB80_01 XX DT 14.03.2005 (created); sla. DT 17.03.2005 (updated); sla. CO Copyright (C), Biobase GmbH. XX NA MYB80 XX BF T06533; MYB80; Species: wheat, Triticum aestivum. XX P0 A C G T 01 3 5 11 3 N 02 2 5 15 0 G 03 0 0 22 0 G 04 14 2 2 4 A 05 22 0 0 0 A 06 0 0 0 22 T 07 22 0 0 0 A 08 0 0 0 22 T 09 4 8 7 3 N 10 1 21 0 0 C 11 1 9 7 5 N XX BA 22 sequences selected by random binding site selection XX BS AGGAATATTCT; R16508; 17; 11;; p. BS GGGAATATACC; R16513; 1; 11;; p. BS CGGAATATGCC; R16514; 18; 11;; p. BS GGGAATATGCC; R16515; 16; 11;; p. BS GGGAATATGCC; R16516; 18; 11;; p. BS CGGAATATGCC; R16517; 10; 11;; p. BS ACGAATATCCT; R16518; 4; 11;; p. BS AAGTATATCCG; R16519; 12; 11;; p. BS GAGCATATGCG; R16520; 12; 11;; p. BS GGGAATATTCC; R16521; 19; 11;; p. BS CGGAATATTCG; R16522; 14; 11;; p. BS TGGAATATACC; R16523; 13; 11;; p. BS CGGAATATCCT; R16524; 11; 11;; p. BS TCGAATATCCA; R16525; 12; 11;; p. BS GCGAATATCCG; R16526; 17; 11;; p. BS GGGTATATACC; R16527; 5; 11;; p. BS CCGCATATGCT; R16528; 13; 11;; p. BS GGGTATATCCG; R16529; 2; 11;; p. BS GGGGATATACG; R16530; 13; 11;; p. BS GGGAATATCAC; R16531; 14; 11;; p. BS GCGTATATGCT; R16532; 19; 11;; p. BS TGGGATATCCG; R16533; 9; 11;; p. XX CC random binding site selection: selected with MYB80 from a pool of oliginucleotides with a random 30 bp core (third and fourth round of selection) [1] XX RN [1]; RE0025465. RX PUBMED: 15686526. RA Xue G. P. RT A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins. RL Plant J. 41:638-649 (2005). XX // AC M01054 XX ID P$BHLH66_01 XX DT 14.03.2005 (created); sla. DT 17.03.2005 (updated); sla. CO Copyright (C), Biobase GmbH. XX NA bHLH66 XX BF T06540; bHLH66; Species: rice, Oryza sativa. XX P0 A C G T 01 1 0 7 2 G 02 0 10 0 0 C 03 10 0 0 0 A 04 0 10 0 0 C 05 0 0 10 0 G 06 0 0 0 10 T 07 0 0 10 0 G 08 0 7 2 1 C XX BA 10 sequences selected by random binding site selection XX BS GCACGTGC; R16534; 20; 8;; p. BS GCACGTGC; R16535; 23; 8;; p. BS GCACGTGC; R16536; 11; 8;; p. BS GCACGTGC; R16537; 9; 8;; p. BS TCACGTGC; R16538; 17; 8;; p. BS GCACGTGT; R16539; 12; 8;; p. BS GCACGTGG; R16540; 7; 8;; p. BS TCACGTGC; R16541; 13; 8;; p. BS GCACGTGG; R16542; 17; 8;; p. BS ACACGTGC; R16543; 6; 8;; p. XX CC random binding site selection: selected with bHLH66 from a pool of oligonucleotides with a random 30 bp core (third round of selection) [1] XX RN [1]; RE0025465. RX PUBMED: 15686526. RA Xue G. P. RT A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins. RL Plant J. 41:638-649 (2005). XX // AC M01055 XX ID P$NAC691_01 XX DT 17.03.2005 (created); sla. DT 17.03.2005 (updated); sla. CO Copyright (C), Biobase GmbH. XX NA NAC69-1 XX BF T06532; NAC69-1; Species: wheat, Triticum aestivum. XX P0 A C G T 01 5 0 7 0 R 02 1 0 9 2 