gfp_input

Mapping stats: 93% aligned (45.9M aligned out of 49.2M total) 

Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.

Mean Base Quality

Mean base quality of reads with low and high mapping quality.

Error Profile MAPQ >= 30

Mismatches Insertions Deletions

Error Profile MAPQ >= 20

Mismatches Insertions Deletions

Error Profile MAPQ >= 10

Mismatches Insertions Deletions

Error Profile MAPQ >= 3

Mismatches Insertions Deletions

Error Profile MAPQ < 3

Mismatches Insertions Deletions

Nucleotide Over-representation along read

Mer Q 1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
AAMAPQ >= 30 14.3 11.7 12.1 11.1 12.0 12.3 12.1 10.5 10.1 10.7 10.8 11.6 11.6 10.8 10.7 10.6 10.5 10.4 10.3 10.3 10.3 10.3 10.3 10.3 10.4 10.3 10.3 10.2 10.2 10.2 10.2 10.2 10.2 10.2 10.2 10.2 10.2 10.2 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.1 10.0 10.1 10.1 10.1
AAMAPQ >= 20 14.9 11.6 11.5 10.2 11.6 12.1 11.5 10.1 9.4 10.3 10.9 11.4 11.2 10.1 10.5 10.6 9.9 9.8 9.6 9.7 9.9 9.8 9.8 9.8 10.2 10.1 9.8 9.8 9.7 9.7 9.9 9.4 9.6 9.8 9.7 9.7 9.8 9.8 9.7 9.8 9.7 9.7 9.4 9.6 9.5 9.8 9.7 9.6 9.8 9.7 9.5 9.8 9.5 9.7 9.8 9.8 9.9 9.7 9.8 10.0 9.9 10.3 10.0 10.1 10.3 10.1 10.3 10.1 10.1 10.0 9.6 9.6 9.4 9.3
AAMAPQ >= 10 12.5 10.3 10.0 8.6 10.3 10.7 10.1 8.8 8.3 9.2 9.7 10.2 9.7 8.5 8.9 9.4 8.6 8.5 8.2 8.5 8.6 8.4 8.5 8.5 9.0 8.7 8.4 8.5 8.4 8.3 8.4 8.2 8.4 8.7 8.3 8.5 8.8 8.6 8.8 8.8 8.7 8.7 8.3 8.4 8.1 8.8 8.7 8.3 8.6 8.8 8.5 8.8 8.4 8.6 8.5 8.7 8.9 8.7 8.8 9.0 9.0 9.5 9.0 9.0 9.1 9.2 9.4 9.2 9.0 9.2 9.0 9.3 9.3 9.2
AAMAPQ >= 3 11.7 9.8 9.6 8.5 9.8 10.0 9.9 8.7 8.9 9.2 9.6 10.8 9.9 8.8 8.7 9.2 8.6 8.5 8.1 8.4 8.3 8.7 8.3 8.2 8.6 8.1 8.4 8.4 8.3 8.6 8.7 8.7 8.9 9.2 8.8 8.8 9.3 8.8 8.6 8.5 8.3 8.8 8.2 8.2 8.2 9.3 8.8 8.9 8.4 9.0 8.8 9.1 8.8 8.3 8.5 8.8 8.7 8.5 8.7 8.9 9.0 9.7 9.0 8.9 8.8 9.0 9.2 9.3 9.1 9.3 8.8 9.3 9.4 9.2
AAMAPQ < 3 13.6 11.3 10.9 9.6 10.9 11.4 11.0 9.5 8.8 9.8 10.6 10.4 10.1 9.6 10.1 10.3 9.7 9.5 9.1 9.5 9.5 9.4 9.5 9.4 9.7 9.7 9.5 9.7 9.5 9.4 9.7 9.3 9.5 9.6 9.3 9.5 9.6 9.7 9.6 9.7 9.5 9.6 9.3 9.4 9.3 9.6 9.3 9.2 9.4 9.4 9.4 9.5 9.3 9.5 9.5 9.6 9.6 9.5 9.5 9.6 9.6 9.9 9.7 9.7 9.8 9.6 10.1 9.9 9.8 9.9 9.5 9.7 9.7 9.4
AAUnmapped 17.2 13.1 12.9 11.6 13.3 14.0 13.4 11.4 10.5 11.7 12.8 10.4 10.2 12.1 12.8 13.0 12.3 11.7 11.2 11.8 12.4 12.0 11.7 11.7 12.3 12.4 11.8 11.5 11.2 11.8 12.2 11.6 11.2 11.0 11.6 11.9 11.7 11.4 11.0 11.7 11.8 11.6 11.1 10.8 11.1 11.4 11.1 10.6 10.2 10.5 10.8 10.7 10.2 10.1 10.6 11.0 10.7 10.3 9.8 10.4 10.6 10.4 10.1 9.8 10.4 10.5 10.6 10.0 9.7 9.9 10.0 9.5 9.1 8.8
ACMAPQ >= 30 4.5 4.1 5.5 5.0 5.6 5.1 5.3 4.5 4.5 4.7 4.8 4.1 5.7 4.9 5.0 5.0 5.1 5.0 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.2 5.1 5.2 5.1 5.2 5.2 5.2 5.1 5.1 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.1
ACMAPQ >= 20 5.2 4.3 5.4 4.8 5.6 4.9 5.2 4.5 4.5 4.5 4.7 4.1 5.7 5.1 5.0 5.0 5.2 5.1 4.9 5.2 5.1 5.0 5.0 4.9 5.0 5.0 5.0 4.9 4.9 5.1 5.0 5.3 5.1 5.1 5.0 5.2 4.9 5.3 5.1 5.3 5.3 5.3 5.3 5.0 5.4 5.0 5.3 5.0 5.1 5.2 5.0 5.1 5.0 5.0 5.1 5.2 5.2 5.2 5.2 5.1 5.2 5.2 5.1 5.2 5.1 5.1 5.0 5.1 5.1 5.0 5.1 4.9 5.0 5.0
ACMAPQ >= 10 4.4 4.0 5.3 4.7 5.5 4.8 5.3 4.2 4.5 4.4 4.7 4.1 5.7 5.0 5.1 5.0 5.2 4.9 4.6 4.9 5.0 4.8 4.9 4.6 5.0 4.9 4.8 4.6 4.7 5.2 4.7 5.1 4.9 4.9 4.8 5.1 4.8 5.0 4.9 5.0 5.4 5.0 5.1 4.6 5.0 4.7 5.1 4.9 4.9 5.2 4.8 5.0 4.8 4.8 5.0 5.0 5.1 5.2 5.2 5.2 5.4 5.2 5.2 5.1 5.1 5.0 4.9 5.1 5.0 4.9 4.9 4.9 4.8 5.1
ACMAPQ >= 3 4.5 4.0 5.6 5.0 5.6 5.1 5.6 4.5 4.9 5.0 5.2 4.1 6.0 5.4 5.5 5.2 5.5 5.1 5.1 5.2 5.5 5.2 5.3 5.2 5.4 5.3 5.2 5.1 5.0 5.4 5.2 5.3 5.1 5.1 5.1 5.3 4.9 5.5 5.2 5.2 5.8 5.2 5.6 5.3 5.2 5.1 5.6 5.2 5.4 5.2 5.1 5.2 4.9 5.2 4.8 5.1 5.2 5.2 5.2 5.3 5.4 5.3 5.4 5.5 5.2 5.1 5.2 5.2 5.0 5.0 5.3 4.9 5.3 5.3
ACMAPQ < 3 4.3 4.0 5.4 4.7 5.5 4.7 5.1 4.3 4.4 4.4 4.6 3.9 5.2 4.9 4.9 4.9 5.1 5.0 4.8 5.0 4.9 4.8 4.9 4.8 5.0 4.9 4.9 4.9 4.9 5.1 4.8 5.1 4.9 4.9 4.8 5.0 4.8 5.0 5.1 5.1 5.2 5.1 5.1 4.8 5.1 4.9 5.1 4.9 5.0 5.1 4.9 5.0 4.9 5.0 5.0 5.0 5.0 5.2 5.2 5.2 5.1 5.1 5.1 5.1 5.0 5.0 4.9 5.0 4.9 4.9 5.0 4.9 4.9 4.9
ACUnmapped 5.5 4.2 5.4 4.6 5.4 4.6 5.0 4.4 4.3 4.4 4.6 3.8 3.9 4.8 4.8 4.8 5.1 4.9 4.8 4.9 4.9 4.9 4.7 4.5 4.8 4.9 4.8 4.8 4.8 4.9 5.0 5.0 4.8 4.7 4.7 5.0 4.7 4.8 4.8 4.9 4.9 4.9 4.9 4.5 5.0 4.6 4.9 4.5 4.6 4.7 4.6 4.6 4.7 4.6 4.8 4.8 4.7 4.9 4.8 4.9 5.0 4.9 4.8 4.8 4.7 4.9 4.8 4.9 4.6 4.7 4.8 4.7 4.6 4.4
AGMAPQ >= 30 11.0 6.0 6.7 8.0 7.5 7.0 5.7 5.7 5.8 6.4 6.6 5.7 7.2 6.8 7.0 7.0 7.0 7.2 7.1 7.2 7.1 7.2 7.3 7.2 7.2 7.2 7.2 7.3 7.2 7.3 7.2 7.2 7.2 7.1 7.2 7.3 7.3 7.2 7.3 7.2 7.2 7.2 7.2 7.2 7.2 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.4 7.4 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3
AGMAPQ >= 20 11.1 6.0 6.6 7.6 7.0 6.8 5.7 5.5 5.7 6.1 6.5 5.3 7.1 6.5 6.5 6.7 6.6 6.9 6.7 6.8 6.7 6.9 7.1 6.9 6.8 7.1 6.9 7.5 7.0 7.2 6.7 6.9 6.9 6.6 6.9 7.0 6.8 6.8 6.8 6.8 6.7 6.7 6.5 6.7 6.7 6.8 7.0 6.9 7.1 6.9 7.2 6.8 7.0 7.1 7.3 6.7 6.8 6.8 6.7 7.4 6.9 6.9 6.8 6.7 6.8 6.8 6.6 6.9 6.7 7.1 7.0 7.1 6.8 7.0
AGMAPQ >= 10 11.2 5.9 6.2 7.6 7.0 6.6 5.6 5.3 5.4 6.3 6.6 5.5 7.1 6.7 6.4 6.4 6.4 7.1 6.5 6.7 6.6 6.8 7.5 6.9 6.9 7.1 6.7 7.4 7.0 7.0 6.2 6.8 6.6 6.3 6.7 6.8 6.6 6.4 6.4 6.6 6.4 6.5 6.3 6.9 6.5 6.7 6.9 6.7 7.0 6.6 7.0 6.5 6.8 7.0 7.3 6.5 6.6 6.6 6.6 7.1 6.8 6.5 6.6 6.7 6.8 6.7 6.9 6.9 6.7 7.0 6.9 7.2 6.7 6.9
