FastQCFastQC Report
Thu 12 Dec 2019
lane8_AACTTG_S28_L008_I1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamelane8_AACTTG_S28_L008_I1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences252678266
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTG24417763596.63578861191013No Hit
ACCTTG18448390.7301138436655252No Hit
TACTTG17438960.6901646222314981No Hit
AACTTT14504510.5740307716058175No Hit
NACTTG7603110.3009008301489611No Hit
AACTTA6191290.24502661420036814No Hit
AAGTTG5172240.20469667145808257No Hit
AACTGG4125260.16326137048922126No Hit
AACTCG3401450.134615851764631No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.8)