gfp_k4

Mapping stats: 91% aligned (107.9M aligned out of 118.2M total) 

Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.

Mean Base Quality

Mean base quality of reads with low and high mapping quality.

Error Profile MAPQ >= 30

Mismatches Insertions Deletions

Error Profile MAPQ >= 20

Mismatches Insertions Deletions

Error Profile MAPQ >= 10

Mismatches Insertions Deletions

Error Profile MAPQ >= 3

Mismatches Insertions Deletions

Error Profile MAPQ < 3

Mismatches Insertions Deletions

Nucleotide Over-representation along read

Mer Q 1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
AAMAPQ >= 30 5.9 6.5 6.2 5.3 5.3 5.2 5.1 4.9 4.9 5.1 5.1 5.0 5.0 5.0 4.9 4.9 4.8 4.7 4.7 4.7 4.7 4.8 4.8 4.8 4.8 4.8 4.7 4.7 4.6 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 5.4 5.4 4.7 4.7 4.6 4.6 4.6 4.6 4.5 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.6 4.6
AAMAPQ >= 20 5.5 6.8 6.4 4.9 4.9 4.7 4.7 4.5 4.4 4.6 4.6 4.6 4.5 4.5 4.8 4.8 4.3 4.2 4.2 4.2 4.2 4.2 4.3 4.3 4.3 4.3 4.3 4.2 4.1 4.1 4.2 4.2 4.2 4.2 4.2 4.3 4.3 4.2 4.1 4.1 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.1 4.2 4.2 4.2 5.4 5.4 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.4 4.4 4.5 4.4 4.4 4.5 4.5 4.5 4.4 4.4 4.5 4.5
AAMAPQ >= 10 6.4 7.4 6.9 5.7 5.8 5.6 5.7 5.4 5.4 5.6 5.7 5.7 5.5 5.3 5.2 5.2 5.2 5.0 5.1 5.1 5.0 5.1 5.3 5.2 5.2 5.2 5.2 5.1 5.1 5.2 5.1 5.2 5.2 5.2 5.3 5.3 5.5 5.3 5.3 5.2 5.4 5.3 5.2 5.2 5.2 5.5 5.6 5.7 5.6 5.5 5.5 5.6 6.3 6.4 5.8 5.8 5.8 5.7 5.6 5.7 5.8 5.9 5.9 6.1 6.1 6.0 6.0 6.1 5.9 6.0 6.1 6.3 6.3 6.2
AAMAPQ >= 3 6.3 7.3 6.8 5.7 5.6 5.5 5.5 5.6 5.8 5.7 5.5 5.6 5.5 5.6 5.5 5.3 5.3 4.9 4.9 5.0 5.0 5.1 5.2 5.2 5.1 5.2 5.2 4.8 5.2 5.5 5.2 5.4 5.5 5.3 5.5 5.7 5.8 5.5 5.4 5.4 5.6 5.4 5.0 5.0 5.3 5.6 6.0 6.1 5.9 5.9 5.8 5.8 6.6 6.9 6.4 6.3 6.4 6.1 6.0 6.3 6.4 6.6 6.9 6.7 6.7 6.6 6.4 6.5 6.6 6.8 6.7 6.6 6.6 6.5
AAMAPQ < 3 5.8 7.2 6.8 5.2 5.2 5.1 5.1 4.9 4.8 5.0 5.1 5.1 5.0 4.9 4.9 4.9 4.7 4.7 4.6 4.7 4.7 4.7 4.7 4.8 4.7 4.7 4.7 4.7 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.8 4.7 4.7 4.6 4.7 4.7 4.7 4.7 4.7 4.8 4.8 4.8 4.7 4.7 4.7 4.8 6.0 6.1 4.9 4.9 4.9 4.8 4.8 4.8 4.8 4.8 4.9 4.9 5.0 5.0 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9
AAUnmapped 5.4 4.4 4.0 4.7 4.7 4.6 35.0 4.5 4.4 4.5 4.6 4.6 4.7 4.5 4.5 4.5 4.4 4.4 4.3 4.4 4.4 4.4 4.5 34.6 4.4 4.3 4.4 4.3 4.2 4.3 4.3 4.4 4.4 4.3 4.4 4.3 4.4 4.3 4.3 4.4 4.2 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.2 4.2 4.3 3.5 3.4 4.3 4.3 4.3 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.3 4.6 33.2 34.1 34.1 33.7 33.4 31.1 27.3 24.4
ACMAPQ >= 30 4.8 4.1 5.9 4.6 4.8 4.5 4.7 4.5 4.5 4.5 4.6 4.5 4.5 4.5 4.5 4.7 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.6 4.5 4.5 4.6 4.5 4.6 4.6 4.6 4.6 3.9 6.1 4.6 4.6 4.5 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.5 4.5 4.5
ACMAPQ >= 20 4.7 3.4 7.0 4.5 4.6 4.4 4.5 4.3 4.3 4.4 4.5 4.3 4.3 4.3 4.2 5.2 4.4 4.3 4.3 4.3 4.4 4.3 4.3 4.2 4.2 4.3 4.2 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.2 4.2 4.2 4.2 4.3 4.3 4.2 4.2 3.1 7.1 4.1 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.1 4.2 4.1 4.8 4.1 4.2 4.1 4.2
ACMAPQ >= 10 4.7 4.1 5.6 4.8 4.8 4.8 4.9 4.6 4.7 4.7 5.0 4.7 4.6 4.7 4.9 4.9 4.9 4.7 4.7 4.6 4.9 4.8 4.7 4.6 4.6 4.8 4.7 4.6 4.8 4.8 4.8 5.0 4.9 4.7 4.6 4.9 4.7 4.7 4.8 4.7 4.8 4.9 4.6 4.6 4.6 4.5 4.6 4.7 4.9 4.9 4.7 4.9 4.1 6.1 4.8 4.9 4.9 5.0 5.0 5.0 5.2 5.1 5.1 5.1 5.0 5.0 4.9 4.9 5.0 4.9 4.9 4.9 4.9 5.0
ACMAPQ >= 3 4.8 4.0 5.4 4.8 4.8 4.8 4.9 4.6 4.8 5.0 5.1 4.8 4.8 4.9 5.3 4.9 4.9 4.8 5.0 4.9 5.2 5.0 4.7 4.8 4.9 4.9 5.0 5.0 5.0 5.0 5.1 5.3 4.9 4.8 4.9 4.9 4.8 5.1 5.0 4.8 5.4 5.0 4.8 4.6 4.7 4.7 4.7 4.7 5.0 4.8 4.8 4.8 4.0 5.9 4.5 4.8 4.8 5.1 5.1 5.0 5.4 5.1 5.1 5.3 4.9 5.0 5.0 4.9 4.9 5.0 5.0 5.1 5.2 5.3
ACMAPQ < 3 4.8 4.1 6.6 4.7 4.8 4.6 4.7 4.5 4.5 4.6 4.7 4.6 4.6 4.6 4.6 4.8 4.7 4.6 4.6 4.6 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.7 4.6 4.6 4.6 4.6 4.6 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.7 4.6 4.6 3.9 6.9 4.6 4.6 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.6 4.6
ACUnmapped 3.8 3.0 2.8 3.4 3.6 3.4 3.5 3.4 3.3 3.3 3.4 3.3 3.3 3.3 3.3 3.6 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.2 3.2 3.2 3.2 3.2 3.3 3.2 3.2 3.4 33.1 3.2 3.2 3.1 3.2 3.2 3.3 33.0 3.2 3.1 3.1 3.1 3.1 3.1 3.1 3.1 3.1 3.2 3.1 3.1 2.7 2.6 3.1 3.2 3.1 3.1 3.1 3.2 3.1 3.2 3.1 3.1 3.1 3.1 3.2 3.2 3.2 3.5 3.4 4.3 4.8 4.9
