Subject: H1 
Date: Tuesday, 13April, 2010 2:00 PM
From: Cydney Nielsen <cydneyn@bcgsc.ca>
To: Gordon Robertson <grobertson@bcgsc.ca>
Conversation: H1 

Hi Gordon,

Here are the libraries that I've been using for H1 analyses. All wigs 
can be found in:

/projects/tab/data/Peaks/SLX-ChIP/yourLibName/FP4.0.11/

A full set of histone mods are available for batch 1:

H3K27me3        HS0997
H3K36me3        HS1032
H3K4me1 HS1413
H3K4me3 HS0996
H3K9Ac          HS0995
H3K9me3 HS0998
MRE             HS1052
MeDIP           HS1376

The WTSS (HS1272) and miRNA (HS01295) libraries are only available for 
batch 2. Erin Pleasance just generated a wig file for me for the WTSS 
library, which can be found here:

/projects/epleasance/REMC/data/wtss/libraries/HS1272/maq_results/
repositioned_merged.wig

I was planning to convert that to a bigwig shortly.

Wigs for the miRNA library were generated by Andy Chu and I believe 
are found here: /projects/mirna/REMC/archive/wig/HS1295/ but let me 
double check that these are the same as a local combined file I've 
been using. Perhaps I will also convert this to bigwig and put it in a 
common place.

Enjoy!

Cydney