AGMAPQ >= 3 11.1 5.9 6.2 7.6 7.2 6.4 6.1 5.3 5.8 6.7 7.0 5.8 7.6 6.7 7.0 7.0 7.1 7.8 6.7 6.9 7.1 7.1 7.9 7.2 7.0 6.8 6.9 7.4 7.4 7.0 6.4 7.2 6.8 6.6 7.1 6.8 6.7 6.5 6.7 6.5 6.2 6.2 6.4 6.6 6.5 6.7 7.1 6.8 7.5 6.7 7.2 6.9 6.8 7.7 7.0 6.9 6.5 6.9 6.8 7.4 6.9 6.5 6.9 6.8 6.9 7.0 7.0 6.9 6.7 7.2 7.7 7.2 6.9 6.6
AGMAPQ < 3 10.7 5.7 6.4 7.6 6.9 6.5 5.5 5.2 5.4 6.0 6.4 5.4 6.7 6.6 6.5 6.8 6.6 6.8 6.4 6.5 6.5 6.7 6.9 6.6 6.6 6.7 6.7 6.9 6.8 6.7 6.4 6.7 6.5 6.5 6.6 6.7 6.5 6.7 6.4 6.6 6.5 6.5 6.3 6.6 6.4 6.6 6.7 6.5 6.8 6.6 6.8 6.5 6.7 6.7 6.8 6.5 6.5 6.5 6.5 6.9 6.5 6.6 6.6 6.7 6.7 6.7 6.6 6.9 6.7 6.9 7.0 6.9 6.6 6.6
AGUnmapped 10.1 5.5 6.4 6.8 6.5 6.3 5.1 5.3 5.2 5.6 6.0 4.7 5.1 6.0 6.0 6.2 6.0 6.2 6.1 6.1 6.2 6.2 6.4 6.1 6.3 6.5 6.5 6.7 6.6 6.4 6.6 6.5 6.4 6.4 6.5 6.6 6.4 6.6 6.4 6.5 6.7 6.4 6.4 6.5 6.5 6.5 6.7 6.5 6.8 6.8 7.0 6.6 6.9 6.7 6.9 6.7 6.7 6.6 6.7 7.1 6.8 7.0 6.8 6.8 6.9 7.0 6.7 7.2 7.1 7.4 7.4 7.4 7.3 7.3
ATMAPQ >= 30 18.0 8.2 12.3 8.4 9.4 9.4 10.5 9.5 8.2 8.3 8.3 6.9 9.3 8.1 8.1 8.1 8.0 8.0 8.0 8.0 8.0 7.9 7.9 7.9 7.9 7.9 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.7 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.7 7.7 7.8 7.7 7.7 7.7 7.6 7.7 7.7 7.7 7.7 7.6 7.6 7.7 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.6 7.7 7.7 7.7 7.7
ATMAPQ >= 20 18.4 8.5 11.7 8.2 8.6 9.8 10.6 9.0 7.9 7.8 8.8 7.1 9.5 8.0 7.8 8.5 8.3 8.0 8.2 8.0 8.0 8.2 7.8 8.0 7.7 7.8 8.1 7.8 7.9 7.8 7.7 8.0 7.8 7.8 7.7 7.8 8.2 7.8 7.7 7.9 7.8 8.1 7.8 7.7 7.9 7.7 8.0 7.4 7.4 8.0 7.9 7.6 7.9 7.3 7.9 8.0 7.6 7.9 7.4 7.6 8.0 7.6 7.9 7.6 7.8 7.9 7.7 8.0 7.7 8.0 8.2 8.0 8.0 7.7
ATMAPQ >= 10 16.5 8.5 10.8 8.0 7.9 9.4 10.2 8.4 7.3 7.4 8.6 7.2 8.8 7.8 7.2 8.2 8.0 7.6 7.7 7.7 7.7 7.8 7.4 7.8 7.2 7.6 7.8 7.7 7.8 7.7 7.6 7.9 7.8 7.8 7.5 7.4 8.0 8.0 7.8 7.9 7.7 8.0 7.6 7.6 7.9 7.5 7.9 7.2 7.2 8.1 7.8 7.4 8.0 7.2 8.0 7.7 7.5 8.0 7.2 7.6 7.9 7.5 7.9 7.5 7.5 7.6 7.3 7.9 7.2 7.4 7.8 7.6 7.9 7.5
ATMAPQ >= 3 16.4 7.7 10.6 7.6 8.1 8.5 9.1 8.0 6.6 7.4 7.4 6.6 8.4 7.1 6.9 7.1 7.1 6.8 7.2 7.2 6.9 7.2 7.4 6.9 6.8 7.4 6.8 7.2 7.2 6.9 6.9 7.2 7.4 7.1 6.9 7.1 7.5 7.9 7.3 7.6 7.3 7.3 7.1 6.7 7.0 6.8 7.0 7.1 6.8 7.2 7.2 7.3 7.0 7.1 7.2 6.9 7.4 7.8 6.8 7.1 7.3 7.2 7.3 7.2 7.1 7.0 6.9 7.4 6.8 7.2 7.4 7.2 7.4 7.1
ATMAPQ < 3 17.9 8.9 11.9 8.5 8.8 10.1 11.0 9.3 8.1 7.9 9.1 7.4 8.6 8.2 7.8 8.7 8.5 8.1 8.6 8.2 8.5 8.6 8.0 8.6 8.0 8.1 8.6 8.3 8.4 8.3 8.1 8.6 8.3 8.3 8.1 8.1 8.6 8.3 8.2 8.3 8.2 8.6 8.3 8.0 8.6 8.1 8.6 7.9 7.9 8.7 8.4 8.1 8.5 7.9 8.6 8.4 8.1 8.5 7.9 8.2 8.4 7.9 8.3 8.0 8.3 8.2 8.0 8.6 8.0 8.2 8.4 8.0 8.5 8.1
ATUnmapped 21.0 9.6 13.2 8.5 9.7 11.1 11.7 10.5 8.5 8.6 9.9 7.8 7.5 8.2 8.5 9.6 9.5 8.9 8.3 8.3 9.3 9.6 8.6 8.2 8.1 9.3 9.3 8.7 8.2 8.1 9.3 9.2 8.7 8.0 7.9 9.2 8.9 8.5 7.7 7.8 9.0 8.7 8.9 7.7 8.3 8.8 9.1 8.1 7.7 8.2 9.1 8.8 8.5 7.6 8.1 9.0 9.0 8.4 7.8 7.8 9.1 8.8 8.3 7.9 8.0 9.2 8.8 8.5 8.0 8.0 9.2 8.8 8.3 7.6
CAMAPQ >= 30 8.0 4.1 6.7 7.5 6.6 7.4 5.7 6.6 6.9 7.0 6.9 7.4 5.9 7.1 7.2 7.2 7.2 7.2 7.2 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.4 7.4 7.4 7.4 7.3 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.5 7.5 7.4 7.4 7.4 7.5 7.5 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.3 7.4 7.4 7.4
CAMAPQ >= 20 7.7 4.3 6.9 7.5 7.0 7.8 5.7 6.7 7.1 7.7 7.1 7.5 6.0 7.2 7.6 7.1 7.3 7.4 7.5 7.5 7.5 7.2 7.3 7.5 7.4 7.5 7.4 7.3 7.4 7.4 7.6 7.5 7.5 7.3 7.8 7.7 7.6 7.4 7.7 7.4 7.6 7.3 7.5 7.8 7.8 7.9 7.4 7.5 7.6 7.7 7.5 7.3 7.5 7.7 7.5 7.4 7.4 7.4 7.7 7.7 7.4 7.4 7.4 7.6 7.5 7.4 7.5 7.4 7.6 7.5 7.3 7.3 7.6 7.4
CAMAPQ >= 10 8.7 4.3 7.3 7.8 7.3 7.8 5.6 7.2 7.4 8.5 7.5 7.7 6.6 7.4 8.0 7.3 7.7 7.5 7.9 7.7 7.7 7.5 7.8 8.1 7.5 7.9 7.8 7.7 7.9 7.6 8.3 7.9 7.9 7.7 8.4 8.3 8.2 8.0 8.1 7.9 8.0 7.6 7.9 7.8 8.0 8.1 7.6 7.7 8.0 7.7 7.8 7.5 7.8 8.2 7.7 7.9 7.9 7.9 8.0 8.3 7.6 7.9 7.8 8.2 7.8 7.8 8.0 7.6 7.8 7.8 7.9 7.6 8.2 7.6
CAMAPQ >= 3 8.7 4.5 7.6 7.9 7.2 8.1 5.9 7.5 7.8 8.5 7.7 7.6 6.6 7.4 8.3 7.5 7.7 7.7 7.9 7.8 7.9 7.7 7.9 8.3 7.7 8.2 8.1 8.3 8.1 7.8 8.8 8.2 8.1 7.9 8.2 8.2 8.2 7.8 7.9 7.7 7.8 7.9 7.6 7.5 8.5 8.0 8.2 7.8 8.0 7.8 8.0 7.1 8.0 7.8 7.5 7.6 7.9 7.7 7.7 7.9 7.5 7.8 7.5 7.6 7.6 8.1 8.0 7.3 7.9 7.6 7.7 7.5 8.0 7.9
CAMAPQ < 3 8.5 4.4 7.2 7.9 7.3 8.1 5.7 7.1 7.4 8.1 7.3 7.3 6.2 7.4 7.8 7.4 7.3 7.6 7.8 7.6 7.8 7.4 7.7 7.8 7.6 7.8 7.9 7.6 7.8 7.7 8.1 7.8 7.8 7.6 8.0 8.0 7.9 7.6 7.8 7.7 7.9 7.5 7.7 7.9 7.9 7.9 7.5 7.7 8.0 7.8 7.7 7.6 7.7 7.9 7.7 7.7 7.9 7.8 8.0 8.1 7.7 7.7 7.7 7.9 7.8 7.8 8.0 7.6 7.7 7.7 7.6 7.7 7.8 7.7
CAUnmapped 7.1 4.3 6.2 7.3 7.2 7.5 5.5 6.0 6.7 7.7 6.8 5.6 5.1 6.8 7.5 6.8 6.6 6.4 7.1 7.6 7.2 6.6 6.3 6.9 7.4 7.0 6.8 6.4 6.9 7.6 7.2 6.8 6.4 6.9 7.6 7.1 6.8 6.3 7.0 7.4 7.1 6.8 6.4 7.2 7.4 7.4 6.5 6.5 7.0 7.8 7.1 6.8 6.5 7.0 7.6 7.0 6.8 6.4 7.1 7.6 7.1 6.7 6.4 7.0 7.5 6.8 6.7 6.4 6.9 7.3 6.8 6.5 6.3 6.8
CCMAPQ >= 30 3.9 2.9 4.1 3.3 3.5 3.9 4.3 4.6 4.3 4.4 4.4 3.8 3.8 4.8 4.7 4.7 4.8 4.9 4.9 4.9 4.8 4.9 4.9 4.8 4.9 4.8 4.9 4.9 4.8 4.8 4.8 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 5.0 5.0 5.0 5.0 5.0 4.9 4.9 4.9 4.9 4.9 4.9 5.0 4.9 4.9 4.9 5.0 5.0 5.0 5.0 4.9 5.0 5.0 5.0 4.9 5.0 5.0 5.0 5.0 4.9 4.9 4.9 4.9 4.9