G 03 6 1 0 5 W 04 2 0 7 3 G 05 3 3 4 2 N 06 0 12 0 0 C 07 0 0 14 0 G 08 0 0 0 14 T 09 10 0 4 0 A 10 2 5 1 6 Y 11 4 1 6 3 N 12 1 4 5 4 N 13 3 2 6 3 N 14 6 1 4 3 N 15 0 4 0 10 T 16 14 0 0 0 A 17 0 14 0 0 C 18 0 0 14 0 G 19 0 2 2 10 T 20 10 4 0 0 A 21 13 0 0 1 A 22 0 10 0 4 C 23 1 7 0 6 Y XX BA 14 sequences selected by random binding site selection XX BS AGATCCGTGCACAGTACGTAACT; R16494; 2; 23;; p. BS AGTGGCGTATGGTATACGTAACT; R16495; 4; 23;; p. BS GGAGTCGTGTGCGTCACGTAACC; R16496; 1; 23;; p. BS GGAGACGTGTTTCTTACGGCACT; R16497; 7; 23;; p. BS AGAGACGTACCTGACACGGCATC; R16498; 8; 23;; p. BS GGAAGCGTAATGGATACGCAACC; R16499; 2; 23;; p. BS AGTGACGTATGAGGTACGTAATC; R16500; 2; 23;; p. BS AGATGCGTACACGATACGTAACC; R16501; 2; 23;; p. BS GGTTGCGTAAGGTCTACGTATTC; R16502; 1; 23;; p. BS GTTGCCGTACAGTGCACGTCATC; R16503; 6; 23;; p. BS GTATGGAGCACGTAACT; R16504; 1; 23; 1, 2, 3, 4, 5, 6; p. BS GTATGCATTACGCAACT; R16505; 1; 23; 1, 2, 3, 4, 5, 6; p. BS GACGCCGTACATGATACGTCACT; R16506; 1; 23;; p. BS GTTATCGTGGTTCATACGTAACA; R16507; 4; 23;; p. XX CC random binding site selection assay: selected with NAC69-1 from a pool of oligonucleotides with a random 30 bp core (fifth round of selection) [1] XX RN [1]; RE0025465. RX PUBMED: 15686526. RA Xue G. P. RT A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins. RL Plant J. 41:638-649 (2005). XX // AC M01057 XX ID P$ERF2_01 XX DT 26.05.2005 (created); rhe_cga. DT 25.07.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ERF2 XX BF T02654; ERF2; Species: tobacco, Nicotiana tabacum. XX P0 A C G T 01 2 26 1 4 C 02 0 1 31 1 G 03 1 26 6 0 C 04 0 30 2 1 C 05 1 0 32 0 G 06 3 28 2 0 C 07 0 32 1 0 C XX BA 33 selected sequences by random binding site selection assay XX BS AGCCGCC; R16789; 4; 7;; p. BS TGCGGCC; R16790; 2; 7;; p. BS CGCGGCC; R16791; 3; 7;; p. BS CGCCGCC; R16792; 2; 7;; p. BS CGGCGCC; R16793; 4; 7;; p. BS CGGCGCC; R16794; 4; 7;; p. BS CTGCGCC; R16795; 4; 7;; p. BS CGCCGAC; R16796; 3; 7;; p. BS CGCCACC; R16797; 2; 7;; p. BS AGATGAC; R16798; 1; 7;; p. BS TCCCGCC; R16799; 1; 7;; p. BS CGCCGCC; R16800; 3; 7;; p. BS CGCCGCC; R16801; 3; 7;; p. BS CGCCGCC; R16802; 3; 7;; p. BS CGCCGCC; R16803; 4; 7;; p. BS CGCCGCC; R16804; 4; 7;; p. BS CGCCGCC; R16805; 3; 7;; p. BS CGCCGCC; R16806; 3; 7;; p. BS CGCCGCC; R16807; 3; 7;; p. BS CGCCGGC; R16808; 4; 7;; p. BS CGGCGCC; R16809; 2; 7;; p. BS CGCCGCC; R16810; 4; 7;; p. BS CGCCGAC; R16811; 4; 7;; p. BS CGCCGCC; R16812; 4; 7;; p. BS CGCCGCC; R16813; 1; 7;; p. BS CGCCGCC; R16814; 4; 7;; p. BS CGCCGCC; R16815; 2; 7;; p. BS GGCCGCC; R16816; 3; 7;; p. BS TGGCGCC; R16817; 2; 7;; p. BS TGCCGGG; R16818; 4; 7;; p. BS CGCCGCC; R16854; 4; 7;; p. BS CGGCGCC; R16855; 2; 7;; p. BS CGCCGCC; R16856; 2; 7;; p. XX CC 7 rounds of selection with 60mer oligonucleotides containing 10 randomised bases in the center XX RN [1]; RE0035204. RX PUBMED: 12586355. RA Hao D., Ohme-Takagi M., Yamasaki K. RT A modified sensor chip for surface plasmon resonance enables a rapid determination of sequence specificity of DNA-binding proteins. RL FEBS Lett. 536:151-156 (2003). XX // AC M01058 XX ID V$GFI1B_01 XX DT 26.05.2005 (created); elf. DT 29.05.