Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.
Mean base quality of reads with low and high mapping quality.
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mer | Q | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | MAPQ >= 30 | 9.0 | 8.2 | 7.8 | 8.0 | 8.1 | 7.6 | 7.5 | 7.4 | 7.8 | 8.5 | 8.0 | 7.9 | 8.0 | 7.9 | 7.7 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.4 | 7.4 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 |
| AA | MAPQ >= 20 | 8.1 | 7.5 | 7.3 | 7.3 | 7.7 | 7.1 | 6.7 | 6.8 | 7.0 | 7.7 | 7.2 | 6.9 | 7.3 | 7.2 | 7.1 | 6.9 | 7.0 | 6.9 | 7.0 | 7.1 | 6.9 | 7.2 | 7.2 | 7.0 | 7.3 | 7.2 | 7.1 | 7.4 | 7.1 | 7.0 | 7.4 | 7.0 | 6.8 | 6.9 | 6.8 | 6.8 | 7.0 | 7.0 | 7.0 | 7.1 | 6.8 | 6.7 | 6.9 | 6.8 | 6.7 | 7.0 | 6.9 | 6.7 | 6.7 | 6.6 | 6.8 | 6.9 | 6.8 | 6.9 | 7.0 | 6.8 | 6.8 | 6.7 | 6.7 | 6.6 | 6.9 | 6.7 | 6.7 | 6.9 | 6.8 | 6.7 | 7.0 | 6.7 | 6.6 | 6.9 | 6.9 | 6.9 | 6.7 | 6.9 | 6.6 | 7.0 | 6.9 | 6.8 | 7.0 | 6.7 | 6.7 | 6.9 | 6.8 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 6.7 | 6.8 | 6.8 | 6.6 | 6.8 | 6.7 | 6.7 |
| AA | MAPQ < 3 | 7.3 | 6.9 | 6.7 | 6.8 | 6.9 | 6.3 | 6.5 | 6.3 | 6.6 | 7.3 | 6.8 | 6.8 | 6.9 | 6.9 | 6.7 | 6.6 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.4 | 6.6 | 6.6 | 6.4 | 6.4 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.5 | 6.6 | 6.3 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.1 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.4 | 6.5 | 6.4 | 6.7 | 6.7 | 6.5 | 6.7 | 6.6 | 6.5 | 6.7 | 6.4 | 6.3 | 6.6 | 6.5 | 6.4 | 6.6 | 6.5 | 6.4 | 6.5 | 6.5 | 6.3 | 6.5 | 6.4 | 6.2 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.5 | 6.2 |
| AC | MAPQ >= 30 | 4.7 | 5.0 | 4.9 | 4.8 | 5.2 | 5.0 | 5.1 | 4.9 | 4.6 | 5.2 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.4 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 |
| AC | MAPQ >= 20 | 4.6 | 5.2 | 4.9 | 4.8 | 5.2 | 5.0 | 5.2 | 4.9 | 4.5 | 5.2 | 5.0 | 4.9 | 4.8 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.3 | 5.2 | 5.0 | 5.2 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.2 | 5.0 | 5.3 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.4 | 5.0 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.0 | 5.0 | 5.2 | 5.0 | 5.0 | 5.2 | 5.1 | 5.2 | 5.3 | 5.0 | 5.1 | 5.4 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.2 | 4.9 | 5.0 | 5.2 | 5.3 | 5.1 | 5.6 | 5.3 | 5.1 | 5.3 | 5.0 | 5.3 | 5.4 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.0 | 5.2 | 5.2 | 5.0 | 5.1 | 5.3 | 5.0 | 5.1 | 5.2 | 5.2 | 5.0 | 5.2 | 5.0 | 5.0 | 5.2 | 5.2 | 5.1 | 5.1 | 4.8 |
| AC | MAPQ < 3 | 4.4 | 5.0 | 4.9 | 4.6 | 5.2 | 4.9 | 5.0 | 4.8 | 4.6 | 5.0 | 5.1 | 4.8 | 4.9 | 5.0 | 4.9 | 5.0 | 5.2 | 5.0 | 5.0 | 5.1 | 4.9 | 5.0 | 5.2 | 4.9 | 4.9 | 5.0 | 4.8 | 5.0 | 5.1 | 4.9 | 5.1 | 5.2 | 5.3 | 5.2 | 5.3 | 5.1 | 4.9 | 5.3 | 4.8 | 5.1 | 5.2 | 4.9 | 4.9 | 5.1 | 4.8 | 4.9 | 5.0 | 4.9 | 4.9 | 5.1 | 4.9 | 4.8 | 5.0 | 4.9 | 5.0 | 5.2 | 5.1 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.8 | 4.8 | 5.0 | 4.8 | 4.8 | 5.2 | 5.0 | 4.9 | 5.0 | 4.8 | 5.0 | 5.1 | 4.8 | 4.8 | 5.0 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 5.1 | 4.9 | 5.1 | 5.4 | 5.1 | 5.1 | 5.3 | 4.9 | 4.9 | 5.1 | 5.3 |
| AG | MAPQ >= 30 | 9.4 | 7.3 | 7.1 | 8.0 | 7.5 | 7.4 | 6.8 | 6.8 | 6.9 | 7.7 | 7.4 | 7.2 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 |
| AG | MAPQ >= 20 | 8.9 | 7.1 | 7.0 | 7.9 | 7.3 | 7.5 | 6.6 | 6.5 | 6.8 | 7.7 | 7.3 | 7.3 | 7.5 | 7.3 | 7.5 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.2 | 7.5 | 7.3 | 7.2 | 7.4 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.0 | 7.0 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 | 6.9 | 7.2 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.3 | 7.1 | 7.3 | 7.0 | 7.1 | 7.3 | 7.4 | 7.0 | 7.2 | 7.1 | 7.0 | 7.1 | 7.3 | 6.8 | 7.1 | 7.2 | 6.9 | 7.1 | 7.0 | 7.2 | 6.9 | 7.1 | 6.9 | 6.8 | 7.1 | 6.8 | 6.9 | 6.8 | 7.1 | 7.0 | 6.8 | 6.8 | 6.8 | 6.9 | 6.8 | 6.9 | 6.8 | 7.0 | 7.3 | 6.8 | 7.0 | 6.9 | 7.0 | 6.9 |
