Info:    Log File: wig/3T3L1_t1_GSM535743_H3K4me1_ChIP-seq.mm9_ht5_q10.log
Info:     * Output directory     : wig/
Info:     * Naming files as      : 3T3L1_t1_GSM535743_H3K4me1_ChIP-seq.mm9_ht5_q10
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : none
Info:     * Min. reported pk ht  : 5
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : bed
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Wig File Headers     : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          out/chr10.part.bed.gz
Info:          out/chr11.part.bed.gz
Info:          out/chr12.part.bed.gz
Info:          out/chr13.part.bed.gz
Info:          out/chr14.part.bed.gz
Info:          out/chr15.part.bed.gz
Info:          out/chr16.part.bed.gz
Info:          out/chr17.part.bed.gz
Info:          out/chr18.part.bed.gz
Info:          out/chr19.part.bed.gz
Info:          out/chr1.part.bed.gz
Info:          out/chr2.part.bed.gz
Info:          out/chr3.part.bed.gz
Info:          out/chr4.part.bed.gz
Info:          out/chr5.part.bed.gz
Info:          out/chr6.part.bed.gz
Info:          out/chr7.part.bed.gz
Info:          out/chr8.part.bed.gz
Info:          out/chr9.part.bed.gz
Info:          out/chrX.part.bed.gz
Version: Initializing class PeakWriter                        $Revision: 2532 $
Info:    Running Peak Processor
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 2723 $
Version: Initializing class BedIterator                       $Revision: 2530 $
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2768 $
Version: Initializing class PeakStore                         $Revision: 2739 $
Version: Initializing class MapStore                          $Revision: 2738 $
Info:    Current chromosome : chr10
Info:    Reads used: 360121
Info:    Reads filtered by duplicate: 10077
Version: Initializing class PeakStats                         $Revision: 2532 $
Version: Initializing class Histogram                         $Revision: 2530 $
Version: Initializing class WigwriterBuffered                 $Revision: 2530 $
Info:    writing to : wig/3T3L1_t1_GSM535743_H3K4me1_ChIP-seq.mm9_ht5_q10_triangle_standard_chr10.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : chr11
Info:    Reads used: 387102
Info:    Reads filtered by duplicate: 7135
Info:    Running Peak Processor
Info:    Current chromosome : chr12
Info:    Reads used: 264744
Info:    Reads filtered by duplicate: 10760
Info:    Running Peak Processor
Info:    Current chromosome : chr13
Info:    Reads used: 302775
Info:    Reads filtered by duplicate: 7991
Info:    Running Peak Processor
Info:    Current chromosome : chr14
Info:    Reads used: 238150
Info:    Reads filtered by duplicate: 3327
Info:    Running Peak Processor
Info:    Current chromosome : chr15
Info:    Reads used: 300297
Info:    Reads filtered by duplicate: 4927
Info:    Running Peak Processor
Info:    Current chromosome : chr16
Info:    Reads used: 292698
Info:    Reads filtered by duplicate: 5253
Info:    Running Peak Processor
Info:    Current chromosome : chr17
Info:    Reads used: 299776
Info:    Reads filtered by duplicate: 5004
Info:    Running Peak Processor
Info:    Current chromosome : chr18
Info:    Reads used: 222404
Info:    Reads filtered by duplicate: 3693
Info:    Running Peak Processor
Info:    Current chromosome : chr19
Info:    Reads used: 215325
Info:    Reads filtered by duplicate: 3677
Info:    Running Peak Processor
Info:    Current chromosome : chr1
Info:    Reads used: 481834
Info:    Reads filtered by duplicate: 7408
Info:    Running Peak Processor
Info:    Current chromosome : chr2
Info:    Reads used: 592895
Info:    Reads filtered by duplicate: 170763
Info:    Running Peak Processor
Info:    Current chromosome : chr3
Info:    Reads used: 456401
Info:    Reads filtered by duplicate: 8035
Info:    Running Peak Processor
Info:    Current chromosome : chr4
Info:    Reads used: 367259
Info:    Reads filtered by duplicate: 7068
Info:    Running Peak Processor
Info:    Current chromosome : chr5
Info:    Reads used: 452700
Info:    Reads filtered by duplicate: 7602
Info:    Running Peak Processor
Info:    Current chromosome : chr6
Info:    Reads used: 533513
Info:    Reads filtered by duplicate: 14174
Info:    Running Peak Processor
Info:    Current chromosome : chr7
Info:    Reads used: 334446
Info:    Reads filtered by duplicate: 4623
Info:    Running Peak Processor
Info:    Current chromosome : chr8
Info:    Reads used: 411399
Info:    Reads filtered by duplicate: 6886
Info:    Running Peak Processor
Info:    Current chromosome : chr9
Info:    Reads used: 345379
Info:    Reads filtered by duplicate: 229725
Info:    Running Peak Processor
Info:    Current chromosome : chrX
Info:    Reads used: 209222
Info:    Reads filtered by duplicate: 4707
Info:    Wrote to:wig/3T3L1_t1_GSM535743_H3K4me1_ChIP-seq.mm9_ht5_q10_triangle_standard.wig.gz