AGMAPQ >= 30 8.3 6.9 8.5 7.7 7.5 7.3 7.0 7.0 7.0 7.1 7.2 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.1 7.1 6.1 8.3 7.1 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.1 7.1 7.1 7.1
AGMAPQ >= 20 8.3 5.8 9.4 7.5 7.2 7.1 6.8 6.9 6.8 6.9 7.0 6.8 6.9 6.9 6.8 7.6 7.0 7.0 6.9 6.9 6.9 6.8 7.0 7.0 7.0 7.0 7.0 7.0 7.0 7.0 6.9 6.9 7.0 6.9 6.9 6.9 6.9 6.9 6.9 6.8 6.8 6.8 6.8 6.9 6.9 6.9 6.9 6.9 7.0 6.9 6.9 6.7 5.1 9.4 6.7 6.8 6.7 6.6 6.7 6.6 6.5 6.5 6.5 6.4 6.4 6.4 6.4 6.5 6.5 7.0 6.5 6.6 6.4 6.4
AGMAPQ >= 10 8.5 6.9 8.4 7.8 7.5 7.3 7.1 7.4 7.3 7.4 7.4 7.2 7.2 7.4 7.3 7.2 7.3 7.4 7.4 7.3 7.3 7.1 7.6 7.5 7.7 7.4 7.5 7.7 7.4 7.6 7.4 7.4 7.5 7.2 7.2 7.4 7.3 7.3 7.3 7.3 7.1 7.2 7.1 7.3 7.1 7.3 7.4 7.2 7.5 7.4 7.2 7.1 6.2 8.4 7.3 7.2 7.3 7.3 7.3 7.3 7.2 7.3 7.2 7.1 7.1 7.2 7.4 7.5 7.6 7.3 7.4 7.6 7.5 7.5
AGMAPQ >= 3 8.6 6.5 7.9 7.3 7.5 7.2 7.4 7.5 7.6 7.6 7.7 7.7 7.6 7.5 7.6 7.3 7.7 8.0 7.8 7.5 7.5 7.7 7.9 7.8 7.8 7.5 7.6 7.7 7.4 7.9 7.8 8.1 7.8 7.5 7.5 7.5 7.6 7.5 7.3 7.0 6.9 6.9 6.9 7.2 7.0 7.3 7.6 7.6 7.9 7.4 7.3 7.4 6.6 8.6 7.6 7.8 7.4 7.7 7.4 7.4 7.6 7.6 7.5 7.4 7.3 7.6 7.6 7.7 7.9 7.6 8.0 8.0 7.6 7.4
AGMAPQ < 3 8.3 6.8 9.2 7.6 7.4 7.2 7.0 7.1 7.0 7.1 7.2 7.1 7.1 7.1 7.1 7.2 7.2 7.3 7.2 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.3 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.2 7.2 7.2 7.3 7.2 7.3 7.3 7.2 7.2 6.1 9.1 7.2 7.3 7.2 7.3 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.3 7.3 7.2 7.2 7.2 7.2 7.1
AGUnmapped 5.2 4.0 3.8 4.8 4.7 4.5 4.5 34.8 4.4 34.9 4.5 4.4 4.4 4.4 4.5 4.5 4.6 34.8 4.4 4.6 34.6 4.4 4.4 4.3 4.4 4.4 4.4 4.5 4.4 4.6 34.4 4.4 4.4 4.3 4.3 4.3 4.3 4.4 4.3 4.3 4.4 4.2 4.2 4.2 4.2 4.2 4.3 4.2 4.3 4.3 4.3 4.2 3.5 3.5 4.1 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.1 4.2 4.2 4.3 4.3 4.4 4.5 4.4 5.1 5.6 5.8
ATMAPQ >= 30 3.7 2.9 4.5 3.4 3.3 3.2 3.3 3.2 3.1 3.1 3.1 3.1 3.1 3.1 3.1 3.1 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 2.9 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 2.9 2.9 3.0 3.0 3.0 3.0 3.0 3.0 3.0 2.9 2.9 2.9 2.9 2.9 2.5 3.9 3.0 3.0 3.0 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9
ATMAPQ >= 20 3.8 2.6 5.3 3.4 3.3 3.2 3.2 3.1 3.0 3.1 3.1 3.1 3.1 3.1 2.9 3.6 3.0 3.0 3.0 3.0 3.0 2.9 2.9 3.0 3.0 3.0 2.9 2.9 2.9 2.8 2.8 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.8 2.8 2.8 2.9 2.9 2.9 2.9 2.9 2.9 2.8 2.8 2.9 2.8 2.9 2.2 4.4 2.9 2.9 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.8 2.7 2.7 2.7 3.1 2.8 2.8 2.9 2.9
ATMAPQ >= 10 5.0 4.1 6.0 4.8 4.6 4.5 4.5 4.4 4.2 4.2 4.4 4.5 4.4 4.4 4.3 4.4 4.3 4.3 4.2 4.2 4.1 4.1 4.1 4.4 4.3 4.3 4.2 4.2 4.2 4.1 4.1 4.1 4.1 4.2 4.1 4.1 4.1 4.1 4.1 4.2 4.1 4.3 4.2 4.2 4.2 4.2 4.3 4.1 4.2 4.3 4.2 4.2 3.7 5.1 4.3 4.3 4.3 4.3 4.2 4.2 4.0 4.0 4.2 4.2 4.2 4.2 4.0 4.0 4.0 4.0 4.0 4.0 4.2 4.3
ATMAPQ >= 3 5.4 4.3 6.6 5.3 5.0 4.9 4.8 4.8 4.6 4.6 4.6 4.7 4.6 4.6 4.6 4.8 4.4 4.5 4.2 4.1 4.2 4.1 4.3 4.6 4.5 4.4 4.3 4.2 4.1 4.1 4.3 4.3 4.6 4.5 4.5 4.5 4.3 4.7 4.6 4.6 4.6 4.7 4.6 4.3 4.2 4.3 4.1 4.2 4.3 4.4 4.4 4.2 3.6 5.2 4.4 4.6 4.5 4.7 4.4 4.3 4.3 4.3 4.4 4.7 4.6 4.6 4.3 4.5 4.3 4.3 4.5 4.5 4.6 4.7
ATMAPQ < 3 4.1 3.3 5.6 3.8 3.7 3.6 3.7 3.6 3.4 3.5 3.5 3.5 3.5 3.5 3.4 3.6 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.5 3.4 3.4 3.4 3.4 3.4 3.3 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.3 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.3 3.3 3.3 3.3 3.3 2.9 4.8 3.4 3.4 3.3 3.4 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.2 3.3 3.3 3.3 3.3 3.3
ATUnmapped 4.4 29.2 3.3 3.8 3.7 3.7 3.7 3.7 3.5 3.5 3.6 3.5 3.5 3.6 3.4 3.6 3.5 3.4 3.4 3.3 3.3 3.5 3.4 3.5 33.5 3.4 3.3 3.3 3.3 3.2 3.3 3.3 3.4 3.4 3.3 3.4 33.2 3.4 3.2 3.3 3.2 3.4 33.1 3.3 3.3 3.2 3.2 3.3 3.4 33.2 3.3 3.3 2.7 2.7 3.2 3.3 3.4 3.3 3.2 3.2 3.2 3.2 3.4 3.3 3.3 3.3 3.4 3.4 3.3 3.5 3.4 4.0 4.4 4.5
CAMAPQ >= 30 7.0 6.9 5.4 6.2 5.8 6.1 5.9 6.1 6.2 6.2 6.1 6.2 6.1 6.1 6.2 6.0 6.1 6.1 6.1 6.1 6.2 6.2 6.1 6.2 6.1 6.1 6.1 6.1 6.1 6.2 6.2 6.2 6.2 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.1 6.1 6.2 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.2 7.5 5.3 6.2 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1
CAMAPQ >= 20 6.7 7.7 4.7 6.1 5.7 6.1 5.8 6.1 6.1 6.2 6.0 6.1 6.0 6.0 6.7 5.7 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 5.9 5.9 5.9 5.9 6.0 6.0 6.0 6.0 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 8.4 4.4 5.9 5.8 5.7 5.8 5.7 5.8 5.7 5.8 5.7 5.7 5.7 5.7 5.7 5.7 6.2 5.5 5.8 5.7 5.7 5.7
