Info:    Log File: /projects/mapp_etc/other/HS1238/bigWig/H4ac_HS1238_hg18_xset200_mapq10_min2_dupN_2010100328.log
Info:     * Output directory     : /projects/mapp_etc/other/HS1238/bigWig/
Info:     * Naming files as      : H4ac_HS1238_hg18_xset200_mapq10_min2_dupN_2010100328
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 2
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : maq
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * Maq file format      : 128bit reads (default value.  use -maq_read_size to override)
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          /archive/solexa1_4/analysis2/HS1238/42F5NAAXX_2/maq/42F5NAAXX_2.map
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class MAQmapIterator                    $Revision: 1790 $
Info:    number of mapped reads in header: 16316102
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 1982 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 1237403
Info:    Reads filtered by duplicate: 58775
Info:    Reads filtered by iterator: 352936
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 1977 $
Info:    writing to : /projects/mapp_etc/other/HS1238/bigWig/H4ac_HS1238_hg18_xset200_mapq10_min2_dupN_2010100328_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 711916
Info:    Reads filtered by duplicate: 18107
Info:    Reads filtered by iterator: 567160
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 781949
Info:    Reads filtered by duplicate: 13875
Info:    Reads filtered by iterator: 722142
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 584637
Info:    Reads filtered by duplicate: 7824
Info:    Reads filtered by iterator: 849274
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 428214
Info:    Reads filtered by duplicate: 5186
Info:    Reads filtered by iterator: 921402
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 462047
Info:    Reads filtered by duplicate: 6988
Info:    Reads filtered by iterator: 1010476
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 389195
Info:    Reads filtered by duplicate: 5101
Info:    Reads filtered by iterator: 1117804
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 279477
Info:    Reads filtered by duplicate: 3908
Info:    Reads filtered by iterator: 1240680
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 517610
Info:    Reads filtered by duplicate: 8602
Info:    Reads filtered by iterator: 1392764
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 302329
Info:    Reads filtered by duplicate: 9616
Info:    Reads filtered by iterator: 1464520
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 336917
Info:    Reads filtered by duplicate: 13332
Info:    Reads filtered by iterator: 1614244
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 1197335
Info:    Reads filtered by duplicate: 19147
Info:    Reads filtered by iterator: 1929712
Info:    Running Peak Processor
Info:    Current chromosome : 20
Info:    Reads used: 441402
Info:    Reads filtered by duplicate: 7656
Info:    Reads filtered by iterator: 1994584
Info:    Running Peak Processor
Info:    Current chromosome : 21
Info:    Reads used: 154678
Info:    Reads filtered by duplicate: 2230
Info:    Reads filtered by iterator: 2027778
Info:    Running Peak Processor
Info:    Current chromosome : 22
Info:    Reads used: 148797
Info:    Reads filtered by duplicate: 1873
Info:    Reads filtered by iterator: 2082774
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 926008
Info:    Reads filtered by duplicate: 11750
Info:    Reads filtered by iterator: 2251414
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 833208
Info:    Reads filtered by duplicate: 10407
Info:    Reads filtered by iterator: 2433402
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 929886
Info:    Reads filtered by duplicate: 12812
Info:    Reads filtered by iterator: 2626308
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 1107029
Info:    Reads filtered by duplicate: 28834
Info:    Reads filtered by iterator: 2803694
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 821022
Info:    Reads filtered by duplicate: 21174
Info:    Reads filtered by iterator: 3059310
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 645486
Info:    Reads filtered by duplicate: 8827
Info:    Reads filtered by iterator: 3207856
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 526656
Info:    Reads filtered by duplicate: 7680
Info:    Reads filtered by iterator: 3418906
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 409
Info:    Reads filtered by duplicate: 58
Info:    Reads filtered by iterator: 3418978
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 437868
Info:    Reads filtered by duplicate: 6562
Info:    Reads filtered by iterator: 3610286
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 4149
Info:    Reads filtered by duplicate: 573
Info:    Reads filtered by iterator: 3638950
Info:    Wrote to:/projects/mapp_etc/other/HS1238/bigWig/H4ac_HS1238_hg18_xset200_mapq10_min2_dupN_2010100328_triangle_standard.wig.gz