gfp_k36

Mapping stats: 97% aligned (81.1M aligned out of 83.8M total) 

Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.

Mean Base Quality

Mean base quality of reads with low and high mapping quality.

Error Profile MAPQ >= 30

Mismatches Insertions Deletions

Error Profile MAPQ >= 20

Mismatches Insertions Deletions

Error Profile MAPQ >= 10

Mismatches Insertions Deletions

Error Profile MAPQ >= 3

Mismatches Insertions Deletions

Error Profile MAPQ < 3

Mismatches Insertions Deletions

Nucleotide Over-representation along read

Mer Q 1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
AAMAPQ >= 30 9.5 9.1 8.6 8.4 8.6 8.5 8.5 8.3 8.3 8.5 8.4 9.2 9.1 8.2 8.1 8.0 7.9 7.8 7.8 7.8 7.8 7.8 7.9 7.9 7.9 7.8 7.8 7.8 7.7 7.7 7.7 7.7 7.8 7.8 7.8 7.7 7.7 7.7 7.7 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.6 7.6 7.6 7.6 7.6 7.6 7.7 7.7 7.7 7.7 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.5 7.5 7.6 7.6 7.6
AAMAPQ >= 20 8.4 8.1 7.5 7.3 7.6 7.4 7.5 7.2 7.3 7.5 7.6 8.3 8.3 7.2 7.1 7.0 6.9 6.7 6.8 6.7 6.7 6.8 6.9 6.9 7.0 6.8 6.8 6.7 6.7 6.8 6.8 6.8 6.8 6.9 7.0 6.9 7.0 6.9 6.9 6.8 7.0 6.8 6.8 6.8 6.8 7.0 7.0 7.0 7.0 7.0 7.0 7.1 7.1 7.1 7.3 7.3 7.5 7.3 7.4 7.5 7.5 7.6 7.6 7.7 7.7 7.6 7.6 7.6 7.5 7.5 7.4 7.5 7.5 7.5
AAMAPQ >= 10 7.3 7.1 6.6 6.4 6.6 6.5 6.5 6.2 6.4 6.6 6.7 7.4 7.3 6.3 6.1 6.2 6.1 5.8 6.1 6.0 5.9 6.0 6.1 6.0 6.2 6.0 5.9 5.9 5.8 5.9 5.8 5.9 5.9 6.0 6.0 6.1 6.3 6.2 6.3 6.1 6.3 6.1 6.0 6.1 6.1 6.3 6.4 6.4 6.4 6.5 6.5 6.6 6.6 6.6 6.7 6.7 7.0 6.8 6.8 7.0 6.9 7.1 7.2 7.2 7.3 7.2 7.2 7.3 7.2 7.3 7.3 7.4 7.5 7.5
AAMAPQ >= 3 7.5 7.2 6.8 6.6 6.8 6.6 6.8 6.7 7.1 7.0 6.9 7.8 7.5 6.5 6.3 6.5 6.3 6.0 5.8 5.7 5.8 5.8 5.9 5.8 6.0 5.7 5.7 5.8 5.9 6.1 6.2 6.2 6.3 6.2 6.2 6.3 6.5 6.4 6.5 6.2 6.4 6.1 5.9 6.0 6.2 6.6 6.7 6.9 6.9 6.9 6.7 6.9 7.0 7.0 7.3 7.2 7.4 7.2 7.1 7.3 7.1 7.5 7.8 7.7 7.6 7.5 7.5 7.6 7.6 7.7 7.8 7.8 7.8 7.8
AAMAPQ < 3 8.6 8.4 7.8 7.6 7.7 7.7 7.8 7.5 7.5 7.7 7.8 7.9 7.8 7.5 7.4 7.4 7.3 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.3 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.3 7.3 7.2 7.2 7.2 7.2 7.1 7.2 7.2 7.3 7.3 7.3 7.3 7.3 7.3 7.4 7.4 7.5 7.6 7.6 7.6 7.5 7.5 7.5 7.5 7.7 7.7 7.8 7.8 7.7 7.8 7.8 7.7 7.7 7.7 7.7 7.8 7.7
AAUnmapped 9.7 9.5 8.9 8.5 9.0 9.2 14.8 9.1 9.0 9.5 9.8 8.0 8.0 9.7 9.9 9.9 9.8 9.7 9.5 9.7 9.9 9.8 9.8 15.1 9.8 9.7 9.7 9.6 9.5 9.7 9.8 9.7 9.6 9.4 9.4 9.4 9.3 9.3 9.0 9.2 9.2 9.2 9.0 8.9 8.9 8.9 8.8 8.6 8.3 8.3 8.4 8.5 8.3 8.1 8.2 8.3 8.3 8.2 7.9 7.9 8.0 8.1 8.0 7.8 8.0 8.2 13.5 13.5 13.3 13.2 13.2 13.0 12.5 12.0
ACMAPQ >= 30 5.6 5.2 5.1 5.0 5.2 5.1 5.2 5.0 5.0 5.1 5.2 4.3 6.2 5.1 5.2 5.2 5.2 5.2 5.1 5.2 5.2 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.3 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.1 5.1 5.1
ACMAPQ >= 20 5.5 5.0 5.0 5.0 5.2 5.1 5.2 5.0 5.1 5.0 5.2 4.2 6.3 5.2 5.3 5.2 5.3 5.2 5.1 5.2 5.3 5.1 5.1 5.1 5.1 5.2 5.0 5.0 5.1 5.1 5.1 5.2 5.3 5.2 5.1 5.3 5.2 5.2 5.2 5.2 5.3 5.2 5.2 5.1 5.1 5.1 5.1 5.1 5.2 5.2 5.1 5.2 5.1 5.1 5.2 5.2 5.1 5.2 5.3 5.2 5.5 5.3 5.3 5.3 5.3 5.2 5.2 5.1 5.2 5.0 5.2 5.1 5.1 5.2
ACMAPQ >= 10 5.1 4.8 4.7 4.8 5.1 5.0 5.1 4.7 5.0 4.8 5.0 4.2 6.1 5.0 5.2 5.1 5.2 5.0 4.9 4.9 5.2 5.0 5.0 4.9 4.9 5.0 4.9 4.9 5.1 5.0 5.1 5.2 5.2 5.1 5.0 5.2 5.1 5.1 5.1 5.1 5.3 5.1 5.0 4.8 4.9 4.9 5.0 5.0 5.2 5.2 5.0 5.2 5.1 5.0 5.2 5.1 5.1 5.2 5.4 5.3 5.8 5.4 5.5 5.4 5.4 5.3 5.2 5.2 5.2 5.0 5.3 5.2 5.2 5.3
ACMAPQ >= 3 4.9 4.8 4.6 5.0 5.0 4.8 5.0 4.6 5.1 5.0 5.2 4.3 6.2 5.0 5.3 4.9 5.1 4.9 4.9 4.8 5.2 4.9 5.0 5.0 5.1 5.1 5.0 5.0 5.1 5.1 5.3 5.3 5.2 5.1 4.9 5.2 5.0 5.1 5.0 5.1 5.4 5.0 5.1 5.0 4.9 4.9 5.0 4.9 5.1 5.1 5.0 5.1 5.0 4.9 4.9 4.9 5.0 5.2 5.2 5.3 5.6 5.4 5.4 5.3 5.2 5.2 5.2 5.1 5.2 5.0 5.3 5.2 5.4 5.5
ACMAPQ < 3 5.3 5.0 4.9 4.9 5.1 5.0 5.1 4.9 5.0 5.0 5.1 4.2 5.5 5.1 5.1 5.1 5.1 5.1 5.0 5.0 5.1 5.0 5.1 5.0 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.1 5.0 5.0 5.1 5.1 5.1 5.2 5.2 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.2 5.3 5.3 5.4 5.3 5.3 5.3 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.1 5.2 5.2
ACUnmapped 5.5 5.1 5.0 4.7 4.9 4.8 4.9 4.7 4.7 4.6 4.7 3.7 3.7 4.6 4.6 4.6 4.6 4.5 4.5 4.4 4.5 4.4 4.4 4.3 4.4 4.4 4.4 4.5 4.5 4.4 4.5 4.5 9.8 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.3 4.2 4.3 4.2 4.2 4.2 4.2 4.3 4.3 4.3 4.3 4.2 4.2 4.3 4.2 4.3 4.3 4.3 4.4 4.4 4.3 4.3 4.2 4.3 4.3 4.3 4.3 4.3 4.4 4.4 4.4 4.4
AGMAPQ >= 30 8.8 7.9 7.5 7.7 7.6 7.5 7.2 7.2 7.2 7.4 7.4 6.2 8.0 7.4 7.4 7.4 7.4 7.5 7.5 7.5 7.5 7.4 7.5 7.5 7.6 7.6 7.5 7.6 7.6 7.6 7.6 7.6 7.6 7.5 7.5 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.5 7.6 7.5 7.6 7.6 7.6 7.7 7.7 7.6 7.6 7.6 7.6 7.7 7.6 7.6 7.6 7.6 7.7 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.7 7.7 7.7 7.6 7.6
AGMAPQ >= 20 8.9 7.9 7.5 7.5 7.5 7.3 7.1 7.2 7.2 7.4 7.4 6.0 8.0 7.3 7.3 7.2 7.3 7.4 7.4 7.4 7.5 7.3 7.8 7.6 7.7 7.7 7.6 7.7 7.6 7.8 7.5 7.5 7.7 7.5 7.4 7.7 7.5 7.4 7.6 7.5 7.5 7.4 7.3 7.4 7.4 7.6 7.6 7.5 7.7 7.7 7.6 7.5 7.5 7.6 7.7 7.5 7.4 7.5 7.3 7.5 7.4 7.4 7.3 7.3 7.2 7.3 7.4 7.5 7.5 7.6 7.7 7.7 7.5 7.6