CAMAPQ >= 10 7.6 6.9 6.1 6.8 6.5 6.8 6.5 7.0 7.1 7.2 7.0 6.9 7.1 7.0 7.1 7.1 7.0 7.1 7.1 7.2 7.1 7.1 7.0 7.2 6.9 7.0 7.1 7.3 7.2 7.3 7.4 7.3 7.1 7.0 7.3 7.2 7.1 7.3 7.0 7.0 7.0 7.0 7.2 6.9 7.1 7.2 7.2 7.2 7.1 7.0 7.1 7.1 8.3 6.2 7.2 7.3 7.1 7.1 7.2 7.2 7.2 7.3 7.2 7.2 7.1 7.1 7.2 7.3 7.1 7.1 7.3 7.2 7.3 7.1
CAMAPQ >= 3 7.7 6.8 6.3 7.2 7.1 7.1 6.9 7.6 7.5 7.4 7.4 7.3 7.3 7.1 6.9 6.7 7.0 7.0 6.8 7.1 7.2 7.1 7.0 7.2 6.8 6.9 7.1 7.2 7.6 7.5 7.9 7.4 7.2 7.4 7.5 7.3 7.8 7.4 7.1 7.3 6.8 7.0 7.1 6.8 7.1 7.2 7.0 7.1 6.9 6.8 6.8 6.9 8.1 5.8 6.9 7.0 7.0 6.8 7.0 7.3 7.0 7.2 7.0 7.0 7.0 7.1 7.2 7.3 7.1 7.3 7.3 7.1 7.3 7.1
CAMAPQ < 3 7.3 7.7 5.7 6.6 6.2 6.5 6.2 6.5 6.6 6.7 6.5 6.5 6.5 6.5 6.6 6.5 6.5 6.6 6.5 6.6 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.6 6.5 6.6 6.7 6.6 6.6 6.6 6.5 6.6 6.6 6.6 6.5 6.5 6.5 6.5 6.6 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 8.6 5.6 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.4 6.5 6.5 6.5 6.4
CAUnmapped 5.0 3.3 3.6 4.4 4.2 4.4 4.1 4.3 4.5 4.4 4.2 4.3 4.2 4.3 4.4 4.3 34.5 4.2 4.4 34.5 4.3 4.2 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.0 4.1 4.1 4.2 34.0 4.2 4.0 4.0 4.0 4.0 4.1 4.0 4.0 4.0 4.2 4.0 4.0 4.0 3.3 3.3 4.0 4.0 4.0 3.9 4.0 4.0 4.0 3.9 4.0 4.0 4.0 4.0 4.3 4.0 4.2 4.1 4.2 4.1 4.7 5.3
CCMAPQ >= 30 9.8 8.1 8.2 9.1 10.0 10.3 10.4 10.7 10.4 10.3 10.5 10.6 10.6 10.7 10.6 10.6 10.8 10.8 10.8 10.9 10.9 10.9 10.8 10.8 10.7 10.7 10.8 10.8 10.8 10.9 10.9 10.9 10.9 10.8 10.8 10.8 10.8 10.8 10.9 10.9 10.9 10.9 10.9 10.9 10.9 10.8 10.8 10.8 10.8 10.9 10.9 10.9 9.4 9.3 10.9 10.9 10.9 10.9 10.9 11.0 11.0 11.0 11.1 11.0 11.0 11.0 10.9 11.0 10.9 11.0 11.1 11.1 11.1 11.1
CCMAPQ >= 20 9.4 6.8 6.8 8.8 9.7 10.1 10.2 10.5 10.2 10.0 10.2 10.3 10.2 10.4 9.8 9.8 10.5 10.5 10.5 10.5 10.5 10.5 10.5 10.4 10.3 10.3 10.4 10.4 10.5 10.5 10.5 10.5 10.5 10.5 10.5 10.5 10.5 10.5 10.6 10.7 10.8 10.8 10.6 10.6 10.7 10.6 10.6 10.6 10.6 10.6 10.7 10.7 8.0 8.0 10.8 10.8 10.9 10.9 11.1 11.2 11.3 11.5 11.6 11.7 11.8 11.8 12.0 12.1 11.7 11.8 12.4 12.5 12.6 12.5
CCMAPQ >= 10 7.4 6.2 6.2 6.7 7.4 8.0 8.1 8.3 8.2 8.1 8.3 8.3 8.0 8.5 8.3 8.3 8.7 8.9 9.0 8.9 8.8 9.0 8.8 8.5 8.6 8.7 8.9 9.0 9.0 9.0 8.9 8.8 8.9 9.1 9.0 8.9 9.1 8.9 9.0 9.2 9.2 9.2 9.2 9.3 9.3 9.4 9.2 9.0 9.3 9.3 9.3 9.1 7.9 7.7 9.1 9.0 8.9 8.8 9.1 9.4 9.2 9.3 9.3 9.5 9.5 9.4 9.5 9.5 9.4 9.5 9.3 9.5 9.5 9.9
CCMAPQ >= 3 6.5 5.6 5.6 6.1 6.7 7.4 7.5 7.7 7.4 7.5 7.6 7.5 7.3 7.8 7.3 7.8 8.1 8.3 8.4 8.2 8.2 8.2 8.4 7.8 8.0 8.3 8.4 8.6 8.5 8.4 8.1 8.2 8.3 8.4 8.5 8.3 8.2 8.3 8.6 8.4 8.6 9.2 9.0 9.5 9.5 9.4 9.4 9.3 9.2 9.3 9.2 9.1 7.5 7.0 8.4 8.2 8.3 8.4 8.5 8.4 8.1 8.4 8.3 8.4 8.5 8.4 8.6 8.5 8.6 8.7 8.6 8.9 9.4 9.6
CCMAPQ < 3 9.2 7.6 7.8 8.6 9.4 9.8 9.9 10.2 10.0 9.8 9.9 10.0 10.0 10.1 10.0 10.0 10.2 10.3 10.3 10.2 10.3 10.3 10.2 10.2 10.2 10.2 10.2 10.2 10.3 10.4 10.3 10.3 10.3 10.3 10.3 10.3 10.2 10.2 10.3 10.3 10.4 10.5 10.4 10.4 10.4 10.4 10.4 10.4 10.4 10.5 10.5 10.4 8.9 8.9 10.4 10.4 10.3 10.3 10.4 10.5 10.5 10.6 10.6 10.6 10.5 10.5 10.5 10.5 10.4 10.5 10.6 10.7 10.7 10.7
CCUnmapped 5.2 4.1 4.2 4.8 5.3 5.4 5.5 5.7 5.5 5.4 5.5 5.5 5.5 5.6 5.4 5.5 5.7 5.6 5.7 5.7 5.7 5.7 5.7 5.7 5.7 5.7 5.9 35.9 6.0 6.0 6.0 6.0 6.3 36.1 6.3 6.2 6.2 6.4 6.5 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.7 6.8 6.7 6.8 6.8 7.1 31.2 5.9 7.0 7.4 7.2 7.2 7.3 7.4 7.3 7.5 7.5 7.5 7.5 7.5 7.5 7.6 7.4 7.4 7.6 7.6 7.9 7.9
CGMAPQ >= 30 6.1 4.0 4.9 6.1 5.6 6.7 5.9 6.7 6.7 6.5 6.5 6.6 6.6 6.6 6.7 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 5.7 5.7 6.6 6.6 6.7 6.6 6.6 6.7 6.7 6.7 6.7 6.6 6.6 6.6 6.6 6.6 6.7 6.6 6.7 6.7 6.7 6.7
CGMAPQ >= 20 6.4 3.7 4.5 6.5 6.1 7.3 6.4 7.3 7.3 7.2 7.1 7.2 7.2 7.2 7.5 7.0 7.2 7.2 7.2 7.3 7.2 7.3 7.3 7.3 7.2 7.2 7.3 7.2 7.2 7.3 7.3 7.3 7.3 7.2 7.3 7.2 7.2 7.2 7.3 7.3 7.2 7.2 7.3 7.3 7.2 7.3 7.2 7.3 7.2 7.3 7.3 7.3 5.4 5.4 7.3 7.3 7.3 7.2 7.2 7.3 7.1 7.2 7.2 7.1 7.0 7.0 6.9 6.9 7.2 6.8 6.8 6.8 6.8 6.9
CGMAPQ >= 10 3.9 2.7 3.2 4.1 3.9 4.4 4.1 4.7 4.5 4.3 4.3 4.5 4.4 4.4 4.5 4.7 4.4 4.3 4.4 4.5 4.5 4.7 4.6 4.6 4.4 4.5 4.5 4.5 4.5 4.7 4.5 4.7 4.7 4.5 4.7 4.7 4.7 4.8 4.7 4.9 4.6 4.6 4.8 4.8 4.8 4.8 4.7 4.7 4.6 4.7 4.7 4.7 4.0 4.1 4.6 4.6 4.5 4.6 4.6 4.5 4.6 4.6 4.6 4.6 4.5 4.4 4.5 4.5 4.5 4.6 4.5 4.4 4.4 4.4