CCMAPQ >= 20 3.6 2.8 4.1 3.8 3.8 4.0 4.4 4.7 4.9 4.7 4.5 3.7 3.7 5.0 4.7 4.8 4.9 4.9 5.1 5.1 4.9 4.9 4.8 4.7 4.9 4.9 5.0 4.9 4.8 4.9 4.8 4.8 5.1 5.1 5.2 4.9 5.0 4.9 5.1 5.1 5.0 5.1 5.2 5.3 5.2 5.1 5.0 5.2 5.3 5.2 5.0 4.9 5.2 5.0 4.9 5.0 5.0 5.0 5.2 5.2 5.0 5.1 5.2 5.2 5.0 5.2 5.1 5.2 5.2 4.9 4.9 5.1 5.1 5.4
CCMAPQ >= 10 4.4 3.2 4.7 4.4 4.2 4.4 5.0 5.6 5.8 5.4 4.9 4.2 4.1 6.0 5.3 5.6 5.7 5.6 5.8 5.8 5.6 5.6 5.6 5.4 5.8 5.7 5.9 5.8 5.3 5.5 5.5 5.6 5.8 5.8 6.0 5.8 6.0 5.5 5.8 5.7 5.6 6.1 6.1 6.1 6.2 6.3 5.8 6.2 6.3 6.0 5.6 5.6 6.1 5.7 5.7 5.8 5.8 5.8 6.2 6.2 5.6 5.9 6.3 6.1 5.7 6.0 6.0 6.0 6.0 5.7 5.6 6.0 6.0 6.2
CCMAPQ >= 3 4.7 3.6 5.1 4.5 4.4 4.5 5.3 6.3 6.1 5.8 5.1 4.2 4.2 5.9 5.5 5.9 6.0 6.1 6.1 5.9 5.9 5.9 5.7 5.8 6.2 5.8 6.0 6.1 5.5 6.0 5.8 5.7 5.9 6.1 6.3 6.1 5.9 5.5 6.0 5.9 5.9 6.1 6.4 6.8 6.7 7.0 6.2 6.8 6.9 6.4 6.0 6.0 5.9 5.6 5.9 6.0 6.0 5.9 6.1 6.1 5.6 5.9 6.0 6.0 5.7 6.0 6.0 6.2 5.8 5.7 5.6 6.3 6.5 6.5
CCMAPQ < 3 4.1 2.9 4.3 4.1 4.0 4.0 4.6 4.9 5.1 4.9 4.6 3.8 3.9 5.2 5.0 5.0 5.1 5.1 5.1 5.2 5.1 5.0 5.0 5.0 5.2 5.1 5.2 5.0 4.9 5.2 5.0 5.0 5.1 5.1 5.4 5.1 5.0 4.9 5.1 5.2 4.9 5.0 5.4 5.3 5.3 5.3 5.2 5.4 5.3 5.2 5.1 5.0 5.3 5.1 5.1 5.2 5.0 5.2 5.3 5.3 5.1 5.2 5.3 5.3 5.1 5.2 5.1 5.1 5.1 4.9 5.1 5.1 5.2 5.3
CCUnmapped 2.9 2.5 3.8 4.0 3.8 3.5 3.7 4.1 4.7 4.2 3.9 3.0 3.3 4.7 4.4 4.0 3.8 4.3 4.8 4.6 4.2 3.9 4.2 4.8 4.4 4.2 3.9 4.4 4.9 4.5 4.2 3.9 4.5 5.1 4.8 4.4 4.2 4.5 5.2 5.0 4.6 4.3 4.7 5.2 4.9 4.6 4.5 4.9 5.4 5.1 4.8 4.4 4.9 5.4 4.9 4.7 4.3 4.8 5.3 5.0 4.7 4.5 4.8 5.5 5.0 4.7 4.4 4.8 5.4 4.9 4.6 4.4 4.8 5.4
CGMAPQ >= 30 0.5 0.4 0.4 0.7 0.6 0.8 0.5 0.8 0.8 0.8 0.8 0.7 0.7 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.9 0.8 0.8 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.8 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 1.0 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 1.0 0.9 0.9 0.9 0.9
CGMAPQ >= 20 1.0 0.6 0.8 1.4 1.3 1.5 0.9 1.5 1.7 1.4 1.2 1.0 1.2 1.5 1.5 1.5 1.4 1.4 1.5 1.4 1.4 1.5 1.5 1.4 1.5 1.4 1.5 1.4 1.5 1.5 1.5 1.7 1.5 1.5 1.7 1.6 1.6 1.5 1.7 1.7 1.6 1.5 1.5 1.6 1.6 1.5 1.5 1.6 1.6 1.6 1.5 1.5 1.6 1.7 1.7 1.6 1.5 1.8 1.6 1.8 1.6 1.6 1.7 1.6 1.7 1.5 1.5 1.6 1.6 1.8 1.6 1.6 1.6 1.7
CGMAPQ >= 10 1.3 0.7 0.9 1.7 1.6 1.8 1.1 1.9 2.1 1.6 1.6 1.4 1.5 1.9 1.9 1.9 1.7 1.8 1.9 1.9 1.9 1.9 1.8 1.8 1.8 1.8 1.8 1.7 1.8 1.9 1.8 2.0 1.8 1.6 2.0 1.9 1.9 1.9 1.9 2.1 1.8 1.9 1.8 1.7 1.8 1.8 1.8 1.8 1.8 1.9 1.8 1.8 1.9 2.0 1.9 1.8 1.8 2.1 1.9 2.0 1.9 1.9 1.8 1.9 1.9 1.7 1.8 1.7 1.8 2.0 1.9 1.7 1.6 1.9
CGMAPQ >= 3 1.1 0.7 0.7 1.1 1.3 1.3 1.0 1.6 1.4 1.1 1.3 1.2 1.1 1.3 1.5 1.3 1.3 1.6 1.3 1.6 1.4 1.7 1.5 1.5 1.5 1.6 1.5 1.4 1.6 1.6 1.6 1.5 1.5 1.3 1.6 1.6 1.4 1.6 1.5 1.6 1.5 1.6 1.5 1.4 1.4 1.4 1.5 1.3 1.5 1.6 1.6 1.4 1.5 1.8 1.5 1.4 1.5 1.5 1.5 1.5 1.5 1.4 1.5 1.3 1.4 1.3 1.5 1.4 1.5 1.6 1.4 1.2 1.3 1.5
CGMAPQ < 3 1.0 0.6 0.8 1.4 1.3 1.5 0.9 1.5 1.8 1.4 1.3 1.1 1.2 1.6 1.6 1.5 1.4 1.4 1.6 1.5 1.4 1.6 1.5 1.5 1.5 1.6 1.5 1.4 1.5 1.6 1.5 1.7 1.5 1.5 1.7 1.6 1.6 1.6 1.6 1.7 1.6 1.6 1.5 1.5 1.5 1.5 1.5 1.6 1.6 1.6 1.5 1.5 1.6 1.6 1.6 1.5 1.5 1.6 1.5 1.6 1.6 1.5 1.5 1.5 1.6 1.5 1.5 1.5 1.5 1.6 1.6 1.4 1.5 1.5
CGUnmapped 0.9 0.7 0.9 1.5 1.3 1.4 0.9 1.4 1.6 1.5 1.3 1.2 1.2 1.6 1.6 1.5 1.4 1.5 1.7 1.5 1.5 1.4 1.6 1.6 1.7 1.6 1.6 1.6 1.9 1.8 1.7 1.7 1.7 1.9 2.0 1.9 1.9 1.9 2.1 2.0 2.0 1.8 1.9 2.0 2.0 2.0 2.0 2.0 2.1 2.1 2.1 2.0 2.1 2.4 2.4 2.2 2.2 2.3 2.5 2.6 2.4 2.4 2.5 2.6 2.7 2.5 2.5 2.7 2.9 3.0 2.8 2.8 3.1 3.3
CTMAPQ >= 30 13.6 4.2 6.3 6.4 6.0 6.8 7.0 7.4 6.6 6.8 6.8 5.8 5.7 6.7 6.8 6.7 6.7 6.8 6.8 6.7 6.8 6.8 6.8 6.8 6.9 6.8 6.8 6.9 6.8 6.8 6.8 6.8 6.9 6.9 6.9 6.8 6.8 6.8 6.8 6.8 6.8 6.9 6.9 6.9 6.9 6.9 6.9 6.8 6.8 6.9 6.9 6.9 6.9 6.8 6.8 6.8 6.9 6.9 6.9 6.8 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.9 6.8 6.8 6.8 6.8 6.8
CTMAPQ >= 20 12.0 4.2 6.1 6.3 5.8 6.5 6.8 7.3 6.3 6.7 6.5 5.6 5.6 6.3 6.7 6.7 6.4 6.9 6.6 6.6 6.8 6.7 6.7 6.4 6.7 6.6 6.4 6.7 6.4 6.4 6.4 6.3 6.6 6.3 6.5 6.3 6.4 6.3 6.4 6.6 6.5 7.0 6.8 6.8 6.6 6.8 6.8 6.6 6.5 6.7 6.8 6.6 6.6 6.2 6.6 6.3 6.7 6.7 6.5 6.4 6.7 6.3 6.4 6.3 6.7 6.5 6.6 6.4 6.5 6.1 6.3 6.2 6.4 6.4
CTMAPQ >= 10 13.0 4.1 6.2 6.6 6.0 6.9 6.7 7.7 6.2 6.6 6.3 5.8 5.8 6.3 6.9 6.8 6.4 7.1 6.4 6.6 6.8 6.5 6.6 6.1 6.6 6.5 6.5 6.7 6.4 6.3 6.4 6.3 7.0 6.2 6.6 6.1 6.4 6.6 6.4 6.5 6.3 7.2 6.8 7.1 6.5 6.8 7.0 6.6 6.6 7.0 7.0 6.8 6.9 6.0 6.8 6.4 6.9 6.9 6.4 6.8 7.2 6.7 6.6 6.5 6.9 6.9 7.0 7.0 6.8 6.4 6.4 6.2 6.4 6.2
CTMAPQ >= 3 13.5 4.3 6.5 7.1 6.5 6.9 6.8 7.8 6.5 6.4 6.6 5.8 5.8 6.5 7.1 6.7 6.7 7.0 6.6 6.7 6.7 6.5 6.6 5.8 7.2 6.5 6.6 6.6 6.5 6.0 6.6 6.5 6.6 6.2 6.7 6.3 6.8 6.7 6.6 6.8 6.3 7.5 7.0 7.6 6.8 6.8 6.9 6.6 6.7 7.3 7.1 7.0 7.4 6.3 7.0 6.8 7.1 7.3 7.0 7.2 7.4 7.0 7.0 6.9 7.2 7.1 7.0 7.1 6.9 6.3 6.4 6.3 6.7 6.6
CTMAPQ < 3 12.6 3.9 6.0 6.2 5.8 6.5 6.6 7.1 6.2 6.5 6.4 5.3 5.5 6.2 6.4 6.5 6.3 6.7 6.3 6.5 6.6 6.3 6.5 6.0 6.5 6.4 6.2 6.4 6.3 6.2 6.4 6.2 6.5 6.2 6.4 6.2 6.4 6.3 6.3 6.4 6.4 6.6 6.6 6.6 6.4 6.6 6.4 6.5 6.4 6.5 6.7 6.5 6.6 6.1 6.4 6.4 6.4 6.5 6.5 6.3 6.8 6.5 6.5 6.4 6.6 6.5 6.5 6.5 6.3 6.2 6.4 6.2 6.4 6.4