AGMAPQ >= 10 8.9 7.7 7.3 7.5 7.5 7.1 7.1 7.2 7.3 7.6 7.5 6.1 8.1 7.4 7.4 7.2 7.4 7.6 7.5 7.6 7.6 7.3 8.0 7.7 7.9 7.7 7.6 7.9 7.7 7.9 7.5 7.6 7.7 7.4 7.3 7.7 7.5 7.3 7.5 7.6 7.5 7.6 7.2 7.5 7.3 7.7 7.6 7.5 7.7 7.7 7.5 7.4 7.5 7.6 7.7 7.5 7.5 7.6 7.3 7.6 7.5 7.4 7.4 7.5 7.3 7.5 7.5 7.7 7.8 7.6 7.7 7.9 7.7 7.6
AGMAPQ >= 3 8.3 7.1 6.6 6.9 7.1 6.9 6.9 6.9 7.3 7.5 7.4 6.1 8.2 7.3 7.5 7.4 7.7 7.9 7.8 7.5 8.0 7.7 8.3 7.8 7.6 7.6 7.4 7.5 7.5 7.6 7.5 7.6 7.7 7.4 7.0 7.3 7.2 7.1 7.1 7.0 6.9 6.8 6.5 6.9 6.7 7.2 7.4 7.3 7.5 7.4 7.3 7.3 7.3 7.5 7.5 7.7 7.3 7.4 7.1 7.3 7.4 7.2 7.3 7.4 7.1 7.3 7.1 7.4 7.5 7.4 7.8 7.8 7.3 7.0
AGMAPQ < 3 8.5 7.7 7.2 7.4 7.4 7.1 7.0 7.0 7.1 7.2 7.3 6.1 7.4 7.2 7.3 7.2 7.3 7.4 7.3 7.3 7.4 7.3 7.6 7.4 7.5 7.4 7.3 7.4 7.4 7.4 7.3 7.3 7.4 7.3 7.2 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.1 7.3 7.2 7.3 7.4 7.3 7.5 7.4 7.4 7.3 7.3 7.4 7.4 7.4 7.3 7.3 7.2 7.4 7.3 7.3 7.2 7.3 7.2 7.3 7.3 7.4 7.4 7.4 7.5 7.5 7.4 7.3
AGUnmapped 7.1 6.5 6.3 6.2 6.2 6.0 5.8 11.3 5.6 11.3 5.9 4.6 4.6 5.7 5.7 5.7 5.7 11.2 5.6 5.6 11.1 5.6 5.8 5.7 5.8 5.9 5.9 6.0 5.9 6.0 11.5 6.0 6.0 5.9 5.9 5.9 5.8 5.8 11.2 5.7 5.8 5.7 5.6 5.7 5.7 5.6 5.7 5.6 5.9 5.9 6.0 5.8 5.9 5.8 6.0 5.9 5.9 5.9 5.8 6.0 6.0 5.9 6.0 6.0 6.0 6.0 5.9 6.0 5.9 6.0 5.9 5.9 5.9 6.0
ATMAPQ >= 30 7.4 6.4 6.7 6.5 6.5 6.4 6.6 6.4 6.2 6.2 6.2 5.2 7.4 6.2 6.2 6.1 6.1 6.1 6.0 6.1 6.0 6.0 6.0 6.1 6.0 6.0 5.9 6.0 5.9 5.9 5.9 5.9 5.9 6.0 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.8 5.8 5.9 5.8 5.9 5.9 5.8 5.9 5.9 5.9 5.9 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.7 5.8 5.8 5.8 5.8
ATMAPQ >= 20 6.7 5.8 6.1 5.9 5.9 5.8 6.0 5.7 5.5 5.6 5.7 4.8 7.0 5.6 5.6 5.5 5.5 5.5 5.4 5.5 5.3 5.4 5.4 5.5 5.4 5.5 5.3 5.4 5.3 5.3 5.3 5.3 5.4 5.4 5.3 5.4 5.3 5.4 5.3 5.3 5.3 5.5 5.3 5.4 5.3 5.4 5.3 5.2 5.2 5.4 5.3 5.3 5.3 5.2 5.4 5.4 5.3 5.3 5.2 5.2 5.3 5.1 5.2 5.2 5.1 5.2 5.1 5.2 5.0 5.0 5.2 5.2 5.3 5.3
ATMAPQ >= 10 6.3 5.6 5.8 5.6 5.7 5.5 5.7 5.5 5.1 5.3 5.4 4.7 6.5 5.4 5.3 5.2 5.2 5.2 5.0 5.3 5.0 5.0 5.1 5.3 5.1 5.3 5.1 5.2 5.1 5.0 5.1 5.0 5.1 5.2 5.0 5.1 5.0 5.2 5.1 5.2 5.2 5.3 5.1 5.2 5.1 5.2 5.1 5.0 5.1 5.3 5.1 5.2 5.2 5.1 5.2 5.2 5.2 5.3 5.1 5.1 5.1 4.9 5.1 5.1 5.0 5.1 4.9 5.1 4.8 4.9 5.0 5.1 5.1 5.2
ATMAPQ >= 3 6.8 6.2 6.4 6.2 6.2 6.0 6.1 5.9 5.5 5.6 5.7 4.9 7.0 5.6 5.5 5.6 5.6 5.4 5.1 5.3 5.0 5.1 5.3 5.6 5.4 5.6 5.2 5.4 5.2 5.2 5.4 5.5 5.7 5.8 5.5 5.6 5.6 5.8 5.6 5.7 5.8 5.9 5.5 5.3 5.2 5.3 5.2 5.1 5.5 5.5 5.4 5.3 5.2 5.1 5.3 5.4 5.3 5.5 5.5 5.4 5.4 5.3 5.5 5.6 5.6 5.5 5.3 5.6 5.3 5.4 5.5 5.6 5.8 5.7
ATMAPQ < 3 7.3 6.3 6.6 6.4 6.4 6.3 6.6 6.3 6.0 6.0 6.1 5.2 6.5 6.1 6.0 6.0 6.0 5.9 5.9 6.0 5.9 6.0 5.9 6.0 5.9 6.0 5.9 6.0 5.9 5.9 5.9 5.9 6.0 6.0 5.9 5.9 5.9 6.0 5.9 6.0 5.9 6.0 5.9 5.9 5.9 5.9 5.9 5.8 5.8 6.0 5.9 5.9 5.9 5.8 6.0 5.9 5.9 5.9 5.8 5.8 5.9 5.8 5.8 5.8 5.9 5.8 5.7 5.9 5.7 5.7 5.8 5.8 5.9 5.9
ATUnmapped 8.1 12.6 7.3 6.8 6.8 6.9 7.1 6.8 6.4 6.2 6.5 5.1 5.2 6.2 6.0 6.3 6.2 6.1 5.9 5.8 5.9 6.1 5.9 5.8 11.2 6.0 5.9 5.9 5.7 5.6 5.9 6.0 5.9 5.7 5.5 5.7 5.8 5.7 5.4 5.3 5.6 5.6 11.1 5.4 5.4 5.5 5.6 5.4 5.3 10.7 5.6 5.5 5.5 5.3 5.3 5.6 5.6 5.5 5.3 5.2 5.6 5.5 5.5 5.4 5.3 5.6 5.6 5.6 5.4 5.4 5.7 5.9 5.8 5.7
CAMAPQ >= 30 8.4 6.8 7.4 7.5 7.1 7.4 7.1 7.5 7.6 7.6 7.5 8.2 6.4 7.6 7.6 7.6 7.6 7.6 7.6 7.7 7.7 7.7 7.6 7.7 7.6 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.6 7.7 7.7 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.8 7.7 7.8 7.8 7.7 7.7 7.7 7.7 7.7 7.8 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.6 7.7 7.7 7.7
CAMAPQ >= 20 8.3 6.7 7.3 7.5 7.2 7.5 7.1 7.7 7.6 7.7 7.6 8.4 6.4 7.7 7.7 7.7 7.7 7.7 7.7 7.9 7.7 7.8 7.7 7.9 7.7 7.7 7.7 7.8 7.8 7.8 7.8 8.0 7.8 7.6 7.8 7.8 7.7 7.8 7.7 7.7 7.6 7.7 7.7 7.7 7.9 7.8 7.7 7.8 7.9 7.6 7.8 7.7 7.7 7.9 7.6 7.6 7.6 7.6 7.6 7.8 7.5 7.7 7.6 7.7 7.5 7.6 7.6 7.6 7.6 7.7 7.6 7.7 7.7 7.6
CAMAPQ >= 10 8.2 6.6 7.3 7.6 7.1 7.4 7.0 7.7 7.6 7.8 7.5 8.4 6.5 7.6 7.6 7.6 7.6 7.6 7.6 7.8 7.5 7.8 7.6 7.9 7.6 7.6 7.8 7.9 8.0 8.0 8.0 8.1 7.9 7.6 8.0 8.0 7.8 8.0 7.8 7.9 7.6 7.6 7.8 7.6 7.9 7.8 7.7 7.9 7.9 7.6 7.8 7.6 7.8 8.0 7.5 7.8 7.6 7.7 7.8 8.0 7.6 8.0 7.6 7.9 7.5 7.7 7.8 7.8 7.6 7.7 7.8 7.8 7.8 7.6
CAMAPQ >= 3 8.1 6.5 7.5 7.6 7.4 7.6 7.1 8.0 7.7 7.8 7.6 8.5 6.4 7.4 7.3 7.2 7.2 7.1 7.0 7.5 7.1 7.6 7.2 7.5 7.3 7.3 7.5 7.8 7.8 7.9 8.0 8.1 7.8 7.5 8.0 7.8 8.0 7.8 7.5 7.6 7.2 7.3 7.4 7.2 7.7 7.6 7.5 7.7 7.4 7.2 7.6 7.3 7.3 7.4 7.1 7.2 7.1 7.1 7.1 7.4 7.3 7.5 7.1 7.2 7.0 7.3 7.5 7.5 7.4 7.6 7.4 7.4 7.4 7.5
CAMAPQ < 3 8.3 6.7 7.4 7.6 7.2 7.5 7.1 7.6 7.7 7.8 7.6 7.7 6.4 7.6 7.6 7.6 7.6 7.6 7.6 7.7 7.6 7.7 7.6 7.7 7.6 7.6 7.7 7.8 7.8 7.8 7.9 7.9 7.8 7.6 7.8 7.8 7.8 7.8 7.7 7.8 7.7 7.6 7.7 7.6 7.8 7.7 7.6 7.8 7.8 7.7 7.7 7.7 7.8 7.8 7.6 7.6 7.7 7.6 7.7 7.8 7.6 7.8 7.6 7.7 7.6 7.7 7.7 7.7 7.7 7.7 7.6 7.7 7.7 7.7
CAUnmapped 7.8 6.3 6.6 6.8 6.8 7.0 6.5 6.6 6.8 6.9 6.7 5.3 5.1 6.5 6.5 6.5 11.8 6.3 6.3 12.0 6.4 6.3 6.1 6.2 6.3 6.2 6.2 6.0 6.2 6.4 6.3 6.2 6.0 6.0 6.2 6.1 6.0 5.9 6.0 6.1 6.0 11.4 5.9 6.1 6.1 6.1 5.9 6.0 6.2 6.4 6.4 6.2 6.1 6.2 6.3 6.2 6.1 6.0 6.1 6.4 6.3 6.3 6.2 6.2 6.4 6.3 6.3 6.2 6.2 6.3 6.2 6.1 6.2 6.3
CCMAPQ >= 30 6.2 5.8 6.0 5.6 5.8 6.1 6.2 6.3 6.2 6.2 6.3 5.4 5.4 6.5 6.5 6.5 6.6 6.7 6.7 6.7 6.7 6.7 6.7 6.6 6.6 6.6 6.7 6.7 6.7 6.7 6.7 6.6 6.6 6.7 6.7 6.6 6.6 6.6 6.6 6.6 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.6 6.7 6.7 6.7 6.8 6.8 6.8 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.8 6.8 6.9 6.9 6.9
