Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.
Mean base quality of reads with low and high mapping quality.
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mer | Q | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | MAPQ >= 30 | 10.8 | 10.5 | 9.7 | 9.2 | 9.3 | 9.4 | 9.4 | 9.2 | 9.1 | 9.3 | 9.4 | 9.3 | 9.2 | 9.1 | 9.0 | 8.9 | 8.8 | 8.8 | 8.8 | 8.8 | 8.7 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.4 | 8.5 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 8.6 | 8.6 |
| AA | MAPQ >= 20 | 9.7 | 9.3 | 8.6 | 8.1 | 8.3 | 8.3 | 8.3 | 8.1 | 8.1 | 8.3 | 8.4 | 8.3 | 8.2 | 8.0 | 7.9 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.9 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 8.0 | 8.0 | 8.0 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.3 | 8.3 | 8.2 | 8.2 | 8.2 | 8.1 | 8.2 | 8.2 | 8.1 | 8.2 |
| AA | MAPQ >= 10 | 9.3 | 9.1 | 8.3 | 7.8 | 8.0 | 8.0 | 8.0 | 7.8 | 7.8 | 8.1 | 8.2 | 8.1 | 7.9 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.7 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.6 | 7.7 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.6 | 7.6 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 8.0 | 8.1 | 8.0 | 8.0 | 8.1 | 8.0 | 8.1 | 8.1 | 8.3 | 8.2 | 8.3 | 8.3 | 8.4 | 8.3 | 8.3 | 8.3 | 8.4 | 8.4 | 8.5 |
| AA | MAPQ >= 3 | 10.3 | 9.9 | 9.1 | 8.6 | 8.7 | 8.7 | 8.9 | 8.6 | 8.9 | 9.2 | 9.2 | 9.0 | 8.6 | 8.6 | 8.4 | 8.4 | 8.4 | 8.4 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.1 | 8.1 | 8.2 | 8.1 | 8.2 | 8.2 | 8.3 | 8.4 | 8.3 | 8.4 | 8.5 | 8.6 | 8.4 | 8.4 | 8.2 | 8.3 | 8.4 | 8.1 | 8.2 | 8.4 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.6 | 8.5 | 8.5 | 8.6 | 8.7 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.8 | 8.8 | 8.9 | 8.8 | 8.9 | 9.0 | 8.9 |
| AA | MAPQ < 3 | 10.1 | 9.9 | 9.0 | 8.5 | 8.7 | 8.8 | 8.8 | 8.5 | 8.5 | 8.8 | 8.9 | 8.9 | 8.7 | 8.5 | 8.4 | 8.4 | 8.4 | 8.3 | 8.2 | 8.2 | 8.2 | 8.2 | 8.3 | 8.3 | 8.4 | 8.3 | 8.2 | 8.3 | 8.2 | 8.2 | 8.2 | 8.2 | 8.3 | 8.3 | 8.3 | 8.3 | 8.4 | 8.4 | 8.3 | 8.2 | 8.3 | 8.3 | 8.2 | 8.3 | 8.3 | 8.4 | 8.4 | 8.4 | 8.3 | 8.3 | 8.4 | 8.4 | 8.4 | 8.4 | 8.5 | 8.5 | 8.5 | 8.5 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.5 | 8.5 | 8.5 | 8.5 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.6 | 8.5 |
| AA | Unmapped | 10.1 | 9.6 | 8.8 | 8.4 | 8.7 | 8.8 | 13.0 | 8.7 | 8.6 | 8.9 | 9.1 | 9.3 | 9.4 | 9.0 | 9.1 | 9.1 | 9.0 | 9.0 | 8.7 | 8.9 | 9.1 | 9.2 | 9.2 | 13.3 | 9.2 | 9.2 | 9.0 | 9.0 | 8.8 | 9.0 | 9.2 | 9.2 | 9.2 | 9.0 | 9.1 | 9.2 | 9.2 | 9.1 | 8.9 | 9.0 | 9.0 | 9.0 | 8.8 | 8.7 | 8.7 | 8.8 | 8.7 | 8.6 | 8.3 | 8.4 | 8.5 | 8.5 | 8.4 | 8.2 | 8.3 | 8.4 | 8.4 | 8.3 | 8.2 | 8.2 | 8.3 | 8.2 | 8.1 | 8.1 | 8.2 | 8.3 | 12.2 | 12.3 | 12.2 | 12.2 | 12.1 | 11.8 | 11.2 | 10.7 |
| AC | MAPQ >= 30 | 5.0 | 4.8 | 5.0 | 5.0 | 5.2 | 5.0 | 5.2 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 |
| AC | MAPQ >= 20 | 5.1 | 4.8 | 4.9 | 5.0 | 5.2 | 5.1 | 5.2 | 4.9 | 5.0 | 5.0 | 5.1 | 5.0 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.3 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 |
| AC | MAPQ >= 10 | 4.8 | 4.7 | 4.9 | 4.9 | 5.2 | 5.0 | 5.3 | 4.9 | 5.0 | 4.9 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 4.9 | 5.0 | 5.2 | 5.0 | 5.1 | 4.9 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.0 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.3 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.4 | 5.3 | 5.4 | 5.4 | 5.3 | 5.3 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 |
| AC | MAPQ >= 3 | 4.8 | 4.8 | 5.0 | 5.0 | 5.2 | 5.0 | 5.2 | 4.9 | 5.1 | 5.0 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.3 | 5.1 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.2 | 5.2 | 5.3 | 5.0 | 5.0 | 4.9 | 5.0 | 5.1 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.0 | 5.3 | 5.1 | 5.2 | 5.2 |
| AC | MAPQ < 3 | 4.9 | 4.8 | 5.0 | 5.0 | 5.2 | 5.1 | 5.2 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 |
| AC | Unmapped | 5.4 | 4.8 | 4.9 | 4.9 | 5.1 | 4.8 | 5.0 | 4.7 | 4.8 | 4.7 | 4.8 | 4.7 | 5.0 | 4.6 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.5 | 4.6 | 4.6 | 4.5 | 4.4 | 4.5 | 4.6 | 4.6 | 4.5 | 4.5 | 4.4 | 4.5 | 4.5 | 8.6 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.3 | 4.4 | 4.3 | 4.4 | 4.4 | 4.5 | 4.4 | 4.5 | 4.3 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.6 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.5 | 4.6 | 4.6 |
| AG | MAPQ >= 30 | 8.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.4 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.3 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 |
| AG | MAPQ >= 20 | 8.7 | 7.5 | 7.4 | 7.5 | 7.4 | 7.3 | 7.0 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.5 | 7.3 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.1 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 |