| AG | MAPQ < 3 | 8.5 | 6.7 | 6.5 | 7.3 | 6.9 | 6.9 | 6.3 | 6.6 | 6.5 | 7.4 | 7.0 | 6.8 | 6.8 | 7.0 | 7.0 | 6.9 | 7.1 | 7.1 | 6.8 | 7.0 | 7.0 | 6.8 | 6.9 | 6.7 | 6.8 | 6.9 | 6.9 | 7.2 | 7.0 | 7.0 | 7.2 | 7.0 | 7.1 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.7 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.8 | 6.8 | 6.8 | 7.0 | 6.8 | 6.9 | 6.8 | 6.7 | 6.6 | 6.7 | 6.8 | 6.6 | 6.9 | 6.9 | 6.7 | 6.9 | 6.8 | 6.6 | 6.9 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.2 | 6.3 | 6.5 | 6.3 | 6.3 | 6.3 | 6.3 | 6.1 | 6.2 | 6.3 | 6.1 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.1 | 6.0 | 6.2 |
| AT | MAPQ >= 30 | 7.9 | 5.6 | 6.0 | 5.8 | 6.1 | 6.5 | 6.3 | 6.3 | 5.6 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.0 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 5.9 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 | 5.8 |
| AT | MAPQ >= 20 | 7.8 | 5.4 | 5.7 | 5.8 | 6.2 | 6.5 | 6.5 | 6.5 | 5.5 | 6.3 | 6.2 | 5.9 | 6.3 | 6.0 | 6.1 | 6.0 | 5.9 | 6.0 | 5.9 | 5.9 | 5.8 | 6.1 | 6.1 | 5.7 | 5.9 | 5.9 | 6.1 | 5.9 | 5.8 | 5.8 | 6.1 | 6.0 | 5.7 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.8 | 6.2 | 6.0 | 5.9 | 5.9 | 6.0 | 5.8 | 5.8 | 5.9 | 5.8 | 5.9 | 5.7 | 5.6 | 5.9 | 5.8 | 5.5 | 5.8 | 5.9 | 5.6 | 5.9 | 5.8 | 5.5 | 5.8 | 6.0 | 5.8 | 5.9 | 5.9 | 5.8 | 5.7 | 5.6 | 5.6 | 5.7 | 5.8 | 5.5 | 5.7 | 5.7 | 5.5 | 5.6 | 5.6 | 5.6 | 5.7 | 5.9 | 5.7 | 5.8 | 5.8 | 5.8 | 5.7 | 5.8 | 5.5 | 5.8 | 5.9 | 5.6 | 5.7 | 5.5 | 5.5 | 5.6 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 |
| AT | MAPQ < 3 | 6.9 | 5.2 | 5.3 | 5.2 | 5.6 | 5.6 | 5.6 | 5.7 | 4.9 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.5 | 5.3 | 5.4 | 5.3 | 5.1 | 5.4 | 5.3 | 5.4 | 5.6 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.3 | 5.2 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.5 | 5.3 | 5.4 | 5.2 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.2 | 5.4 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.4 | 5.0 | 5.2 | 5.4 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.0 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.3 | 4.9 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 4.8 | 5.1 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 |
| CA | MAPQ >= 30 | 8.4 | 5.4 | 7.5 | 7.4 | 6.8 | 7.2 | 7.0 | 7.3 | 7.9 | 7.3 | 7.3 | 7.7 | 7.4 | 7.4 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.4 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.5 | 7.7 | 7.6 | 7.4 | 7.8 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.4 | 7.6 | 7.5 | 7.4 | 7.6 | 7.5 | 7.3 | 7.5 | 7.4 | 7.3 | 7.4 |
| CA | MAPQ >= 20 | 8.6 | 5.3 | 7.7 | 7.5 | 6.7 | 7.4 | 7.1 | 7.2 | 8.2 | 7.2 | 7.5 | 7.9 | 7.3 | 7.3 | 7.5 | 7.6 | 7.5 | 7.6 | 7.7 | 7.3 | 7.8 | 7.8 | 7.3 | 7.6 | 7.6 | 7.4 | 7.5 | 7.3 | 7.3 | 7.7 | 7.5 | 7.3 | 7.6 | 7.7 | 7.5 | 7.5 | 7.8 | 7.4 | 7.6 | 7.4 | 7.2 | 7.3 | 7.4 | 7.1 | 7.6 | 7.5 | 7.1 | 7.3 | 7.4 | 7.3 | 7.7 | 7.5 | 7.1 | 7.5 | 7.5 | 7.1 | 7.5 | 7.4 | 7.0 | 7.4 | 7.5 | 7.2 | 7.4 | 7.3 | 7.3 | 7.5 | 7.6 | 7.2 | 7.7 | 7.5 | 7.1 | 7.6 | 7.4 | 7.4 | 7.6 | 7.6 | 7.3 | 7.4 | 7.4 | 7.2 | 7.7 | 7.6 | 7.3 | 7.5 | 7.4 | 7.1 | 7.6 | 7.5 | 7.3 | 7.4 | 7.3 | 7.1 | 7.4 | 7.3 | 7.0 | 7.4 | 7.1 | 7.0 | 7.4 |
| CA | MAPQ < 3 | 8.0 | 5.1 | 7.3 | 7.1 | 6.4 | 6.9 | 6.9 | 6.9 | 7.6 | 7.0 | 7.0 | 7.4 | 7.3 | 7.0 | 7.3 | 7.3 | 7.3 | 7.2 | 7.1 | 7.1 | 7.3 | 7.2 | 6.9 | 7.2 | 7.2 | 6.9 | 7.2 | 7.3 | 7.0 | 7.4 | 7.4 | 7.2 | 7.4 | 7.5 | 7.1 | 7.3 | 7.3 | 7.0 | 7.2 | 7.1 | 6.9 | 7.1 | 7.0 | 6.9 | 7.1 | 7.1 | 7.0 | 7.2 | 7.2 | 7.0 | 7.3 | 7.3 | 7.1 | 7.3 | 7.2 | 7.1 | 7.2 | 7.1 | 6.9 | 7.1 | 7.0 | 6.8 | 7.0 | 7.0 | 6.8 | 6.9 | 7.0 | 6.8 | 7.1 | 7.0 | 6.8 | 7.0 | 6.9 | 6.8 | 7.0 | 7.0 | 6.7 | 6.9 | 6.9 | 6.6 | 6.9 | 6.9 | 6.8 | 6.9 | 7.0 | 6.7 | 6.8 | 6.9 | 6.6 | 6.9 | 7.0 | 6.8 | 7.1 | 7.0 | 6.7 | 6.9 | 6.8 | 6.8 | 6.6 |
| CC | MAPQ >= 30 | 6.1 | 5.6 | 6.8 | 5.9 | 6.0 | 6.1 | 6.2 | 6.4 | 6.0 | 6.0 | 6.3 | 6.3 | 6.3 | 6.6 | 6.5 | 6.5 | 6.7 | 6.7 | 6.6 | 6.6 | 6.7 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.8 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.8 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 6.9 | 7.0 | 6.9 | 7.0 | 7.1 | 7.0 | 7.0 | 7.1 |