CGMAPQ >= 3 3.4 2.3 2.8 3.5 3.5 3.8 3.6 4.2 3.7 3.4 3.5 3.8 3.9 3.8 4.1 4.0 3.7 3.7 3.8 4.1 3.9 4.3 4.2 4.0 3.7 4.0 3.8 3.8 4.1 4.0 3.9 4.0 4.1 3.8 4.1 4.1 3.9 4.1 4.1 4.3 3.9 4.0 4.3 4.0 4.2 4.2 4.1 4.2 4.1 4.2 4.1 4.1 3.8 3.6 4.0 4.1 3.9 4.1 4.0 4.2 4.2 3.9 3.9 3.9 3.9 3.7 4.0 4.0 3.9 4.2 3.9 3.9 3.9 4.1
CGMAPQ < 3 5.4 3.6 4.3 5.5 5.1 5.9 5.3 6.0 6.0 5.9 5.8 5.9 5.9 5.9 5.9 5.9 5.8 5.9 5.8 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 6.0 6.0 6.0 5.9 6.0 6.0 6.0 6.0 6.0 6.0 5.1 5.1 6.0 6.0 5.9 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0
CGUnmapped 4.1 2.6 3.2 34.3 3.8 4.6 4.0 4.5 4.6 4.4 4.4 34.8 4.5 4.5 4.6 4.4 4.5 4.7 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.7 4.8 34.8 4.7 4.6 4.7 4.6 4.7 34.6 4.7 4.5 4.5 4.6 4.7 34.3 4.6 4.5 4.5 4.6 4.7 34.4 4.6 4.6 4.5 4.6 4.5 3.9 29.1 4.6 4.4 4.5 4.4 4.4 4.5 4.5 4.4 4.5 4.3 4.4 4.4 4.4 4.3 4.5 4.3 4.4 4.4 4.5 4.7
CTMAPQ >= 30 7.5 6.1 6.1 7.1 6.7 7.2 7.1 7.2 7.1 7.1 7.1 7.2 7.1 7.1 7.1 7.0 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.2 6.1 6.1 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1
CTMAPQ >= 20 7.2 5.1 5.1 6.9 6.5 7.0 6.9 7.1 6.8 6.8 6.9 7.0 7.0 6.9 6.5 6.6 6.9 7.0 7.0 7.0 7.1 7.1 7.0 6.9 6.9 6.9 6.9 6.9 6.8 6.9 6.9 6.8 6.9 6.9 6.9 6.8 6.8 6.7 6.7 6.7 6.8 6.8 6.9 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 5.0 4.9 6.7 6.6 6.6 6.7 6.5 6.6 6.6 6.5 6.5 6.5 6.4 6.4 6.4 6.3 6.0 6.0 6.2 6.2 6.3 6.2
CTMAPQ >= 10 7.5 6.1 6.3 7.1 6.8 7.2 7.3 7.4 7.1 7.2 7.1 7.7 7.6 7.4 7.6 7.5 7.4 7.6 7.7 7.4 7.7 7.7 7.4 7.4 7.3 7.3 7.4 7.3 7.2 7.3 7.4 7.3 7.5 7.4 7.4 7.4 7.5 7.4 7.4 7.5 7.5 7.7 7.6 7.7 7.5 7.5 7.7 7.5 7.4 7.9 7.7 7.7 6.7 6.4 7.4 7.5 7.7 7.7 7.5 7.7 7.7 7.8 7.5 7.5 7.6 7.6 7.5 7.5 7.6 7.2 7.3 7.3 7.2 7.1
CTMAPQ >= 3 7.6 6.2 6.5 7.2 7.1 7.3 7.1 7.3 7.1 7.4 7.7 8.1 7.7 7.6 7.9 7.6 7.6 7.8 8.1 8.0 8.1 7.9 7.6 7.7 7.8 7.6 7.6 7.6 7.2 7.4 7.1 7.1 7.4 6.9 7.4 7.3 7.4 7.5 7.5 7.9 7.7 8.0 8.0 8.0 7.8 7.8 7.6 7.5 7.6 7.9 8.2 8.1 6.9 6.4 7.6 7.6 7.9 8.0 8.1 7.9 7.9 7.7 7.8 7.5 7.8 7.5 7.4 7.7 7.3 7.0 7.2 6.6 6.8 7.2
CTMAPQ < 3 7.5 6.1 6.2 7.2 6.8 7.2 7.2 7.3 7.2 7.2 7.2 7.3 7.3 7.2 7.2 7.2 7.2 7.3 7.3 7.3 7.4 7.4 7.3 7.3 7.3 7.2 7.2 7.2 7.2 7.2 7.3 7.2 7.3 7.3 7.3 7.2 7.2 7.2 7.2 7.2 7.2 7.3 7.3 7.3 7.3 7.2 7.2 7.2 7.2 7.3 7.3 7.3 6.2 6.2 7.3 7.2 7.3 7.3 7.2 7.3 7.3 7.3 7.3 7.3 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1
CTUnmapped 4.6 3.5 3.5 4.3 4.1 4.4 4.3 4.3 4.3 4.2 4.2 4.2 4.2 4.2 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.0 4.0 4.0 4.0 4.0 3.9 3.9 4.0 3.9 3.9 3.9 3.9 3.9 3.9 3.8 3.8 3.8 3.8 3.8 3.9 4.0 33.7 3.9 3.8 3.7 3.8 3.8 3.7 3.7 3.0 3.0 3.7 3.9 33.6 3.8 3.8 33.5 3.7 3.8 33.4 3.8 3.6 3.5 3.6 3.5 3.5 3.5 3.5 3.6 3.7 3.8
GAMAPQ >= 30 6.6 7.8 5.5 6.4 6.3 6.1 6.1 5.7 6.0 6.1 6.0 6.0 6.0 5.9 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.1 6.1 6.0 6.0 6.0 7.4 5.2 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0
GAMAPQ >= 20 6.6 9.1 4.7 6.3 6.2 6.1 6.0 5.6 5.9 6.0 5.9 5.9 5.9 5.9 6.6 5.9 5.9 5.9 5.9 5.8 5.8 5.9 5.9 6.0 6.0 5.9 6.0 6.0 6.0 5.9 6.0 5.9 6.0 5.9 5.9 6.0 5.9 5.9 5.8 5.9 5.9 5.9 5.9 5.9 5.9 6.0 5.9 5.9 6.0 5.9 5.8 5.9 8.7 4.3 5.9 5.8 5.8 5.8 5.7 5.6 5.7 5.6 5.6 5.6 5.6 5.6 5.6 5.5 6.2 5.7 5.7 5.7 5.8 5.7
GAMAPQ >= 10 6.8 7.8 5.4 6.4 6.3 6.5 6.3 5.9 6.2 6.3 6.2 6.1 5.9 6.1 6.1 6.0 6.1 6.0 5.9 5.9 5.9 6.3 6.4 6.4 6.4 6.3 6.4 6.2 6.4 6.1 6.3 6.4 6.2 6.2 6.3 6.3 6.1 6.3 6.2 6.4 6.4 6.1 6.2 6.1 6.4 6.4 6.2 6.5 6.5 6.4 6.2 6.2 7.3 5.6 6.6 6.6 6.6 6.4 6.5 6.4 6.3 6.3 6.4 6.3 6.3 6.2 6.3 6.2 6.1 6.3 6.4 6.4 6.5 6.3
GAMAPQ >= 3 6.2 7.3 4.9 5.6 5.6 6.1 6.4 5.7 5.9 6.1 6.1 5.9 5.8 6.0 6.1 6.3 6.3 6.2 6.3 6.3 6.3 6.4 6.8 6.6 6.7 6.6 6.5 6.6 6.6 6.4 6.8 6.9 6.4 6.6 6.7 6.5 6.3 6.4 6.4 6.8 6.5 6.0 6.0 6.3 6.4 6.6 6.6 6.9 6.8 6.5 6.4 6.4 7.4 5.8 7.1 6.7 6.8 6.5 6.5 6.5 6.7 6.6 6.8 6.3 6.4 6.2 6.4 6.3 6.5 6.7 6.7 6.8 6.7 6.4
GAMAPQ < 3 6.8 8.6 5.4 6.3 6.3 6.2 6.2 5.7 6.0 6.2 6.1 6.1 6.0 6.1 6.2 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.2 6.2 6.2 6.2 6.2 6.1 6.1 6.2 6.1 6.2 6.2 6.2 6.2 6.2 6.2 6.3 6.3 6.2 6.2 6.2 6.2 6.3 6.2 6.3 6.3 6.2 6.2 6.2 8.2 5.3 6.3 6.3 6.3 6.2 6.3 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.1
GAUnmapped 35.3 3.7 3.5 4.4 4.3 34.8 4.3 3.9 34.5 4.3 4.2 4.3 4.2 4.2 4.3 4.3 4.2 4.1 4.3 4.2 4.3 4.3 34.3 4.2 4.2 4.3 4.2 4.2 4.4 34.3 4.5 34.2 4.2 4.1 4.3 34.2 4.2 4.0 4.1 4.1 4.2 33.9 4.2 4.0 4.0 4.1 4.0 4.0 4.1 4.1 4.1 4.2 3.3 3.3 4.2 4.1 4.1 4.1 4.0 4.1 4.2 4.2 4.1 4.2 4.3 32.8 4.8 4.3 4.4 4.4 4.4 4.4 4.8 5.3