| AG | MAPQ >= 10 | 8.6 | 7.4 | 7.1 | 7.4 | 7.3 | 7.1 | 6.9 | 7.0 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.1 | 7.5 | 7.2 | 7.4 | 7.4 | 7.2 | 7.4 | 7.3 | 7.4 | 7.2 | 7.2 | 7.4 | 7.2 | 7.1 | 7.3 | 7.2 | 7.1 | 7.2 | 7.3 | 7.2 | 7.3 | 7.1 | 7.2 | 7.2 | 7.4 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.2 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.5 | 7.3 | 7.3 |
| AG | MAPQ >= 3 | 8.1 | 6.9 | 7.0 | 7.1 | 7.0 | 7.0 | 6.8 | 6.8 | 6.9 | 7.0 | 7.1 | 7.0 | 7.1 | 7.0 | 7.2 | 7.1 | 7.1 | 7.2 | 7.0 | 7.0 | 7.1 | 7.0 | 7.3 | 7.1 | 7.0 | 6.9 | 7.0 | 7.1 | 7.0 | 7.2 | 6.9 | 7.1 | 7.2 | 7.0 | 6.8 | 6.9 | 6.9 | 6.8 | 6.9 | 7.0 | 6.7 | 6.7 | 6.7 | 6.8 | 6.8 | 7.0 | 7.0 | 7.0 | 7.2 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.1 | 6.9 | 7.0 | 7.1 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.3 | 7.1 | 7.0 | 6.8 |
| AG | MAPQ < 3 | 8.3 | 7.3 | 7.1 | 7.3 | 7.2 | 7.1 | 6.8 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.1 | 7.0 |
| AG | Unmapped | 7.7 | 6.6 | 6.6 | 6.5 | 6.6 | 6.3 | 6.2 | 10.3 | 6.2 | 10.2 | 6.2 | 6.2 | 6.3 | 6.1 | 6.2 | 6.1 | 6.2 | 10.2 | 6.3 | 6.0 | 10.1 | 6.0 | 6.1 | 6.1 | 6.2 | 6.1 | 6.3 | 6.3 | 6.5 | 6.2 | 10.3 | 6.2 | 6.3 | 6.1 | 6.2 | 6.1 | 6.2 | 10.1 | 6.2 | 6.0 | 6.3 | 6.0 | 6.1 | 6.0 | 6.1 | 6.0 | 6.1 | 6.0 | 6.3 | 6.2 | 6.3 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.4 | 6.3 |
| AT | MAPQ >= 30 | 9.0 | 7.8 | 8.1 | 7.6 | 7.6 | 7.4 | 7.6 | 7.4 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 |
| AT | MAPQ >= 20 | 8.3 | 7.1 | 7.3 | 6.8 | 6.8 | 6.8 | 6.9 | 6.7 | 6.5 | 6.5 | 6.6 | 6.4 | 6.6 | 6.5 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.1 | 6.1 | 6.2 | 6.2 |
| AT | MAPQ >= 10 | 8.1 | 7.1 | 7.3 | 6.8 | 6.8 | 6.7 | 6.9 | 6.7 | 6.3 | 6.4 | 6.5 | 6.5 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.2 | 6.4 | 6.3 | 6.3 | 6.3 | 6.1 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.3 | 6.1 | 6.1 | 6.2 | 6.2 | 6.3 | 6.3 |
| AT | MAPQ >= 3 | 8.8 | 7.7 | 7.9 | 7.4 | 7.3 | 7.3 | 7.5 | 7.2 | 6.9 | 7.0 | 7.1 | 7.1 | 7.0 | 6.9 | 6.8 | 6.9 | 6.8 | 6.8 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.9 | 6.8 | 6.9 | 6.7 | 6.8 | 6.8 | 6.7 | 6.7 | 6.8 | 7.0 | 7.1 | 6.9 | 7.0 | 6.9 | 7.1 | 6.8 | 7.0 | 6.9 | 7.0 | 6.9 | 6.8 | 6.7 | 6.7 | 6.7 | 6.6 | 6.8 | 6.9 | 6.7 | 6.8 | 6.7 | 6.6 | 6.8 | 6.7 | 6.8 | 6.9 | 6.8 | 6.7 | 6.8 | 6.7 | 6.9 | 6.8 | 6.9 | 6.7 | 6.6 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 7.0 | 7.1 |
| AT | MAPQ < 3 | 8.6 | 7.6 | 7.9 | 7.2 | 7.3 | 7.2 | 7.4 | 7.2 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.9 | 6.8 | 6.9 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.9 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.9 | 6.8 | 6.9 | 6.8 | 6.9 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.9 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.8 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 |
| AT | Unmapped | 8.8 | 11.7 | 7.6 | 7.0 | 6.9 | 7.0 | 7.1 | 6.8 | 6.5 | 6.4 | 6.7 | 6.3 | 6.8 | 6.3 | 6.2 | 6.4 | 6.4 | 6.3 | 6.1 | 5.9 | 6.1 | 6.2 | 6.0 | 5.9 | 9.9 | 6.1 | 6.1 | 6.0 | 5.7 | 5.7 | 6.0 | 6.0 | 5.9 | 5.8 | 5.7 | 5.9 | 5.9 | 5.8 | 5.7 | 5.6 | 5.8 | 5.8 | 9.9 | 5.6 | 5.6 | 5.7 | 5.7 | 5.6 | 5.6 | 9.6 | 5.8 | 5.8 | 5.7 | 5.6 | 5.6 | 5.8 | 5.8 | 5.7 | 5.6 | 5.5 | 5.8 | 5.7 | 5.7 | 5.6 | 5.6 | 5.8 | 5.8 | 5.8 | 5.7 | 5.7 | 5.9 | 5.9 | 6.0 | 5.9 |
| CA | MAPQ >= 30 | 8.4 | 6.4 | 7.0 | 7.3 | 7.1 | 7.4 | 7.1 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 |
| CA | MAPQ >= 20 | 8.5 | 6.4 | 7.1 | 7.4 | 7.2 | 7.6 | 7.2 | 7.7 | 7.7 | 7.7 | 7.5 | 7.6 | 7.5 | 7.6 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.8 | 7.7 | 7.7 | 7.6 | 7.8 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.6 | 7.5 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.8 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 |
| CA | MAPQ >= 10 | 8.5 | 6.3 | 7.2 | 7.5 | 7.3 | 7.6 | 7.1 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.9 | 7.7 | 7.7 | 7.8 | 7.9 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 7.7 | 7.9 | 7.9 | 7.9 | 8.0 | 7.8 | 7.9 | 7.8 | 7.7 | 7.9 | 7.7 | 8.0 | 7.8 | 7.8 | 7.8 | 7.9 | 7.7 | 7.9 | 7.7 | 7.9 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 8.0 | 7.8 | 7.8 | 7.9 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 |
| CA | MAPQ >= 3 | 8.5 | 6.4 | 7.2 | 7.4 | 7.3 | 7.9 | 7.3 | 7.9 | 7.8 | 8.0 | 7.6 | 7.6 | 7.7 | 7.5 | 7.7 | 7.6 | 7.6 | 7.5 | 7.6 | 7.8 | 7.6 | 7.8 | 7.7 | 7.8 | 7.6 | 7.7 | 7.9 | 7.9 | 7.9 | 7.8 | 8.0 | 8.0 | 7.9 | 7.7 | 7.9 | 7.9 | 7.9 | 7.7 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.8 | 7.7 | 7.6 | 7.7 | 7.6 | 7.5 | 7.7 | 7.6 | 7.6 | 7.7 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.7 | 7.5 | 7.6 | 7.6 | 7.5 | 7.3 | 7.6 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.7 |