| CC | MAPQ >= 20 | 6.2 | 6.2 | 7.2 | 6.0 | 6.3 | 6.4 | 6.3 | 6.7 | 6.1 | 6.1 | 6.5 | 6.4 | 6.6 | 6.7 | 6.9 | 6.9 | 6.9 | 7.1 | 6.9 | 6.9 | 7.0 | 6.7 | 6.8 | 6.9 | 6.9 | 6.7 | 6.7 | 6.5 | 6.7 | 6.8 | 6.8 | 7.1 | 7.2 | 7.1 | 7.1 | 7.4 | 7.3 | 7.2 | 7.0 | 6.7 | 6.8 | 7.2 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.3 | 7.2 | 6.9 | 7.1 | 7.3 | 7.2 | 7.3 | 7.1 | 7.0 | 7.3 | 7.1 | 7.1 | 7.4 | 7.2 | 7.1 | 7.0 | 6.9 | 6.9 | 7.2 | 7.0 | 7.2 | 7.3 | 7.0 | 6.9 | 7.1 | 6.9 | 6.9 | 7.3 | 7.1 | 7.2 | 7.5 | 7.4 | 7.4 | 7.4 | 7.3 | 7.0 | 7.3 | 7.2 | 7.2 | 7.3 | 7.4 | 7.2 | 7.4 | 7.4 | 7.6 | 7.8 | 7.5 | 7.6 | 7.8 | 7.7 | 7.8 | 7.9 |
| CC | MAPQ < 3 | 7.0 | 6.8 | 7.7 | 6.6 | 6.7 | 7.1 | 7.0 | 7.2 | 6.7 | 6.7 | 7.2 | 7.1 | 7.0 | 7.2 | 7.2 | 7.0 | 7.3 | 7.3 | 7.2 | 7.4 | 7.5 | 7.2 | 7.4 | 7.6 | 7.3 | 7.4 | 7.6 | 7.2 | 7.3 | 7.3 | 7.1 | 7.2 | 7.3 | 7.3 | 7.4 | 7.5 | 7.2 | 7.3 | 7.5 | 7.3 | 7.5 | 7.5 | 7.3 | 7.5 | 7.5 | 7.3 | 7.6 | 7.5 | 7.3 | 7.6 | 7.5 | 7.2 | 7.4 | 7.6 | 7.3 | 7.4 | 7.6 | 7.4 | 7.4 | 7.6 | 7.3 | 7.5 | 7.5 | 7.4 | 7.5 | 7.7 | 7.5 | 7.6 | 7.6 | 7.7 | 7.8 | 7.8 | 7.9 | 8.1 | 8.2 | 8.0 | 7.9 | 8.2 | 7.9 | 8.1 | 8.2 | 8.1 | 8.3 | 8.4 | 8.3 | 8.3 | 8.4 | 8.4 | 8.4 | 8.3 | 8.3 | 8.6 | 8.7 | 8.6 | 8.8 | 9.0 | 8.7 | 8.7 | 8.8 |
| CG | MAPQ >= 30 | 3.1 | 1.3 | 2.5 | 2.4 | 2.1 | 2.4 | 2.0 | 2.4 | 2.4 | 2.3 | 2.4 | 2.4 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.2 | 2.3 | 2.3 | 2.2 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.4 | 2.5 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.4 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.4 | 2.3 | 2.3 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.5 | 2.5 | 2.5 | 2.5 |
| CG | MAPQ >= 20 | 4.1 | 1.6 | 3.4 | 3.0 | 2.6 | 3.0 | 2.6 | 3.3 | 3.1 | 3.0 | 3.1 | 3.2 | 2.9 | 2.8 | 3.0 | 2.8 | 2.8 | 3.0 | 2.9 | 2.8 | 3.0 | 2.9 | 2.7 | 3.0 | 2.9 | 3.0 | 3.0 | 3.0 | 3.0 | 3.0 | 3.0 | 3.2 | 3.2 | 3.2 | 2.9 | 3.0 | 2.9 | 3.0 | 3.1 | 3.0 | 3.2 | 3.1 | 3.3 | 3.2 | 3.0 | 3.2 | 3.0 | 3.3 | 3.2 | 3.3 | 3.1 | 3.1 | 3.1 | 3.1 | 3.1 | 3.0 | 3.3 | 3.2 | 3.2 | 3.2 | 3.2 | 3.1 | 3.2 | 3.3 | 3.0 | 3.1 | 3.3 | 3.1 | 3.5 | 3.4 | 3.3 | 3.4 | 3.4 | 3.2 | 3.2 | 3.3 | 3.3 | 3.2 | 3.2 | 3.2 | 3.3 | 3.2 | 3.1 | 3.2 | 3.2 | 3.1 | 3.3 | 3.2 | 3.2 | 3.2 | 3.1 | 3.4 | 3.3 | 3.3 | 3.2 | 3.4 | 3.4 | 3.3 | 3.3 |
| CG | MAPQ < 3 | 5.3 | 2.5 | 4.7 | 4.4 | 3.7 | 4.2 | 3.6 | 4.2 | 4.2 | 4.2 | 4.1 | 4.5 | 4.1 | 3.9 | 4.3 | 4.1 | 3.9 | 4.3 | 4.1 | 4.0 | 4.2 | 4.0 | 4.2 | 4.2 | 4.2 | 4.3 | 4.3 | 4.2 | 4.2 | 4.3 | 4.1 | 4.1 | 4.3 | 4.3 | 4.3 | 4.4 | 4.2 | 4.2 | 4.4 | 4.3 | 4.5 | 4.6 | 4.5 | 4.2 | 4.4 | 4.6 | 4.3 | 4.6 | 4.4 | 4.1 | 4.4 | 4.2 | 4.2 | 4.4 | 4.3 | 4.1 | 4.5 | 4.5 | 4.1 | 4.3 | 4.2 | 4.1 | 4.4 | 4.2 | 4.2 | 4.4 | 4.3 | 4.3 | 4.7 | 4.3 | 4.3 | 4.4 | 4.4 | 4.4 | 4.6 | 4.4 | 4.4 | 4.6 | 4.5 | 4.4 | 4.6 | 4.5 | 4.5 | 4.7 | 4.6 | 4.5 | 4.7 | 4.6 | 4.6 | 4.8 | 4.6 | 4.5 | 4.8 | 4.7 | 4.7 | 5.0 | 4.8 | 4.6 | 5.1 |
| CT | MAPQ >= 30 | 8.9 | 5.8 | 7.3 | 7.4 | 6.9 | 7.6 | 7.4 | 7.8 | 7.3 | 7.0 | 7.2 | 7.4 | 7.2 | 7.1 | 7.3 | 7.2 | 7.1 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.5 | 7.3 | 7.4 | 7.5 | 7.3 | 7.4 | 7.5 | 7.3 | 7.4 | 7.5 | 7.3 | 7.5 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 |
| CT | MAPQ >= 20 | 8.9 | 5.6 | 7.3 | 7.2 | 6.5 | 7.3 | 7.1 | 7.4 | 6.8 | 6.6 | 6.7 | 7.0 | 6.9 | 6.7 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 7.0 | 7.1 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 6.9 | 7.1 | 7.0 | 7.0 | 7.2 | 7.0 | 7.3 | 7.2 | 7.2 | 7.0 | 7.1 | 7.3 | 7.2 | 7.1 | 7.1 | 7.2 | 7.3 | 7.4 | 7.1 | 7.3 | 7.6 | 7.3 | 7.4 | 7.3 | 7.2 | 7.4 | 7.1 | 7.3 | 7.2 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.1 | 7.5 | 7.6 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.5 | 7.4 | 7.6 | 7.3 | 7.5 | 7.6 | 7.2 | 7.4 | 7.1 | 7.3 | 7.1 | 7.2 | 7.2 | 7.2 | 7.1 | 7.2 | 7.1 | 7.0 | 7.1 | 7.2 | 7.2 | 6.9 |