CTUnmapped 10.2 3.8 5.7 5.6 5.5 6.0 6.2 6.4 5.8 6.0 5.9 4.6 4.7 5.4 5.6 5.7 5.7 5.9 5.7 5.7 5.9 5.8 5.9 5.4 5.6 5.6 5.5 5.4 5.5 5.3 5.7 5.5 5.7 5.3 5.5 5.4 5.5 5.3 5.4 5.4 5.6 5.6 5.7 5.4 5.6 5.5 5.4 5.5 5.4 5.4 5.6 5.4 5.4 5.1 5.4 5.2 5.5 5.2 5.3 5.1 5.4 5.3 5.4 5.1 5.3 5.2 5.3 5.1 5.2 4.9 5.2 5.0 5.1 5.1
GAMAPQ >= 30 3.7 7.2 5.9 6.1 7.3 6.5 5.6 4.2 5.0 5.6 5.6 6.4 4.9 5.8 5.9 5.9 6.0 6.0 6.1 6.1 6.1 6.2 6.1 6.2 6.1 6.1 6.2 6.2 6.2 6.1 6.1 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.3 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.3 6.2 6.3 6.2 6.3 6.3 6.3 6.2 6.2 6.2 6.3 6.4 6.2 6.3 6.2 6.3 6.2 6.3 6.3 6.3 6.3 6.4 6.3 6.3 6.3
GAMAPQ >= 20 4.4 7.9 6.3 6.7 8.3 7.0 6.2 4.6 5.7 6.8 6.1 7.0 5.3 6.4 6.7 6.5 6.6 6.4 6.5 6.7 6.6 6.8 6.8 6.7 6.8 6.6 7.4 7.0 7.2 6.7 6.7 7.0 6.8 6.7 6.7 6.8 6.8 6.7 6.8 6.9 6.9 6.7 6.6 6.7 6.7 6.8 6.4 6.8 7.0 6.8 6.7 6.8 6.8 7.1 7.0 6.9 6.8 6.7 7.3 6.8 7.3 6.8 6.8 6.9 6.8 6.8 6.9 6.5 6.9 6.8 7.1 6.7 6.6 6.9
GAMAPQ >= 10 4.7 8.1 6.4 7.0 8.3 7.5 6.3 4.5 6.0 6.8 6.3 7.1 5.4 6.5 7.2 6.7 6.9 6.6 6.7 6.8 6.9 7.4 7.0 6.9 7.1 6.5 7.6 7.2 7.3 6.8 6.8 7.0 7.0 6.6 6.8 7.0 6.6 6.9 6.8 7.1 7.1 6.6 6.9 6.9 7.1 7.0 6.4 6.9 7.4 7.0 6.7 7.0 7.0 7.4 7.3 7.1 7.0 6.8 7.6 7.2 7.3 6.8 6.9 6.7 7.0 6.8 7.1 6.6 7.1 7.2 7.6 7.3 6.9 7.0
GAMAPQ >= 3 3.9 7.0 5.9 6.2 6.7 6.5 5.7 4.2 5.5 5.7 6.2 6.4 5.0 5.9 5.9 6.3 6.6 5.8 6.5 6.1 6.9 7.0 6.1 6.5 6.4 6.0 6.8 6.5 6.7 6.2 6.2 6.4 6.2 6.3 6.2 6.6 6.2 6.4 6.2 6.5 6.3 5.8 6.1 6.2 6.4 6.3 6.2 6.2 6.5 6.3 6.2 6.3 6.6 6.4 6.8 6.3 6.4 6.2 6.8 6.7 6.7 6.2 6.5 6.1 6.3 6.1 6.3 5.9 6.3 7.0 7.0 7.1 6.2 6.4
GAMAPQ < 3 4.7 8.1 6.4 6.7 8.5 7.3 6.3 4.6 5.7 7.0 6.3 6.7 5.6 6.7 7.2 6.8 6.9 6.7 6.7 6.9 6.8 7.1 7.0 6.8 6.9 6.8 7.4 7.1 7.1 7.0 6.8 6.9 6.9 6.6 6.9 7.0 6.9 7.0 6.9 7.0 7.1 6.9 6.9 6.9 7.0 7.1 6.5 7.0 7.2 7.0 6.8 7.0 7.0 7.3 7.2 6.9 6.9 6.8 7.2 6.8 7.2 6.9 6.9 7.0 6.9 6.9 7.2 6.8 7.1 7.1 7.3 7.2 6.6 7.0
GAUnmapped 4.5 7.7 5.8 6.5 8.2 7.1 6.0 4.4 5.6 6.9 6.1 5.3 4.9 6.6 7.1 6.5 6.4 6.0 6.4 7.0 6.7 6.5 6.2 6.9 7.2 6.9 7.2 6.6 7.1 7.7 7.0 7.0 6.5 7.0 7.4 7.1 7.0 6.5 7.1 7.6 7.1 7.1 6.6 6.9 7.3 7.1 6.6 6.6 7.1 7.6 7.2 7.2 6.7 7.4 7.8 7.5 7.2 6.7 7.5 7.7 7.9 7.3 7.1 7.7 7.9 8.0 7.7 7.2 8.0 8.3 8.3 7.8 7.5 8.3
GCMAPQ >= 30 1.5 2.4 2.9 3.0 3.7 3.2 3.6 3.1 3.4 3.7 3.7 3.3 3.3 3.9 4.0 4.0 4.1 4.0 4.1 4.1 4.1 4.1 4.1 4.2 4.1 4.1 4.1 4.1 4.1 4.1 4.2 4.2 4.1 4.1 4.1 4.1 4.2 4.2 4.1 4.2 4.2 4.2 4.1 4.2 4.1 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.3 4.2 4.2 4.2 4.2 4.3 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.3 4.2 4.2 4.2
GCMAPQ >= 20 1.4 2.4 3.1 3.1 3.7 3.2 3.7 3.1 3.4 3.6 3.6 3.2 3.1 4.0 3.9 3.8 4.1 4.0 4.1 4.1 4.1 4.2 4.0 4.3 4.1 4.0 4.1 4.0 4.0 4.2 4.4 4.2 4.0 4.1 4.1 4.1 4.2 4.2 4.0 4.1 4.2 4.1 4.1 4.1 4.0 4.1 4.0 4.2 4.2 4.2 4.0 4.3 4.1 4.1 4.4 4.3 4.3 4.2 4.2 4.2 4.2 4.1 4.2 4.0 4.2 4.2 4.1 4.1 3.9 4.0 4.2 4.2 4.1 4.0
GCMAPQ >= 10 1.8 2.7 3.6 3.4 4.0 3.5 4.4 3.3 3.7 4.0 4.0 3.9 3.7 4.4 4.4 4.2 4.4 4.3 4.5 4.6 4.5 4.7 4.4 5.0 4.6 4.6 4.6 4.5 4.5 4.8 5.1 4.7 4.2 4.7 4.6 4.4 4.8 4.7 4.4 4.3 4.7 4.6 4.3 4.6 4.5 4.6 4.5 4.6 4.5 4.5 4.3 4.6 4.3 4.5 4.8 4.9 4.7 4.5 4.6 4.5 4.6 4.6 4.6 4.4 4.8 4.8 4.6 4.5 4.4 4.5 4.6 4.8 4.5 4.5
GCMAPQ >= 3 2.0 3.1 3.9 3.5 4.2 3.7 4.8 3.7 3.9 4.0 4.2 4.2 3.8 5.0 4.5 4.5 4.8 4.3 4.9 4.6 4.5 4.7 4.6 5.2 4.8 4.7 4.7 4.6 4.4 5.1 5.4 4.7 4.5 4.7 4.6 4.3 4.7 4.6 4.4 4.4 4.9 4.8 4.3 4.9 4.5 4.5 4.3 4.8 4.5 4.9 4.3 4.8 4.5 4.7 4.9 5.0 4.8 4.5 4.7 4.6 5.1 4.7 4.6 4.4 5.3 5.0 5.2 5.0 4.6 4.7 4.8 5.3 4.9 4.6
GCMAPQ < 3 1.5 2.4 3.0 3.0 3.7 3.1 3.7 3.0 3.3 3.5 3.6 3.2 3.2 4.0 3.9 3.8 4.1 3.9 4.1 4.1 3.9 4.1 3.9 4.2 4.0 3.9 4.0 4.1 3.9 4.2 4.2 4.1 3.9 4.1 4.1 3.9 4.1 4.1 3.9 3.9 4.0 4.0 3.9 4.0 4.0 4.0 4.0 4.0 4.0 4.2 3.8 4.0 3.8 4.0 4.2 4.1 4.1 4.0 4.0 4.0 4.1 4.0 4.1 4.0 4.1 4.1 4.1 4.0 3.9 4.0 4.0 4.2 4.0 4.0
GCUnmapped 1.1 1.9 2.5 2.6 3.1 2.6 2.9 2.5 2.9 3.0 3.0 2.4 2.5 3.2 3.1 3.1 3.3 3.3 3.6 3.5 3.3 3.3 3.2 3.5 3.4 3.3 3.3 3.5 3.4 3.5 3.3 3.3 3.3 3.4 3.4 3.3 3.4 3.5 3.4 3.4 3.4 3.4 3.6 3.4 3.6 3.4 3.6 3.6 3.8 3.8 3.6 3.8 3.7 3.9 3.9 3.7 3.8 3.8 3.8 3.9 3.7 3.8 3.8 3.8 3.8 3.7 3.7 3.7 3.7 3.7 3.7 3.7 3.8 3.9
GGMAPQ >= 30 3.4 4.4 4.5 3.8 4.1 4.1 3.6 3.2 3.9 4.3 4.4 3.8 3.8 4.6 4.7 4.8 4.9 5.0 5.0 5.1 5.1 5.0 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.2 5.1 5.1 5.1 5.1 5.2 5.2 5.1 5.2 5.2 5.2 5.1 5.2 5.1 5.2 5.1 5.2 5.2 5.2 5.1 5.2 5.2 5.2 5.2 5.3 5.2 5.2 5.2 5.2 5.3 5.3 5.2 5.2 5.3 5.3 5.3 5.3 5.3 5.3 5.4 5.4 5.3 5.3 5.3
GGMAPQ >= 20 3.5 4.6 4.9 4.2 4.5 4.4 3.7 3.6 4.4 4.6 4.7 3.8 3.7 4.9 4.9 4.9 4.9 5.1 5.4 5.2 5.4 5.0 5.3 5.6 5.3 5.5 5.3 5.4 5.5 5.6 5.7 5.3 5.4 5.5 5.3 5.6 5.6 5.3 5.5 5.7 5.5 5.4 5.3 5.2 5.4 5.1 5.4 5.4 5.3 5.2 5.3 5.5 5.3 5.4 5.6 5.4 5.3 5.4 5.4 5.5 5.6 5.3 5.5 5.5 5.5 5.5 5.4 5.4 5.4 5.7 5.5 5.3 5.5 5.4
GGMAPQ >= 10 4.5 5.6 5.9 4.7 5.2 5.4 4.1 4.0 5.1 5.4 5.6 4.3 4.2 5.5 5.7 5.4 5.4 5.8 6.5 6.4 6.5 5.7 6.2 6.8 6.1 6.5 6.2 6.4 6.7 6.8 6.6 5.9 6.0 6.2 5.7 6.2 6.1 5.6 5.9 6.2 5.9 5.6 5.8 5.6 5.9 5.4 5.9 5.9 5.8 5.5 5.8 6.0 5.8 5.9 6.1 5.9 5.5 5.7 5.7 5.9 5.9 5.5 5.5 5.7 5.7 5.7 5.4 5.6 5.7 6.2 6.0 5.8 5.8 5.7
GGMAPQ >= 3 4.6 5.8 5.7 4.4 4.9 5.6 4.2 4.0 4.7 5.7 5.2 4.5 4.4 5.3 5.8 5.8 5.4 6.3 6.9 6.8 6.5 5.9 6.6 7.0 6.5 6.7 6.3 6.7 7.2 7.3 6.9 6.3 6.6 6.4 5.9 6.2 6.1 5.5 6.1 6.5 6.0 5.6 5.9 5.3 5.7 5.6 5.7 5.9 5.8 5.8 5.8 6.2 5.7 6.2 6.5 6.2 5.9 6.2 6.2 6.3 6.2 5.7 5.7 6.0 5.8 5.9 5.6 5.9 5.8 6.2 6.2 6.1 5.9 5.8