| CA | MAPQ < 3 | 8.6 | 6.5 | 7.2 | 7.5 | 7.3 | 7.7 | 7.2 | 7.7 | 7.7 | 7.8 | 7.6 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 |
| CA | Unmapped | 7.5 | 6.0 | 6.5 | 6.7 | 6.6 | 6.9 | 6.4 | 6.7 | 6.7 | 6.9 | 6.6 | 6.7 | 6.2 | 6.5 | 6.5 | 6.5 | 10.6 | 6.4 | 6.3 | 10.6 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.1 | 6.3 | 6.2 | 6.2 | 6.0 | 6.1 | 6.2 | 6.2 | 6.0 | 6.0 | 6.0 | 6.2 | 6.1 | 6.0 | 6.0 | 6.1 | 6.2 | 6.1 | 6.0 | 6.0 | 6.2 | 6.4 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.1 | 6.1 | 6.1 | 6.3 |
| CC | MAPQ >= 30 | 5.1 | 4.5 | 4.9 | 4.8 | 5.1 | 5.3 | 5.4 | 5.6 | 5.4 | 5.4 | 5.5 | 5.5 | 5.6 | 5.7 | 5.7 | 5.7 | 5.8 | 5.9 | 5.9 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 |
| CC | MAPQ >= 20 | 5.4 | 5.0 | 5.3 | 5.3 | 5.6 | 5.9 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.4 | 6.3 | 6.3 | 6.4 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.5 | 6.4 | 6.5 | 6.4 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.7 | 6.6 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 7.0 | 7.0 | 7.1 |
| CC | MAPQ >= 10 | 5.4 | 4.9 | 5.3 | 5.2 | 5.5 | 5.8 | 5.9 | 6.1 | 6.1 | 6.1 | 6.0 | 5.9 | 5.9 | 6.3 | 6.2 | 6.4 | 6.5 | 6.7 | 6.6 | 6.5 | 6.5 | 6.7 | 6.6 | 6.4 | 6.5 | 6.5 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.5 | 6.6 | 6.6 | 6.7 | 6.6 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.9 | 6.7 | 6.9 | 7.0 | 6.9 | 6.9 | 7.0 | 7.0 | 7.1 | 7.0 | 6.8 | 6.9 | 7.1 | 7.1 | 7.2 |
| CC | MAPQ >= 3 | 5.1 | 4.6 | 4.9 | 5.0 | 5.3 | 5.5 | 5.7 | 5.9 | 5.9 | 5.8 | 5.7 | 5.7 | 5.6 | 6.0 | 5.8 | 6.0 | 6.2 | 6.3 | 6.4 | 6.2 | 6.2 | 6.1 | 5.9 | 6.0 | 6.1 | 6.1 | 6.1 | 6.2 | 6.1 | 6.1 | 6.0 | 5.9 | 6.0 | 6.1 | 6.2 | 6.1 | 6.1 | 6.0 | 6.1 | 6.2 | 6.3 | 6.3 | 6.3 | 6.7 | 6.7 | 6.7 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.3 | 6.3 | 6.3 | 6.3 | 6.1 | 6.2 | 6.4 | 6.6 | 6.8 |
| CC | MAPQ < 3 | 5.3 | 4.8 | 5.1 | 5.1 | 5.4 | 5.6 | 5.7 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 6.1 | 6.0 | 6.1 | 6.1 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.5 | 6.5 |
| CC | Unmapped | 4.8 | 4.6 | 4.8 | 4.8 | 5.1 | 5.1 | 5.1 | 5.3 | 5.3 | 5.3 | 5.2 | 5.0 | 5.1 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.5 | 5.5 | 5.4 | 5.4 | 5.4 | 5.5 | 5.4 | 5.4 | 5.4 | 9.5 | 5.5 | 5.5 | 5.5 | 5.4 | 5.6 | 9.8 | 5.8 | 5.8 | 5.8 | 6.0 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.4 | 6.4 | 6.4 | 6.5 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 10.9 | 6.9 | 6.8 | 6.8 | 6.7 | 6.8 | 6.9 | 6.9 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.8 | 6.7 | 6.7 | 6.9 | 6.8 | 6.7 | 6.7 | 6.8 | 7.0 |
| CG | MAPQ >= 30 | 0.9 | 0.6 | 0.8 | 0.9 | 0.9 | 1.0 | 0.9 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.0 | 1.0 | 1.0 | 1.1 | 1.1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.2 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 |
| CG | MAPQ >= 20 | 1.4 | 1.0 | 1.2 | 1.5 | 1.5 | 1.6 | 1.5 | 1.8 | 1.7 | 1.6 | 1.6 | 1.7 | 1.7 | 1.6 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.6 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 |
| CG | MAPQ >= 10 | 1.5 | 1.1 | 1.3 | 1.6 | 1.6 | 1.8 | 1.5 | 1.9 | 1.8 | 1.6 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.7 | 1.7 |
| CG | MAPQ >= 3 | 1.3 | 0.9 | 1.2 | 1.4 | 1.4 | 1.5 | 1.4 | 1.7 | 1.5 | 1.3 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 1.6 | 1.5 | 1.5 | 1.5 | 1.7 | 1.6 | 1.7 | 1.7 | 1.6 | 1.6 | 1.5 | 1.5 | 1.5 | 1.6 | 1.7 | 1.6 | 1.6 | 1.5 | 1.4 | 1.6 | 1.5 | 1.6 | 1.6 | 1.6 | 1.7 | 1.6 | 1.5 | 1.5 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.6 | 1.7 | 1.5 | 1.5 | 1.5 | 1.5 | 1.7 | 1.6 | 1.6 | 1.5 | 1.5 | 1.4 | 1.5 | 1.5 | 1.6 | 1.6 | 1.6 | 1.6 | 1.4 | 1.5 |
| CG | MAPQ < 3 | 1.3 | 1.0 | 1.2 | 1.4 | 1.4 | 1.6 | 1.4 | 1.7 | 1.6 | 1.5 | 1.5 | 1.6 | 1.6 | 1.6 | 1.5 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.5 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.6 |
| CG | Unmapped | 2.0 | 1.5 | 2.0 | 6.4 | 2.2 | 2.5 | 2.1 | 2.6 | 2.6 | 2.4 | 2.4 | 6.8 | 2.5 | 2.5 | 2.4 | 2.4 | 2.4 | 2.5 | 2.5 | 2.5 | 2.5 | 2.5 | 2.4 | 2.5 | 2.5 | 2.5 | 2.5 | 2.6 | 6.8 | 2.7 | 2.6 | 2.6 | 2.6 | 2.6 | 6.7 | 2.6 | 2.6 | 2.6 | 2.7 | 2.6 | 2.7 | 2.6 | 2.6 | 2.7 | 2.7 | 2.7 | 6.8 | 2.7 | 2.8 | 2.8 | 2.8 | 2.8 | 2.9 | 6.9 | 2.9 | 2.8 | 2.8 | 2.8 | 2.9 | 2.9 | 2.9 | 2.9 | 3.0 | 3.0 | 2.9 | 2.9 | 2.9 | 2.9 | 3.0 | 3.0 | 3.0 | 3.0 | 3.0 | 3.1 |
| CT | MAPQ >= 30 | 8.1 | 6.5 | 6.8 | 7.0 | 6.9 | 7.2 | 7.2 | 7.4 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 |
| CT | MAPQ >= 20 | 8.0 | 6.5 | 6.9 | 7.0 | 6.8 | 7.2 | 7.2 | 7.4 | 7.1 | 7.2 | 7.2 | 7.5 | 7.3 | 7.3 | 7.5 | 7.4 | 7.3 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.5 | 7.5 | 7.5 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 |