GCMAPQ >= 30 8.5 7.3 7.1 8.5 9.2 8.6 9.3 9.0 9.1 9.3 9.3 9.3 9.3 9.2 9.2 9.3 9.3 9.3 9.4 9.4 9.3 9.3 9.3 9.2 9.2 9.3 9.3 9.4 9.4 9.4 9.4 9.3 9.3 9.3 9.3 9.3 9.3 9.3 9.4 9.4 9.4 9.4 9.3 9.3 9.3 9.3 9.3 9.4 9.4 9.4 9.4 9.4 8.0 8.0 9.3 9.3 9.3 9.3 9.4 9.4 9.4 9.4 9.4 9.3 9.3 9.3 9.3 9.3 9.3 9.4 9.4 9.4 9.4 9.3
GCMAPQ >= 20 8.8 6.6 6.5 9.0 9.9 9.0 10.0 9.6 9.7 9.9 10.0 9.9 10.0 9.9 9.5 9.9 10.0 10.0 10.1 10.1 10.1 10.1 10.0 10.0 10.0 10.0 10.0 10.0 10.1 10.1 10.1 10.0 9.9 10.0 9.9 9.9 9.9 10.0 10.0 10.0 9.9 10.0 10.0 10.0 10.0 9.9 10.0 10.0 10.1 10.1 10.1 10.1 7.3 7.3 10.0 9.9 9.9 9.9 9.9 9.9 9.9 9.9 9.7 9.6 9.5 9.5 9.5 9.4 9.1 9.5 9.3 9.2 9.3 9.2
GCMAPQ >= 10 7.3 6.1 5.8 6.9 7.5 7.1 7.7 7.3 7.4 7.6 7.6 7.6 7.7 7.6 7.7 7.7 7.8 7.9 7.8 8.0 8.1 7.8 7.8 7.8 7.7 8.0 7.9 7.9 8.0 8.1 8.3 8.3 8.0 8.1 7.9 8.1 8.1 8.1 8.3 8.1 8.2 8.2 8.1 8.2 8.1 8.2 8.0 8.1 8.0 7.9 8.0 8.1 6.7 6.7 8.0 7.8 7.8 7.8 7.9 8.0 8.1 7.9 8.1 7.7 7.8 7.8 8.0 8.0 7.8 8.0 8.1 7.9 7.8 7.7
GCMAPQ >= 3 7.1 6.0 5.8 6.7 6.9 6.6 7.4 6.9 6.8 7.1 6.9 7.0 6.9 7.1 6.7 7.0 6.9 7.0 7.1 7.2 7.2 7.4 7.2 7.1 7.0 6.9 6.8 6.8 6.9 7.1 7.3 7.3 7.2 7.5 7.3 7.3 7.4 7.5 7.5 7.4 7.4 7.5 7.1 7.3 7.2 7.3 6.8 7.0 7.1 7.3 7.4 7.4 5.8 6.2 7.6 7.3 7.3 7.1 7.2 7.4 7.3 7.4 7.3 7.2 7.1 7.4 7.8 7.8 7.9 7.8 7.7 7.7 7.6 7.4
GCMAPQ < 3 8.2 7.0 6.8 8.1 8.7 8.2 8.9 8.5 8.6 8.8 8.8 8.7 8.8 8.7 8.7 8.7 8.8 8.8 8.8 8.9 8.9 8.8 8.8 8.7 8.7 8.7 8.8 8.8 8.9 8.9 8.9 8.8 8.8 8.8 8.7 8.8 8.8 8.8 8.9 8.9 8.8 8.9 8.8 8.8 8.8 8.8 8.8 8.8 8.9 8.9 8.9 8.9 7.5 7.5 8.8 8.8 8.8 8.8 8.9 9.0 9.0 9.0 8.9 8.9 8.8 8.9 8.9 8.9 9.0 9.0 9.0 9.0 8.9 9.0
GCUnmapped 5.1 4.1 4.1 5.1 5.6 5.2 5.7 5.6 5.6 5.7 36.0 5.6 5.6 5.7 5.5 6.0 5.7 5.9 36.1 5.8 5.8 5.7 5.7 5.7 5.7 5.9 35.9 5.8 5.8 5.7 5.8 5.7 5.7 5.7 5.6 5.6 5.6 5.6 5.7 5.5 5.5 5.6 5.6 5.5 5.5 5.5 5.5 5.6 5.6 5.6 5.8 35.5 4.5 4.4 5.7 5.6 5.3 5.3 5.4 5.3 5.5 35.0 5.3 5.2 5.1 5.5 5.2 5.1 5.1 5.1 5.1 5.2 5.2 5.3
GGMAPQ >= 30 11.8 9.5 9.2 10.3 10.4 10.5 10.4 10.0 10.4 10.4 10.3 10.3 10.4 10.4 10.5 10.6 10.7 10.7 10.8 10.7 10.7 10.6 10.6 10.7 10.7 10.7 10.8 10.8 10.8 10.8 10.8 10.7 10.7 10.8 10.8 10.8 10.8 10.9 10.9 10.9 10.9 10.9 10.8 10.8 10.8 10.8 10.9 10.9 10.9 10.9 10.9 10.8 9.3 9.3 10.9 10.9 10.9 10.9 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.1 11.1 11.2 11.2 11.2 11.2 11.2 11.2
GGMAPQ >= 20 12.3 8.6 8.2 10.9 10.9 11.1 11.0 10.6 11.1 11.3 11.1 11.0 11.0 11.1 11.1 11.2 11.5 11.6 11.6 11.6 11.7 11.6 11.7 11.9 12.0 12.0 12.0 12.1 12.2 12.3 12.4 12.4 12.4 12.6 12.6 12.7 12.9 12.9 13.0 13.2 13.3 13.2 12.8 12.8 12.9 13.0 13.1 13.1 13.0 13.1 13.2 13.3 9.8 9.9 13.5 13.5 13.7 13.8 13.9 14.1 14.2 14.2 14.2 14.4 14.6 14.7 14.6 14.7 14.5 14.6 14.7 14.7 14.6 14.3
GGMAPQ >= 10 10.0 7.8 7.8 8.5 9.0 9.2 8.6 8.3 9.2 9.3 8.9 8.5 8.5 8.7 8.8 8.7 8.8 8.8 9.1 9.1 9.1 8.9 9.0 9.3 9.3 9.3 9.1 9.3 9.5 9.6 9.8 9.3 9.3 9.5 9.2 9.2 9.3 9.2 9.3 9.4 9.4 9.0 8.8 8.9 9.0 8.8 9.0 9.0 8.9 8.9 9.1 8.9 7.7 7.7 9.1 8.8 8.8 8.8 8.8 8.8 8.8 8.6 8.4 8.5 8.6 8.7 8.6 8.5 8.8 8.9 8.7 8.9 8.9 8.8
GGMAPQ >= 3 10.0 7.5 7.3 7.7 8.2 8.8 7.9 7.5 8.4 8.3 7.8 7.2 7.7 7.9 8.1 8.2 8.2 8.5 8.9 8.6 8.7 8.5 8.7 9.2 9.2 9.3 9.0 9.2 9.4 9.5 9.6 9.2 9.4 9.2 8.7 8.5 8.8 8.7 8.7 8.6 8.5 8.2 8.2 8.2 8.5 8.3 8.6 8.5 8.4 8.5 8.5 8.1 7.1 7.6 8.6 8.4 8.3 8.1 8.6 8.2 8.2 8.1 7.9 7.9 8.3 8.1 7.7 7.9 8.0 8.3 8.2 8.2 8.2 8.0
GGMAPQ < 3 11.4 9.0 8.7 9.8 10.0 10.1 9.8 9.4 10.0 10.1 9.9 9.8 9.9 10.0 10.1 10.1 10.2 10.3 10.4 10.3 10.2 10.2 10.2 10.4 10.4 10.4 10.4 10.4 10.5 10.5 10.5 10.3 10.3 10.4 10.3 10.4 10.5 10.5 10.5 10.5 10.5 10.4 10.3 10.2 10.3 10.3 10.4 10.4 10.4 10.4 10.4 10.3 8.8 8.8 10.4 10.3 10.4 10.4 10.4 10.4 10.4 10.3 10.3 10.4 10.5 10.5 10.5 10.5 10.6 10.6 10.6 10.6 10.7 10.6
GGUnmapped 6.7 5.1 4.8 5.9 36.3 6.0 6.0 5.7 6.1 6.2 6.2 6.2 36.5 6.3 6.4 6.4 6.4 6.6 6.7 6.8 7.0 37.1 7.0 7.2 7.3 7.2 7.3 7.4 7.5 7.7 7.7 7.7 7.9 7.9 8.0 8.1 8.2 8.2 8.3 8.5 8.5 8.6 8.3 8.3 8.4 8.4 8.4 8.6 8.4 8.5 8.5 8.5 6.9 7.1 9.0 8.7 8.8 8.9 8.9 9.0 9.1 9.0 9.0 9.0 9.1 9.5 9.0 9.0 8.9 9.0 9.0 9.0 9.1 9.2
GTMAPQ >= 30 5.3 3.9 3.8 4.8 4.7 4.6 4.8 4.6 4.5 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 3.8 3.8 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4