CCMAPQ >= 20 6.3 5.9 6.0 5.7 5.9 6.3 6.3 6.5 6.4 6.4 6.5 5.4 5.3 6.7 6.6 6.8 6.9 7.0 7.1 7.1 7.0 7.2 7.1 6.8 7.0 7.0 7.2 7.2 7.1 7.1 7.0 6.9 6.9 7.0 7.0 6.9 7.0 6.9 7.0 6.9 7.0 7.1 7.1 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.0 7.0 6.9 6.9 7.0 7.1 7.0 7.2 7.3 7.1 7.4 7.5 7.5 7.5 7.6 7.6 7.6 7.7 7.5 7.4 7.7 7.7 7.8
CCMAPQ >= 10 6.5 6.2 6.2 5.8 6.1 6.6 6.6 6.8 6.7 6.8 6.7 5.6 5.5 7.1 6.9 7.2 7.3 7.6 7.5 7.4 7.5 7.7 7.6 7.2 7.5 7.6 7.9 7.8 7.7 7.8 7.6 7.5 7.5 7.6 7.7 7.5 7.7 7.5 7.5 7.6 7.8 7.8 7.8 7.9 8.0 8.1 7.8 7.8 7.9 7.9 7.9 7.5 7.7 7.6 7.6 7.7 7.7 7.6 7.9 8.0 7.7 8.0 8.2 8.2 8.3 8.3 8.3 8.4 8.4 8.2 8.1 8.4 8.4 8.7
CCMAPQ >= 3 6.5 6.2 6.1 5.7 5.9 6.4 6.6 7.0 6.9 7.1 7.1 5.7 5.5 7.2 6.8 7.2 7.4 7.5 7.7 7.5 7.4 7.5 7.3 7.0 7.2 7.4 7.5 7.5 7.4 7.3 7.1 7.2 7.2 7.6 7.8 7.6 7.7 7.4 7.7 7.5 7.9 8.1 8.2 8.5 8.7 8.7 8.6 8.6 8.6 8.5 8.5 8.1 8.1 7.9 7.7 7.5 7.7 7.7 7.7 7.6 7.3 7.4 7.5 7.6 7.5 7.7 7.8 7.8 7.7 7.5 7.6 8.1 8.4 8.7
CCMAPQ < 3 6.3 5.9 6.0 5.7 5.9 6.2 6.3 6.6 6.4 6.5 6.5 5.4 5.4 6.7 6.6 6.7 6.8 7.0 7.0 6.9 6.9 7.0 6.9 6.8 6.9 7.0 7.0 7.0 6.9 7.0 6.9 6.9 6.9 7.0 7.0 6.8 6.9 6.9 6.9 6.9 7.0 7.1 7.1 7.2 7.2 7.2 7.1 7.2 7.1 7.1 7.1 7.0 7.1 7.0 6.9 6.9 7.0 7.0 7.1 7.1 7.0 7.1 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.1 7.2 7.3 7.4 7.5
CCUnmapped 5.2 4.8 4.9 4.9 5.0 5.0 4.9 5.0 5.1 5.0 4.9 3.8 3.9 5.1 5.0 4.9 4.9 5.0 5.1 5.1 5.0 4.9 4.9 5.0 5.0 5.0 4.9 10.4 5.2 5.1 5.1 5.0 5.2 10.8 5.5 5.4 5.5 5.7 6.0 6.1 6.1 6.1 6.0 6.3 6.4 6.5 6.7 7.0 7.0 7.1 7.1 7.0 12.4 7.1 6.9 6.9 6.8 6.9 7.1 7.0 6.9 6.9 6.9 7.1 7.0 6.9 6.8 6.8 7.0 6.8 6.8 6.8 6.9 7.1
CGMAPQ >= 30 1.2 1.2 1.2 1.4 1.4 1.4 1.3 1.5 1.5 1.4 1.4 1.2 1.2 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.6 1.5 1.5 1.6 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.6 1.5 1.5 1.5 1.5 1.6 1.6 1.5 1.5 1.5 1.5 1.6 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.5 1.7 1.6 1.5 1.5 1.5
CGMAPQ >= 20 1.8 1.7 1.8 2.1 2.0 2.2 2.0 2.3 2.2 2.1 2.1 1.8 1.8 2.2 2.1 2.2 2.2 2.1 2.1 2.2 2.2 2.2 2.2 2.1 2.1 2.1 2.2 2.1 2.1 2.2 2.2 2.2 2.1 2.1 2.2 2.3 2.2 2.2 2.4 2.3 2.2 2.1 2.2 2.3 2.2 2.2 2.2 2.2 2.3 2.2 2.3 2.2 2.3 2.5 2.3 2.3 2.2 2.3 2.2 2.5 2.3 2.3 2.2 2.2 2.2 2.2 2.2 2.2 2.3 2.5 2.3 2.2 2.2 2.2
CGMAPQ >= 10 2.1 2.0 2.1 2.5 2.4 2.6 2.3 2.8 2.5 2.3 2.4 2.1 2.1 2.5 2.4 2.6 2.4 2.4 2.4 2.6 2.4 2.6 2.5 2.5 2.4 2.4 2.5 2.5 2.5 2.6 2.5 2.6 2.5 2.4 2.5 2.6 2.6 2.6 2.6 2.7 2.5 2.5 2.6 2.6 2.7 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.8 2.6 2.6 2.5 2.6 2.5 2.7 2.5 2.5 2.5 2.5 2.4 2.4 2.5 2.5 2.5 2.8 2.6 2.5 2.4 2.5
CGMAPQ >= 3 2.1 2.0 2.1 2.5 2.4 2.6 2.3 2.9 2.5 2.2 2.4 2.2 2.1 2.6 2.6 2.7 2.5 2.5 2.5 2.9 2.8 2.9 2.9 2.7 2.5 2.6 2.7 2.7 2.7 2.7 2.7 2.8 2.6 2.5 2.6 2.8 2.8 2.8 2.8 2.8 2.5 2.5 2.7 2.8 2.9 2.8 2.7 2.7 2.7 2.8 2.8 2.8 2.9 3.1 2.8 2.9 2.5 2.7 2.7 2.8 2.7 2.5 2.4 2.5 2.3 2.3 2.5 2.6 2.6 2.9 2.6 2.6 2.4 2.5
CGMAPQ < 3 1.8 1.7 1.8 2.0 2.0 2.1 1.9 2.2 2.1 2.0 2.0 1.8 1.7 2.1 2.1 2.1 2.0 2.0 2.1 2.1 2.1 2.1 2.2 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.2 2.1 2.0 2.1 2.2 2.2 2.2 2.2 2.2 2.1 2.1 2.2 2.2 2.2 2.1 2.1 2.2 2.2 2.2 2.2 2.2 2.2 2.3 2.2 2.2 2.1 2.1 2.1 2.2 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.3 2.1 2.1 2.1 2.1
CGUnmapped 1.8 1.7 1.8 7.4 1.8 1.9 1.7 1.9 2.0 1.9 1.8 6.2 1.5 2.0 1.9 1.9 1.9 1.9 2.0 2.0 1.9 1.9 2.0 2.0 2.0 2.0 2.1 2.1 7.6 2.1 2.1 2.1 2.1 2.1 7.6 2.2 2.1 2.2 2.3 2.2 2.2 2.2 2.2 2.2 2.2 2.2 7.6 2.2 2.4 2.4 2.4 2.4 2.4 8.0 2.5 2.5 2.4 2.4 2.5 2.7 2.5 2.5 2.5 2.5 2.6 2.5 2.5 2.6 2.6 2.7 2.6 2.6 2.6 2.7
CTMAPQ >= 30 8.2 7.2 7.3 7.4 7.0 7.3 7.5 7.6 7.4 7.4 7.4 6.4 6.3 7.5 7.6 7.5 7.5 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.7 7.6 7.7 7.6 7.5 7.6 7.6 7.6 7.6 7.7 7.7 7.7 7.6 7.6 7.7 7.6 7.6 7.7 7.7 7.7 7.7 7.6 7.6 7.6 7.7 7.7 7.7 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.6 7.6 7.7 7.7 7.6
CTMAPQ >= 20 8.1 7.2 7.4 7.4 7.0 7.3 7.5 7.6 7.3 7.4 7.3 6.5 6.3 7.5 7.7 7.7 7.6 7.8 7.8 7.7 7.8 7.7 7.6 7.6 7.6 7.6 7.6 7.6 7.5 7.5 7.5 7.4 7.7 7.5 7.7 7.4 7.5 7.5 7.5 7.5 7.6 7.8 7.8 7.8 7.7 7.7 7.9 7.6 7.6 7.8 7.7 7.8 7.8 7.4 7.5 7.5 7.7 7.7 7.6 7.6 7.7 7.7 7.6 7.6 7.7 7.7 7.6 7.6 7.6 7.3 7.2 7.3 7.3 7.3
CTMAPQ >= 10 8.1 7.2 7.5 7.4 7.0 7.4 7.5 7.7 7.1 7.4 7.3 6.7 6.6 7.6 8.0 7.9 7.6 7.9 7.9 7.6 7.8 7.8 7.6 7.6 7.5 7.5 7.6 7.6 7.4 7.5 7.6 7.4 8.0 7.6 7.8 7.4 7.6 7.5 7.6 7.5 7.6 8.0 7.9 8.0 7.7 7.8 8.1 7.8 7.7 8.1 8.0 8.1 8.1 7.6 7.8 7.7 8.1 8.1 7.9 8.0 8.1 8.0 8.0 7.9 8.1 8.0 7.8 7.8 7.9 7.4 7.3 7.4 7.4 7.3
CTMAPQ >= 3 8.0 7.1 7.4 7.3 7.0 7.2 6.9 7.1 6.8 7.1 7.0 6.5 6.4 7.3 7.7 7.3 7.3 7.6 7.8 7.5 7.5 7.4 7.3 7.2 7.4 7.4 7.5 7.1 7.1 6.9 6.8 6.6 7.2 6.9 7.5 7.1 7.3 7.3 7.4 7.5 7.6 8.1 7.9 8.1 7.6 7.6 7.7 7.5 7.6 7.8 8.0 8.1 8.2 7.4 7.9 7.6 8.1 8.2 8.2 8.0 8.1 7.9 7.9 7.7 8.0 7.8 7.6 7.7 7.5 7.1 6.9 6.7 6.8 7.0
CTMAPQ < 3 7.9 7.0 7.2 7.2 6.9 7.2 7.3 7.4 7.1 7.1 7.2 6.3 6.2 7.3 7.5 7.4 7.3 7.5 7.5 7.4 7.4 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.4 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.5 7.5 7.5 7.4 7.4 7.5 7.4 7.4 7.5 7.6 7.6 7.6 7.4 7.4 7.4 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.5 7.5 7.5 7.2 7.2 7.2 7.3 7.3