| CT | MAPQ >= 10 | 8.0 | 6.5 | 6.8 | 7.0 | 6.8 | 7.1 | 7.1 | 7.4 | 7.0 | 7.2 | 7.2 | 7.5 | 7.3 | 7.3 | 7.5 | 7.4 | 7.3 | 7.5 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.5 | 7.3 | 7.4 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.5 | 7.4 | 7.6 | 7.3 | 7.3 | 7.5 | 7.4 | 7.4 | 7.5 | 7.6 | 7.6 | 7.6 | 7.4 | 7.4 | 7.4 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.1 | 7.0 | 7.1 | 7.2 | 7.1 |
| CT | MAPQ >= 3 | 7.7 | 6.1 | 6.7 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.7 | 6.9 | 6.9 | 7.2 | 7.0 | 7.0 | 7.1 | 7.0 | 6.9 | 7.1 | 7.2 | 7.1 | 7.2 | 7.0 | 7.1 | 6.9 | 7.1 | 7.0 | 7.0 | 7.0 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.0 | 7.3 | 7.3 | 7.4 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.4 | 7.3 | 7.5 | 7.1 | 7.2 | 7.1 | 7.3 | 7.3 | 7.4 | 7.5 | 7.3 | 7.4 | 7.3 | 7.2 | 7.3 | 7.1 | 7.2 | 7.3 | 7.0 | 6.9 | 6.8 | 6.7 | 6.8 | 6.9 |
| CT | MAPQ < 3 | 7.8 | 6.3 | 6.6 | 6.8 | 6.6 | 6.9 | 7.0 | 7.2 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.0 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.3 | 7.1 | 7.2 | 7.1 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 |
| CT | Unmapped | 7.2 | 6.1 | 6.4 | 6.5 | 6.4 | 6.6 | 6.6 | 6.6 | 6.5 | 6.4 | 6.5 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.0 | 6.0 | 5.9 | 5.9 | 5.8 | 6.0 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.8 | 9.8 | 5.8 | 5.8 | 5.8 | 5.9 | 9.9 | 5.7 | 5.7 | 5.6 | 5.7 | 5.7 | 5.8 | 5.7 | 5.8 | 5.7 | 5.7 | 5.7 | 9.8 | 5.7 | 5.7 | 9.7 | 5.7 | 5.7 | 9.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.6 | 5.7 | 5.7 | 5.8 | 5.8 |
| GA | MAPQ >= 30 | 6.0 | 6.5 | 6.3 | 6.4 | 6.5 | 6.4 | 6.2 | 5.8 | 6.0 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 |
| GA | MAPQ >= 20 | 6.1 | 6.7 | 6.4 | 6.6 | 6.6 | 6.5 | 6.3 | 5.9 | 6.2 | 6.3 | 6.2 | 6.2 | 6.1 | 6.1 | 6.0 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.5 | 6.5 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.4 | 6.2 | 6.3 | 6.2 | 6.2 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 |
| GA | MAPQ >= 10 | 6.1 | 6.6 | 6.3 | 6.4 | 6.4 | 6.5 | 6.3 | 5.8 | 6.2 | 6.2 | 6.2 | 6.1 | 6.0 | 6.1 | 6.0 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.3 | 6.3 | 6.3 | 6.3 | 6.1 | 6.4 | 6.3 | 6.4 | 6.2 | 6.3 | 6.4 | 6.4 | 6.3 | 6.5 | 6.3 | 6.2 | 6.3 | 6.3 | 6.6 | 6.5 | 6.2 | 6.3 | 6.3 | 6.4 | 6.5 | 6.4 | 6.4 | 6.6 | 6.5 | 6.3 | 6.4 | 6.3 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.5 | 6.4 | 6.5 | 6.4 | 6.6 | 6.4 | 6.5 | 6.3 | 6.5 | 6.3 | 6.2 | 6.4 | 6.6 | 6.6 | 6.6 | 6.4 |
| GA | MAPQ >= 3 | 5.8 | 6.4 | 5.9 | 6.1 | 6.1 | 6.2 | 6.1 | 5.7 | 6.0 | 6.1 | 6.1 | 6.0 | 5.9 | 6.0 | 6.0 | 6.1 | 6.3 | 6.0 | 6.2 | 6.0 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.1 | 6.3 | 6.2 | 6.4 | 6.2 | 6.4 | 6.5 | 6.4 | 6.2 | 6.4 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.0 | 6.2 | 6.1 | 6.2 | 6.3 | 6.3 | 6.4 | 6.5 | 6.5 | 6.1 | 6.2 | 6.2 | 6.4 | 6.4 | 6.3 | 6.5 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.1 | 6.2 | 6.2 | 6.2 | 6.5 | 6.5 | 6.5 | 6.4 | 6.2 |
| GA | MAPQ < 3 | 6.2 | 6.8 | 6.4 | 6.6 | 6.6 | 6.5 | 6.5 | 5.9 | 6.2 | 6.4 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.3 | 6.5 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 |
| GA | Unmapped | 10.4 | 6.7 | 6.1 | 6.4 | 6.4 | 10.6 | 6.1 | 5.7 | 10.2 | 6.2 | 6.0 | 6.3 | 6.0 | 6.0 | 6.0 | 6.1 | 5.9 | 5.9 | 5.8 | 6.0 | 6.1 | 6.0 | 9.9 | 6.0 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 10.5 | 6.4 | 10.3 | 6.0 | 6.2 | 6.1 | 6.2 | 6.1 | 6.0 | 6.0 | 6.2 | 6.0 | 6.2 | 5.9 | 6.0 | 6.0 | 6.0 | 5.9 | 5.9 | 6.0 | 6.2 | 6.1 | 6.1 | 5.9 | 6.1 | 6.1 | 6.2 | 6.1 | 6.0 | 6.0 | 6.2 | 6.2 | 6.2 | 6.0 | 6.2 | 6.2 | 10.1 | 6.3 | 6.1 | 6.2 | 6.3 | 6.3 | 6.2 | 6.1 | 6.3 |
| GC | MAPQ >= 30 | 3.8 | 3.9 | 4.2 | 4.3 | 4.5 | 4.4 | 4.6 | 4.4 | 4.5 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 |
| GC | MAPQ >= 20 | 4.2 | 4.4 | 4.8 | 4.8 | 5.1 | 4.8 | 5.2 | 4.9 | 5.0 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.2 | 5.4 | 5.3 | 5.3 | 5.4 | 5.4 | 5.5 | 5.4 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.4 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.4 | 5.3 | 5.2 | 5.2 |
| GC | MAPQ >= 10 | 4.3 | 4.5 | 4.9 | 4.8 | 5.1 | 4.8 | 5.3 | 4.9 | 5.0 | 5.1 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.4 | 5.4 | 5.4 | 5.3 | 5.4 | 5.2 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.6 | 5.6 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.4 | 5.5 | 5.4 | 5.6 | 5.4 | 5.5 | 5.4 | 5.4 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.2 | 5.4 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.5 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.5 | 5.4 | 5.5 | 5.5 | 5.4 | 5.3 | 5.3 |
