Info: Log File: /projects/mapp_etc/other/HS1238/bigWig/H4ac_HS1238_hg18_xset200_mapq_2010100328.log Info: * Output directory : /projects/mapp_etc/other/HS1238/bigWig/ Info: * Naming files as : H4ac_HS1238_hg18_xset200_mapq_2010100328 Info: * MC simulation : Off Info: * Chr name prepend : chr Info: * Min. reported pk ht : 0 Info: * Min. cov. allowed : 0.0010 Info: * Minimum ht to process: Off Info: * Lander-Waterman FDR : Off Info: * Output Sequence : Off Info: * Control files in use : Off Info: * Compare files in use : Off Info: * Auto-threshold : Off Info: * Filter on PET flags : Off Info: * Maximum PET frag size: Off Info: * Aligner : maq Info: * Triangle dist. : 100 low Info: * Triangle dist. : 200 median Info: * Triangle dist. : 300 high Info: * Maq file format : 128bit reads (default value. use -maq_read_size to override) Info: * One file per chr. : Off Info: * Sub-peaks : Off Info: * Trim : Off Info: * Saturation Analysis : Off Info: * Wig step size : 1 Info: * Histogram length : 30 Info: * Histogram precision : 1 Info: * Peaks File Header : On Info: * Bedgraph/Wigfile : wig file Info: * R mode : Off Info: * Filter Duplicates : Off Info: * Filter quality min. : On (10) Info: * Input Files : Info: /archive/solexa1_4/analysis2/HS1238/42F5NAAXX_2/maq/42F5NAAXX_2.map Version: Initializing class PeakWriter $Revision: 1498 $ Version: Initializing class Generic_AlignRead_Iterator $Revision: 1600 $ Version: Initializing class MAQmapIterator $Revision: 1790 $ Info: number of mapped reads in header: 16316102 Info: Running Peak Processor Version: Initializing class PeakDataSet Peak Locator $Revision: 1982 $ Version: Initializing class PeakStore $Revision: 1335 $ Version: Initializing class MapStore $Revision: 1335 $ Info: Current chromosome : 1 Info: Reads used: 1296178 Info: Reads filtered by iterator: 352936 Version: Initializing class PeakStats $Revision: 1335 $ Version: Initializing class Histogram $Revision: 1197 $ Version: Initializing class WigwriterBuffered $Revision: 1977 $ Info: writing to : /projects/mapp_etc/other/HS1238/bigWig/H4ac_HS1238_hg18_xset200_mapq_2010100328_triangle_standard_1.wig.gz Info: Running Peak Processor Info: Current chromosome : 10 Info: Reads used: 730023 Info: Reads filtered by iterator: 567160