CTUnmapped 7.3 6.3 6.5 6.6 6.3 6.5 6.6 6.7 6.4 6.4 6.3 5.0 4.9 6.1 6.1 6.0 6.0 6.0 6.0 5.9 5.9 5.8 5.8 5.6 5.6 5.6 5.5 5.6 5.6 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.6 5.6 5.6 5.6 5.7 5.7 5.8 5.8 11.2 5.7 5.6 5.6 5.6 5.6 5.7 5.7 5.7 5.5 5.6 5.6 11.1 5.5 5.6 10.9 5.5 5.6 11.0 5.6 5.5 5.5 5.5 5.5 5.5 5.3 5.5 5.5 5.6 5.6
GAMAPQ >= 30 6.0 6.2 6.3 6.2 6.2 6.2 6.0 5.6 5.9 5.9 5.9 6.7 4.9 5.8 5.8 5.8 5.8 5.9 5.9 5.9 5.9 5.9 5.9 6.0 5.9 5.9 6.0 6.0 6.0 5.9 5.9 6.0 6.0 5.9 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.0 6.1 6.0 6.1 6.1 6.1 6.1 6.0 6.1 6.1 6.1 6.0 6.1 6.0 6.1 6.0 6.1 6.0 6.0 6.1 6.2 6.1 6.1 6.1
GAMAPQ >= 20 6.2 6.4 6.3 6.4 6.3 6.4 6.2 5.7 6.2 6.1 6.0 7.0 4.9 5.9 5.8 5.9 5.9 5.9 6.0 5.9 5.9 6.2 6.2 6.3 6.2 6.0 6.3 6.2 6.3 6.2 6.2 6.3 6.3 6.2 6.4 6.2 6.2 6.3 6.3 6.5 6.4 6.2 6.3 6.2 6.3 6.3 6.2 6.4 6.5 6.4 6.2 6.3 6.2 6.4 6.5 6.5 6.5 6.3 6.4 6.4 6.5 6.2 6.4 6.2 6.3 6.1 6.3 6.1 6.1 6.3 6.6 6.4 6.5 6.3
GAMAPQ >= 10 6.0 6.2 6.1 6.2 5.9 6.2 6.1 5.7 6.2 6.1 6.0 6.9 4.9 5.9 5.8 5.8 6.0 6.0 6.1 5.9 6.0 6.3 6.3 6.3 6.3 6.0 6.5 6.1 6.3 6.1 6.2 6.4 6.4 6.1 6.6 6.3 6.2 6.4 6.4 6.6 6.6 6.0 6.3 6.2 6.4 6.4 6.4 6.5 6.6 6.5 6.3 6.5 6.3 6.6 6.7 6.7 6.7 6.4 6.7 6.5 6.6 6.4 6.6 6.2 6.5 6.2 6.5 6.1 6.1 6.4 6.7 6.6 6.7 6.3
GAMAPQ >= 3 5.7 5.7 5.6 5.6 5.2 5.6 5.7 5.4 5.9 5.8 5.7 6.6 4.6 5.7 5.8 6.1 6.2 6.1 6.2 6.3 6.4 6.7 6.8 6.7 6.7 6.2 6.7 6.3 6.5 6.4 6.4 6.8 6.7 6.2 6.6 6.3 6.3 6.5 6.4 6.6 6.4 5.7 6.1 5.9 6.2 6.3 6.4 6.6 6.7 6.3 6.2 6.2 6.3 6.6 6.9 6.6 6.9 6.4 6.7 6.4 6.6 6.5 6.8 6.4 6.5 6.0 6.3 5.9 6.2 6.7 7.0 7.0 6.9 6.4
GAMAPQ < 3 6.3 6.4 6.4 6.4 6.3 6.4 6.3 5.8 6.2 6.2 6.1 6.4 5.2 6.1 6.1 6.1 6.2 6.2 6.2 6.2 6.2 6.4 6.4 6.5 6.4 6.2 6.5 6.3 6.4 6.3 6.3 6.4 6.4 6.3 6.5 6.3 6.4 6.4 6.4 6.6 6.5 6.3 6.4 6.3 6.4 6.4 6.4 6.4 6.5 6.5 6.4 6.4 6.4 6.5 6.6 6.5 6.6 6.4 6.5 6.4 6.6 6.4 6.5 6.4 6.4 6.3 6.5 6.3 6.3 6.5 6.6 6.5 6.5 6.3
GAUnmapped 11.9 6.2 5.9 6.0 6.1 11.6 5.8 5.3 11.1 5.9 5.7 4.6 4.4 5.6 5.6 5.6 5.5 5.4 5.5 5.6 5.6 5.6 10.9 5.7 5.8 5.8 6.0 5.8 5.9 11.6 6.0 11.4 5.7 5.9 5.9 5.8 5.8 5.5 5.6 5.8 5.8 5.7 5.5 5.6 5.6 5.6 5.4 5.4 5.5 5.7 5.7 5.7 5.4 5.6 5.8 5.8 5.7 5.5 5.6 5.8 5.9 5.8 5.6 5.8 5.9 11.3 5.9 5.7 5.8 6.0 6.1 5.8 5.7 5.9
GCMAPQ >= 30 5.0 4.9 5.1 4.9 5.2 5.1 5.3 5.1 5.2 5.3 5.4 4.5 4.6 5.4 5.4 5.4 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.4 5.5 5.5 5.5 5.5 5.6 5.6 5.6 5.5 5.5 5.5 5.5 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.7 5.6 5.7 5.6 5.6 5.6 5.7 5.6 5.6 5.7 5.6 5.7 5.7 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.6 5.7 5.6 5.6 5.6
GCMAPQ >= 20 5.5 5.4 5.6 5.4 5.7 5.5 6.0 5.5 5.6 5.7 5.9 4.8 4.9 5.9 6.0 5.9 6.0 6.0 6.0 6.0 6.1 6.0 6.0 6.1 5.9 6.1 5.9 6.0 6.0 6.1 6.2 6.3 5.9 6.0 6.0 5.9 6.0 6.2 6.0 6.1 6.0 6.1 6.0 6.1 6.0 6.1 6.0 6.1 6.0 6.1 6.0 6.2 5.9 5.9 6.1 6.1 6.0 5.9 6.1 6.0 6.1 5.9 6.0 5.8 5.9 5.9 5.9 6.0 5.9 6.0 6.1 5.9 5.9 5.9
GCMAPQ >= 10 6.1 5.9 6.1 5.8 6.2 5.9 6.4 5.8 5.9 6.1 6.3 5.4 5.3 6.3 6.4 6.2 6.4 6.3 6.2 6.4 6.5 6.4 6.4 6.4 6.1 6.5 6.2 6.4 6.6 6.6 6.9 6.8 6.4 6.5 6.3 6.4 6.5 6.6 6.5 6.4 6.4 6.7 6.5 6.8 6.5 6.7 6.5 6.5 6.4 6.4 6.2 6.6 6.3 6.1 6.5 6.4 6.4 6.4 6.4 6.3 6.5 6.5 6.5 6.2 6.3 6.2 6.5 6.6 6.3 6.5 6.7 6.4 6.4 6.4
GCMAPQ >= 3 6.2 5.6 6.0 5.5 6.1 5.8 6.6 5.9 5.7 5.9 6.0 5.1 4.9 5.9 5.9 5.9 5.8 5.8 5.9 5.9 6.1 6.1 6.1 6.2 5.8 6.0 5.7 5.8 5.9 6.1 6.3 6.2 5.8 6.1 6.1 6.1 6.2 6.4 6.2 6.3 6.1 6.3 6.0 6.3 6.0 6.1 5.8 5.9 5.8 6.2 5.9 6.1 5.8 5.8 6.1 6.0 6.0 5.8 5.9 6.0 6.2 6.1 6.1 5.8 6.2 6.1 6.6 6.5 6.5 6.5 6.5 6.3 6.4 6.2
GCMAPQ < 3 5.3 5.1 5.3 5.1 5.5 5.2 5.6 5.2 5.3 5.4 5.5 4.7 4.6 5.5 5.5 5.5 5.6 5.6 5.5 5.6 5.6 5.6 5.5 5.6 5.5 5.6 5.5 5.6 5.6 5.7 5.8 5.8 5.6 5.7 5.6 5.6 5.7 5.7 5.7 5.7 5.6 5.8 5.7 5.7 5.6 5.7 5.6 5.7 5.6 5.7 5.6 5.7 5.6 5.5 5.7 5.7 5.7 5.6 5.7 5.6 5.8 5.7 5.7 5.6 5.7 5.6 5.7 5.7 5.7 5.7 5.8 5.7 5.7 5.7
GCUnmapped 3.9 3.7 4.0 3.9 4.1 3.9 4.1 3.9 3.9 4.0 9.5 3.1 3.1 3.9 3.9 3.9 3.9 4.0 9.5 4.0 3.9 3.9 3.8 3.9 3.8 3.9 9.3 4.0 3.9 3.9 3.9 3.9 3.8 3.9 3.9 3.9 4.0 4.0 4.0 4.0 9.4 4.0 4.0 4.0 4.0 4.0 4.1 4.1 4.2 4.3 4.3 9.8 4.4 4.3 4.5 4.4 4.3 4.3 4.4 4.4 4.5 9.8 4.4 4.4 4.4 4.5 4.5 4.5 4.5 4.4 4.5 4.4 4.4 4.5
GGMAPQ >= 30 6.6 6.4 6.6 6.3 6.4 6.5 6.2 6.0 6.2 6.3 6.3 5.3 5.3 6.3 6.4 6.4 6.5 6.6 6.6 6.6 6.6 6.6 6.5 6.6 6.6 6.6 6.6 6.7 6.7 6.7 6.8 6.7 6.7 6.7 6.7 6.8 6.8 6.8 6.8 6.9 6.8 6.8 6.7 6.7 6.8 6.7 6.8 6.8 6.8 6.8 6.9 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.9 6.9 6.8 6.8 6.8 6.8 6.9 6.9 6.9 6.9 7.0 7.0 7.0 7.0 7.0
GGMAPQ >= 20 7.4 7.2 7.3 6.8 7.0 7.3 6.9 6.5 7.0 7.1 7.0 5.5 5.4 6.7 7.0 6.9 6.9 7.0 7.2 7.2 7.2 7.0 7.1 7.3 7.3 7.5 7.4 7.4 7.4 7.6 7.8 7.4 7.5 7.7 7.4 7.5 7.8 7.6 7.6 7.7 7.7 7.6 7.5 7.3 7.5 7.3 7.6 7.6 7.5 7.4 7.6 7.5 7.4 7.5 7.5 7.5 7.3 7.4 7.5 7.5 7.5 7.3 7.3 7.4 7.4 7.4 7.4 7.5 7.7 7.8 7.6 7.8 7.7 7.6
GGMAPQ >= 10 8.5 8.0 8.0 7.3 7.7 8.2 7.5 7.0 7.8 8.0 7.7 6.1 6.0 7.3 7.6 7.4 7.4 7.6 7.8 7.9 8.0 7.7 7.7 8.1 8.1 8.3 7.9 8.1 8.2 8.3 8.6 8.1 8.2 8.4 8.0 7.9 8.4 8.1 8.1 8.2 8.2 8.0 7.9 7.7 8.0 7.6 8.0 7.8 7.8 7.6 7.9 7.7 7.5 7.6 7.7 7.6 7.3 7.3 7.4 7.4 7.4 7.1 6.9 7.1 7.1 7.2 7.1 7.2 7.5 7.6 7.4 7.5 7.3 7.3