| GC | MAPQ >= 3 | 4.1 | 4.1 | 4.5 | 4.4 | 4.8 | 4.5 | 5.0 | 4.7 | 4.8 | 4.7 | 4.7 | 4.8 | 4.7 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.8 | 4.9 | 4.7 | 4.6 | 4.8 | 4.9 | 5.0 | 4.8 | 4.7 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.6 | 4.7 | 4.8 | 4.9 | 4.8 | 5.0 | 4.8 | 4.8 | 4.9 | 5.0 | 4.8 | 4.8 | 4.9 | 4.9 | 5.1 | 5.1 | 5.0 | 4.9 | 5.1 | 5.1 | 5.2 | 5.2 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 4.9 |
| GC | MAPQ < 3 | 4.0 | 4.1 | 4.4 | 4.4 | 4.7 | 4.5 | 4.8 | 4.6 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.1 | 5.0 | 4.9 | 4.9 |
| GC | Unmapped | 3.6 | 3.8 | 4.1 | 4.2 | 4.5 | 4.2 | 4.5 | 4.3 | 4.5 | 4.5 | 8.6 | 4.3 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 8.6 | 4.4 | 4.5 | 4.3 | 4.3 | 4.3 | 4.4 | 4.5 | 8.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.3 | 4.3 | 4.3 | 4.3 | 4.3 | 4.3 | 4.4 | 8.4 | 4.4 | 4.3 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.6 | 4.6 | 4.6 | 8.7 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.7 | 4.7 | 4.7 | 8.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.7 | 4.7 |
| GG | MAPQ >= 30 | 5.8 | 5.7 | 5.8 | 5.5 | 5.6 | 5.6 | 5.4 | 5.2 | 5.4 | 5.5 | 5.4 | 5.5 | 5.5 | 5.5 | 5.6 | 5.7 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 5.9 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 |
| GG | MAPQ >= 20 | 6.6 | 6.6 | 6.7 | 6.3 | 6.4 | 6.6 | 6.3 | 6.0 | 6.3 | 6.4 | 6.3 | 6.2 | 6.2 | 6.3 | 6.4 | 6.4 | 6.5 | 6.6 | 6.6 | 6.7 | 6.7 | 6.6 | 6.6 | 6.8 | 6.8 | 6.9 | 6.8 | 6.9 | 6.9 | 7.1 | 7.1 | 6.9 | 7.0 | 7.1 | 6.9 | 7.0 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.1 | 6.9 | 7.0 | 7.0 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.2 | 7.3 | 7.2 | 7.3 | 7.2 | 7.2 |
| GG | MAPQ >= 10 | 7.0 | 6.9 | 6.8 | 6.3 | 6.5 | 6.8 | 6.3 | 6.0 | 6.5 | 6.6 | 6.5 | 6.3 | 6.2 | 6.3 | 6.5 | 6.5 | 6.5 | 6.6 | 6.8 | 6.9 | 6.9 | 6.6 | 6.6 | 6.9 | 6.8 | 6.9 | 6.7 | 6.9 | 6.9 | 7.1 | 7.1 | 6.8 | 6.9 | 7.0 | 6.8 | 6.7 | 6.9 | 6.8 | 6.8 | 6.9 | 6.9 | 6.9 | 6.8 | 6.6 | 6.8 | 6.6 | 6.8 | 6.8 | 6.7 | 6.6 | 6.7 | 6.6 | 6.6 | 6.6 | 6.7 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.3 | 6.4 | 6.5 | 6.5 | 6.5 | 6.4 | 6.5 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 |
| GG | MAPQ >= 3 | 6.7 | 6.3 | 6.2 | 5.9 | 5.9 | 6.1 | 5.7 | 5.4 | 5.7 | 5.8 | 5.7 | 5.6 | 5.6 | 5.8 | 6.0 | 6.0 | 6.1 | 6.3 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.6 | 6.5 | 6.6 | 6.5 | 6.7 | 6.8 | 6.8 | 6.8 | 6.5 | 6.6 | 6.4 | 6.1 | 6.1 | 6.2 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.1 | 5.9 | 6.0 | 5.9 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.1 | 6.2 | 6.3 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.1 |
| GG | MAPQ < 3 | 6.4 | 6.2 | 6.2 | 5.9 | 6.0 | 6.1 | 5.7 | 5.5 | 5.8 | 5.9 | 5.8 | 5.8 | 5.8 | 5.9 | 6.0 | 6.0 | 6.0 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.2 | 6.2 | 6.1 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 |
| GG | Unmapped | 5.6 | 5.4 | 5.5 | 5.4 | 9.5 | 5.4 | 5.2 | 5.1 | 5.4 | 5.4 | 5.4 | 5.3 | 9.5 | 5.5 | 5.6 | 5.5 | 5.5 | 5.7 | 6.0 | 6.5 | 6.2 | 10.2 | 6.2 | 6.4 | 6.5 | 6.3 | 6.4 | 6.7 | 7.1 | 7.8 | 7.4 | 7.3 | 7.5 | 7.6 | 7.6 | 7.8 | 7.6 | 7.7 | 7.8 | 7.9 | 7.9 | 7.9 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.8 | 7.7 | 7.8 | 7.9 | 7.8 | 8.0 | 8.2 | 8.4 | 8.5 | 8.6 | 8.8 | 9.0 | 9.1 | 9.2 | 9.1 | 9.3 | 9.5 | 9.6 | 9.7 | 9.5 | 9.6 | 9.7 | 9.6 | 9.6 | 9.4 | 9.5 | 9.5 |
| GT | MAPQ >= 30 | 5.8 | 4.9 | 4.9 | 5.1 | 5.2 | 5.0 | 5.3 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 |
| GT | MAPQ >= 20 | 6.0 | 5.1 | 5.1 | 5.4 | 5.3 | 5.2 | 5.5 | 5.3 | 5.2 | 5.3 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 4.9 |
| GT | MAPQ >= 10 | 6.2 | 5.3 | 5.2 | 5.5 | 5.5 | 5.3 | 5.6 | 5.4 | 5.4 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.2 | 5.3 | 5.4 | 5.4 | 5.2 | 5.3 | 5.4 | 5.4 | 5.3 | 5.2 | 5.4 | 5.4 | 5.3 | 5.2 | 5.2 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.1 | 5.1 | 5.3 | 5.3 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.0 | 5.0 | 5.0 | 4.8 | 4.9 | 4.9 | 4.7 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.8 | 4.9 | 5.1 | 5.0 | 5.0 | 4.8 | 5.0 | 4.9 |
| GT | MAPQ >= 3 | 6.3 | 5.3 | 5.1 | 5.4 | 5.4 | 5.2 | 5.5 | 5.3 | 5.2 | 5.3 | 5.1 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.3 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.1 | 5.2 | 5.1 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.0 | 5.2 | 4.9 | 4.9 | 5.0 | 4.8 | 5.0 | 5.0 | 5.0 | 5.0 | 5.2 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 4.9 |
| GT | MAPQ < 3 | 6.1 | 5.1 | 5.0 | 5.2 | 5.3 | 5.1 | 5.4 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.2 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 |