| CT | MAPQ < 3 | 8.1 | 5.3 | 6.7 | 6.7 | 6.1 | 7.1 | 6.8 | 7.3 | 6.9 | 6.4 | 6.7 | 6.9 | 6.6 | 6.4 | 6.6 | 6.4 | 6.4 | 6.6 | 6.8 | 6.6 | 6.7 | 6.9 | 6.6 | 6.8 | 6.9 | 6.6 | 6.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.6 | 6.7 | 6.6 | 6.8 | 7.0 | 6.6 | 6.8 | 6.8 | 6.5 | 6.7 | 6.7 | 6.7 | 6.7 | 6.8 | 6.5 | 6.6 | 6.7 | 6.6 | 6.8 | 6.8 | 6.6 | 6.7 | 6.8 | 6.4 | 6.8 | 6.8 | 6.7 | 6.6 | 6.9 | 6.6 | 6.5 | 6.9 | 6.4 | 6.7 | 6.7 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.4 | 6.3 | 6.5 | 6.5 | 6.5 | 6.3 | 6.5 | 6.4 | 6.3 | 6.6 | 6.3 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.1 | 6.2 | 6.2 | 6.0 | 6.2 |
| GA | MAPQ >= 30 | 5.6 | 7.3 | 6.9 | 6.9 | 7.1 | 6.4 | 6.3 | 5.6 | 6.5 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.2 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 |
| GA | MAPQ >= 20 | 5.7 | 7.2 | 6.8 | 6.9 | 7.4 | 6.5 | 6.4 | 5.4 | 6.6 | 6.4 | 6.4 | 6.7 | 6.6 | 6.5 | 6.3 | 6.3 | 6.3 | 6.3 | 6.5 | 6.3 | 6.2 | 6.5 | 6.2 | 6.5 | 6.4 | 6.6 | 6.7 | 6.4 | 6.3 | 6.6 | 6.4 | 6.2 | 6.4 | 6.3 | 6.1 | 6.4 | 6.4 | 6.2 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.1 | 6.3 | 6.1 | 6.3 | 6.4 | 6.2 | 6.3 | 6.4 | 6.1 | 6.2 | 6.2 | 6.3 | 6.4 | 6.3 | 6.3 | 6.5 | 6.1 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.4 | 6.1 | 6.2 | 6.3 | 6.1 | 6.0 | 6.1 | 5.9 | 6.2 | 6.1 | 6.0 | 6.1 | 6.0 | 6.2 | 6.1 | 6.3 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.1 | 6.1 | 6.2 | 5.9 | 6.0 | 6.0 | 6.2 | 6.0 | 6.1 |
| GA | MAPQ < 3 | 5.9 | 7.1 | 6.4 | 6.7 | 6.7 | 6.4 | 6.1 | 5.4 | 6.5 | 6.1 | 6.1 | 6.1 | 6.2 | 6.0 | 6.0 | 6.3 | 6.0 | 6.1 | 6.3 | 6.1 | 6.2 | 6.4 | 6.4 | 6.2 | 6.1 | 6.0 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.5 | 6.2 | 6.5 | 6.2 | 6.2 | 6.3 | 6.1 | 6.2 | 6.3 | 6.1 | 6.1 | 6.5 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.2 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.1 | 6.3 | 6.3 | 6.1 | 6.2 | 6.4 | 6.1 | 6.1 | 6.5 | 6.0 | 6.1 | 6.4 | 6.0 | 6.0 | 6.0 | 5.9 | 5.9 | 6.0 | 5.9 | 5.9 | 6.1 | 5.9 | 5.9 | 6.0 | 5.9 | 5.8 | 5.9 | 5.8 | 5.8 | 5.9 | 5.8 | 6.0 | 6.1 | 5.8 | 5.9 | 5.9 | 5.7 | 5.6 | 5.8 | 5.9 | 5.5 |
| GC | MAPQ >= 30 | 4.4 | 6.2 | 5.4 | 5.4 | 5.9 | 5.4 | 5.8 | 5.5 | 5.3 | 5.8 | 5.9 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.7 | 5.8 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.7 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 |
| GC | MAPQ >= 20 | 5.0 | 6.7 | 5.6 | 5.5 | 6.1 | 5.5 | 6.1 | 5.9 | 5.8 | 6.5 | 6.5 | 6.0 | 5.9 | 6.2 | 6.0 | 6.2 | 6.2 | 6.0 | 6.0 | 6.2 | 6.2 | 6.3 | 6.2 | 6.1 | 6.2 | 6.1 | 6.0 | 6.4 | 6.3 | 6.2 | 6.2 | 6.2 | 6.4 | 6.1 | 6.3 | 6.3 | 5.9 | 6.1 | 6.2 | 6.1 | 6.3 | 6.2 | 6.4 | 6.4 | 6.4 | 6.1 | 6.3 | 6.5 | 6.2 | 6.5 | 6.5 | 6.2 | 6.3 | 6.2 | 6.3 | 6.7 | 6.4 | 6.2 | 6.6 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.3 | 6.8 | 6.6 | 6.3 | 6.7 | 6.5 | 6.5 | 6.9 | 6.6 | 6.7 | 6.7 | 6.6 | 6.5 | 6.8 | 6.8 | 6.6 | 6.5 | 6.4 | 6.3 | 6.6 | 6.6 | 6.2 | 6.4 | 6.3 | 6.3 | 6.5 | 6.3 | 6.3 | 6.6 | 6.3 | 6.4 | 6.4 | 6.6 |
| GC | MAPQ < 3 | 5.6 | 7.7 | 6.3 | 6.4 | 7.2 | 6.4 | 7.0 | 6.8 | 6.5 | 7.2 | 7.7 | 7.0 | 6.9 | 7.1 | 7.0 | 6.9 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.1 | 7.2 | 7.3 | 7.1 | 7.2 | 7.3 | 7.1 | 7.1 | 7.2 | 7.3 | 7.0 | 7.2 | 7.3 | 7.1 | 7.2 | 7.3 | 7.0 | 7.1 | 7.1 | 7.0 | 7.1 | 7.2 | 7.3 | 7.2 | 7.2 | 7.2 | 7.3 | 7.1 | 7.2 | 7.2 | 7.2 | 7.1 | 7.3 | 7.3 | 7.1 | 7.2 | 7.0 | 7.0 | 7.1 | 7.1 | 6.9 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 7.1 | 6.9 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 6.8 | 6.9 | 6.9 | 6.9 | 7.0 | 6.8 | 6.8 | 7.0 | 6.9 |
| GG | MAPQ >= 30 | 9.1 | 8.4 | 8.5 | 7.7 | 7.2 | 6.9 | 6.3 | 5.8 | 6.2 | 6.3 | 6.5 | 6.4 | 6.4 | 6.5 | 6.7 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.7 | 6.7 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.4 | 7.5 | 7.5 | 7.5 | 7.6 |