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GFI1B XX BF T06585; Gfi1b; Species: mouse, Mus musculus. XX P0 A C G T 01 2 13 1 27 T 02 55 5 0 1 A 03 64 0 0 0 A 04 64 0 0 0 A 05 0 0 0 64 T 06 0 64 0 0 C 07 61 1 0 2 A 08 4 42 18 0 C 09 10 2 15 37 T 10 6 6 45 7 G 11 5 49 1 5 C 12 27 4 7 19 W XX BA 64 selected sequences XX CC sequences were selected by recombinant Gfi1B from a pool of random oligonucleotides in four rounds of selection and amplification [1]; matrix from reference corrected in position 3 acc. to sequences XX RN [1]; RE0035205. RX PUBMED: 9566867. RA Tong B., Grimes H. L., Yang T. Y., Bear S. E., Qin Z., Du K., El-Deiry W. S., Tsichlis P. N. RT The Gfi-1B proto-oncoprotein represses p21WAF1 and inhibits myeloid cell differentiation. RL Mol. Cell. Biol. 18:2462-2473 (1998). XX // AC M01059 XX ID P$AGL1_01 XX DT 27.05.2005 (created); rhe_cga. DT 27.05.2005 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AGL1 XX BF T03022; SHP1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 25 26 26 22 N 02 19 9 13 58 T 03 8 1 10 80 T 04 29 9 27 34 N 05 0 99 0 0 C 06 1 97 1 0 C 07 45 8 9 37 W 08 47 10 9 33 W 09 67 2 1 29 A 10 37 5 3 54 W 11 21 25 13 40 N 12 23 10 14 22 N 13 18 0 79 2 G 14 7 0 89 3 G 15 42 6 7 44 W 16 71 14 8 6 A 17 60 14 11 14 A 18 21 31 33 14 N XX BA 99 sequences selected by random binding site selection assay XX CC four rounds of selection with in vitro translated protein XX RN [1]; RE0035218. RX PUBMED: 8597661. RA Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. RT DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. RL Plant Cell 8:81-94 (1996). XX // AC M01060 XX ID P$AGL1_02 XX DT 27.05.2005 (created); rhe_cga. DT 27.05.2005 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AGL1 XX BF T03022; SHP1; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 21 11 15 18 N 02 12 6 9 38 T 03 4 1 9 51 T 04 21 5 22 17 N 05 0 65 0 0 C 06 1 63 1 0 C 07 30 6 7 22 W 08 31 4 8 22 W 09 42 1 1 21 W 10 26 3 2 34 W 11 14 14 9 28 N 12 15 8 28 14 N 13 7 0 56 2 G 14 4 0 56 5 G 15 26 6 5 28 W 16 48 10 4 3 A 17 39 9 8 9 A 18 18 15 19 13 N XX BA 65 sequences selected by random binding site selection assay XX CC four rounds of selection with in vitro translated protein XX RN [1]; RE0035218. RX PUBMED: 8597661. RA Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. RT DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. RL Plant Cell 8:81-94 (1996). XX // AC M01061 XX ID P$AGL2_01 XX DT 27.05.2005 (created); rhe_cga. DT 27.05.2005 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AGL2 XX BF T03024; AGL2; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 19 27 29 17 N 02 21 12 23 36 N 03 28 5 6 53 W 04 34 10 14 29 N 05 0 92 0 0 C 06 0 86 0 6 C 07 71 7 4 10 A 08 34 2 6 50 W 09 67 0 0 25 A 10 49 0 0 43 W 11 58 7 7 20 A 12 8 12 7 65 T 13 45 0 47 0 R 14 0 0 92 0 G 15 42 12 9 29 W 16 62 6 2 22 A 17 49 15 14 14 A 18 15 22 31 24 N XX BA 92 sequences selected by random binding site selection assay XX CC four rounds of selection with in vitro translated protein XX RN [1]; RE0035218. RX PUBMED: 8597661. RA Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. RT DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. RL Plant Cell 8:81-94 (1996). XX // AC M01062 XX ID P$AGL2_02 XX DT 27.05.2005 (created); rhe_cga. DT 27.05.2005 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AGL2 XX BF T03024; AGL2; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 14 15 7 15 N 02 14 6 10 21 N 03 11 4 6 30 T 04 19 7 9 16 N 05 0 51 0 0 C 06 0 46 0 5 C 07 39 5 1 6 A 08 20 2 4 25 W 09 37 0 0 14 A 10 25 0 0 26 W 11 28 4 4 15 W 12 4 6 3 38 T 13 26 0 25 0 R 14 0 0 51 0 G 15 23 11 3 14 N 16 40 3 0 8 A 17 33 5 5 8 A 18 6 8 17 20 N XX BA 51 sequences selected by random binding site selection assay XX CC four rounds of selection with in vitro translated protein XX RN [1]; RE0035218. RX PUBMED: 8597661. RA Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. RT DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. RL Plant Cell 8:81-94 (1996). XX // AC M01063 XX ID P$AG_03 XX DT 27.05.2005 (created); rhe_cga. DT 27.05.2005 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AG XX BF T01007; AG; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 21 20 6 19 N 02 9 3 3 51 T 03 10 0 1 55 T 04 29 8 8 21 W 05 0 66 0 0 C 06 0 65 0 1 C 07 31 3 6 26 W 08 47 2 0 17 A 09 52 0 1 13 A 10 25 0 1 40 W 11 17 15 11 23 N 12 19 8 20 19 N 13 7 0 57 2 G 14 2 0 54 10 G 15 22 17 5 22 N 16 45 4 5 12 A 17 40 6 9 11 A 18 15 10 16 25 N XX BA 66 sequences selected by random binding site selection assay XX CC four rounds of selection with in vitro translated protein XX RN [1]; RE0035218. RX PUBMED: 8597661. RA Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. RT DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. RL Plant Cell 8:81-94 (1996). XX // AC M01064 XX ID P$AGL3_03 XX DT 27.05.2005 (created); rhe_cga. DT 27.05.2005 (updated); rhe_cga. CO Copyright (C), Biobase GmbH. XX NA AGL3 XX BF T03025; AGL3; Species: thale cress, Arabidopsis thaliana. XX P0 A C G T 01 18 11 