GGMAPQ < 3 3.9 4.6 4.9 4.3 4.7 4.5 3.6 3.5 4.4 4.6 4.8 3.9 4.0 5.1 5.0 5.0 4.9 5.2 5.6 5.2 5.5 5.0 5.3 5.6 5.3 5.5 5.3 5.3 5.6 5.5 5.5 5.1 5.2 5.4 5.2 5.4 5.4 5.1 5.3 5.4 5.4 5.1 5.2 5.1 5.3 5.0 5.3 5.2 5.2 5.0 5.1 5.3 5.2 5.4 5.3 5.3 5.2 5.2 5.2 5.4 5.4 5.1 5.3 5.3 5.3 5.3 5.1 5.1 5.2 5.4 5.4 5.3 5.5 5.3
GGUnmapped 3.0 3.7 4.2 4.1 4.3 3.8 3.2 3.3 4.3 4.3 4.2 3.3 3.6 4.7 4.5 4.4 4.2 4.6 5.1 4.8 4.8 4.5 4.9 5.3 5.1 5.1 4.8 5.2 5.7 5.5 5.4 5.0 5.6 5.9 5.7 5.7 5.4 5.7 6.1 6.0 5.8 5.5 5.6 5.9 5.7 5.5 5.3 5.7 5.9 5.7 5.7 5.5 5.8 6.2 6.1 5.9 5.7 6.1 6.3 6.3 6.3 5.8 6.3 6.6 6.5 6.3 5.9 6.3 6.7 6.5 6.3 6.0 6.5 6.7
GTMAPQ >= 30 4.7 4.0 4.5 4.3 5.2 4.8 5.5 4.5 4.4 4.9 4.8 4.1 4.1 4.8 4.9 4.9 5.0 5.0 5.0 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.2 5.2 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.0 5.1 5.2 5.1 5.0 5.0 5.0 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.0 5.2 5.1 5.1 5.1
GTMAPQ >= 20 4.6 4.1 4.5 4.4 4.9 4.7 5.5 4.4 4.5 4.9 4.8 4.0 4.0 4.8 4.9 4.8 4.9 4.8 4.8 5.0 4.9 4.9 4.9 4.9 5.3 4.9 5.2 4.9 5.3 5.2 5.6 5.2 5.2 5.3 5.1 5.1 5.2 5.3 4.9 5.1 5.2 5.1 4.9 5.1 5.0 5.1 5.0 5.1 5.0 5.2 5.1 5.0 5.2 4.9 5.3 5.2 4.9 4.8 4.9 4.6 5.1 4.8 4.8 4.8 4.8 4.8 4.7 4.6 4.9 4.7 5.3 4.9 5.0 5.0
GTMAPQ >= 10 4.8 4.1 4.7 4.5 4.9 4.8 5.8 4.6 4.4 5.1 4.7 4.3 4.2 5.0 4.9 4.9 4.8 4.9 4.8 5.0 5.0 4.9 4.9 4.9 5.3 4.9 5.1 4.6 5.0 5.0 5.4 5.0 5.1 5.1 4.9 5.0 5.1 5.2 4.7 4.8 5.3 5.0 4.9 5.0 5.0 5.0 4.9 5.1 4.9 5.2 4.7 4.9 5.1 4.7 5.2 4.9 4.9 4.5 4.5 4.3 4.6 4.8 4.8 4.7 4.8 4.7 4.5 4.8 4.9 4.8 5.0 4.6 4.9 4.9
GTMAPQ >= 3 5.2 4.3 5.3 4.9 5.3 5.1 5.9 4.9 4.4 5.0 5.1 4.3 4.5 5.3 4.9 5.1 5.0 5.0 4.9 5.2 5.1 5.2 5.1 5.1 5.5 5.2 5.2 4.8 5.0 5.3 5.5 5.2 5.3 5.3 5.3 5.2 5.2 5.3 5.1 5.4 5.9 5.4 5.2 5.3 5.2 5.4 5.4 5.3 5.2 5.4 5.0 5.2 5.4 4.9 5.6 5.2 5.3 4.3 4.7 4.8 4.8 5.1 5.0 5.1 5.1 5.1 5.0 5.3 5.4 5.1 5.3 4.8 5.0 5.1
GTMAPQ < 3 4.7 3.9 4.4 4.2 4.9 4.7 5.6 4.4 4.4 4.8 4.7 4.1 4.0 4.9 4.9 4.8 4.8 4.8 4.8 4.9 4.9 4.9 4.8 5.0 5.2 4.9 5.0 4.8 4.9 5.0 5.1 4.9 5.0 5.1 4.8 4.9 5.0 5.1 4.9 4.8 5.1 5.0 4.9 4.9 4.9 4.9 5.0 5.0 4.9 5.0 4.9 4.9 4.9 4.8 5.0 4.9 4.9 4.6 4.7 4.5 4.9 4.7 4.8 4.7 4.9 4.8 4.9 4.7 5.1 4.8 5.1 4.8 5.0 4.9
GTUnmapped 4.2 3.6 4.1 3.8 4.5 4.3 5.1 4.0 4.2 4.5 4.5 3.7 3.6 4.5 4.6 4.4 4.7 4.4 4.5 4.6 4.6 4.6 4.6 4.6 4.8 4.6 4.8 4.5 4.7 4.6 4.8 4.8 4.6 4.8 4.5 4.7 4.8 4.7 4.7 4.6 4.8 4.7 4.7 4.7 4.8 4.8 4.8 4.8 4.6 4.6 4.8 4.8 4.8 4.5 4.8 4.7 4.7 4.5 4.6 4.3 4.8 4.6 4.5 4.4 4.5 4.5 4.7 4.2 4.5 4.3 4.9 4.6 4.6 4.6
TAMAPQ >= 30 3.9 13.5 7.6 9.8 7.9 7.4 6.9 7.3 8.0 7.4 7.2 8.4 5.9 7.0 7.0 7.0 6.9 6.9 6.9 6.8 6.8 6.8 6.7 6.7 6.7 6.7 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.5 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.5 6.6 6.5 6.5 6.6 6.5 6.5 6.5 6.5 6.5 6.5 6.4 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.4 6.5 6.4 6.4 6.4 6.5
TAMAPQ >= 20 3.3 11.5 6.3 8.3 6.6 6.2 5.7 6.2 6.6 6.3 6.1 7.6 4.9 6.0 6.0 5.8 6.0 5.8 6.0 5.8 5.9 5.9 5.7 5.7 5.6 5.7 5.4 5.5 5.5 5.4 5.4 5.5 5.4 5.4 5.6 5.5 5.5 5.5 5.5 5.4 5.5 5.3 5.5 5.5 5.4 5.4 5.4 5.5 5.4 5.4 5.4 5.5 5.4 5.5 5.4 5.4 5.4 5.3 5.4 5.4 5.3 5.4 5.4 5.4 5.3 5.4 5.3 5.5 5.5 5.7 5.6 5.6 5.5 5.8
TAMAPQ >= 10 2.7 9.7 5.2 7.3 5.6 5.1 4.8 5.0 5.6 5.2 5.5 6.3 4.3 5.2 5.1 4.8 4.9 4.6 4.9 4.9 4.6 5.0 4.6 4.6 4.6 4.6 4.4 4.6 4.5 4.3 4.4 4.5 4.4 4.3 4.3 4.5 4.5 4.4 4.6 4.4 4.4 4.3 4.5 4.4 4.5 4.6 4.5 4.8 4.6 4.6 4.7 4.6 4.4 4.5 4.3 4.6 4.6 4.5 4.6 4.7 4.7 4.5 4.7 4.5 4.5 4.7 4.6 4.5 4.6 4.5 4.5 4.5 4.3 4.6
TAMAPQ >= 3 3.1 10.7 5.6 8.1 6.2 6.0 5.1 5.7 6.1 5.7 6.0 7.1 4.6 6.0 5.6 5.4 5.4 5.0 5.3 5.4 5.2 5.4 5.1 4.9 4.8 5.0 4.7 4.8 4.7 4.6 4.9 4.8 4.8 4.6 4.8 4.9 5.0 4.8 5.1 4.8 5.0 4.7 5.0 4.8 4.9 4.9 4.8 5.1 5.1 5.2 5.4 5.0 5.0 5.0 4.9 5.1 5.3 5.0 5.4 5.0 5.5 4.9 5.4 5.4 5.4 5.1 5.3 5.1 5.3 5.2 5.1 4.9 4.7 5.0
TAMAPQ < 3 3.1 10.9 5.8 7.8 6.1 5.7 5.3 5.7 6.2 5.8 5.7 6.4 4.6 5.6 5.5 5.3 5.5 5.3 5.6 5.4 5.3 5.4 5.2 5.2 5.1 5.3 5.1 5.1 5.2 5.0 5.1 5.2 5.1 5.0 5.1 5.1 5.2 5.2 5.2 5.1 5.1 5.0 5.1 5.2 5.1 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.1 5.1 5.3 5.0 5.3 5.2 5.1 5.1 5.1 5.2 5.1 5.2 5.1 5.2 5.2 5.2 5.0 5.1 4.9 5.1
TAUnmapped 3.6 12.9 6.6 9.3 7.3 6.6 6.7 6.7 7.5 6.9 6.8 5.5 5.2 6.5 6.4 6.5 6.4 6.4 6.4 6.3 6.3 6.2 6.2 6.1 6.1 6.2 6.0 6.2 6.0 6.0 5.8 5.9 5.9 5.9 6.1 5.6 5.9 5.7 5.8 5.7 5.6 5.8 5.5 6.1 5.5 5.9 5.6 5.6 5.9 5.6 5.7 5.7 5.6 5.7 5.6 5.6 5.5 5.7 5.6 5.8 5.4 5.6 5.6 5.6 5.7 5.6 5.6 5.7 5.6 5.7 5.4 5.5 5.2 5.3
TCMAPQ >= 30 1.6 8.1 5.4 5.5 5.9 5.4 6.2 6.5 6.7 6.1 6.1 5.0 5.0 5.9 5.8 5.8 5.8 5.8 5.7 5.7 5.7 5.7 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.9 5.8 5.8 5.7 5.8 5.8 5.8 5.8 5.8 5.9 5.9 5.9 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.7 5.8 5.8 5.8 5.9 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.7 5.8 5.8 5.8
TCMAPQ >= 20 1.7 8.4 6.4 6.1 6.6 5.7 6.9 7.7 7.6 6.5 6.6 5.4 5.8 6.5 6.5 6.3 6.4 6.7 6.5 6.4 6.2 6.3 6.3 6.5 6.3 6.4 6.1 6.2 6.4 6.2 6.1 6.4 6.1 6.9 6.3 6.4 6.0 6.5 6.5 6.3 6.4 6.5 6.7 6.8 6.6 6.4 6.6 6.6 6.7 6.2 6.4 6.7 6.2 6.6 5.9 6.2 6.5 6.5 6.6 6.1 6.1 6.3 6.2 6.4 6.2 6.3 6.3 6.6 6.1 6.4 6.0 6.6 6.6 6.5