GGMAPQ >= 3 8.6 8.0 7.6 6.9 7.2 7.7 7.0 6.5 7.1 7.3 7.0 5.4 5.5 7.0 7.3 7.2 7.4 7.8 8.1 8.2 8.3 8.2 8.3 8.8 8.7 8.7 8.5 8.8 8.8 8.9 9.1 8.6 8.5 8.4 7.8 7.6 8.0 7.6 7.8 7.9 7.8 7.7 7.4 7.2 7.5 7.5 7.8 7.6 7.6 7.4 7.6 7.5 7.5 7.7 7.9 7.7 7.5 7.5 7.6 7.5 7.5 7.4 7.2 7.4 7.2 7.3 7.1 7.0 7.2 7.5 7.3 7.3 7.1 7.1
GGMAPQ < 3 7.4 7.0 7.0 6.6 6.8 7.0 6.5 6.2 6.7 6.8 6.6 5.5 5.5 6.6 6.7 6.7 6.8 6.9 7.0 7.0 7.1 6.9 7.0 7.2 7.1 7.2 7.1 7.2 7.2 7.3 7.4 7.2 7.3 7.3 7.1 7.1 7.3 7.1 7.2 7.2 7.2 7.1 7.0 6.9 7.0 6.9 7.1 7.0 7.0 7.0 7.1 7.0 6.9 7.0 7.0 7.0 6.9 6.9 7.0 7.0 7.0 6.8 6.8 6.9 6.8 6.9 6.8 6.8 7.0 7.0 7.0 7.0 7.0 7.0
GGUnmapped 5.4 4.9 5.1 5.0 10.6 5.1 4.7 4.6 4.9 5.0 4.9 3.8 8.6 4.9 5.0 5.0 4.9 5.0 5.2 5.2 5.2 10.6 5.3 5.5 5.6 5.7 5.8 6.0 6.2 6.5 6.7 6.8 7.1 7.3 7.3 7.4 7.3 7.4 7.5 13.1 7.6 7.4 7.2 7.2 7.3 7.3 7.2 7.4 7.2 7.4 7.6 7.6 7.8 8.2 8.5 8.7 8.8 9.2 9.5 9.7 9.8 9.7 10.0 10.2 10.4 10.6 10.4 10.6 10.7 10.6 10.5 10.2 10.3 10.2
GTMAPQ >= 30 5.8 4.9 5.1 5.3 5.3 5.2 5.5 5.3 5.2 5.2 5.2 4.4 4.3 5.1 5.2 5.2 5.2 5.3 5.2 5.3 5.3 5.3 5.2 5.2 5.2 5.2 5.2 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.2 5.2 5.3 5.3 5.2 5.3 5.2 5.3 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.3 5.2 5.2 5.2 5.1 5.2 5.2 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.1 5.2 5.2
GTMAPQ >= 20 6.1 5.2 5.4 5.6 5.5 5.4 5.7 5.6 5.5 5.5 5.5 4.5 4.4 5.4 5.4 5.4 5.5 5.4 5.3 5.4 5.5 5.4 5.3 5.3 5.5 5.4 5.4 5.4 5.4 5.4 5.5 5.4 5.4 5.4 5.4 5.3 5.3 5.4 5.2 5.3 5.3 5.4 5.2 5.2 5.1 5.1 5.1 5.2 5.1 5.3 5.1 5.2 5.2 5.1 5.3 5.2 5.1 4.9 5.0 4.9 5.0 4.9 4.9 4.9 4.9 4.9 4.9 4.9 5.0 5.0 5.2 5.0 5.1 5.0
GTMAPQ >= 10 6.2 5.4 5.4 5.9 5.6 5.4 5.8 5.7 5.6 5.7 5.6 4.9 4.6 5.6 5.4 5.5 5.6 5.5 5.3 5.5 5.5 5.5 5.4 5.4 5.6 5.5 5.5 5.3 5.3 5.2 5.4 5.3 5.4 5.3 5.4 5.2 5.3 5.4 5.2 5.2 5.4 5.3 5.3 5.2 5.0 5.1 5.0 5.2 5.0 5.2 5.0 5.1 5.1 5.1 5.1 5.0 5.0 4.8 4.7 4.7 4.7 4.8 4.7 4.9 4.8 4.8 4.8 4.9 5.0 5.0 5.0 4.8 5.0 4.9
GTMAPQ >= 3 6.3 5.6 5.6 5.8 5.5 5.4 5.7 5.6 5.6 5.6 5.5 4.7 4.4 5.6 5.4 5.5 5.5 5.3 5.2 5.4 5.2 5.4 5.2 5.3 5.6 5.4 5.4 5.3 5.3 5.3 5.4 5.3 5.5 5.3 5.3 5.2 5.1 5.3 5.2 5.3 5.4 5.4 5.5 5.3 5.2 5.3 5.2 5.3 5.1 5.2 5.0 5.0 5.2 5.1 5.2 5.1 5.1 4.7 4.7 4.7 4.7 5.0 4.8 5.0 5.1 4.9 4.8 5.0 4.8 5.0 5.0 4.9 5.1 4.7
GTMAPQ < 3 6.0 5.0 5.3 5.4 5.4 5.3 5.5 5.4 5.3 5.4 5.3 4.5 4.4 5.3 5.3 5.3 5.3 5.3 5.2 5.3 5.3 5.3 5.2 5.3 5.3 5.3 5.3 5.3 5.2 5.2 5.3 5.2 5.3 5.3 5.3 5.2 5.2 5.3 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.0 4.9 4.9 5.0 5.0 4.9 5.0 5.0 5.0 4.9 5.0 5.1 5.0 5.1 5.0 5.1 5.0
GTUnmapped 5.7 4.5 4.8 4.8 4.8 4.7 5.0 4.7 4.6 4.7 4.6 3.7 3.6 10.0 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.4 4.4 4.4 4.4 4.4 4.4 4.6 4.5 4.4 4.5 4.6 4.6 4.7 4.6 10.0 4.8 4.7 4.6 4.7 4.6 4.7 4.7 4.6 4.6 4.6 4.6 10.0 4.6 4.6 4.5 4.6 4.5 4.5 9.9 4.5 4.5 4.4 4.5 4.3 4.6 4.5 4.4 4.4 4.4 4.4 4.4 4.3 4.4 4.3 4.5 4.5 4.4 4.4
TAMAPQ >= 30 4.6 5.7 5.4 5.8 5.6 5.4 5.3 5.4 5.4 5.3 5.2 6.5 4.4 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.1 5.1 5.1 5.1 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.8 4.8 4.8 4.8 4.9 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.9 4.8 4.8 4.8 4.8
TAMAPQ >= 20 3.9 4.9 4.5 4.9 4.6 4.5 4.3 4.4 4.4 4.4 4.3 5.8 3.6 4.4 4.3 4.4 4.3 4.3 4.3 4.3 4.2 4.4 4.3 4.2 4.2 4.3 4.1 4.1 4.1 4.1 4.1 4.1 3.9 4.1 4.0 4.0 4.0 3.9 4.0 4.0 4.0 3.9 3.9 4.0 4.0 3.9 3.9 4.0 4.0 3.9 4.0 4.0 4.0 4.1 3.9 3.8 3.9 3.9 3.9 4.1 3.9 3.9 4.0 3.8 3.9 3.9 3.9 3.9 3.9 4.1 3.9 3.9 3.9 3.9
TAMAPQ >= 10 3.7 4.6 4.2 4.6 4.5 4.4 4.1 4.2 4.1 4.1 4.1 5.4 3.5 4.2 4.2 4.2 3.9 4.1 4.0 4.1 3.8 4.2 4.0 3.9 3.9 3.9 3.6 3.7 3.7 3.5 3.7 3.7 3.5 3.6 3.5 3.6 3.5 3.4 3.5 3.7 3.6 3.4 3.5 3.5 3.6 3.6 3.5 3.7 3.7 3.6 3.8 3.7 3.6 3.7 3.6 3.5 3.6 3.7 3.7 3.9 3.7 3.8 3.8 3.6 3.7 3.8 3.8 3.8 3.7 3.9 3.7 3.7 3.6 3.6
TAMAPQ >= 3 4.1 5.1 4.8 5.2 4.9 5.0 4.6 4.8 4.6 4.6 4.6 6.0 4.0 5.0 4.9 5.0 4.4 4.5 4.2 4.5 4.2 4.3 4.2 4.1 4.0 4.1 3.7 3.9 3.8 3.8 3.8 3.9 3.7 3.7 3.6 3.8 3.6 3.5 3.8 3.9 3.8 3.7 3.9 3.9 3.9 3.9 3.6 3.8 3.9 4.0 4.1 4.1 4.0 4.1 3.8 3.9 3.9 4.2 4.3 4.5 4.5 4.4 4.3 4.2 4.3 4.3 4.5 4.4 4.3 4.4 4.2 4.2 4.0 3.9
TAMAPQ < 3 4.0 5.0 4.7 5.1 4.9 4.8 4.6 4.7 4.6 4.6 4.5 5.2 3.8 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.4 4.6 4.5 4.4 4.4 4.4 4.3 4.3 4.3 4.2 4.3 4.3 4.2 4.2 4.2 4.3 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.3 4.2 4.3 4.3 4.2 4.3 4.2 4.2 4.2 4.2 4.3 4.4 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.4 4.2 4.2 4.2 4.2
TAUnmapped 4.2 5.5 4.9 5.3 5.1 4.8 4.7 4.7 4.7 4.6 4.5 3.6 3.5 4.4 4.4 4.3 4.3 4.2 4.2 4.2 4.1 4.2 4.1 4.1 4.1 4.1 4.2 4.0 4.1 4.0 4.0 4.0 3.9 3.9 3.9 3.8 3.8 9.2 3.8 3.8 3.7 3.7 3.7 3.7 3.6 3.7 3.6 3.7 9.1 3.7 3.7 3.7 3.7 3.7 3.7 3.7 3.7 3.6 3.6 3.8 3.6 3.7 3.7 3.7 3.7 3.7 3.7 3.7 3.7 3.7 3.6 3.6 3.7 3.7
TCMAPQ >= 30 4.1 6.0 5.8 5.7 6.1 5.8 6.1 6.2 6.2 6.1 6.2 5.1 5.2 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.0 6.0 6.0 6.1 6.1 6.1 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1
TCMAPQ >= 20 4.2 6.2 6.1 6.0 6.4 6.0 6.6 6.6 6.6 6.3 6.6 5.3 5.5 6.4 6.6 6.4 6.5 6.5 6.7 6.4 6.5 6.3 6.3 6.3 6.5 6.4 6.5 6.3 6.4 6.2 6.1 6.2 6.2 6.4 6.3 6.4 6.3 6.2 6.2 6.2 6.3 6.4 6.7 6.6 6.7 6.4 6.6 6.6 6.5 6.5 6.5 6.5 6.6 6.4 6.3 6.4 6.4 6.5 6.5 6.2 6.3 6.3 6.2 6.3 6.3 6.3 6.4 6.3 6.2 6.1 6.1 6.2 6.2 6.3