GTMAPQ >= 20 5.4 3.5 3.3 4.8 4.6 4.6 4.8 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.3 4.6 4.5 4.5 4.5 4.5 4.5 4.4 4.4 4.4 4.5 4.5 4.5 4.5 4.4 4.5 4.4 4.4 4.4 4.4 4.4 4.3 4.3 4.4 4.3 4.3 4.3 4.3 4.4 4.2 4.2 4.2 4.2 4.2 4.3 4.2 4.2 4.2 3.1 3.1 4.2 4.1 4.1 4.1 4.1 4.1 4.0 4.0 4.0 4.0 3.9 4.0 4.0 4.0 3.9 4.1 4.0 4.0 4.0 4.0
GTMAPQ >= 10 6.1 4.5 4.3 5.4 5.2 5.2 5.5 5.4 5.3 5.4 5.3 5.4 5.0 5.2 5.1 5.2 5.3 5.2 5.1 5.2 5.2 5.1 4.9 5.1 5.1 5.0 5.0 4.9 4.9 4.8 4.8 4.9 4.9 5.0 4.9 4.8 4.8 4.9 4.8 4.7 4.9 4.9 4.9 4.8 4.8 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.0 4.0 4.7 4.6 4.6 4.6 4.5 4.5 4.5 4.6 4.5 4.7 4.5 4.5 4.5 4.7 4.6 4.7 4.6 4.5 4.7 4.6
GTMAPQ >= 3 6.6 5.0 4.5 6.0 5.4 5.3 5.7 5.7 5.7 5.6 5.5 5.7 5.3 5.5 5.3 5.6 5.4 5.3 5.2 5.3 5.0 4.9 5.2 5.0 5.3 5.2 5.4 5.2 5.2 5.3 5.1 5.3 5.3 5.4 5.2 5.2 4.9 5.1 5.0 5.1 5.1 5.3 5.4 5.3 4.9 5.1 4.9 5.1 5.2 5.2 4.8 5.0 4.4 4.3 4.9 4.9 4.9 4.8 4.5 4.8 4.6 5.0 4.9 5.0 4.8 5.1 5.0 4.8 4.9 4.9 4.9 4.7 4.9 4.8
GTMAPQ < 3 5.6 4.1 3.9 4.9 4.9 4.7 5.0 4.8 4.7 4.8 4.7 4.7 4.6 4.7 4.6 4.7 4.6 4.7 4.7 4.8 4.7 4.7 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 3.9 3.9 4.6 4.6 4.5 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5
GTUnmapped 4.3 2.8 2.8 3.6 3.4 3.4 3.5 3.4 3.3 3.4 3.5 3.4 3.5 33.7 3.4 3.5 3.4 3.3 3.4 3.3 3.3 3.3 3.3 3.3 3.4 3.3 3.3 3.3 3.3 3.3 3.3 3.2 3.2 3.3 3.2 3.2 3.3 3.2 3.2 3.2 3.2 3.2 3.3 3.2 3.2 3.2 3.4 32.9 3.3 3.2 3.1 3.2 2.6 2.8 32.6 3.1 3.1 3.1 3.0 3.1 3.1 3.1 3.1 3.1 3.0 3.4 3.0 3.1 3.0 3.1 3.0 3.0 3.1 3.2
TAMAPQ >= 30 2.5 4.0 2.4 3.0 2.9 2.7 2.7 2.7 2.7 2.7 2.6 2.6 2.6 2.6 2.7 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 3.5 2.1 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.4 2.5 2.5
TAMAPQ >= 20 2.4 4.6 2.0 2.7 2.6 2.5 2.4 2.4 2.4 2.4 2.4 2.3 2.4 2.4 3.0 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.1 2.1 2.2 2.1 2.2 2.1 2.1 2.1 2.1 2.1 2.1 3.9 1.6 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.6 2.1 2.1 2.1 2.1 2.1
TAMAPQ >= 10 3.3 4.8 3.1 3.8 3.6 3.4 3.3 3.3 3.2 3.2 3.3 3.1 3.3 3.2 3.4 3.3 3.1 3.2 3.2 3.1 3.0 3.2 3.1 3.0 3.1 3.1 2.9 2.9 2.9 2.8 2.9 2.9 2.7 2.9 2.8 2.8 2.7 2.7 2.8 2.9 2.8 2.7 2.7 2.8 2.8 2.8 2.7 2.9 2.9 2.8 3.1 2.9 4.0 2.4 2.8 2.7 2.8 2.8 2.9 3.0 3.0 2.9 2.9 2.8 3.0 3.0 3.0 3.0 3.0 3.1 3.0 2.9 2.8 2.9
TAMAPQ >= 3 3.6 5.3 3.4 4.4 4.2 3.9 3.7 3.9 3.7 3.7 3.8 3.7 3.9 4.1 3.8 4.0 3.6 3.6 3.5 3.5 3.4 3.5 3.5 3.4 3.3 3.5 3.0 3.1 3.1 3.0 3.2 3.1 3.1 3.1 3.0 3.0 2.9 2.8 3.0 3.1 3.1 2.9 3.0 3.2 3.2 3.0 3.0 3.1 3.0 3.1 3.3 3.3 4.5 2.7 3.0 3.0 3.3 3.4 3.6 3.6 3.6 3.4 3.5 3.5 3.6 3.4 3.6 3.6 3.5 3.6 3.5 3.5 3.2 3.3
TAMAPQ < 3 2.5 4.6 2.4 3.0 2.9 2.7 2.6 2.6 2.7 2.6 2.6 2.6 2.6 2.6 2.7 2.7 2.6 2.6 2.5 2.5 2.5 2.6 2.6 2.5 2.5 2.5 2.5 2.5 2.5 2.4 2.5 2.5 2.5 2.5 2.4 2.4 2.4 2.4 2.4 2.5 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.5 2.5 4.1 2.1 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.5 2.4 2.4 2.4 2.4 2.5 2.5 2.4 2.4 2.4 2.4
TAUnmapped 2.4 2.6 2.6 3.2 3.0 2.9 2.8 2.8 2.9 2.8 2.8 2.8 2.8 2.8 2.9 2.7 2.7 2.7 2.7 2.7 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.5 2.6 2.6 2.6 2.6 2.5 2.5 2.6 2.5 2.5 2.5 2.5 2.5 2.6 2.5 2.6 2.5 2.7 32.3 2.6 2.5 2.5 2.1 2.1 2.5 2.5 2.4 2.5 2.5 2.4 2.5 2.4 2.4 2.5 2.5 2.6 2.8 2.5 2.6 2.5 2.5 2.5 2.8 3.2
TCMAPQ >= 30 3.9 5.1 5.1 5.9 6.3 5.9 6.2 6.3 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.1 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 5.2 5.2 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0
TCMAPQ >= 20 3.8 4.4 4.4 5.8 6.2 5.7 6.2 6.1 6.0 5.9 6.0 6.0 6.0 5.9 5.6 5.6 5.9 5.8 5.9 5.8 5.9 5.9 5.8 5.8 5.8 5.9 5.9 5.8 5.8 5.7 5.7 5.7 5.7 5.7 5.8 5.7 5.7 5.7 5.7 5.6 5.7 5.7 5.8 5.8 5.8 5.7 5.7 5.8 5.7 5.7 5.7 5.7 4.3 4.2 5.6 5.6 5.6 5.6 5.6 5.5 5.6 5.5 5.5 5.5 5.5 5.5 5.4 5.4 5.1 5.1 5.4 5.4 5.4 5.5
TCMAPQ >= 10 4.0 5.4 5.4 6.3 6.7 6.1 6.6 6.6 6.6 6.3 6.6 6.5 6.9 6.6 6.7 6.5 6.6 6.6 6.6 6.6 6.7 6.3 6.3 6.4 6.6 6.4 6.6 6.4 6.5 6.3 6.2 6.3 6.2 6.6 6.5 6.5 6.4 6.3 6.5 6.3 6.4 6.5 6.8 6.7 6.9 6.6 6.5 6.7 6.6 6.6 6.7 6.7 5.8 5.8 6.4 6.5 6.7 6.8 6.7 6.4 6.5 6.3 6.3 6.4 6.3 6.4 6.4 6.3 6.1 6.1 6.1 6.1 6.1 6.2
TCMAPQ >= 3 4.1 5.6 5.6 6.8 7.1 6.4 7.0 6.5 6.8 6.6 7.1 7.0 7.3 6.6 6.8 6.8 6.9 6.9 6.9 7.0 6.9 6.6 6.5 6.6 6.8 6.8 7.0 7.0 6.8 6.5 6.2 6.2 6.1 6.7 6.4 6.9 6.8 6.5 6.9 6.5 6.9 6.7 7.3 7.3 7.1 6.7 7.0 6.7 6.8 6.8 6.8 7.1 5.6 5.9 6.5 6.8 6.9 6.9 7.0 6.4 6.4 6.2 6.1 6.2 6.1 6.4 6.1 5.7 5.7 5.6 5.3 5.7 5.7 5.8