TCMAPQ >= 10 1.8 9.3 7.0 6.7 7.1 5.7 7.6 8.5 8.2 6.5 6.8 5.8 6.5 6.6 6.9 6.8 6.6 7.1 7.1 6.6 6.4 6.7 6.6 6.7 6.6 6.8 6.5 6.5 6.7 6.5 6.5 7.0 6.4 7.8 6.7 7.2 6.4 6.9 7.1 6.7 7.1 6.9 7.2 7.1 7.2 6.6 7.0 7.0 7.0 6.6 7.0 7.4 6.8 7.1 6.4 6.8 7.1 7.1 7.2 6.4 6.7 6.8 6.6 6.9 6.7 7.0 6.8 6.8 6.4 6.7 6.3 6.6 6.6 6.6
TCMAPQ >= 3 1.8 9.2 6.1 6.4 6.6 5.7 7.5 7.2 7.0 5.9 5.9 5.2 5.6 6.1 6.0 6.2 6.2 6.4 6.0 6.2 5.8 6.0 5.8 6.4 5.7 6.3 6.7 5.9 6.4 6.1 5.5 6.4 6.0 7.0 6.2 6.6 6.1 6.3 6.6 6.0 6.6 6.3 7.1 6.3 6.8 6.1 6.4 6.4 6.3 6.3 6.1 6.7 6.3 6.5 6.2 6.4 6.4 6.6 6.6 6.1 6.0 6.1 5.9 6.0 6.2 6.3 5.7 5.8 5.7 5.8 5.6 6.1 5.9 6.0
TCMAPQ < 3 1.8 9.0 7.0 6.6 6.9 6.0 7.3 8.2 8.0 6.7 6.7 5.8 6.2 6.7 6.6 6.5 6.5 6.9 6.7 6.6 6.5 6.7 6.6 6.8 6.7 6.8 6.4 6.5 6.9 6.6 6.7 6.8 6.5 7.3 6.7 6.9 6.4 6.8 6.9 6.6 6.7 7.0 6.9 7.0 6.8 6.5 7.0 6.9 6.8 6.5 6.8 7.1 6.6 6.8 6.5 6.6 7.0 6.8 6.8 6.6 6.6 6.8 6.6 6.8 6.7 6.6 6.6 6.7 6.5 6.8 6.3 6.7 6.7 6.9
TCUnmapped 1.8 8.1 6.8 6.5 6.1 5.5 6.5 7.7 7.5 6.3 5.9 5.1 5.6 6.4 5.7 5.5 6.0 6.8 6.2 5.9 5.3 6.0 6.6 6.4 5.8 5.4 5.8 6.5 6.1 5.8 5.4 6.1 6.5 6.7 5.8 5.7 5.8 6.9 6.4 5.9 5.5 6.1 6.8 6.7 6.0 5.8 6.0 6.9 6.5 5.9 5.6 6.1 6.7 6.4 5.6 5.5 5.9 6.8 6.4 5.9 5.4 6.0 6.7 6.4 5.8 5.6 6.1 7.0 6.3 6.2 5.6 6.6 7.4 7.0
TGMAPQ >= 30 3.0 7.1 5.6 7.7 6.3 6.4 5.2 7.0 7.9 7.2 7.1 6.0 6.1 7.2 7.2 7.4 7.2 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.4 7.3 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.3 7.4 7.4 7.3 7.4 7.3 7.3 7.4 7.4 7.3 7.3 7.4 7.4 7.3 7.4 7.3 7.4 7.4 7.3 7.3 7.3 7.4 7.4 7.4 7.2 7.4 7.3 7.4 7.4 7.3 7.3 7.4 7.4 7.5 7.3 7.3 7.3 7.3
TGMAPQ >= 20 3.2 7.5 6.1 8.2 6.5 6.4 5.5 7.3 8.1 7.1 7.2 6.0 6.4 7.5 7.0 7.4 7.4 7.4 7.4 7.6 7.4 7.5 7.7 7.6 7.5 7.9 7.6 7.9 7.7 7.9 7.8 7.5 7.9 7.5 7.7 7.5 7.5 7.7 7.7 7.6 7.4 7.4 7.7 7.6 7.5 7.5 7.5 7.7 7.4 7.4 7.6 7.7 7.6 7.9 7.3 7.6 7.4 7.8 7.5 7.5 6.9 7.5 7.3 7.4 7.2 7.3 7.1 7.3 7.4 7.5 6.9 7.2 7.3 7.0
TGMAPQ >= 10 3.5 8.3 6.6 8.4 7.3 6.8 5.6 8.0 8.7 7.4 7.3 6.4 7.1 8.1 7.2 7.6 8.1 7.9 7.8 7.9 7.7 8.0 8.1 7.7 7.8 8.0 8.0 8.0 7.9 8.3 8.1 7.6 8.2 7.9 8.1 7.8 7.7 7.9 8.2 8.1 7.7 7.8 8.2 8.3 7.9 7.8 7.9 8.2 7.7 7.5 8.0 7.9 8.1 8.5 7.5 7.9 7.5 8.0 7.7 7.5 7.1 7.9 7.6 8.0 7.7 7.5 7.5 7.8 8.4 8.0 7.6 7.5 7.8 7.6
TGMAPQ >= 3 3.4 8.4 6.3 8.1 7.5 7.4 5.6 7.7 8.6 7.3 7.3 6.2 6.7 7.8 7.4 7.6 7.4 7.5 7.7 7.6 7.8 7.7 7.8 7.6 7.7 7.8 8.1 7.7 7.8 8.0 7.8 7.6 7.9 7.7 7.7 7.5 7.6 8.2 8.5 8.4 8.0 8.2 8.1 8.4 8.3 7.8 8.0 8.0 7.7 7.2 7.8 7.6 8.2 8.1 7.6 7.9 7.3 7.9 7.8 7.7 7.3 8.2 7.5 8.3 8.1 7.9 7.9 7.9 9.1 8.3 8.0 7.4 7.8 7.9
TGMAPQ < 3 3.4 7.8 6.2 8.5 6.7 6.6 5.5 7.6 8.3 7.4 7.3 6.4 6.7 7.7 7.3 7.5 7.7 7.7 7.6 7.9 7.7 7.8 7.9 7.8 7.8 7.8 7.8 7.8 7.7 7.9 7.7 7.4 8.0 7.6 7.7 7.5 7.7 7.7 7.7 7.9 7.5 7.6 7.9 7.8 7.7 7.8 7.7 8.1 7.6 7.5 7.8 7.8 8.0 8.0 7.4 7.9 7.4 7.7 7.6 7.6 7.3 7.7 7.5 7.7 7.7 7.8 7.5 7.7 7.9 7.9 7.6 7.6 7.7 7.6
TGUnmapped 2.8 6.8 5.6 7.5 5.7 5.7 5.0 6.8 7.5 6.5 6.3 5.4 5.7 6.9 6.4 6.5 6.7 7.4 7.0 6.9 6.4 6.8 7.4 7.4 6.8 6.8 6.9 7.3 7.1 6.8 6.4 6.7 7.4 6.9 6.6 6.3 6.6 7.1 7.0 6.6 6.3 6.7 7.0 7.0 6.6 6.4 6.6 7.2 6.9 6.6 6.5 7.0 7.2 7.2 6.4 6.6 6.5 7.1 6.6 6.7 6.0 6.5 6.8 6.7 6.5 6.1 6.3 6.7 6.3 6.3 5.6 6.2 6.6 6.2
TTMAPQ >= 30 4.1 11.7 9.4 9.4 8.3 9.8 12.4 14.6 13.5 12.0 11.5 9.5 9.3 10.6 10.3 10.1 9.9 9.7 9.6 9.4 9.5 9.5 9.5 9.5 9.5 9.5 9.5 9.4 9.4 9.4 9.4 9.4 9.3 9.4 9.3 9.3 9.2 9.3 9.2 9.2 9.2 9.2 9.3 9.3 9.3 9.3 9.3 9.2 9.1 9.1 9.2 9.2 9.2 9.2 9.1 9.2 9.2 9.2 9.2 9.0 9.1 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.1 9.1 9.3 9.3 9.3
TTMAPQ >= 20 4.0 11.4 9.4 8.9 8.1 9.2 12.1 13.8 12.2 11.0 10.6 9.2 8.7 10.1 9.7 9.7 9.8 9.4 9.2 9.0 9.1 9.2 9.3 8.9 8.9 8.6 8.8 9.0 8.7 8.7 8.8 9.0 9.1 9.0 8.9 8.7 9.0 9.1 8.7 8.5 8.6 8.8 9.1 8.6 8.7 8.9 9.0 9.0 8.6 8.6 9.1 9.0 8.9 8.7 8.4 9.0 9.2 8.8 8.8 8.5 8.9 9.4 9.2 9.2 9.0 9.3 9.7 9.3 9.4 9.0 9.3 9.7 9.4 9.5
TTMAPQ >= 10 4.0 11.1 9.1 8.5 7.7 8.8 12.0 13.1 11.4 10.4 9.9 8.9 8.4 9.2 9.0 8.8 9.2 8.7 8.5 8.1 8.6 8.4 8.3 8.2 8.1 7.8 7.9 8.1 8.1 8.2 8.2 8.5 8.7 8.5 8.5 8.1 8.0 8.2 8.1 7.7 7.7 8.1 8.4 7.8 7.8 8.2 8.2 8.0 7.7 7.8 8.5 8.2 8.0 7.9 7.6 8.3 8.1 7.9 7.7 7.4 7.7 8.2 8.3 8.2 7.9 7.9 8.1 7.9 8.1 7.8 8.0 8.6 8.2 8.6
TTMAPQ >= 3 4.2 10.9 9.3 9.1 8.4 9.3 11.5 12.9 11.9 10.4 10.1 8.6 8.3 9.5 9.3 9.1 9.1 9.0 8.8 8.2 8.6 8.1 8.4 8.5 8.1 8.6 8.2 8.3 8.1 8.1 8.1 8.3 8.5 8.5 8.4 8.4 8.3 8.6 8.3 8.0 8.2 8.6 8.7 8.4 8.0 8.2 7.9 7.7 7.6 7.7 8.2 8.1 8.1 8.3 7.8 8.3 8.2 8.4 7.9 7.6 8.0 8.2 8.8 8.3 7.9 8.0 8.2 8.3 8.1 7.8 7.7 8.3 8.3 8.4
TTMAPQ < 3 4.0 11.6 9.4 8.8 8.0 9.2 12.5 14.1 12.3 11.1 10.7 9.4 8.7 9.7 9.5 9.2 9.5 9.3 9.1 8.9 9.1 9.1 9.3 8.9 8.9 8.7 8.7 9.0 8.7 8.8 8.9 9.1 9.3 9.1 9.2 8.9 8.9 9.1 8.9 8.7 8.8 8.9 9.1 8.8 8.7 9.2 9.0 8.9 8.7 8.7 9.2 9.1 8.9 8.8 8.5 9.1 9.0 8.9 8.8 8.5 8.7 9.2 9.0 8.9 8.5 8.7 8.9 8.7 8.9 8.4 8.8 9.3 9.0 9.2
TTUnmapped 3.9 11.7 9.6 9.2 8.2 10.0 13.3 14.9 13.2 11.9 11.9 10.3 9.7 11.4 11.0 11.3 12.0 11.4 10.8 10.3 10.9 11.8 11.5 10.8 10.2 10.3 11.0 10.6 10.0 9.6 10.1 11.0 10.6 10.2 9.8 10.0 11.0 10.4 9.8 9.3 9.7 10.6 10.3 9.9 9.6 10.1 10.9 10.6 9.7 9.3 9.7 10.5 9.9 9.2 8.8 9.4 10.3 9.9 9.3 8.8 9.1 10.3 9.8 9.3 8.7 9.2 10.1 9.5 9.0 8.3 8.9 10.0 9.3 8.9
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.