TCMAPQ >= 10 4.1 6.3 6.2 6.2 6.6 5.9 6.7 6.6 6.8 6.3 6.6 5.5 5.9 6.5 6.8 6.5 6.6 6.6 6.8 6.5 6.7 6.2 6.3 6.4 6.7 6.5 6.7 6.5 6.6 6.3 6.1 6.4 6.2 6.8 6.5 6.6 6.4 6.4 6.4 6.4 6.5 6.6 6.9 6.8 6.8 6.5 6.7 6.8 6.7 6.8 6.8 6.9 6.9 6.7 6.6 6.8 6.8 6.9 6.9 6.4 6.6 6.3 6.3 6.4 6.5 6.6 6.6 6.3 6.1 6.1 6.0 6.0 6.0 6.1
TCMAPQ >= 3 4.1 6.5 6.5 6.5 6.8 6.0 6.8 6.3 6.5 6.2 6.6 5.4 5.7 6.2 6.5 6.4 6.5 6.7 6.9 6.6 6.8 6.1 6.1 6.3 6.5 6.6 6.9 6.7 6.5 6.2 6.0 6.2 6.3 7.0 6.5 6.9 6.5 6.4 6.5 6.3 6.7 6.7 7.3 7.2 7.1 6.7 7.0 6.9 6.7 7.0 6.9 7.1 6.9 6.8 6.5 6.9 6.9 7.0 7.0 6.5 6.3 6.1 6.0 6.1 6.2 6.4 6.1 5.9 5.7 5.5 5.3 5.5 5.6 5.9
TCMAPQ < 3 4.3 6.4 6.3 6.3 6.5 6.2 6.7 6.7 6.7 6.4 6.5 5.5 5.6 6.5 6.6 6.5 6.5 6.5 6.6 6.5 6.6 6.3 6.4 6.4 6.5 6.5 6.6 6.5 6.5 6.4 6.3 6.4 6.4 6.6 6.5 6.5 6.4 6.5 6.4 6.4 6.4 6.5 6.6 6.6 6.6 6.5 6.7 6.6 6.5 6.6 6.6 6.7 6.7 6.6 6.5 6.6 6.6 6.6 6.7 6.4 6.5 6.4 6.4 6.4 6.4 6.5 6.4 6.3 6.3 6.2 6.1 6.3 6.3 6.3
TCUnmapped 4.4 6.3 11.8 6.3 6.4 6.1 6.3 6.6 6.5 6.2 6.1 4.8 4.9 6.0 5.8 11.2 5.8 5.9 5.8 5.8 5.5 5.5 5.7 5.7 5.6 5.5 5.4 5.6 5.6 5.5 5.3 5.5 5.6 5.7 5.7 5.6 5.6 5.9 5.8 5.7 5.6 5.7 6.0 11.5 6.0 11.2 5.9 6.0 5.9 5.8 5.7 5.7 5.8 5.7 5.6 10.8 5.5 5.8 11.1 5.5 5.4 5.5 5.7 5.6 5.5 5.4 5.5 5.7 5.6 5.5 5.4 5.6 6.0 6.0
TGMAPQ >= 30 5.7 7.5 7.3 7.8 7.6 7.6 7.2 7.8 7.8 7.6 7.5 6.4 6.4 7.6 7.6 7.8 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.8 7.7 7.8 7.8 7.8 7.8 7.7 7.7 7.8 7.8 7.7 7.8 7.8 7.7 7.8 7.7 7.7 7.7 7.7 7.7 7.7 7.8 7.8 7.7 7.8 7.7 7.7 7.8 7.7 7.7 7.7 7.7 7.7 7.8 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.8 7.6 7.7 7.7 7.6
TGMAPQ >= 20 6.0 7.8 7.6 8.1 8.0 7.9 7.5 8.2 8.1 7.7 7.7 6.3 6.6 8.0 7.7 8.0 8.0 7.9 7.9 7.9 7.8 8.0 7.9 7.8 7.8 7.8 7.9 7.9 7.9 8.1 8.0 7.9 7.9 7.9 7.9 7.9 7.9 8.0 8.1 7.9 7.9 7.7 7.9 7.9 7.8 7.8 7.7 7.8 7.6 7.5 7.8 7.6 7.7 7.9 7.7 7.7 7.6 7.8 7.7 7.7 7.2 7.6 7.5 7.5 7.5 7.5 7.5 7.5 7.7 7.7 7.4 7.5 7.5 7.5
TGMAPQ >= 10 6.0 7.9 7.8 8.1 8.2 8.0 7.5 8.5 8.3 7.6 7.6 6.5 6.9 8.1 7.6 8.2 8.1 7.9 8.0 8.0 7.7 8.1 8.0 7.8 7.8 7.7 7.9 7.9 7.9 8.1 8.0 8.1 7.9 8.0 8.0 8.1 8.0 8.1 8.3 8.1 7.9 7.9 8.1 8.1 7.9 8.0 7.8 7.9 7.6 7.4 7.8 7.6 7.8 8.0 7.7 7.8 7.6 7.8 7.6 7.6 7.3 7.7 7.6 7.7 7.6 7.7 7.6 7.5 7.8 7.8 7.5 7.4 7.5 7.5
TGMAPQ >= 3 5.9 7.6 7.5 7.7 7.9 7.9 7.2 7.9 7.7 7.1 6.9 5.9 6.4 7.6 7.2 7.5 7.4 7.2 7.3 7.5 7.2 7.6 7.5 7.5 7.4 7.4 7.7 7.6 7.7 8.0 7.6 7.6 7.3 7.6 7.7 7.9 7.8 8.1 8.3 8.1 7.9 8.0 8.1 8.0 8.0 7.8 7.6 7.6 7.3 7.1 7.3 7.3 7.5 7.8 7.3 7.3 7.1 7.3 7.2 7.4 7.2 7.6 7.7 7.7 7.6 8.0 7.7 7.7 8.3 8.0 7.8 7.6 7.5 7.7
TGMAPQ < 3 5.8 7.7 7.5 7.9 7.8 7.7 7.3 8.0 7.9 7.5 7.5 6.4 6.5 7.7 7.6 7.8 7.7 7.7 7.7 7.8 7.7 7.8 7.8 7.7 7.7 7.7 7.8 7.8 7.8 7.9 7.8 7.8 7.8 7.8 7.8 7.9 7.8 7.9 7.9 7.8 7.9 7.8 7.8 7.9 7.8 7.8 7.7 7.8 7.7 7.5 7.7 7.6 7.7 7.8 7.6 7.6 7.5 7.7 7.6 7.7 7.4 7.7 7.6 7.7 7.7 7.7 7.6 7.6 7.8 7.8 7.6 7.6 7.5 7.6
TGUnmapped 5.0 6.8 6.5 7.0 6.8 6.6 6.2 6.8 6.9 6.5 6.3 5.1 5.2 6.5 6.4 6.3 6.4 6.5 6.5 6.4 6.2 6.3 6.5 6.5 6.5 11.9 6.6 6.5 6.7 6.6 6.4 6.5 6.6 6.5 6.4 6.3 6.3 6.4 6.5 6.3 6.2 6.2 6.4 6.4 6.3 6.2 6.3 6.4 6.5 6.4 11.7 6.4 6.5 6.7 6.4 6.3 6.3 6.5 6.5 6.6 11.5 6.3 6.4 6.4 11.8 6.2 6.2 6.3 6.3 6.2 5.9 6.1 6.2 6.2
TTMAPQ >= 30 6.6 8.8 8.7 8.5 8.3 8.4 8.6 8.8 8.7 8.6 8.5 7.2 7.2 8.5 8.4 8.3 8.1 8.0 8.0 7.9 7.9 8.0 8.0 8.0 8.1 8.0 8.0 7.9 7.9 7.8 7.8 7.8 7.8 7.9 7.9 7.8 7.8 7.8 7.8 7.7 7.7 7.7 7.8 7.8 7.8 7.8 7.8 7.8 7.7 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.8 7.8 7.7 7.6 7.6 7.7 7.7 7.7 7.8 7.8 7.8 7.8 7.7 7.6 7.6 7.7 7.7 7.8
TTMAPQ >= 20 6.6 8.6 8.5 8.3 8.1 8.1 8.3 8.3 8.1 8.0 7.9 6.7 6.8 8.0 7.9 7.7 7.7 7.6 7.5 7.3 7.3 7.2 7.3 7.2 7.2 7.2 7.1 7.1 7.1 7.0 6.9 6.9 7.0 7.1 7.1 7.1 7.0 7.1 7.0 6.9 6.9 7.1 7.2 7.1 7.0 7.0 7.0 6.9 6.8 6.8 7.0 7.0 7.1 7.0 6.9 7.2 7.3 7.3 7.2 7.0 7.2 7.4 7.4 7.5 7.6 7.5 7.5 7.3 7.2 7.0 6.8 6.9 6.9 7.0
TTMAPQ >= 10 6.7 8.6 8.5 8.3 8.0 7.9 8.1 7.8 7.7 7.6 7.5 6.5 6.5 7.5 7.4 7.1 7.1 7.0 6.9 6.6 6.7 6.4 6.5 6.5 6.4 6.4 6.4 6.4 6.3 6.2 6.2 6.1 6.2 6.3 6.4 6.3 6.2 6.2 6.1 5.9 5.8 6.0 6.1 5.9 6.0 5.8 5.9 5.7 5.6 5.6 5.8 5.9 5.9 5.9 5.8 6.0 5.9 5.9 5.8 5.7 5.9 5.9 6.0 6.1 6.2 6.0 5.9 5.9 6.0 5.9 5.9 5.9 6.0 6.3
TTMAPQ >= 3 6.9 8.8 9.0 9.1 8.8 8.6 8.6 8.4 8.2 8.2 8.3 7.1 7.1 8.1 7.9 7.7 7.7 7.6 7.5 7.0 7.0 6.8 6.8 6.6 6.7 7.0 7.1 6.9 6.7 6.3 6.3 6.2 6.4 6.6 6.8 6.4 6.4 6.4 6.3 6.2 6.3 6.6 6.6 6.4 6.1 5.8 5.8 5.6 5.5 5.6 5.7 5.7 5.8 5.8 5.8 6.0 6.1 6.2 6.1 6.0 6.0 6.1 6.3 6.4 6.6 6.5 6.4 6.1 6.1 5.9 5.9 6.0 6.1 6.3
TTMAPQ < 3 6.6 8.8 8.7 8.5 8.3 8.3 8.5 8.6 8.4 8.3 8.2 7.0 7.0 8.1 8.0 7.9 7.9 7.7 7.6 7.5 7.5 7.4 7.5 7.5 7.4 7.5 7.4 7.4 7.3 7.2 7.2 7.2 7.2 7.3 7.4 7.3 7.2 7.2 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.1 7.1 6.9 6.9 7.0 7.0 7.1 7.0 7.0 7.1 7.2 7.2 7.1 7.0 7.0 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.0 7.0 7.1 7.1 7.3
TTUnmapped 6.6 9.3 9.3 9.3 9.4 9.8 10.7 11.3 11.4 11.5 11.9 10.2 10.5 13.0 18.6 13.4 13.8 13.9 14.0 14.0 14.3 14.6 14.6 14.5 14.1 13.8 13.7 13.4 13.1 12.7 12.5 12.5 12.4 12.4 12.2 12.1 17.6 12.2 12.0 11.8 11.9 12.3 12.2 12.1 12.0 11.9 12.0 11.7 11.1 10.8 10.7 10.7 10.5 10.1 9.7 9.7 9.9 15.1 9.4 9.0 8.9 9.1 9.0 14.2 8.6 8.5 8.7 8.5 8.4 8.0 8.1 8.5 8.5 8.5
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.

