Version: Vancouver Short Read Analysis Package                4.0.16-dev.interval
Version: Initializing class SortFiles                         $Revision: 3124 $
Info:    Processing file: out/chr10.part.interval.gz
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 3118 $
Version: Initializing class BedIterator                       $Revision: 2933 $
Version: Initializing class Log_Buffer                        $Revision: 2530 $
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    Processing file: out/chr11.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    Processing file: out/chr12.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    Processing file: out/chr13.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    Processing file: out/chr14.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    Processing file: out/chr15.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    Processing file: out/chr16.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    Processing file: out/chr17.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    Processing file: out/chr18.part.interval.gz
Info:    100000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    Processing file: out/chr19.part.interval.gz
Info:    100000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    Processing file: out/chr1.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    400000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    400000 lines written.
Info:    Processing file: out/chr2.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    400000 lines read.
Info:    500000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    400000 lines written.
Info:    500000 lines written.
Info:    Processing file: out/chr3.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    Processing file: out/chr4.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    Processing file: out/chr5.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    Processing file: out/chr6.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    Processing file: out/chr7.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    Processing file: out/chr8.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    Processing file: out/chr9.part.interval.gz
Info:    100000 lines read.
Info:    200000 lines read.
Info:    300000 lines read.
Info:    400000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    200000 lines written.
Info:    300000 lines written.
Info:    400000 lines written.
Info:    Processing file: out/chrM.part.interval.gz
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    Processing file: out/chrX.part.interval.gz
Info:    100000 lines read.
Info:    Sorting reads...
Info:    Creating and writing to new file in place...
Info:    100000 lines written.
Info:    Processing file: out/chrY.part.interval.gz
Info:    Sorting reads...
Info:    Creating and writing to new file in place...