| GG | MAPQ >= 20 | 9.7 | 8.8 | 8.8 | 8.4 | 7.5 | 7.3 | 6.7 | 6.3 | 7.0 | 7.1 | 7.2 | 7.0 | 7.4 | 6.9 | 7.2 | 7.5 | 7.3 | 7.3 | 7.5 | 7.2 | 7.3 | 7.2 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.2 | 7.2 | 7.1 | 7.2 | 7.2 | 7.2 | 7.5 | 7.7 | 7.4 | 7.3 | 7.2 | 7.1 | 7.3 | 7.2 | 7.4 | 7.3 | 7.3 | 7.4 | 7.5 | 7.3 | 7.2 | 7.3 | 7.1 | 7.3 | 7.2 | 7.0 | 7.2 | 7.6 | 7.2 | 7.1 | 7.4 | 7.2 | 7.2 | 7.7 | 7.6 | 7.5 | 7.4 | 7.5 | 7.5 | 7.7 | 7.4 | 7.4 | 7.7 | 7.5 | 7.6 | 7.7 | 7.4 | 7.7 | 7.6 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.9 | 7.8 | 7.9 | 8.3 | 8.1 | 7.8 | 8.0 | 7.9 | 8.1 | 8.2 | 8.1 | 8.1 | 8.6 | 8.6 | 8.4 | 8.9 | 8.9 | 8.9 |
| GG | MAPQ < 3 | 10.4 | 9.4 | 9.6 | 9.0 | 8.4 | 7.9 | 7.3 | 6.9 | 7.5 | 7.6 | 7.7 | 7.7 | 8.0 | 7.9 | 8.1 | 8.2 | 8.2 | 8.2 | 8.4 | 8.2 | 8.5 | 8.5 | 8.1 | 8.3 | 8.0 | 7.7 | 8.0 | 8.0 | 7.9 | 8.1 | 8.1 | 8.0 | 8.2 | 8.3 | 8.2 | 8.3 | 8.5 | 8.5 | 8.5 | 8.7 | 8.5 | 8.6 | 8.8 | 8.6 | 8.8 | 8.7 | 8.7 | 8.7 | 8.8 | 8.5 | 8.7 | 8.8 | 8.7 | 8.8 | 9.1 | 9.2 | 9.2 | 9.5 | 9.6 | 9.6 | 9.8 | 9.6 | 9.6 | 9.5 | 9.5 | 9.8 | 9.6 | 9.7 | 9.8 | 9.8 | 9.7 | 9.8 | 9.9 | 9.9 | 9.9 | 10.0 | 10.0 | 10.1 | 10.2 | 10.2 | 10.0 | 10.1 | 9.9 | 10.1 | 10.2 | 10.0 | 10.1 | 10.2 | 10.1 | 10.1 | 10.3 | 10.1 | 10.2 | 10.3 | 10.2 | 10.5 | 10.8 | 10.5 | 10.7 |
| GT | MAPQ >= 30 | 7.3 | 5.0 | 4.6 | 5.2 | 5.6 | 5.5 | 5.7 | 5.4 | 5.0 | 5.1 | 5.3 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 |
| GT | MAPQ >= 20 | 7.1 | 4.9 | 4.5 | 5.2 | 5.5 | 5.5 | 5.6 | 5.5 | 4.9 | 5.1 | 5.3 | 5.0 | 5.2 | 5.4 | 5.1 | 5.4 | 5.4 | 5.2 | 5.5 | 5.4 | 5.3 | 5.2 | 5.3 | 5.0 | 5.4 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 4.9 | 5.2 | 5.0 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.4 | 5.4 | 5.2 | 5.3 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.3 | 5.0 | 5.0 | 5.2 | 5.2 | 5.2 | 5.2 | 4.9 | 5.1 | 4.9 | 4.9 | 4.9 | 5.1 | 5.1 | 5.0 | 5.0 | 4.8 | 5.1 | 5.1 | 4.9 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.7 | 4.9 | 5.1 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 5.1 | 4.9 | 4.9 | 5.0 | 4.7 |
| GT | MAPQ < 3 | 7.7 | 5.1 | 4.6 | 5.7 | 5.8 | 5.8 | 5.9 | 5.5 | 5.1 | 5.2 | 5.4 | 5.2 | 5.4 | 5.6 | 5.4 | 5.5 | 5.3 | 5.4 | 5.3 | 5.3 | 5.2 | 5.4 | 5.1 | 5.1 | 5.3 | 5.2 | 5.1 | 5.2 | 5.3 | 5.0 | 5.3 | 5.1 | 4.9 | 5.2 | 5.1 | 5.0 | 5.2 | 5.1 | 5.1 | 5.2 | 5.4 | 5.3 | 5.3 | 5.3 | 4.9 | 5.2 | 5.0 | 5.0 | 5.3 | 5.3 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 4.8 | 4.9 | 4.9 | 4.9 | 5.0 | 5.1 | 5.0 | 5.2 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 4.9 | 5.0 | 4.8 | 5.0 | 5.0 | 4.8 | 5.0 | 4.9 | 4.8 | 4.9 | 4.8 | 4.7 | 4.9 | 4.9 | 4.8 | 5.0 | 4.9 | 4.8 |
| TA | MAPQ >= 30 | 3.3 | 5.0 | 4.3 | 4.7 | 4.6 | 4.5 | 4.7 | 4.7 | 5.1 | 4.6 | 4.4 | 4.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.5 | 4.6 | 4.5 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.5 | 4.5 |
| TA | MAPQ >= 20 | 2.9 | 4.8 | 4.0 | 4.5 | 4.3 | 4.2 | 4.6 | 4.4 | 5.0 | 4.3 | 4.1 | 4.4 | 4.4 | 4.7 | 4.4 | 4.5 | 4.6 | 4.6 | 4.5 | 4.5 | 4.6 | 4.4 | 4.3 | 4.4 | 4.2 | 4.3 | 4.3 | 4.4 | 4.3 | 4.6 | 4.2 | 4.4 | 4.5 | 4.3 | 4.5 | 4.5 | 4.4 | 4.3 | 4.7 | 4.4 | 4.6 | 4.8 | 4.4 | 4.3 | 4.3 | 4.3 | 4.4 | 4.3 | 4.4 | 4.4 | 4.3 | 4.3 | 4.4 | 4.4 | 4.4 | 4.5 | 4.4 | 4.2 | 4.3 | 4.5 | 4.4 | 4.2 | 4.4 | 4.5 | 4.5 | 4.5 | 4.2 | 4.2 | 4.3 | 4.4 | 4.2 | 4.2 | 4.5 | 4.2 | 4.4 | 4.1 | 4.3 | 4.4 | 4.3 | 4.2 | 4.2 | 4.1 | 4.3 | 4.2 | 4.2 | 4.1 | 4.1 | 4.2 | 4.2 | 4.2 | 4.0 | 4.1 | 4.4 | 4.2 | 4.4 | 4.2 | 4.0 | 4.1 | 4.2 |
| TA | MAPQ < 3 | 2.7 | 4.3 | 3.6 | 3.9 | 3.8 | 3.8 | 4.0 | 3.9 | 4.3 | 3.9 | 3.7 | 3.8 | 3.9 | 3.9 | 4.0 | 4.1 | 4.0 | 3.9 | 4.0 | 3.8 | 3.8 | 3.8 | 3.9 | 3.8 | 3.9 | 4.0 | 4.0 | 3.8 | 3.8 | 3.8 | 3.7 | 3.9 | 3.8 | 3.7 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.6 | 3.7 | 3.6 | 3.7 | 3.6 | 3.7 | 3.7 | 3.8 | 3.9 | 3.7 | 3.9 | 3.7 | 3.7 | 3.7 | 3.6 | 3.6 | 3.6 | 3.7 | 3.8 | 3.7 | 3.7 | 3.8 | 3.6 | 3.7 | 3.6 | 3.7 | 3.6 | 3.6 | 3.7 | 3.8 | 3.7 | 3.6 | 3.7 | 3.6 | 3.7 | 3.6 | 3.5 | 3.6 | 3.8 | 3.7 | 3.6 | 3.8 | 3.5 | 3.6 | 3.5 | 3.6 | 3.6 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.4 |