6 7 N 02 8 5 8 21 N 03 5 5 3 29 T 04 14 9 6 13 N 05 2 40 0 0 C 06 0 36 0 6 C 07 34 1 0 7 A 08 18 2 3 19 W 09 28 0 0 14 W 10 19 0 0 23 W 11 28 1 1 12 A 12 3 3 0 36 T 13 29 0 11 2 A 14 0 0 40 2 G 15 12 9 2 19 N 16 25 2 6 9 A 17 23 6 7 6 A 18 9 8 10 15 N XX BA 42 sequences selected by random binding site selection assay XX CC four rounds of selection with in vitro translated protein XX RN [1]; RE0035218. RX PUBMED: 8597661. RA Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. RT DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation. RL Plant Cell 8:81-94 (1996). XX // AC M01065 XX ID P$ABZ1_01 XX DT 29.08.2005 (created); sla. DT 08.09.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA ABZ1 XX BF T08158; ABZ1; Species: tomato, Lycopersicon esculentum. XX P0 A C G T 01 2 0 7 8 K 02 1 1 10 5 K 03 4 5 4 4 N 04 4 2 2 9 T 05 0 4 8 5 K 06 17 0 0 0 A 07 0 17 0 0 C 08 0 0 17 0 G 09 0 0 0 17 T 10 1 0 16 0 G 11 0 0 12 5 G 12 3 5 6 3 N 13 6 5 5 1 N 14 4 3 6 4 N XX BA 17 sequences selected by random binding site selection (RBSS) XX BS GGTTGACGTGGGAA; R17200; 1; 14;; p. BS GGGCCACGTGGTGT; R17201; 1; 14;; p. BS TGCACACGTGTCGC; R17202; 1; 14;; p. BS GGATGACGTGTAGG; R17203; 1; 14;; p. BS TGTTGACGTGGGAC; R17210; 1; 14;; p. BS TTGTGACGTGGCTG; R17211; 1; 14;; p. BS GCCTTACGTGGGCT; R17212; 1; 14;; p. BS GTCTTACGTGGACA; R17213; 1; 14;; p. BS AAATGACGTGGCAA; R17214; 1; 14;; p. BS TGAGGACGTGGTAT; R17215; 1; 14;; p. BS TGTACACGTGGTGT; R17216; 1; 14;; p. BS GTCGTACGTGGCAG; R17217; 1; 14;; p. BS ATGCCACGTGGAAG; R17218; 1; 14;; p. BS TGGTGACGTGTGCA; R17219; 1; 14;; p. BS TGCATACGTGTGCG; R17220; 1; 14;; p. BS TTTATACGTGTCGC; R17221; 1; 14;; p. BS GGATGACGTAGGCG; R17222; 1; 14;; p. XX CC random binding site selection assay: selected with ABZ1 from a pool of oligonucleotides consisting of five random nucleotides on both sides of the ACGT core sequence, five rounds of selection [1] XX RN [1]; RE0035397. RX PUBMED: 15560794. RA Sell S., Hehl R. RT Functional dissection of a small anaerobically induced bZIP transcription factor from tomato. RL Eur. J. Biochem. 271:4534-4544 (2004). XX // AC M01066 XX ID V$BLIMP1_Q6 XX DT 04.09.2005 (created); dtc. DT 05.09.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA BLIMP1 XX BF T00929; Blimp-1; Species: human, Homo sapiens. BF T02316; Blimp-1; Species: mouse, Mus musculus. XX P0 A C G T 01 6 0 2 1 A 02 2 0 7 0 G 03 4 0 5 0 R 04 6 1 2 0 A 05 9 0 0 0 A 06 0 0 9 0 G 07 0 0 5 4 K 08 0 0 9 0 G 09 9 0 0 0 A 10 9 0 0 0 A 11 8 0 0 1 A 12 0 1 6 2 G 13 0 0 5 4 K 14 5 1 3 0 R XX BA 9 compiled sequences XX BS AGGAAGTGAAATTA; R17169; 5; 14;; p. BS AGGCAGGGAAAGTA; R17173; 5; 14;; p. BS GAGGAGGGAAAGGG; R17174; 5; 14;; p. BS AAGGAGGGAAAGGG; R17175; 5; 14;; p. BS AGAAAGGGAAAGGA; R17176; 5; 14;; p. BS TGAAAGTGAAAGTG; R17181; -3; 14;; p. BS GGAAAGTGAATCGC; R17182; 9; 14;; p. BS AGGAAGTGAAATTA; R17189; 13; 14;; p. BS AGAAAGGGAAAGGA; R17190; 6; 14;; p. XX RN [1]; RE0035527. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel93:0001 (2005). XX // AC M01067 XX ID V$GFI1_Q6 XX DT 04.09.2005 (created); dtc. DT 05.09.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA GFI1 XX BF T01921; Gfi1; Species: rat, Rattus norvegicus. BF T06593; Gfi1; Species: mouse, Mus musculus. BF T06587; Gfi1; Species: human, Homo sapiens. BF T06585; Gfi1b; Species: mouse, Mus musculus. BF T06586; Gfi1b; Species: human, Homo sapiens. XX P0 A C G T 01 6 10 4 5 N 02 6 6 7 6 N 03 14 3 3 5 A 04 25 0 0 0 A 05 25 0 0 0 A 06 0 0 3 22 T 07 0 25 0 0 C 08 13 6 1 5 A 09 3 11 6 5 N 10 6 1 9 9 N 11 3 3 13 6 G 12 2 10 9 4 S 13 6 8 3 8 N XX BA 25 compiled sequences XX BS tgaaatcacggta; R16947; 7; 13;; n. BS cccaatcatggct; R16957; 6; 13;; n. BS TGTAATCCCAGCG; R16962; 11; 13;; p. BS GAAAAGCAGGCCT; R16964; 10; 13;; p. BS ccaaagcgctggg; R16965; 17; 13;; n. BS GACAAGCCTGGGC; R16966; 10; 13;; p. BS TGTAATCCCAGCT; R17017; 10; 13;; p. BS TTTAATCACAGCC; R17018; 10; 13;; p. BS gtaaatctgttta; R17029; 10; 13;; n. BS ACAAATCAGGTTC; R17030; 8; 13;; p. BS CAGAATCTCTGGA; R17032; 15; 13;; p. BS agaaatcagttcc; R17033; 9; 13;; n. BS CTAAATCTTTTGA; R17034; 10; 13;; p. BS ccaaatcagtagt; R17041; 9; 13;; n. BS AATAATCACTGGC; R17043; 8; 13;; p. BS ATAAATCCAGTGT; R17044; 8; 13;; p. BS CAAAATCCAGCAT; R17047; 9; 13;; p. BS ccaaatccgatgc; R17048; 10; 13;; n. BS agaaatcaaaggt; R17049; 11; 13;; n. BS ataaatcatcgca; R17051; 10; 13;; n. BS ggaaatctctgcc; R17054; 8; 13;; n. BS CCTAATCTCTCTG; R17057; 9; 13;; p. BS TGGAATCACAGCC; R17076; 16; 13;; p. BS CTGAATCACGAAA; R17077; 9; 13;; p. BS CACAATCATGACT; R17080; 8; 13;; p. XX RN [1]; RE0035527. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel93:0001 (2005). XX // AC M01068 XX ID V$UF1H3BETA_Q6 XX DT 04.09.2005 (created); dtc. DT 05.09.2005 (updated); vma. CO Copyright (C), Biobase GmbH. XX NA UF1H3BETA XX BF T01520; UF1-H3beta; Species: rat, Rattus norvegicus. XX P0 A C G T 01 0 0 7 2 G 02 0 0 7 2 G 03 0 4 0 5 Y 04 0 0 9 0 G 05 0 0 9 0 G 06 0 0 9 0 G 07 0 0 9 0 G 08 0 0 9 0 G 09 6 0 0 3 A 10 2 0 7 0 G 11 0 0 9 0 G 12 0 0 9 0 G 13 0 0 9 0 G 14 2 7 0 0 C XX BA 9 compiled sequences XX BS ggtgggggtagggc; R04323; 1; 14;; n. BS ggcgggggaggggc; R16552; 14; 14;; n. BS TTTGGGGGAGGGGA; R16554; 5; 14;; p. BS ggcgggggaggggc; R16556; 1; 14;; n. BS ggtgggggtggggc; R16557; 1; 14;; n. BS ggtgggggtagggc; R16558; 1; 14;; n. BS ggcgggggaggggc; R16560; 1; 14;; n. BS TTTGGGGGAGGGGA; R16574; 5; 14;; p. BS ggcgggggaggggc; R16576; 1; 14;; n. XX RN [1]; RE0035527. RA TRANSFAC_Team. RT