Error Distribution

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3

Nucleotide Composition MAPQ >= 30

A C G T N

Nucleotide Composition MAPQ >= 20

A C G T N

Nucleotide Composition MAPQ >= 10

A C G T N

Nucleotide Composition MAPQ >= 3

A C G T N

Nucleotide Composition MAPQ < 3

A C G T N

Nucleotide Composition Unmapped

A C G T N

Length Distribution MAPQ >= 30

Length Distribution MAPQ >= 20

Length Distribution MAPQ >= 10

Length Distribution MAPQ >= 3

Length Distribution MAPQ < 3

Length Distribution Unmapped

Top 5 over-represented 2-mers MAPQ >= 30

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
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AA

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TG

TT

AA

AG

AG

TG

CA

AA

TT

TT

CA

TG

AA

CT

TT

TG

CA

CT

AA

TT

TG

CA

CT

AA

TG

TT

CA

CT

AA

TG

CA

AG

CT

TT

CT

CA

TT

AG

TG

CA

CT

TG

TT

AA

CT

CA

TT

TG

AA

CT

TT

CA

TG

AA

TT

CT

CA

TG

AA

TT

CT

CA

TG

AA

TT

CT

CA

TG

AA

TT

CT

CA

TG

AG

TT

CT

TG

CA

AG

TG

CA

AG

TT

CT

AG

CA

TG

TT

CT

CA

TT

TG

AG

CT

CA

TT

CT

TG

AG

TT

CA

TG

AG

AA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 20

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AG

AA

CA

CT

GG

TT

AA

AG

TG

GG

TT

TG

AA

AG

CT

TT

TG

AG

CA

CT

TT

TG

AA

AG

CA

TT

TG

CA

AA

GG

TT

TG

CT

AA

AG

TT

TG

CA

CT

AA

TT

TG

CA

AA

CT

TT

CA

TG

AA

CT

TT

TG

CA

AA

AG

CA

AA

GA

TT

CT

AA

AG

AT

TT

TG

TT

TG

CA

CT

AG

TT

CT

CA

TG

AG

TG

TT

CT

CA

AG

TG

CA

TT

CT

AG

TG

CT

CA

TT

AG

TG

CT

CA

TT

AG

TG

CA

CT

AG

TT

TG

CT

CA

AG

TT

TG

CA

CT

AG

TT

TG

AG

CA

CT

TT

CA

TG

CT

AG

GG

TG

AG

CA

CT

GG

TG

CA

AG

CT

GG

TG

CA

CT

AG

GG

TG

CA

AG

CT

GG

TG

CA

AG

CT

GG

TG

CA

AG

GG

CT

TG

CA

GG

AG

CT

CA

TG

AG

GG

CT

TG

CA

AG

CT

GG

TG

GG

CA

CT

AG

TG

CA

CT

AG

GG

TG

CA

AG

GG

CT

TG

GG

CA

AG

CT

TG

CA

GG

CT

AG

TG

CA

GG

AG

CT

TG

CA

GG

AG

CT

TG

GG

CT

CA

AG

CT

TG

CA

GG

AG

TG

CT

CA

GG

AG

TG

CT

CA

AG

GG

CA

TG

CT

GG

AG

CA

TG

CT

AG

GG

CT

TG

CA

GG

AG

TG

CA

CT

GG

AG

CA

AG

TG

CT

GG

CT

AG

CA

TG

GG

CA

TG

CT

AG

GG

CT

CA

TG

GG

AG

CT

CA

TG

AG

GG

TG

CA

AG

GG

CT

AG

TG

CA

GG

CT

TG

CA

CT

AG

GG

CT

TG

CA

AA

AG

TG

CT

CA

AG

GG

TG

CA

CT

GG

AA

CA

TG

CT

GG

AG

CT

CA

GG

AA

AG

CA

CT

TG

AA

CC

CT

CA

AA

CC

TG

CA

AA

CT

CC

TG

AA

CT

TT

CC

CA

CT

CC

AA

CA

TG

CC

CT

CA

AA

TG

CC

CA

CT

AA

AG

CC

TG

GG

CT

CA

GG

CA

TG

AG

AA

AG

GG

CA

AA

CC

GG

AG

CC

CA

AA

GG

CC

CA

AA

AG

CC

CA

GG

AG

AA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 10

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AG

GG

CA

CT

AA

TT

GG

TG

AG

CT

TT

GG

TG

CT

CA

TT

TG

CA

AG

CT

TG

TT

GG

AG

CA

GG

TG

TT

CT

CA

TT

GG

CT

TG

AG

TG

TT

CT

CA

AG

TG

GG

TT

CA

AG

GG

CA

TG

AG

TT

GG

TG

TT

AG

CA

CA

AA

GA

CT

TT

AG

AA

TG

CT

AT

TG

CA

CT

TT

AG

CT

TG

GG

CA

TT

TG

CT

CA

GG

AG

TG

CA

CT

GG

AG

TG

CT

AG

CA

CC

TG

CT

GG

CA

CC

TG

GG

CA

CT

AG

GG

CT

TG

AG

CA

TG

CT

CA

CC

GG

AG

TG

GG

CC

CA

GG

CA

TG

AG

CT

GG

AG

TG

CA

CC

GG

TG

AG

CC

CA

TG

GG

CC

CA

AG

GG

CA

TG

AG

CC

GG

CA

TG

AG

CC

GG

TG

CA

AG

CC

GG

CA

TG

CC

CT

CA

TG

GG

AG

CC

GG

CT

TG

CA

AG

GG

TG

CT

CC

CA

CA

TG

GG

CT

CC

TG

CA

GG

AG

CC

GG

TG

CA

CC

CT

TG

GG

CA

CT

CC

TG

GG

CA

CT

CC

GG

TG

CA

AG

CC

GG

TG

CC

CT

CA

CT

GG

TG

CC

CA

TG

CT

GG

CA

CC

TG

CT

CC

GG

CA

CC

GG

TG

CA

CT

CC

TG

CT

CA

AG

CT

GG

CC

TG

CA

CA

TG

GG

CC

CT

CA

CC

GG

AG

CT

CT

CC

AG

GG

CA

CT

GG

CC

TG

CA

CT

GG

CA

TG

CC

CT

CA

TG

CC

GG

TG

CA

CC

GG

AG

CT

AG

GG

TG

CC

CA

TG

CT

CC

GG

CT

CC

CA

TG

AG

CT

TG

CA

CC

AG

CC

CT

CA

TG

GG

CC

CT

CA

TG

AG

CT

CC

CA

AG

GG

CT

CC

CA

TG

AG

CC

CT

CA

TG

AG

CC

CT

CA

TG

AG

CC

CT

TG

CA

AG

CC

CT

TG

CA

AG

CC

CT

CA

TG

AG

CC

CT

CA

AG

TG

CC

CT

TG

AG

CA

CC

TG

CA

GG

AG

CC

CA

AG

TG

GG

CC

AG

CA

GG

TG

CC

CA

AG

TG

AA

CC

AG

CA

AA

TG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

AG

CA

CT

AA

TT

GG

TG

AA

CT

TT

GG

TG

CA

CT

TT

TG

CA

CT

AG

TT

TG

CA

GG

AG

TT

TG

GG

CA

CT

TT

TG

CA

GG

CT

TT

CA

TG

CT

CC

TT

TG

CA

AG

GG

TT

CA

AG

GG

CC

TT

CA

AG

CC

CT

CA

AA

TT

GA

CT

AG

AA

TT

AT

CT

TT

TG

CA

AG

CT

TT

CT

AG

CA

GG

TT

TG

AG

CT

GG

TT

AG

GG

CC

TG

AG

GG

CT

TT

CC

GG

CT

AG

CC

TT

GG

AG

CC

CT

TG

GG

AG

CT

CC

TG

GG

AG

TG

CA

CC

AG

GG

TG

CT

CC

GG

AG

TG

CA

CT

GG

AG

TG

CT

CA

GG

AG

CT

CC

TG

GG

TG

CT

CA

CC

GG

CA

TG

CC

AG

GG

CA

TG

AG

CC

GG

TG

CA

AG

CC

GG

CA

TG

AG

CC

GG

CA

TG

AG

CC

GG

CA

AG

TG

CC

GG

CC

TG

CA

AG

CA

GG

CC

TG

CT

TG

CA

GG

CC

AG

GG

CA

TG

CC

CT

TG

CA

GG

CC

CT

TG

GG

CC

CA

CT

TG

GG

CA

CC

CT

TG

CC

GG

CT

CA

CC

CT

TG

GG

CA

CC

TG

CT

CA

GG

CC

CT

TG

CA

TC

CC

TG

CA

CT

GG

CC

TG

CA

CT

GG

CC

GG

CT

TG

CA

CC

CA

GG

TG

CT

CC

CT

GG

AG

CA

CC

CT

AG

GG

CA

CC

CT

GG

CA

TG

CC

CT

GG

CA

TG

CT

CC

TG

GG

CA

CC

TG

GG

AG

CT

GG

CT

CC

AG

AA

GG

AG

CT

CC

TG

CT

CC

GG

AA

AG

CT

CC

GG

AG

TG

CT

CC

GG

TG

CA

CT

CC

GG

TG

CA

CT

GG

AG

CA

CC

CT

TG

AA

CA

CC

CT

AA

TG

CC

AG

TG

AA

CT

CC

GG

CT

AA

TG

CC

GG

TG

CT

CC

AA

AG

CC

TG

CT

CA

AA

CC

CT

TG

AA

CA

TG

CC

AA

CT

AG

TG

AA

CA

CC

GG

TG

AA

AG

CC

CA

CC

AG

AA

TG

CA

CC

AA

TG

CA

AG

CC

AA

TG

CA

GG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ < 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AA