| TC | MAPQ >= 30 | 2.9 | 7.2 | 6.0 | 5.7 | 6.3 | 6.1 | 6.8 | 6.7 | 6.6 | 6.3 | 6.4 | 6.2 | 6.3 | 6.4 | 6.2 | 6.2 | 6.4 | 6.2 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.4 | 6.3 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.5 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.1 | 6.3 | 6.2 |
| TC | MAPQ >= 20 | 2.9 | 7.5 | 6.0 | 5.7 | 6.5 | 6.2 | 6.9 | 6.7 | 6.5 | 6.2 | 6.5 | 6.3 | 6.2 | 6.3 | 6.2 | 6.0 | 6.3 | 6.1 | 6.0 | 6.2 | 6.0 | 5.9 | 6.3 | 6.3 | 6.1 | 6.3 | 6.2 | 6.1 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.1 | 6.3 | 6.2 | 6.2 | 6.4 | 6.2 | 6.4 | 6.3 | 6.4 | 6.0 | 6.2 | 6.4 | 6.3 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.0 | 6.3 | 6.3 | 6.2 | 6.5 | 6.3 | 6.2 | 6.2 | 6.5 | 6.2 | 6.4 | 6.4 | 6.2 | 6.5 | 6.2 | 6.2 | 6.5 | 6.5 | 6.1 | 6.3 | 6.2 | 6.2 | 6.6 | 6.3 | 6.3 | 6.4 | 6.4 | 6.0 | 6.4 | 6.4 | 5.9 | 6.4 | 6.3 | 6.2 | 6.4 | 6.2 | 6.4 | 6.5 | 6.1 | 6.1 | 6.2 | 6.1 | 6.1 | 6.1 | 6.3 |
| TC | MAPQ < 3 | 2.7 | 7.0 | 6.0 | 5.3 | 6.2 | 5.9 | 6.6 | 6.6 | 6.5 | 6.0 | 6.1 | 6.0 | 5.9 | 6.2 | 5.8 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 | 5.9 | 5.8 | 6.2 | 5.9 | 5.8 | 6.2 | 5.9 | 5.8 | 6.1 | 6.0 | 5.9 | 6.1 | 5.9 | 5.8 | 6.0 | 5.9 | 5.8 | 6.2 | 5.9 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.3 | 6.0 | 6.1 | 5.8 | 5.9 | 6.1 | 6.0 | 6.0 | 6.4 | 6.0 | 5.7 | 6.1 | 5.8 | 5.8 | 6.1 | 5.9 | 5.7 | 5.9 | 6.0 | 5.7 | 6.0 | 5.8 | 5.7 | 6.1 | 5.9 | 5.7 | 5.8 | 6.0 | 5.8 | 5.9 | 5.9 | 5.7 | 5.9 | 5.9 | 5.7 | 6.0 | 6.1 | 5.8 | 6.0 | 6.0 | 5.8 | 6.0 | 6.2 | 5.8 | 6.0 | 6.0 | 5.9 | 6.0 | 5.9 | 5.7 | 6.0 | 5.8 | 5.6 | 6.0 | 5.7 |
| TG | MAPQ >= 30 | 5.3 | 8.3 | 7.0 | 7.7 | 7.5 | 7.3 | 7.3 | 8.0 | 8.1 | 7.7 | 7.3 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 |
| TG | MAPQ >= 20 | 5.0 | 8.0 | 6.9 | 7.3 | 7.4 | 7.1 | 7.3 | 8.0 | 8.2 | 7.5 | 7.1 | 7.5 | 7.2 | 7.5 | 7.7 | 7.5 | 7.4 | 7.7 | 7.3 | 7.5 | 7.6 | 7.3 | 7.5 | 7.7 | 7.8 | 7.5 | 7.7 | 7.7 | 7.4 | 7.5 | 7.3 | 7.3 | 7.5 | 7.2 | 7.4 | 7.3 | 7.5 | 7.4 | 7.5 | 7.3 | 7.5 | 7.6 | 7.4 | 7.6 | 8.0 | 7.4 | 7.3 | 7.6 | 7.4 | 7.6 | 7.6 | 7.3 | 7.5 | 7.9 | 7.4 | 7.5 | 7.6 | 7.6 | 7.6 | 7.7 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.7 | 7.3 | 7.4 | 7.5 | 7.3 | 7.3 | 7.5 | 7.3 | 7.5 | 7.5 | 7.2 | 7.2 | 7.4 | 7.3 | 7.5 | 7.6 | 7.4 | 7.4 | 7.6 | 7.5 | 7.4 | 7.5 | 7.2 | 7.5 | 7.4 | 7.4 | 7.2 | 7.3 | 7.1 | 7.0 | 7.4 | 7.2 | 7.1 | 7.2 |
| TG | MAPQ < 3 | 5.0 | 8.3 | 6.9 | 7.4 | 7.6 | 7.2 | 7.3 | 7.9 | 8.1 | 7.7 | 7.2 | 7.5 | 7.6 | 7.5 | 7.5 | 7.4 | 7.5 | 7.6 | 7.3 | 7.7 | 7.6 | 7.3 | 7.5 | 7.4 | 7.3 | 7.6 | 7.5 | 7.3 | 7.4 | 7.6 | 7.4 | 7.4 | 7.4 | 7.2 | 7.4 | 7.5 | 7.3 | 7.6 | 7.4 | 7.4 | 7.3 | 7.6 | 7.2 | 7.4 | 7.6 | 7.2 | 7.4 | 7.4 | 7.2 | 7.5 | 7.4 | 7.2 | 7.3 | 7.5 | 7.4 | 7.3 | 7.3 | 7.2 | 7.4 | 7.4 | 7.2 | 7.3 | 7.2 | 7.1 | 7.4 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.2 | 7.2 | 6.9 | 7.0 | 7.0 | 7.1 | 7.0 | 7.2 | 7.0 | 7.0 | 7.1 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 6.9 | 6.8 | 6.8 | 7.0 | 6.7 | 6.8 | 6.9 | 6.6 | 6.7 | 6.8 | 6.6 | 6.7 | 7.0 |
| TT | MAPQ >= 30 | 4.7 | 8.2 | 7.4 | 7.3 | 7.3 | 8.0 | 8.8 | 8.9 | 8.6 | 8.0 | 8.1 | 8.2 | 8.2 | 8.0 | 7.7 | 7.6 | 7.5 | 7.4 | 7.4 | 7.5 | 7.5 | 7.6 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.3 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 |
| TT | MAPQ >= 20 | 4.5 | 7.9 | 6.9 | 6.9 | 6.9 | 7.7 | 8.2 | 8.3 | 8.1 | 7.3 | 7.4 | 7.5 | 7.6 | 7.4 | 7.2 | 7.1 | 7.0 | 6.8 | 7.1 | 7.1 | 7.1 | 7.4 | 7.5 | 7.5 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.0 | 7.0 | 7.1 | 7.0 | 6.9 | 6.9 | 6.9 | 6.8 | 7.1 | 6.8 | 6.9 | 7.2 | 6.8 | 7.0 | 7.1 | 6.9 | 6.9 | 7.0 | 7.1 | 7.1 | 7.0 | 6.9 | 6.8 | 6.8 | 6.7 | 6.8 | 6.8 | 7.0 | 7.0 | 7.1 | 6.8 | 6.7 | 6.8 | 6.7 | 6.8 | 6.9 | 6.6 | 6.7 | 6.7 | 6.4 | 6.6 | 6.7 | 6.7 | 6.7 | 6.9 | 6.8 | 6.9 | 6.9 | 6.9 | 7.0 | 6.8 | 6.8 | 7.0 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 6.9 | 7.0 | 6.9 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 6.9 |