Error Distribution

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3

Nucleotide Composition MAPQ >= 30

A C G T N

Nucleotide Composition MAPQ >= 20

A C G T N

Nucleotide Composition MAPQ >= 10

A C G T N

Nucleotide Composition MAPQ >= 3

A C G T N

Nucleotide Composition MAPQ < 3

A C G T N

Nucleotide Composition Unmapped

A C G T N

Length Distribution MAPQ >= 30

Length Distribution MAPQ >= 20

Length Distribution MAPQ >= 10

Length Distribution MAPQ >= 3

Length Distribution MAPQ < 3

Length Distribution Unmapped

Top 5 over-represented 2-mers MAPQ >= 30

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
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TT

AT

CA

TG

AA

TT

AT

AG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

AG

AA

TT

AT

AG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 20

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

CT

AG

CA

AA

TA

TT

AT

TC

AT

AA

TT

CA

AG

AA

TT

TA

AT

TG

AA

AT

GA

TT

CA

AA

AT

TT

CA

GA

TT

AA

AT

TC

CT

TT

AA

AT

TC

TG

TT

AA

TG

AT

TC

TT

AA

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

TA

CA

AT

AA

AT

TT

AG

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

TG

AT

CA

AA

TT

AT

TG

CA

AA

TT

TG

AT

AG

AA

TT

AT

TG

CA

AA

TT

TG

AT

CA

AA

TT

TG

AT

CA

AA

TT

AT

CA

TG

AA

TT

TG

AT

CA

AA

TT

AT

TG

CA

AA

TT

CA

TG

AT

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

CA

AT

TG

AA

TT

AT

CA

TG

AA

TT

CA

AT

TG

AA

TT

AT

TG

CA

AA

TT

TG

CA

AT

AA

TT

CA

TG

AT

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

TG

AT

CA

AA

TT

AT

TG

CA

AA

TT

TG

CA

AT

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

CA

TG

AT

AA

TT

CA

AT

TG

AA

TT

AT

CA

GA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

GA

TT

AA

AT

CA

TG

TT

AA

AT

CA

TG

TT

AA

AT

CA

TG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 10

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

CT

AA

AG

CA

TT

AA

TA

TC

AT

AT

AA

TT

CA

TC

AA

TT

TG

AT

CA

AA

GA

AT

TT

CA

AA

AT

TT

CA

GA

TT

AT

AA

TC

CT

TT

AA

TC

AT

TG

TT

TG

AA

TC

CA

TT

AA

CA

TG

AT

TT

AA

AT

CA

TG

AA

TT

CA

AT

GA

AA

AT

TT

AG

TG

TT

AA

TG

AT

CA

TT

AA

CA

TG

AT

AA

TT

AT

TG

CA

TT

AA

TG

AT

CA

TT

AA

TG

AT

CA

TT

AA

CA

TG

AT

AA

TT

TG

CA

AT

TT

AA

AT

CA

TG

AA

TT

TG

AT

CA

AA

TT

TG

CA

AG

AA

TT

CA

AT

TG

AA

TT

TG

CA

AT

AA

TG

CA

TT

AT

AA

TG

TT

AT

CA

AA

TT

TG

AT

CA

AA

TT

TG

CA

AT

TG

AA

TT

AT

CA

AA

CA

TT

TG

AT

TT

AA

CA

AT

TG

TT

AA

TG

CA

AT

AA

TT

TG

TC

AT

TT

CA

AA

TG

AT

AA

CA

TT

TG

AT

AA

CA

AT

TT

TG

AA

TT

AT

CA

TG

AA

TG

TT

CA

AT

AA

TG

CA

AT

TT

AA

CA

TG

TT

AT

AA

TT

AT

TG

CA

TT

AA

TG

CA

AT

AA

TG

TT

CA

AT

AA

CA

AT

TG

TT

AA

TT

CA

TG

AT

AA

TT

TG

AT

CA

AA

TG

TT

CA

AT

AA

CA

TG

TT

GA

AA

AT

TT

CA

TG

AA

TT

TG

CA

AT

AA

TT

TG

CA

AT

AA

TG

TT

AT

CA

AA

TG

CA

TT

GA

AA

AT

CA

TT

TG

AA

TT

TG

CA

AT

AA

TT

CA

AT

TG

AA

AT

TG

TT

CA

AA

CA

TT

TG

GA

AA

CA

AT

TG

TT

AA

AT

TT

CA

GA

AA

TT

CA

TG

AT

AA

TT

AT

CA

TG

AA

TT

CA

TG

AT

AA

TT

CA

TG

AT

AA

TT

CA

AT

TG

AA

TT

CA

TG

AT

AA

TT

AT

TG

CA

AA

TG

TT

CA

AT

AA

TG

CA

TT

AT

AA

TT

CA

AT

GA

AA

TT

CA

AT

TG

AA

TT

CA

AT

TG

AA

TT

TG

CA

AT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

CT

AA

AG

CA

TT

TA

AA

TC

TG

AT

AA

TT

CA

CT

TT

AA

TA

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

TT

AA

AT

TC

CT

TT

AA

AT

CT

TG

TT

AA

TG

CA

TC

TT

AA

CA

AT

TG

TT

AA

CA

AT

TG

AA

TT

CA

TA

AT

AA

AT

TT

AG

TG

TT

AA

TG

CA

AT

TT

AA

CA

TG

CT

AA

TT

TG

CA

AT

TT

AA

CA

TG

AG

TT

AA

AG

CA

TG

TT

AA

CA

TG

AT

AA

TT

CA

TG

AT

TT

AA

CA

TG

AG

AA

TT

TG

CA

AT

TT

AA

CA

AG

TG

TT

CA

AA

TG

AG

AA

TT

CA

TG

CT

TT

CA

AA

TG

AT

AA

TT

CA

TG

AG

AA

TT

CA

TG

AG

AA

CA

TT

TG

AG

AA

TT

TG

CA

GG

CA

AA

TT

TG

AT

AA

TT

CA

TG

AG

AA

TT

CA

TG

AT

AA

TT

CA

TG

AT

AA

TT

CA

TG

AG

AA

TT

CA

TG

AT

AA

TT

CA

TG

AT

AA

TT

TG

AT

CA

AA

TG

TT

CA

AT

AA

TG

TT

CA

AT

AA

TT

TG

CA

AT

AA

TT

TG

CA

CT

TT

AA

TG

CA

TC

TT

TG

AA

CT

CA

CA

TG

AA

TT

AT

AA

TT

CA

TG

CC

AA

CA

TG

TT

AG

AA

TG

CA

TT

AT

AA

CA

TG

TT

AG

AA

CA

TT

CT

TG

AA

TT

CA

TG

AG

AA

TT

TG

AT

CA

AA

TG

TT

CA

CT

AA

TT

TG

CA

AG

AA

TT

TG

CA

AT

AA

TT

TG

CA

AT

AA

TT

CA

AT

TG

AA

TT

TG

AT

CA

AA

TT

TG

CA

CT

AA

CA

TG

TT

AG

AA

TT

CA

CT

AT

AA

TT

TG

CA

AT

AA

TT

CA

TG

AT

AA

TG

TT

CA

AT

AA

TG

TT

CA

CT

AA

CA

TT

TG

CT

AA

TT

CA

TG

AG

AA

TT

TG

AT

CA

AA

TG

TT

CA

CT

AA

TG

TT

CA

AT

AA

TG

CA

AG

TT

AA

TT

CA

TG

AT

AA

TT

CA

TG

AT

AA

TT

CA

TG

AT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ < 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

CT

AG

CA

TT

AA

TA

TC

AT

AT

AA

TT

CA

TC

AA

TT

TG

AT

CA

AA

AT

GA

TT

CA

AA

AT

TT

CA

GA

TT

AT

AA