TCMAPQ < 3 4.0 5.3 5.3 6.1 6.5 6.1 6.5 6.6 6.4 6.2 6.4 6.4 6.4 6.3 6.2 6.3 6.3 6.3 6.3 6.4 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.2 6.3 6.2 6.3 6.3 6.3 6.3 6.2 6.2 6.2 6.2 6.3 6.4 6.4 6.3 6.3 6.3 6.3 6.2 6.3 6.2 6.3 5.4 5.4 6.2 6.3 6.3 6.3 6.3 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.1 6.1 6.0 6.1 6.0 6.1 6.1
TCUnmapped 2.4 3.4 29.1 4.0 4.3 3.9 4.2 4.2 4.1 4.0 4.0 4.0 4.0 4.0 4.1 33.7 4.0 3.9 3.8 3.9 3.8 3.8 3.9 3.8 3.8 3.8 3.8 3.8 3.8 3.7 3.7 3.8 3.7 3.7 3.8 3.8 3.9 33.7 3.8 3.7 3.7 3.7 3.9 33.7 4.0 33.6 3.8 3.7 3.7 3.7 3.7 3.7 3.1 3.0 3.8 33.1 3.7 3.9 33.6 3.6 3.7 3.7 3.6 3.7 3.7 3.7 3.6 3.7 3.6 3.6 3.7 3.7 3.8 4.0
TGMAPQ >= 30 4.6 5.2 5.3 6.4 6.3 6.1 5.9 6.3 6.3 6.1 6.0 6.1 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.0 5.2 5.2 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.0 6.0 6.0 6.0 6.0
TGMAPQ >= 20 4.8 4.7 4.8 6.6 6.5 6.3 6.2 6.5 6.5 6.2 6.2 6.2 6.3 6.3 6.2 6.0 6.4 6.3 6.3 6.3 6.2 6.3 6.3 6.3 6.2 6.2 6.3 6.3 6.2 6.3 6.2 6.2 6.2 6.1 6.2 6.2 6.1 6.2 6.1 6.1 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 5.9 4.5 4.5 5.9 6.0 5.9 5.9 5.9 5.8 5.8 5.7 5.7 5.7 5.7 5.6 5.6 5.6 5.7 5.4 5.5 5.5 5.5 5.5
TGMAPQ >= 10 5.6 6.0 6.1 7.6 7.5 7.3 7.0 7.8 7.6 7.0 7.0 7.0 7.4 7.3 7.0 7.3 7.4 7.3 7.4 7.3 7.1 7.5 7.3 7.2 7.2 7.1 7.3 7.2 7.1 7.3 7.0 7.1 7.2 7.1 7.2 7.1 7.2 7.4 7.3 7.3 7.2 7.1 7.3 7.3 7.1 7.1 7.2 7.2 6.9 6.9 7.0 6.9 6.1 6.2 7.0 7.2 7.0 7.0 7.1 7.0 6.8 7.0 7.0 7.0 7.0 7.1 6.9 6.8 7.2 7.0 7.0 6.9 6.8 6.8
TGMAPQ >= 3 5.8 6.1 6.1 7.5 7.4 7.6 6.9 7.7 7.4 7.0 6.8 7.1 7.4 7.2 7.2 7.4 7.4 7.3 6.9 7.2 7.0 7.4 7.0 7.1 7.2 7.1 7.3 7.4 7.4 7.4 7.3 7.0 7.4 7.4 7.2 7.3 7.3 7.4 7.6 7.5 7.6 7.5 7.7 7.6 7.5 7.2 7.2 7.2 7.1 7.0 7.1 7.1 6.2 6.4 7.1 7.1 6.9 6.9 6.9 7.0 7.1 7.3 7.3 7.4 7.4 7.5 7.6 7.7 7.9 7.3 7.4 7.3 7.0 7.1
TGMAPQ < 3 5.0 5.5 5.6 6.9 6.7 6.6 6.3 6.8 6.8 6.5 6.4 6.5 6.5 6.5 6.5 6.5 6.6 6.5 6.5 6.5 6.5 6.6 6.6 6.5 6.6 6.6 6.6 6.6 6.6 6.6 6.5 6.5 6.6 6.5 6.6 6.6 6.5 6.6 6.7 6.6 6.5 6.5 6.6 6.6 6.5 6.5 6.5 6.6 6.5 6.5 6.5 6.5 5.6 5.6 6.5 6.5 6.5 6.4 6.5 6.4 6.4 6.5 6.4 6.5 6.4 6.5 6.4 6.4 6.5 6.4 6.4 6.4 6.4 6.4
TGUnmapped 3.0 3.5 3.7 4.5 4.5 4.3 4.2 4.5 4.6 4.4 4.4 4.4 4.3 4.4 4.7 4.3 4.4 4.4 4.4 4.4 4.3 4.3 4.4 4.3 4.4 34.5 4.4 4.2 4.3 4.3 4.1 4.2 4.2 4.1 4.2 4.1 4.1 4.2 4.2 4.0 4.1 4.0 4.0 4.1 4.1 4.0 4.0 4.0 4.1 4.3 33.9 4.0 3.3 3.3 3.9 4.0 3.9 3.9 4.0 4.1 33.6 3.9 3.8 4.1 33.6 3.9 3.7 3.8 3.8 3.7 3.8 3.7 3.8 4.0
TTMAPQ >= 30 3.7 4.5 4.6 5.2 5.0 5.0 5.1 5.1 5.0 4.9 4.9 4.9 4.9 4.9 4.8 4.7 4.7 4.6 4.6 4.6 4.6 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.5 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 3.9 3.9 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.6
TTMAPQ >= 20 3.7 3.9 4.0 5.1 4.9 4.8 4.9 4.8 4.7 4.6 4.6 4.7 4.7 4.7 4.3 4.2 4.4 4.3 4.2 4.2 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.1 4.1 4.1 4.1 4.1 4.2 4.2 4.2 4.2 4.1 4.1 4.1 4.1 4.1 4.2 4.2 4.2 4.2 4.2 4.1 4.1 4.1 4.1 4.1 3.1 3.2 4.2 4.3 4.3 4.2 4.2 4.2 4.2 4.3 4.3 4.4 4.4 4.4 4.4 4.4 4.1 4.0 4.2 4.2 4.2 4.3
TTMAPQ >= 10 5.7 6.4 6.5 7.3 6.8 6.6 6.6 6.2 6.0 6.1 6.1 6.2 6.3 6.1 6.1 5.8 5.7 5.6 5.5 5.5 5.5 5.5 5.6 5.4 5.4 5.5 5.4 5.4 5.3 5.1 5.2 5.2 5.3 5.3 5.3 5.3 5.3 5.4 5.2 5.0 4.9 5.2 5.3 5.2 5.1 5.0 5.0 4.9 4.8 4.8 4.9 5.1 4.4 4.4 5.1 5.1 5.2 5.2 5.1 5.0 5.1 5.2 5.3 5.4 5.5 5.3 5.3 5.3 5.2 5.2 5.1 5.1 5.2 5.4
TTMAPQ >= 3 6.0 6.7 7.0 8.1 7.9 7.5 7.4 6.9 6.8 6.9 6.8 7.0 7.0 6.8 6.8 6.4 6.5 6.1 6.3 6.1 6.1 5.8 5.8 5.8 5.8 6.1 6.0 5.8 5.4 5.0 5.1 5.2 5.3 5.5 5.7 5.7 5.6 5.6 5.4 5.3 5.3 5.6 5.6 5.6 5.3 5.2 5.2 4.8 4.7 4.9 5.2 5.1 4.5 4.4 5.3 5.4 5.3 5.3 5.3 5.3 5.2 5.2 5.5 5.4 5.5 5.5 5.5 5.1 5.0 5.1 5.1 5.2 5.2 5.4
TTMAPQ < 3 4.1 4.9 5.0 5.6 5.5 5.4 5.5 5.4 5.3 5.2 5.2 5.2 5.3 5.2 5.1 5.0 5.0 4.8 4.8 4.8 4.9 4.9 4.9 4.9 4.8 4.9 4.8 4.7 4.7 4.6 4.6 4.7 4.7 4.7 4.8 4.8 4.7 4.7 4.6 4.6 4.6 4.6 4.7 4.7 4.7 4.7 4.7 4.6 4.5 4.5 4.6 4.5 3.9 3.9 4.6 4.7 4.7 4.6 4.6 4.5 4.6 4.6 4.7 4.6 4.7 4.7 4.7 4.6 4.6 4.5 4.6 4.6 4.6 4.6
TTUnmapped 2.8 3.8 3.9 4.7 4.5 4.5 4.7 4.7 4.6 4.5 4.6 4.7 4.7 4.7 34.5 4.6 4.6 4.5 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.5 4.5 4.4 4.3 4.3 4.3 4.3 4.3 4.4 4.4 4.4 4.4 4.4 4.3 4.3 4.3 4.4 4.4 4.4 4.4 4.5 4.4 4.3 4.3 4.2 4.2 4.2 3.5 3.4 4.2 4.2 4.4 34.1 4.3 4.1 4.2 4.1 4.3 34.0 4.3 4.1 4.1 4.1 4.0 4.0 4.0 4.0 4.2 4.3
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.