| TT | MAPQ < 3 | 4.6 | 7.8 | 6.9 | 6.8 | 6.9 | 7.5 | 8.2 | 8.0 | 7.7 | 6.9 | 6.9 | 7.0 | 7.1 | 7.0 | 7.1 | 6.9 | 6.8 | 6.7 | 6.8 | 6.8 | 6.7 | 6.9 | 7.0 | 6.8 | 7.0 | 7.0 | 6.8 | 6.9 | 6.7 | 6.7 | 6.7 | 6.6 | 6.5 | 6.5 | 6.5 | 6.4 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.4 | 6.5 | 6.7 | 6.6 | 6.4 | 6.5 | 6.6 | 6.4 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.4 | 6.5 | 6.4 | 6.4 | 6.7 | 6.8 | 6.6 | 6.7 | 6.7 | 6.5 | 6.8 | 6.8 | 6.8 | 6.8 | 6.9 | 6.7 | 6.6 | 6.7 | 6.6 | 6.8 | 6.9 | 6.9 | 6.9 | 7.0 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.9 | 6.8 | 6.9 | 6.8 | 6.6 |
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AG GG AA CT CA |
GG TG AA TT AG |
GG AA CA TT CT |
AG AA TG GG CT |
AA AG TG TT GG |
TT AA CT AG TG |
TT AA CT TG CA |
TT TG CT AA CA |
TT TG CA AA CT |
AA TT AG TG CA |
TT AA AG TG CA |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT TG CA AG |
TT AA TG CA AG |
TG AA TT CA AG |
CA TG AG AA TT |
TG CA AA TT AG |
TG CA AA TT AG |
CA TG TT AA AG |
TT AA CA TG CT |
TT TG AA CA AG |
TT CA AA TG CT |
TT AA CA TG CT |
TT TG AA CA CT |
TT TG CA AA CT |
TT AA CA TG CT |
TT AA TG CA AG |
CA TG TT AA AG |
CA AA TG TT CT |
TG AA CA TT AG |
CA TG AA TT AG |
CA AA TG TT AG |
TG CA AA TT AG |
CA TG AA AG TT |
CA AA TG TT AG |
TG AA CA TT AG |
CA TG AA TT AG |
CA AA TG TT CT |
TG AA CA TT AG |
CA TG AA TT AG |
CA AA TT TG CT |
AA TT TG CA AG |
CA TG AA TT AG |
CA AA TT TG CT |
TG TT AA CA AG |
CA TG AA TT AG |
CA AA TG TT CT |
TG TT CA AA AG |
CA TG AA TT AG |
CA AA TG TT CT |
TG CA AA TT AG |
CA TG AA TT AG |
CA AA TG TT CT |
TG AA CA TT AG |
CA TG AA TT CT |
CA AA TG TT CT |
TG CA AA TT AG |
CA TG AA TT CT |
CA AA TT TG CT |
TG CA AA TT AG |
CA TG AA TT CT |
CA AA TG TT CT |
TG TT AA CA AG |
CA TG AA TT CT |
CA AA TT TG CT |
TG CA AA TT AG |
CA TG CT AA TT |
CA AA TG TT CT |
AA TG CA TT AG |
CA TG AA TT AG |
CA AA TG TT CT |
AA TG TT CA AG |
CA TG AA TT CT |
CA AA TT TG CT |
AA TT TG CA AG |
CA TG AA TT AG |
AA CA TT TG CT |
TT AA TG CA AG |
CA TG AA TT AG |
CA AA TT TG CT |
TT TG AA CA AG |
CA TG AA TT CT |
CA AA TT TG CT |
TT AA TG CA AG |
CA TG AA TT CT |
AA CA TT TG CT |
TT AA TG CA AG |
CA TG AA TT CT |
AA TT CA TG CT |
TT AA TG CA AG |
CA TG TT AA CT |
TT CA AA TG CT |
TT AA TG GG CA |
TT GG CA AA TG |
TT AA GG CA TG |
TT GG AA TG CA |
GG TT AA CA TG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
GG CT AG CA AA |
GG TG TT TC AA |
GG CA CT AA CC |
GG AG CA AA TG |
AA GG TG GA AG |
TT AG CA CT GG |
TT TG CT CA TC |
TT TG CT CA AA |
CA TG TT AA GG |
AA AG TG TT CA |
CA TT AG GG AA |
CA TG TT AG GG |
TT AG GG AA CA |
TG TT AG CA AA |
TG CA AG GG TT |
CA TG GG AG TT |
CA TG GG AG AA |
TG CA AG GG CC |
CA GG AG TG TT |
TG AG CA GG TT |
CA TG AG GG TT |
CA TT TG AG GG |
TG TT AG CA AA |
TG CA TT AG GG |
TG CA AA AG TT |
AG TG CA TT AA |
TG CA AG AA GG |
TG AA CA GG AG |
TG AG CA TT GG |
CA TG AG GG AA |
CA AA TG GG AG |
CA TG AG GG TT |
CA TG GG AG CC |
CA GG AG TG CT |
GG CA TG AG CC |
CA GG CC TG CT |
CA TG GG CC CT |
TG CA GG AG CC |
CA TG CT AG GG |
CA TG GG CT AG |
TG TT CA GG AG |
TG GG CA AG CC |
CA TG GG AG CT |
TG CT GG AG TT |
TG CA GG CT AG |
CA GG TG AG CT |
TG GG AG CT CA |
TG CA CC CT GG |
CA TG CT GG CC |
TG CT CA AG GG |
CA TG GG CT CC |
CA CC TG CT GG |
CT TG CC AG CA |
TG CA CC CT GG |
GG CA CT TG AG |
TG CT AG GG CA |
TG CA CC CT GG |
TG CT CA GG AG |
TG GG CT TT CC |
TG CA CC CT GG |
GG CA TG AG CT |
GG TG AG CA CT |
GG TG CA CT CC |
TG GG CT CA AG |
TG GG CA CT AG |
TG GG CA CT CC |
GG CA TG CT AG |
GG TG AG CC CA |
CA CT TG GG CC |
GG CT CA TG AG |
GG TG CT AG CA |
CA GG TG CT CC |
GG CA CT TG AG |
TG GG CA CT AG |
GG CA TG CT CC |
GG CA CT TG CC |
GG CA CT TG CC |
CC CT CA GG TG |
GG CT CA CC TG |
CT TG GG CC CA |
CA TG GG CC CT |
GG CA CT TG CC |
GG CT TG CA CC |
GG TG CA CC CT |
GG TG CT CA CC |
GG TG CC CA CT |
GG CA TG CT CC |
GG CA CC TG CT |
GG TG CA CC CT |
GG TG CC CA CT |
GG CC TG CA CT |
GG CC TG CT CA |
GG CC CA TG CT |
GG CC CA AG TG |