AG

CA

CT

GG

TT

AA

AG

TG

GG

TT

AA

TG

CA

AG

TT

TG

CA

AA

AG

TT

TG

AA

AG

CA

TT

TG

AA

CA

CT

TT

AA

TG

CT

CA

TT

TG

CA

AA

CT

TT

TG

CA

AA

AG

TT

CA

AA

TG

AG

TT

AA

CA

TG

AG

AA

CA

TT

GA

TG

AA

AG

TT

TG

AT

TT

TG

CA

AA

CT

TT

CA

TG

CT

AA

TT

TG

CA

CT

AA

TT

TG

CA

AG

CT

TG

TT

CA

CT

AG

TG

TT

CA

CT

AG

TG

CA

TT

CT

AG

TG

CA

TT

CT

AG

TG

CA

TT

CT

AG

TG

AG

CA

TT

CT

TG

CA

TT

AG

CT

TG

CA

AG

TT

CT

TG

CA

TT

AG

CT

TG

CA

TT

CT

AG

CA

TG

AG

TT

CT

CA

TG

AG

TT

CT

TG

CA

AG

GG

CT

CA

TG

GG

AG

CT

CA

TG

AG

CT

TT

CA

TG

CT

AG

GG

TG

CA

AG

CT

TT

CA

TG

CT

TT

AG

TG

CA

AG

TT

CT

TG

CA

CT

AG

AA

TG

CA

CT

AG

AA

TG

CA

CT

AG

AA

TG

CA

AG

CT

AA

TG

CA

CT

AG

AA

TG

CA

CT

AG

AA

TG

CA

CT

TT

AG

TG

CA

CT

AG

TT

TG

CA

CT

AA

AG

TG

CA

CT

AG

AA

TG

CA

CT

AG

AA

CA

TG

CT

AA

AG

CA

TG

AG

CT

AA

CA

CT

TG

AG

AA

CA

TG

CT

AG

AA

CA

CT

TG

AA

AG

CA

TG

CT

AA

AG

TG

CA

AA

AG

CT

CA

TG

AA

CT

AG

TG

CA

AA

CT

AG

CA

AA

CT

TG

AG

TG

CA

CT

AA

AG

CA

TG

CT

AA

AG

CA

TG

CT

AA

AG

CT

CA

AA

TG

AG

CA

TG

AA

CT

AG

AA

TG

CA

CT

AG

AA

TG

CA

CT

AG

AA

TG

CA

CT

TT

AA

TG

CA

CT

AG

AA

CA

TG

CT

AG

AA

CA

TG

CT

AG

TG

AA

CA

CT

AG

TG

AA

CA

AG

CT

AA

TG

CA

AG

CT

AA

CA

TG

AG

CC

AA

CA

TG

AG

CC

AA

CA

TG

CC

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers Unmapped

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GA

AA

AT

CA

CT

AT

AA

TT

TG

AG

TC

TT

AA

AT

CA

CG

TT

AA

TG

AT

GG

TT

AA

AT

TG

GA

TT

AA

CA

AT

AA

TT

AT

CT

CA

AG

TT

AA

AT

TG

TT

GA

AA

TG

CA

TT

AG

AA

CA

TG

TT

AA

GC

CA

AT

CG

TT

AA

CA

AT

TT

GG

AA

AT

TG

TT

GT

AA

TG

CA

TT

AA

CA

TG

CT

TT

TC

AA

CA

AT

TT

CA

AA

TG

AT

TT

AG

AA

TG

CA

TT

AA

GC

TG

CA

TT

CA

AA

TG

CT

TT

AG

AA

CA

TG

TT

GG

AA

TG

CA

TT

GA

AA

TG

CA

AA

TT

TG

CA

AT

TT

AT

AA

TG

CA

TT

TG

AA

CA

AT

TT

AA

GC

TG

CA

TT

CC

AA

TG

CA

CG

TT

AA

TG

GG

TT

GA

AA

TG

GG

TT

AG

AA

GG

TG

TT

GA

AA

GG

TG

TT

AC

AA

GG

TG

TT

CC

AA

GG

TG

CG

TT

AA

GG

TG

TT

GT

AA

GG

TG

TT

AA

GG

TG

CA

TT

AA

TA

GG

TG

TT

AG

AA

GG

TG

GG

TT

AA

TG

CA

TT

GC

AA

GG

TG

TT

CA

AA

GG

TG

TT

AT

AA

GG

TG

TT

TC

AA

GG

TG

TT

CT

AA

GG

CC

TT

TC

AA

GG

CC

CG

TT

AA

GG

CC

TT

GT

AA

GG

CC

TT

TA

AA

GG

CC

TT

AT

AA

GG

CC

TG

TT

AA

GG

CC

TT

GC

AA

GG

CC

CC

TT

AA

GG

TG

CG

TT

GG

AA

CC

GT

TT

GG

AA

CC

TC

TT

GG

AA

CC

CT

TT

GG

AA

CC

TT

GG

AA

CC

TG

TC

GG

TT

AA

CC

CT

GG

TT

AA

CC

TG

GG

TT

AA

CC

GC

GG

TT

AA

CC

CT

GG

TT

AA

CC

TT

GG

AA

CC

TG

TG

GG

TT

AA

CC

GA

GG

TT

AA

CC

AA

GG

TT

CC

CA

AA

GG

TT

CC

TG

AA

GG

TT

CC

TG

AA

GG

TT

CC

CA

AA

GG

TT

CC

CA

AA

GG

TT

CC

CA

AA

GG

TT

CC

CA

AA

GG

TT

CC

CA

 
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 20 over-represented 10-mers

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3 Unmapped
SeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-value
GCCTGTAATC 1096576 0.0e+00 TTTTTTTTTT 228676 0.0e+00 GGAGGCTGAG 100162 0.0e+00 CTCCTGACCT 24132 0.0e+00 GGAGGCTGAG 174282 0.0e+00 TTTTTTTTTT 3490708 0.0e+00
GGATTACAGG 1044248 0.0e+00 AAAAAAAAAA 197609 0.0e+00 GAGGCTGAGG 98956 0.0e+00 TCCTGACCTC 21469 0.0e+00 GAGGCTGAGG 173109 0.0e+00 AAAAAAAAAA 1615303 0.0e+00
CCAGGCTGGA 1037095 0.0e+00 GGAGGCTGAG 105098 0.0e+00 AGGCTGAGGC 92944 0.0e+00 GAGGCTGAGG 21006 0.0e+00 CTCCTGACCT 161079 0.0e+00 ATTCCATTCC 313832 0.0e+00
ATCCCAGCAC 917819 0.0e+00 GAGGCTGAGG 104004 0.0e+00 CTCAGCCTCC 87256 0.0e+00 GGAGGCTGAG 21005 0.0e+00 AGGCTGAGGC 160260 0.0e+00 GGGGGGGGGG 313609 0.0e+00
CAGCACTTTG 909673 0.0e+00 TAATCCCAGC 96661 0.0e+00 GGCTGAGGCA 87197 0.0e+00 AGGCTGAGGC 20012 0.0e+00 CTCAGCCTCC 150475 0.0e+00 TTCCATTCCA 312345 0.0e+00
GTGCAGTGGC 674129 0.0e+00 AGGCTGAGGC 95064 0.0e+00 CCTCAGCCTC 86578 0.0e+00 CCTCAGCCTC 18979 0.0e+00 CCTCAGCCTC 149745 0.0e+00 CCATTCCATT 306795 0.0e+00
TCACTGCAAC 658178 0.0e+00 TGTAATCCCA 93890 0.0e+00 GCTGAGGCAG 85647 0.0e+00 CTCAGCCTCC 18830 0.0e+00 GGCTGAGGCA 149094 0.0e+00 TCCATTCCAT 305183 0.0e+00
TGCCCAGGCT 646052 0.0e+00 GTAATCCCAG 91710 0.0e+00 CTCCTGACCT 84162 0.0e+00 GGCTGAGGCA 18520 0.0e+00 GCTGAGGCAG 146818 0.0e+00 CATTCCATTC 298396 0.0e+00
CCAGCCTGGG 645457 0.0e+00 CTGTAATCCC 90959 0.0e+00 TCCCAGCTAC 83547 0.0e+00 GCTGAGGCAG 18343 0.0e+00 TCCCAGCTAC 143972 0.0e+00 GGAATGGAAT 284869 0.0e+00
TTGCCCAGGC 631181 0.0e+00 CCTGTAATCC 89932 0.0e+00 CTGAGGCAGG 83141 0.0e+00 CTGAGGCAGG 18203 0.0e+00 CTGAGGCAGG 143495 0.0e+00 TGGAATGGAA 284185 0.0e+00
TGTTGCCCAG 620569 0.0e+00 CTCAGCCTCC 86972 0.0e+00 CCCAGCTACT 83084 0.0e+00 TTTTAGTAGA 18115 0.0e+00 TCCTGACCTC 143036 0.0e+00 AATGGAATGG 280717 0.0e+00
TGCCTGTAAT 597419 0.0e+00 CCTCAGCCTC 85906 0.0e+00 TAATCCCAGC 81781 0.0e+00 TTTAGTAGAG 18047 0.0e+00 CCCAGCTACT 142564 0.0e+00 ATGGAATGGA 279692 0.0e+00
TTTTTTGAGA 533425 0.0e+00 GGCTGAGGCA 85382 0.0e+00 GCCTCAGCCT 80560 0.0e+00 AGGTCAGGAG 17957 0.0e+00 GCCTCAGCCT 138687 0.0e+00 GAATGGAATG 272342 0.0e+00
TCCAGCCTGG 525080 0.0e+00 TCCCAGCTAC 85144 0.0e+00 TGTAATCCCA 78651 0.0e+00 GCCTCAGCCT 17890 0.0e+00 TAATCCCAGC 138366 0.0e+00 TTTTTTTTTG 235622 0.0e+00
CGCCTGTAAT 524125 0.0e+00 CCCAGCTACT 84056 0.0e+00 GTAATCCCAG 78480 0.0e+00 TTAGTAGAGA 17716 0.0e+00 TTTTAGTAGA 135454 0.0e+00 CTTTTTTTTT 233340 0.0e+00
CAGCCTGGGC 473570 0.0e+00 GCTGAGGCAG 82077 0.0e+00 TGAGGCAGGA 77090 0.0e+00 TTTTTAGTAG 17665 0.0e+00 TTTAGTAGAG 134563 0.0e+00 CCCCCCCCCC 200881 0.0e+00
ACCTGTAATC 464296 0.0e+00 GGGAGGCTGA 78616 0.0e+00 TTTTAGTAGA 76738 0.0e+00 TCCCAGCTAC 17507 0.0e+00 GGGAGGCTGA 134524 0.0e+00 GATCGGAAGA 192438 0.0e+00
CACGCCTGTA 464250 0.0e+00 CTGAGGCAGG 78437 0.0e+00 GAGGCAGGAG 76113 0.0e+00 CCCAGCTACT 17359 0.0e+00 TGTAATCCCA 133716 0.0e+00 ATCGGAAGAG 191192 0.0e+00
GGCATGGTGG 461738 0.0e+00 GCTCACTGCA 78254 0.0e+00 CTGTAATCCC 76073 0.0e+00 ATTTTTAGTA 17275 0.0e+00 TGAGGCAGGA 133465 0.0e+00 TCGGAAGAGC 188808 0.0e+00
GTGGCTCACG 445116 0.0e+00 GCCTCAGCCT 77374 0.0e+00 AGGCAGGAGA 75989 0.0e+00 TGAGGCAGGA 17003 0.0e+00 TTAGTAGAGA 133372 0.0e+00 GTTCAGCAGG 181939 0.0e+00