| GT | Unmapped | 5.8 | 4.7 | 4.6 | 4.9 | 4.9 | 4.8 | 5.0 | 4.7 | 4.8 | 4.8 | 4.7 | 4.5 | 4.9 | 8.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.7 | 4.5 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.6 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 8.7 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 4.7 | 4.6 | 4.7 | 8.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.6 | 8.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.6 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.6 | 4.5 |
| TA | MAPQ >= 30 | 5.4 | 6.9 | 6.4 | 6.7 | 6.4 | 6.1 | 6.0 | 6.0 | 6.1 | 6.0 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.6 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 |
| TA | MAPQ >= 20 | 4.5 | 5.8 | 5.4 | 5.6 | 5.4 | 5.1 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.7 | 4.7 | 4.5 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.7 | 4.6 | 4.5 | 4.5 | 4.5 |
| TA | MAPQ >= 10 | 4.4 | 5.6 | 5.2 | 5.5 | 5.2 | 5.1 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.6 | 4.7 | 4.6 | 4.7 | 4.6 | 4.7 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.5 | 4.5 | 4.4 | 4.4 | 4.5 | 4.4 | 4.4 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 | 4.5 | 4.5 | 4.4 | 4.5 | 4.4 | 4.5 | 4.4 | 4.3 | 4.5 | 4.6 | 4.5 | 4.6 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.6 | 4.6 | 4.5 | 4.5 | 4.4 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.6 | 4.6 | 4.5 | 4.4 | 4.4 |
| TA | MAPQ >= 3 | 4.8 | 6.2 | 5.8 | 6.0 | 5.8 | 5.6 | 5.4 | 5.4 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.5 | 5.4 | 5.4 | 5.3 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.8 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.8 | 4.8 | 4.9 | 5.0 | 5.0 | 5.1 | 5.0 | 4.9 | 4.9 | 4.8 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.0 | 4.9 |
| TA | MAPQ < 3 | 4.6 | 6.0 | 5.5 | 5.8 | 5.5 | 5.3 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 |
| TA | Unmapped | 4.5 | 5.8 | 5.3 | 5.6 | 5.3 | 5.0 | 4.9 | 5.0 | 4.9 | 4.8 | 4.7 | 5.1 | 4.5 | 4.6 | 4.6 | 4.6 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.3 | 4.3 | 4.3 | 4.4 | 4.3 | 4.3 | 4.3 | 4.2 | 4.2 | 4.2 | 4.2 | 4.2 | 4.2 | 4.1 | 8.1 | 4.1 | 4.1 | 4.1 | 4.1 | 8.0 | 4.1 | 4.1 | 4.0 | 4.0 | 4.0 | 4.0 | 8.1 | 4.1 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.1 | 4.0 | 4.1 | 4.1 | 4.1 | 4.1 | 4.1 | 4.1 | 4.1 | 4.0 | 4.0 | 4.0 | 4.2 |
| TC | MAPQ >= 30 | 4.1 | 6.2 | 5.9 | 5.8 | 6.1 | 5.9 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| TC | MAPQ >= 20 | 4.1 | 6.4 | 6.2 | 6.1 | 6.4 | 6.0 | 6.6 | 6.6 | 6.5 | 6.3 | 6.5 | 6.3 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.2 | 6.1 | 6.3 | 6.2 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.5 | 6.5 | 6.4 | 6.3 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.3 |
| TC | MAPQ >= 10 | 4.1 | 6.5 | 6.3 | 6.2 | 6.5 | 6.1 | 6.7 | 6.6 | 6.7 | 6.4 | 6.6 | 6.4 | 6.7 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.4 | 6.3 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.5 | 6.3 | 6.2 | 6.4 | 6.3 | 6.6 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.8 | 6.6 | 6.6 | 6.4 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 6.5 | 6.6 | 6.6 | 6.6 | 6.7 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.2 |
| TC | MAPQ >= 3 | 4.1 | 6.5 | 6.2 | 6.3 | 6.3 | 6.0 | 6.5 | 6.3 | 6.3 | 6.1 | 6.4 | 6.3 | 6.5 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.6 | 6.4 | 6.4 | 6.2 | 6.1 | 6.2 | 6.2 | 6.5 | 6.3 | 6.5 | 6.4 | 6.3 | 6.5 | 6.2 | 6.3 | 6.4 | 6.8 | 6.6 | 6.6 | 6.4 | 6.5 | 6.5 | 6.4 | 6.6 | 6.4 | 6.6 | 6.5 | 6.6 | 6.4 | 6.5 | 6.4 | 6.5 | 6.5 | 6.3 | 6.3 | 6.1 | 6.0 | 6.1 | 6.1 | 6.3 | 6.1 | 6.0 | 5.9 | 5.9 | 5.8 | 5.8 | 5.9 | 6.0 |
| TC | MAPQ < 3 | 4.2 | 6.5 | 6.3 | 6.2 | 6.4 | 6.1 | 6.6 | 6.6 | 6.6 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 |
| TC | Unmapped | 4.3 | 6.5 | 10.7 | 6.4 | 6.4 | 6.2 | 6.5 | 6.6 | 6.4 | 6.3 | 6.1 | 6.1 | 6.0 | 6.2 | 6.0 | 10.1 | 5.9 | 6.1 | 6.0 | 5.9 | 5.7 | 5.8 | 5.9 | 5.8 | 5.7 | 5.7 | 5.6 | 5.8 | 5.7 | 5.6 | 5.5 | 5.7 | 5.7 | 5.8 | 5.7 | 5.7 | 5.7 | 5.9 | 5.8 | 5.7 | 5.6 | 5.7 | 6.0 | 10.1 | 5.9 | 9.8 | 5.8 | 5.9 | 5.9 | 5.8 | 5.7 | 5.8 | 5.8 | 5.8 | 5.7 | 9.6 | 5.7 | 5.9 | 9.9 | 5.7 | 5.6 | 5.7 | 5.7 | 5.8 | 5.6 | 5.6 | 5.6 | 5.8 | 5.8 | 5.7 | 5.6 | 5.8 | 6.0 | 6.1 |
| TG | MAPQ >= 30 | 5.8 | 7.5 | 7.3 | 7.7 | 7.4 | 7.5 | 7.0 | 7.6 | 7.6 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 |
| TG | MAPQ >= 20 | 6.1 | 7.9 | 7.7 | 8.0 | 7.8 | 7.8 | 7.3 | 8.0 | 7.9 | 7.6 | 7.6 | 7.7 | 7.7 | 7.8 | 7.6 | 7.9 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.9 | 8.0 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.5 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.4 | 7.5 | 7.4 |