GG CC TT CA CT |
GG CC TG CA CT |
GG CC CT TG CA |
GG CC CT TG AG |
GG CC CA TG TT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
GG AG CT CA GT |
GG TG TT GC GA |
GG CC CA TG TT |
GG TG AG CA TT |
GG TG GC TT AG |
GG TT TG CT CC |
TT GG TG GC CC |
TT TG CT CC CA |
TG TT CA GG CT |
TG GG AG AA GC |
GG GC TG CC AG |
GG TG CA CC GC |
GG TG CA TT CC |
GG TG CC GC AG |
GG TG CA CC TT |
GG TG CA CC TT |
GG TG CC CA AG |
GG TG CC CA AG |
GG TG CC CA GC |
GG TG CC CA GC |
GG TG CC CA AG |
GG TG CC CA GC |
GG TG CC GC TT |
GG CC TG CA GC |
GG TG CC CA GC |
GG TG CC GC TT |
GG CC TG CA GC |
GG TG CA CC GC |
GG TG CC GC CA |
GG TG CA CC GC |
GG TG CA AG GC |
GG TG GC CA CC |
GG CA TG CC GC |
GG CA CC TG GC |
GG CC TG GC CA |
GG TG CC CA GC |
GG TG CA CC GC |
GG TG CC GC CA |
GG CC TG GC CA |
GG TG CC CA GC |
GG CC TG GC CA |
GG TG CC GC CA |
GG CC TG CA GC |
GG CC TG GC CA |
GG TG CC GC CA |
GG CC GC TG CA |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG GC CA |
GG CC TG GC CA |
GG CC TG CA GC |
GG CA GC TG CC |
GG CC TG GC CA |
GG CC TG CA GC |
GG TG CC CA GC |
GG CC TG GC CA |
GG CC GC TG CA |
GG CC TG CA GC |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG GC CA |
GG CC TG GC AG |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG GC AG |
GG CC TG GC CA |
GG CC TG GC CA |
GG CC TG GC AG |
GG CC TG CA GC |
GG CC TG GC CA |
GG CC TG GC TT |
GG CC TG CA GC |
GG CC GC CA TG |
GG CC GC TG CA |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG GC TT |
GG CC TG GC CA |
GG CC TG GC CA |
GG CC TG GC TT |
GG CC GC TG CA |
GG CC TG CA GC |
GG CC GC TG CA |
GG CC GC TG CA |
GG CC CA GC TG |
GG CC GC TT TG |
GG CC GC TG TT |
GG CC CA TT GC |
GG CC TT GC TG |
GG CC GC TG CA |
GG CC CA GC TT |
GG CC GC TT CA |
GG CC CA TG GC |
GG CC CA GC TT |
GG CC GC TT TG |
GG CC CA TG TT |
GG CC TT GC CA |
GG CC GC TT CA |
GG CC TG GC CA |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ < 3 | ||||||
|---|---|---|---|---|---|---|---|---|
| Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value |
| GCTGGGATTA | 462294 | 0.0e+00 | CTCCTGCCTC | 27632 | 0.0e+00 | TTTTTTTTTT | 2481890 | 0.0e+00 |
| CCTCAGCCTC | 457302 | 0.0e+00 | TCCTGCCTCA | 25756 | 0.0e+00 | AAAAAAAAAA | 2013808 | 0.0e+00 |
| TGTAATCCCA | 448022 | 0.0e+00 | GTGGCCTTGG | 22866 | 0.0e+00 | GGGGGGGGGG | 1437144 | 0.0e+00 |
| CTGGGATTAC | 440500 | 0.0e+00 | GGTGGCCTTG | 21875 | 0.0e+00 | CCCCCCCCCC | 506069 | 0.0e+00 |
| CCTGTAATCC | 438809 | 0.0e+00 | GTGGAAGTGA | 20872 | 0.0e+00 | GGCGGGGGGG | 272069 | 0.0e+00 |
| CCCAGGCTGG | 399533 | 0.0e+00 | AGTGGAAGTG | 20611 | 0.0e+00 | CGGGGGGGGG | 247858 | 0.0e+00 |
| GCCTCAGCCT | 366652 | 0.0e+00 | CCTAGCCATG | 20232 | 0.0e+00 | GGGGGGGGGC | 246933 | 0.0e+00 |
| CTCCCAAAGT | 360672 | 0.0e+00 | ATAGTGGAAG | 19813 | 0.0e+00 | GCGGGGGGGG | 227638 | 0.0e+00 |
| GATTACAGGC | 353467 | 0.0e+00 | TAGTGGAAGT | 19683 | 0.0e+00 | TGCCGTCCTC | 215015 | 0.0e+00 |
| TCAGCCTCCC | 337553 | 0.0e+00 | TGGAAGTGAG | 19679 | 0.0e+00 | CTTCTTCAAG | 211595 | 0.0e+00 |
| CAAAGTGCTG | 334961 | 0.0e+00 | CCTCCTCGGA | 19669 | 0.0e+00 | GTGGCGGGGG | 210373 | 0.0e+00 |
| CACTTTGGGA | 332484 | 0.0e+00 | GGAAGTGAGC | 19653 | 0.0e+00 | CTGCTGGTAG | 208556 | 0.0e+00 |
| CCCAAAGTGC | 331349 | 0.0e+00 | AACTAACCTC | 19622 | 0.0e+00 | GTTCTGCTGG | 208200 | 0.0e+00 |
| CCAGCCTGGG | 328945 | 0.0e+00 | GTGAGCTACA | 19564 | 0.0e+00 | TCAATAAACC | 208122 | 0.0e+00 |
| CCAGGCTGGA | 328778 | 0.0e+00 | GAGCTACAAC | 19454 | 0.0e+00 | CTGGTAGTGG | 204831 | 0.0e+00 |
| AGTGCTGGGA | 327864 | 0.0e+00 | GAAGTGAGCT | 19439 | 0.0e+00 | TCTGCTGGTA | 203627 | 0.0e+00 |
| TTTTGTATTT | 326271 | 0.0e+00 | AAGTGAGCTA | 19377 | 0.0e+00 | TTCTGCTGGT | 202769 | 0.0e+00 |
| AAAGTGCTGG | 325220 | 0.0e+00 | AGTGAGCTAC | 19366 | 0.0e+00 | GCTGGTAGTG | 200405 | 0.0e+00 |
| AAGTGCTGGG | 321745 | 0.0e+00 | TGCCACAACT | 19332 | 0.0e+00 | TGCTGGTAGT | 196493 | 0.0e+00 |
| GTGCTGGGAT | 320581 | 0.0e+00 | CAACTAACCT | 19274 | 0.0e+00 | TGGTAGTGGT | 191832 | 0.0e+00 |