TC

CT

TT

AA

AT

TC

TG

TT

AA

TG

AT

TC

TT

AA

CA

AT

TG

TT

AA

AT

TG

CA

AA

TT

AT

CA

GA

AA

TT

AT

AG

TG

TT

AA

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

TT

AA

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

TG

AT

CA

AA

TT

CA

AT

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

TG

AT

CA

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

CA

AT

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers Unmapped

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

CT

AG

CA

AA

TA

TT

AT

TC

AT

AA

TT

TC

TA

AA

TA

TT

AT

TG

AA

AT

TT

GA

TA

AA

AT

TT

CA

GA

AA

TT

AT

TA

TC

TT

AA

AT

TC

TG

TT

AA

AT

TG

TA

TT

AA

AT

CA

GA

AA

TT

AT

CA

TA

AA

TT

AT

CA

TA

AA

TT

AT

TG

TC

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

TG

CA

AA

TT

AT

TG

TC

AA

TT

AT

CA

TG

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

TG

CA

AA

TT

AT

TG

TC

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

GA

TG

AA

TT

AT

TG

AG

AA

TT

AT

TG

GA

AA

TT

AT

GA

CA

AA

TT

AT

CA

GA

AA

TT

AT

GA

CA

AA

TT

AT

TG

GA

AA

TT

AT

GA

TG

AA

TT

AT

CA

GA

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

TT

AT

TG

TC

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

TT

AT

CA

GA

AA

TT

AT

GA

CA

AA

TT

AT

TG

TC

AA

TT

AT

CA

TG

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

AG

TG

AA

TT

AT

TG

TC

AA

TT

AT

GA

CA

AA

TT

AT

CA

GA

AA

TT

AT

GA

CA

AA

TT

AT

GA

TG

AA

TT

AT

TG

AG

AA

TT

AT

GA

TG

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

TT

AT

TG

TC

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

AT

TT

GA

CA

AA

TT

AT

GA

AG

AA

TT

AT

GA

TG

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

TT

AT

GA

AG

AA

TT

AT

GA

CA

AA

TT

AT

GA

AG

AA

TT

GA

AT

AG

AA

GA

TT

AT

AG

AA

AT

TT

GA

AG

TT

AA

AT

GA

AG

TT

AA

AT

GA

TC

TT

AA

GA

AT

AG

 
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 20 over-represented 10-mers

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3 Unmapped
SeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-value
GCCTGTAATC 232670 0.0e+00 AAAAAAAAAA 79792 0.0e+00 GATTCCATTC 31540 0.0e+00 CTCCTGACCT 5071 0.0e+00 GAATGGAATC 148393 0.0e+00 TTTTTTTTTT 1203783 0.0e+00
TGGGATTACA 227487 0.0e+00 TTTTTTTTTT 70270 0.0e+00 GAATGGAATC 29959 0.0e+00 TCCTGACCTC 4481 0.0e+00 GATTCCATTC 147572 0.0e+00 AAAAAAAAAA 961384 0.0e+00
GGGATTACAG 218514 0.0e+00 ATTCCATTCC 49574 0.0e+00 TGATTCCATT 26281 0.0e+00 GGAGGCTGAG 4264 0.0e+00 TGATTCCATT 127874 0.0e+00 ATTCCATTCC 574252 0.0e+00
GCTGGGATTA 215765 0.0e+00 TTCCATTCCA 47850 0.0e+00 AATGGAATCA 25703 0.0e+00 GAGGCTGAGG 4233 0.0e+00 AATGGAATCA 126648 0.0e+00 TTCCATTCCA 565588 0.0e+00
TTTGGGAGGC 212963 0.0e+00 GATTCCATTC 47451 0.0e+00 ATTCCATTCC 24658 0.0e+00 AGGCTGAGGC 4049 0.0e+00 ATTCCATTCG 124638 0.0e+00 CCATTCCATT 551755 0.0e+00
CACTTTGGGA 210626 0.0e+00 GAATGGAATC 46504 0.0e+00 TTCCATTCCA 23569 0.0e+00 GGCTGAGGCA 3782 0.0e+00 CGAATGGAAT 121831 0.0e+00 TCCATTCCAT 548486 0.0e+00
CCAGGCTGGA 204280 0.0e+00 TCCATTCCAT 45951 0.0e+00 ATTCCATTCG 23213 0.0e+00 CCATTCCATT 3673 0.0e+00 TTCCATTCGA 116337 0.0e+00 AATGGAATGG 547613 0.0e+00
AGCACTTTGG 203415 0.0e+00 CCATTCCATT 45946 0.0e+00 TCCATTCGAT 22898 0.0e+00 ATTCCATTCC 3672 0.0e+00 TCGAATGGAA 115260 0.0e+00 GGAATGGAAT 547033 0.0e+00
CAGGCTGGAG 201636 0.0e+00 GGAATGGAAT 44573 0.0e+00 ATCGAATGGA 22686 0.0e+00 CATTCCATTC 3667 0.0e+00 ATCGAATGGA 111530 0.0e+00 TGGAATGGAA 546045 0.0e+00
AGGCTGGAGT 200114 0.0e+00 AATGGAATCA 44199 0.0e+00 TCCATTCCAT 22646 0.0e+00 GCTGAGGCAG 3664 0.0e+00 ATTCCATTCC 108140 0.0e+00 ATGGAATGGA 543545 0.0e+00
CCAGCACTTT 189572 0.0e+00 TGATTCCATT 43769 0.0e+00 CCATTCCATT 22281 0.0e+00 TTCCATTCCA 3653 0.0e+00 TTCCATTCCA 108030 0.0e+00 CATTCCATTC 541159 0.0e+00
AAAAATTAGC 187531 0.0e+00 TGGAATGGAA 43657 0.0e+00 ATGATTCCAT 22204 0.0e+00 TCCATTCCAT 3620 0.0e+00 ATGATTCCAT 107865 0.0e+00 GAATGGAATG 525999 0.0e+00
AAAAGAAAAA 182069 0.0e+00 ATGGAATGGA 42769 0.0e+00 TTCCATTCGA 21771 0.0e+00 CTGAGGCAGG 3589 0.0e+00 TCCATTCGAT 107376 0.0e+00 AGATCGGAAG 278085 0.0e+00
CTCCCAAAGT 168901 0.0e+00 AATGGAATGG 42749 0.0e+00 GGAATGGAAT 21710 0.0e+00 CTCAGCCTCC 3550 0.0e+00 ATGGAATCAT 105694 0.0e+00 GATCGGAAGA 265933 0.0e+00
TCCCAAAGTG 167614 0.0e+00 CATTCCATTC 41890 0.0e+00 ATGGAATCAT 21460 0.0e+00 TCCCAGCTAC 3526 0.0e+00 TCCATTCCAT 104887 0.0e+00 ATCGGAAGAG 253783 0.0e+00
AAAAATAAAA 164163 0.0e+00 ATTCCATTCG 39197 0.0e+00 TGGAATGGAA 21063 0.0e+00 CCTCAGCCTC 3503 0.0e+00 CCATTCCATT 103259 0.0e+00 TCGGAAGAGC 239109 0.0e+00
TTTTTAAAAA 163163 0.0e+00 GAATGGAATG 38581 0.0e+00 CGAATGGAAT 20918 0.0e+00 AGGCAGGAGA 3499 0.0e+00 TGGAATGGAA 101731 0.0e+00 CGGAAGAGCG 228471 0.0e+00
GCTCACTGCA 163015 0.0e+00 TCCATTCGAT 36875 0.0e+00 ATGGAATGGA 20773 0.0e+00 CCCAGCTACT 3494 0.0e+00 ATGGAATGGA 100732 0.0e+00 GGAAGAGCGG 221419 0.0e+00
AAAGAAAAAA 162921 0.0e+00 ATCGAATGGA 36844 0.0e+00 GGAGGCTGAG 20619 0.0e+00 AATGGAATGG 3441 0.0e+00 GGAATGGAAT 100031 0.0e+00 GAAGAGCGGT 210096 0.0e+00
AGTGCAGTGG 158190 0.0e+00 CGAATGGAAT 36734 0.0e+00 AATGGAATGG 20471 0.0e+00 GGCAGGAGAA 3429 0.0e+00 AATGGAATGG 99340 0.0e+00 AAGAGCGGTT 200794 0.0e+00