| TG | MAPQ >= 10 | 6.2 | 7.9 | 7.8 | 8.1 | 7.9 | 7.9 | 7.3 | 8.2 | 8.1 | 7.7 | 7.6 | 7.7 | 7.9 | 8.0 | 7.8 | 8.0 | 8.0 | 7.8 | 7.9 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 8.0 | 7.8 | 8.0 | 7.9 | 7.9 | 8.1 | 8.1 | 7.9 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.1 | 8.0 | 7.9 | 7.8 | 8.0 | 8.0 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.6 | 7.8 | 7.7 | 7.8 | 7.9 | 7.8 | 7.7 | 7.7 | 7.8 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.9 | 7.8 | 7.6 | 7.6 | 7.6 | 7.6 |
| TG | MAPQ >= 3 | 6.0 | 7.7 | 7.4 | 7.8 | 7.8 | 7.7 | 7.2 | 7.8 | 7.8 | 7.4 | 7.3 | 7.5 | 7.7 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.7 | 7.8 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.9 | 7.8 | 7.7 | 7.7 | 7.7 | 7.9 | 7.8 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 7.8 | 7.8 | 7.9 | 7.9 | 7.9 | 7.7 | 7.9 | 7.7 | 7.4 | 7.6 | 7.6 | 7.7 | 7.9 | 7.6 | 7.7 | 7.4 | 7.6 | 7.6 | 7.6 | 7.7 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.8 | 8.1 | 7.8 | 7.8 | 7.7 | 7.6 | 7.7 |
| TG | MAPQ < 3 | 6.0 | 7.7 | 7.5 | 7.9 | 7.7 | 7.7 | 7.2 | 7.8 | 7.8 | 7.6 | 7.5 | 7.6 | 7.6 | 7.7 | 7.6 | 7.8 | 7.7 | 7.6 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.6 | 7.7 | 7.8 | 7.8 | 7.7 | 7.6 | 7.6 | 7.6 |
| TG | Unmapped | 5.1 | 6.8 | 6.7 | 7.0 | 6.7 | 6.6 | 6.3 | 6.9 | 6.8 | 6.6 | 6.5 | 6.6 | 6.3 | 6.7 | 6.5 | 6.5 | 6.6 | 6.7 | 6.8 | 6.5 | 6.3 | 6.5 | 6.5 | 6.7 | 6.5 | 10.6 | 6.7 | 6.7 | 6.9 | 6.5 | 6.3 | 6.5 | 6.5 | 6.5 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.2 | 6.4 | 6.5 | 6.3 | 6.2 | 6.3 | 6.4 | 6.4 | 6.4 | 10.3 | 6.4 | 6.4 | 6.5 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 10.2 | 6.4 | 6.3 | 6.4 | 10.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.0 | 6.1 | 6.2 | 6.3 |
| TT | MAPQ >= 30 | 7.4 | 9.8 | 9.3 | 9.0 | 8.8 | 8.9 | 9.3 | 9.5 | 9.5 | 9.4 | 9.3 | 9.3 | 9.3 | 9.3 | 9.1 | 9.0 | 8.9 | 8.8 | 8.7 | 8.7 | 8.7 | 8.8 | 8.8 | 8.9 | 8.8 | 8.9 | 8.8 | 8.8 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.5 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 |
| TT | MAPQ >= 20 | 7.1 | 9.4 | 8.9 | 8.6 | 8.2 | 8.4 | 8.7 | 8.7 | 8.6 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.4 | 8.2 | 8.1 | 8.0 | 7.9 | 7.8 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 7.9 | 7.9 | 7.8 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.6 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.6 | 7.6 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.1 | 8.1 | 8.2 | 8.1 | 8.2 | 8.1 | 8.0 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 |
| TT | MAPQ >= 10 | 7.4 | 9.6 | 9.2 | 8.8 | 8.5 | 8.5 | 8.7 | 8.8 | 8.6 | 8.5 | 8.5 | 8.6 | 8.6 | 8.5 | 8.3 | 8.0 | 8.0 | 7.9 | 7.8 | 7.6 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 7.1 | 7.1 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.3 | 7.4 | 7.3 | 7.2 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.6 |
| TT | MAPQ >= 3 | 7.6 | 10.0 | 9.7 | 9.3 | 9.0 | 9.2 | 9.3 | 9.3 | 9.2 | 9.1 | 9.1 | 9.2 | 9.3 | 9.1 | 9.1 | 8.7 | 8.7 | 8.6 | 8.6 | 8.4 | 8.5 | 8.5 | 8.4 | 8.4 | 8.4 | 8.6 | 8.5 | 8.4 | 8.3 | 8.2 | 8.2 | 8.1 | 8.2 | 8.4 | 8.5 | 8.3 | 8.3 | 8.4 | 8.3 | 8.2 | 8.2 | 8.3 | 8.3 | 8.3 | 8.3 | 8.1 | 8.1 | 8.0 | 7.8 | 7.8 | 7.9 | 7.9 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.1 | 8.2 | 8.4 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.1 | 8.2 | 8.2 | 8.2 | 8.4 |
| TT | MAPQ < 3 | 7.3 | 9.7 | 9.3 | 8.9 | 8.6 | 8.7 | 9.0 | 9.2 | 9.1 | 9.0 | 8.9 | 8.9 | 8.9 | 8.9 | 8.8 | 8.6 | 8.5 | 8.4 | 8.4 | 8.3 | 8.3 | 8.3 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.3 | 8.3 | 8.2 | 8.1 | 8.1 | 8.2 | 8.2 | 8.3 | 8.3 | 8.2 | 8.2 | 8.2 | 8.2 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.1 | 8.0 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 | 8.2 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 |
| TT | Unmapped | 6.5 | 9.3 | 9.1 | 8.8 | 8.8 | 9.2 | 9.8 | 10.0 | 10.1 | 10.2 | 10.5 | 10.6 | 10.8 | 11.1 | 15.3 | 11.3 | 11.5 | 11.6 | 11.5 | 11.7 | 11.8 | 12.1 | 12.2 | 12.1 | 11.8 | 11.7 | 11.6 | 11.5 | 11.2 | 10.9 | 10.9 | 11.2 | 11.1 | 11.0 | 11.0 | 11.0 | 11.1 | 11.1 | 10.9 | 10.9 | 14.9 | 11.1 | 11.0 | 10.9 | 10.7 | 10.7 | 10.8 | 10.6 | 10.1 | 9.9 | 9.9 | 9.9 | 9.8 | 9.5 | 9.4 | 9.4 | 9.5 | 13.5 | 9.2 | 8.9 | 8.9 | 8.9 | 8.9 | 12.7 | 8.6 | 8.6 | 8.7 | 8.6 | 8.5 | 8.3 | 8.4 | 8.6 | 8.6 | 8.5 |
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT AG CA CT |
AA TT AT AG TG |
AA TT AT AG TG |
AA TT TG AG AT |
AA TT AT AG TG |
AA TT TG AT CA |
AA TT AT CT AG |
TT AA TG AT CT |
TT AA TG CA CT |
TT AA CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
TT AA CA TG CT |
AA TT TG CA CT |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG CT |
AA TT TG CA AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA CA TG CT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG CA AT CT |
TT AA TG AG AT |
TT AA TG AG AT |
TT AA TG AG CA |