Error Distribution

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3

Nucleotide Composition MAPQ >= 30

A C G T N

Nucleotide Composition MAPQ >= 20

A C G T N

Nucleotide Composition MAPQ >= 10

A C G T N

Nucleotide Composition MAPQ >= 3

A C G T N

Nucleotide Composition MAPQ < 3

A C G T N

Nucleotide Composition Unmapped

A C G T N

Length Distribution MAPQ >= 30

Length Distribution MAPQ >= 20

Length Distribution MAPQ >= 10

Length Distribution MAPQ >= 3

Length Distribution MAPQ < 3

Length Distribution Unmapped

Top 5 over-represented 2-mers MAPQ >= 30

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

CC

GC

AG

CT

GG

CC

GA

GC

AG

GG

AG

CC

GC

AA

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

GG

CC

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

GG

CC

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CA

GA

CC

GG

AG

GC

CT

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GC

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CT

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AG

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CC

GC

CT

AG

GG

CC

GC

AG

CT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 20

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

CC

GC

AG

CT

GA

GG

CA

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AA

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AC

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CC

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CC

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CG

AG

GG

CC

GC

CG

AG

GG

CC

GC

CG

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 10

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

AG

CA

CT

CC

GG

GA

AA

AG

CA

AG

GG

AA

TT

CT

GG

AG

TG

TT

CT

GG

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CT

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AG

CA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

AG

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CT

GC

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GA

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AT

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CA

CC

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AG

CT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ < 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

CC

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GC

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GA

CA

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AA

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CT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers Unmapped

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GA

GG

AA

AG

CC

AT

GG

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GC

TC

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CC

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AA

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GG

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CC

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GT

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GA

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GA

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AT

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TC

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CA

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AC

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AG

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AT

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TC

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CT

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TC

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TT

GT

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TA

GG

CC

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AT

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TG

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AA

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AG

GT

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CG

TC

GG

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CT

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TC

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CG

CT

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TG

GG

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GA

CT

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CG

TT

GG

CC

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CG

TG

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CC

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CG

GA

GG

CC

GC

AA

AA

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CC

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GA

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CG

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AA

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AA

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GA

 
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 20 over-represented 10-mers

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3 Unmapped
SeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-value
CCGCCGCCGC 998117 0.0e+00 GGGGGGGGGG 96614 0.0e+00 GGAGGCTGAG 33821 0.0e+00 CTCCTGACCT 8257 0.0e+00 GAGGCTGAGG 63138 0.0e+00 GGAAGAGCGG 3333521 0.0e+00
CGCCGCCGCC 975914 0.0e+00 AAAAAAAAAA 69193 0.0e+00 GAGGCTGAGG 33536 0.0e+00 GAGGCTGAGG 7668 0.0e+00 GGAGGCTGAG 63090 0.0e+00 CGGAAGAGCG 3326142 0.0e+00
GGCGGCGGCG 916812 0.0e+00 TTTTTTTTTT 68785 0.0e+00 AGGCTGAGGC 32543 0.0e+00 TCCTGACCTC 7631 0.0e+00 CTCCTGACCT 61455 0.0e+00 GAAGAGCGGT 3313564 0.0e+00
GCCGCCGCCG 886510 0.0e+00 GGCGGGGGGG 58095 0.0e+00 GGCTGAGGCA 31286 0.0e+00 GGAGGCTGAG 7611 0.0e+00 AGGCTGAGGC 59916 0.0e+00 AAGAGCGGTT 3264597 0.0e+00
CGGCGGCGGC 809412 0.0e+00 CCCCCCCCCC 56498 0.0e+00 GCTGAGGCAG 30853 0.0e+00 AGGCTGAGGC 7564 0.0e+00 CCCAGCTACT 56244 0.0e+00 CAGCAGGAAT 3256495 0.0e+00
CCTGTAATCC 529222 0.0e+00 GCGGCGGCGG 48334 0.0e+00 CTGAGGCAGG 30115 0.0e+00 CTGAGGCAGG 7241 0.0e+00 GGCTGAGGCA 56031 0.0e+00 AGCAGGAATG 3253896 0.0e+00
TAATCCCAGC 519521 0.0e+00 GCGGGGGGGG 45334 0.0e+00 TCCCAGCTAC 29779 0.0e+00 GCTGAGGCAG 7228 0.0e+00 GCTGAGGCAG 55840 0.0e+00 AGAGCGGTTC 3253707 0.0e+00
GGAGGCTGAG 485145 0.0e+00 GAGGCTGAGG 40486 0.0e+00 CCCAGCTACT 29548 0.0e+00 GGCTGAGGCA 7206 0.0e+00 TCCTGACCTC 55829 0.0e+00 GAGCGGTTCA 3245043 0.0e+00
CCCAGGCTGG 484767 0.0e+00 GGAGGCTGAG 40094 0.0e+00 TGAGGCAGGA 28700 0.0e+00 TGAGGCAGGA 6997 0.0e+00 CTGAGGCAGG 55658 0.0e+00 GCAGGAATGC 3244237 0.0e+00
GAGGCTGAGG 484105 0.0e+00 GGCGGCGGCG 39990 0.0e+00 TAATCCCAGC 28630 0.0e+00 TCCCAGCTAC 6935 0.0e+00 TCCCAGCTAC 55064 0.0e+00 AGCGGTTCAG 3238393 0.0e+00
GAGGAGGAGG 424981 0.0e+00 TAATCCCAGC 39570 0.0e+00 GAGGCAGGAG 28437 0.0e+00 AGGCAGGAGA 6919 0.0e+00 TAATCCCAGC 52992 0.0e+00 CAGGAATGCC 3236521 0.0e+00
GGAGGAGGAG 409230 0.0e+00 CGGGGGGGGG 38391 0.0e+00 AGGCAGGAGA 28418 0.0e+00 GAGGCAGGAG 6897 0.0e+00 TGAGGCAGGA 52714 0.0e+00 AGGAATGCCG 3235418 0.0e+00
CCAGGCTGGA 406389 0.0e+00 TGTAATCCCA 38267 0.0e+00 GGCAGGAGAA 28228 0.0e+00 GGCAGGAGAA 6896 0.0e+00 GAGGCAGGAG 52261 0.0e+00 GGTTCAGCAG 3230576 0.0e+00
CCTCCTCCTC 400848 0.0e+00 GTAATCCCAG 37779 0.0e+00 GCAGGAGAAT 27882 0.0e+00 CCCAGCTACT 6855 0.0e+00 GCTCACTGCA 52043 0.0e+00 CGGTTCAGCA 3229921 0.0e+00
CTCCTCCTCC 394320 0.0e+00 CTGTAATCCC 37522 0.0e+00 CCTCAGCCTC 27717 0.0e+00 GCAGGAGAAT 6746 0.0e+00 GGGAGGCTGA 51920 0.0e+00 GGAATGCCGA 3229889 0.0e+00
CCTCAGCCTC 388383 0.0e+00 CCTGTAATCC 37483 0.0e+00 CTCAGCCTCC 27661 0.0e+00 CCTCAGCCTC 6194 0.0e+00 AGGCAGGAGA 51665 0.0e+00 GCGGTTCAGC 3228709 0.0e+00
AGGCTGGAGT 382904 0.0e+00 AGGCTGAGGC 37449 0.0e+00 GTAATCCCAG 27408 0.0e+00 CTCAGCCTCC 6155 0.0e+00 TGTAATCCCA 51551 0.0e+00 GTTCAGCAGG 3225389 0.0e+00
TGGGATTACA 379138 0.0e+00 CGGCGGCGGC 37368 0.0e+00 TGTAATCCCA 27143 0.0e+00 GGGAGGCTGA 6076 0.0e+00 GTAATCCCAG 50902 0.0e+00 TCAGCAGGAA 3224423 0.0e+00
GCTCACTGCA 372488 0.0e+00 GCGGCGGGGG 35680 0.0e+00 CTCCTGACCT 26910 0.0e+00 GCCTCAGCCT 6057 0.0e+00 GGCAGGAGAA 50826 0.0e+00 GAATGCCGAG 3224239 0.0e+00
GCTGGGATTA 367940 0.0e+00 GGCTGAGGCA 33627 0.0e+00 GCCTCAGCCT 26503 0.0e+00 TAATCCCAGC 5910 0.0e+00 CCTCAGCCTC 50801 0.0e+00 TTCAGCAGGA 3221163 0.0e+00