New matrix entries. RL TRANSFAC Reports Rel93:0001 (2005). XX // XX ID V$MA0061.1_NF-kappaB_nr XX P0 A C G T 1 0 0 38 0 2 0 0 38 0 3 1 0 37 0 4 25 0 13 0 5 19 13 1 5 6 7 1 3 27 7 1 2 2 33 8 2 17 0 19 9 2 35 0 1 10 0 36 0 2 XX CC JASPAR 2010, non-redundant. Added 31 Dec 2010 by GR, for PASTAA XX // XX ID V$MA0101.1_REL_nr XX P0 A C G T 1 0 5 8 4 2 0 1 15 1 3 1 0 15 1 4 5 1 9 2 5 6 5 3 3 6 5 1 1 10 7 1 0 0 16 8 2 0 0 15 9 0 15 0 2 10 1 16 0 0 XX CC JASPAR 2010, non-redundant. Added 31 Dec 2010 by GR, for PASTAA XX // XX ID V$MA0105.1_nrNFKB1_nr XX P0 A C G T 1 0 0 18 0 2 0 0 18 0 3 0 0 18 0 4 2 0 16 0 5 11 1 6 0 6 5 0 2 11 7 0 5 2 11 8 0 13 0 5 9 0 17 0 1 10 0 18 0 0 11 1 15 1 1 XX CC Added 31 Dec 2010 by GR, for PASTAA XX // XX ID V$MA0107.1_RELA_nr XX P0 A C G T 1 0 4 11 3 2 0 0 17 1 3 0 0 18 0 4 11 0 7 0 5 10 3 4 1 6 2 0 0 16 7 0 0 0 18 8 0 2 0 16 9 0 18 0 0 10 0 18 0 0 XX CC JASPAR 2010, non-redundant. Added 31 Dec 2010 by GR, for PASTAA XX // XX ID V$RelB-p52_Britanova XX P0 A C G T 1 8 1 162 1 2 2 0 169 1 3 1 0 159 12 4 31 1 139 1 5 68 38 57 9 6 43 1 7 121 7 6 3 2 161 8 12 7 0 153 9 7 132 1 32 10 0 144 3 25 XX CC Iva Kulic reference. Added 31 Dec 2010 by GR, for PASTAA XX // XX ID V$CSL_m1_47sites XX P0 A C G T 1 0.085106 0.531915 0.042553 0.340426 2 0.191489 0.000000 0.702128 0.106383 3 0.000000 0.000000 0.000000 1.000000 4 0.000000 0.000000 1.000000 0.000000 5 0.000000 0.000000 0.893617 0.106383 6 0.042553 0.000000 0.957447 0.000000 7 1.000000 0.000000 0.000000 0.000000 8 0.914894 0.000000 0.042553 0.042553 XX // XX ID V$CSL_m1_47sites_1000x XX P0 A C G T 1 85 532 43 340 2 191 0 702 106 3 0 0 0 1000 4 0 0 1000 0 5 0 0 894 106 6 43 0 957 0 7 1000 0 0 0 8 915 0 43 43 XX CC Added 31 Dec 2010 by GR, for PASTAA XX // XX ID V$CSL_m2_11sites XX P0 A C G T 1 0.000000 0.090909 0.454545 0.454545 2 0.000000 0.000000 1.000000 0.000000 3 0.000000 0.000000 1.000000 0.000000 4 0.454545 0.000000 0.545455 0.000000 5 0.727273 0.000000 0.090909 0.181818 6 0.454545 0.090909 0.363636 0.090909 7 0.000000 0.000000 0.454545 0.545455 8 0.000000 0.181818 0.000000 0.818182 9 0.000000 0.727273 0.272727 0.000000 10 0.000000 1.000000 0.000000 0.000000 11 0.000000 1.000000 0.000000 0.000000 12 0.181818 0.454545 0.090909 0.272727 13 0.272727 0.181818 0.000000 0.545455 14 0.000000 0.909091 0.000000 0.090909 15 0.090909 0.272727 0.000000 0.636364 XX CC Added 31 Dec 2010 by GR, for PASTAA XX // XX ID V$CSL_m2_11sites_1000x XX P0 A C G T 1 0 91 455 455 2 0 0 1000 0 3 0 0 1000 0 4 455 0 545 0 5 727 0 91 182 6 455 91 364 91 7 0 0 455 545 8 0 182 0 818 9 0 727 273 0 10 0 1000 0 0 11 0 1000 0 0 12 182 455 91 273 13 273 182 0 545 14 0 909 0 91 15 91 273 0 636 XX CC Added 31 Dec 2010 by GR, for PASTAA XX //