AA TT TG AG CA |
TT AA TG CA AG |
TT AA TG CT CA |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG AA CA CT |
TG TT CA AA CT |
TT TG CA AA CT |
TT TG AA CA CT |
TT AA TG CA AG |
TT CA TG AA CT |
TT AA TG CA AG |
TT TG AA CA AG |
TG TT AA CA AG |
TT TG CA AA AG |
TG TT CA AA AG |
TG CA AA TT AG |
TG CA AA TT AG |
TG CA AA TT AG |
TG AA TT CA AG |
TG TT AA CA CT |
TG TT CA AA CT |
TT TG AA CA AG |
TG TT AA CA AG |
TG TT AA CA CT |
TG TT AA CA CT |
TG CA AA TT AG |
AA TG TT CA AG |
TT TG AA CA CT |
TT TG CA AA CT |
TG TT AA CA CT |
TT TG CA AA CT |
TT AA TG CA AG |
TT AA TG CA CT |
TG AA TT CA AG |
AA CA TG TT AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG CA AT CT |
TT AA TG AG AT |
TT AA TG AT CA |
TT TG AA CA AG |
TT AA TG AG CA |
TT AA TG CA AG |
TT AA TG CA CT |
TT TG AA CA CT |
TT TG AA CA AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG CA AA CT |
TT TG CA AA CT |
TG TT CA AA CT |
TT TG CA AA CT |
TG TT CA AA CT |
TG CA TT AA CT |
TG TT CA CT AA |
TG CA TT AA CT |
TG TT CA AG AA |
CA TG TT AA CT |
TG AA CA TT AG |
TG CA TT AA AG |
TG CA TT AA CT |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA AA TT AG |
TG CA TT AA AG |
CA TG AA TT AG |
TG CA CT AA TT |
TG CA TT AA CT |
TG CA TT AA CT |
TG CA TT AA AG |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA TT AG |
TG CA AA CT TT |
TG CA AA CT TT |
TG CA AA CT TT |
CA TG AA TT CT |
TG CA AA AG CT |
AA CA TG CT TT |
TG CA AA CT TT |
CA AA TG CT AG |
AA CA TG CT AG |
CA TG AA CT TT |
AA TG CA CT TT |
CA AA TG CT TT |
TG CA AA TT CT |
AA TG CA CT AG |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA CT TG AG |
AA CA TG CT TT |
AA CA TG CT TT |
AA TG CA CT TT |
AA TG CA CT TT |
AA CA TG CT TT |
AA CA TG TT CT |
AA CA TG AG CT |
AA TG CA AG TT |
AA TG CA TT AG |
AA CA TG AG TT |
AA CA TG AG TT |
AA CA TG TT AG |
AA CA TT TG AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT CA AG CT |
TT AA AT TG AG |
TT AA AT TG CA |
TT AA TG CA AT |
TT AA TG CA AT |
TT AA CA TG AT |
TT AA AT CA TG |
TT AA CA TG AT |
TT AA CA TG AG |
AA TT CA TG AG |
AA TT CA TG AT |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
TT AA TG CA AT |
TT AA CA TG CT |
AA TT CA TG AT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA AT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT CA AG CT |
AA TT TG AT AG |
TT AA AT TG CA |
TT AA TG CA AG |
AA TT TG AT CA |
AA TT TG CA AT |
TT AA AT TG CA |
TT AA TG CA AT |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG AG |
AA TT TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
TT AA TG CA CT |
AA TT CA TG AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA CT |
TT AA CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
GA AA AT AG CA |
AT AA TT TG GA |
TC TT AA AT TG |
TT AA AT TG CA |
GG TT AA AT TG |
GA TT AA AT CA |
AA TT AT CT TC |
AG TT AA TG AT |
GA TT AA TG CA |
AG TT AA CA TG |
TT AA GC AT CA |
TT AA CG CA TG |
TT GG AA AT TG |
TT AA GT TG CA |
TT AA CA TG CT |
TT TC AA CA TG |
TT CA AA TG AT |
TT AG AA TG CA |
TT AA GC TG CA |
TT CA AA GG TG |
TT AG AA CA TG |
TT GG AA TG CA |
TT GA AA TG CA |
AA TT TG GG CA |
TT AT AA TG GG |
TT TG AA GG CA |
TT AA GC TG GG |
TT CC AA TG GG |
TT AA GG TG CG |
TT GA AA GG TG |
TT AG AA GG GA |
TT GA AA GG TG |
TT AA AC GG TG |
TT CC AA GG TG |
TT AA GG CG TG |
TT AA GT GG TG |
TT AA TA GG TG |
TT AG AA GG TG |
TT AA GC GG TG |
TT CT AA GG TG |
TT AA GG TG AG |
TT AA TA GG TG |
TT AT AA GG TG |
TT TC AA GG TG |
TT CT AA GG CC |
TT TC AA GG CC |
TT AA GG CG CC |
TT GT AA GG CC |
TT AA TA GG CC |
TT AT AA GG CC |
TG TT AA GG CC |
TT GC AA GG CC |
CC TT AA GG TG |
TT AA GG CG CC |
TT GT GG AA CC |
TC TT GG AA CC |
CT TT GG AA CC |
TT GG AA CC TG |
TC TT GG AA CC |
CT GG TT AA CC |
TG GG TT AA CC |
GG TT GC AA CC |
CT GG TT AA CC |
TT GG AA CC TG |
TG GG TT AA CC |
GA GG TT AA CC |
AA GG TT CC GA |
AA GG TT CC TG |
AA GG TT CC TG |
AA GG TT CC GA |
AA GG TT CC GA |
AA GG TT CC GA |
AA GG TT CC AG |
AA GG TT CC GA |
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 | Unmapped | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value |
| TGTAATCCCA | 759152 | 0.0e+00 | TTTTTTTTTT | 156997 | 0.0e+00 | GGAGGCTGAG | 55744 | 0.0e+00 | CTCCTGACCT | 12119 | 0.0e+00 | GGAGGCTGAG | 100699 | 0.0e+00 | TTTTTTTTTT | 2595334 | 0.0e+00 |
| GCTGGGATTA | 508703 | 0.0e+00 | AAAAAAAAAA | 134265 | 0.0e+00 | GAGGCTGAGG | 54978 | 0.0e+00 | GAGGCTGAGG | 11936 | 0.0e+00 | GAGGCTGAGG | 99868 | 0.0e+00 | AAAAAAAAAA | 1241512 | 0.0e+00 |
| GGGATTACAG | 506624 | 0.0e+00 | GGAGGCTGAG | 58781 | 0.0e+00 | AGGCTGAGGC | 51665 | 0.0e+00 | GGAGGCTGAG | 11932 | 0.0e+00 | AGGCTGAGGC | 92454 | 0.0e+00 | ATTCCATTCC | 261181 | 0.0e+00 |
| CACTTTGGGA | 484693 | 0.0e+00 | GAGGCTGAGG | 58090 | 0.0e+00 | GGCTGAGGCA | 48757 | 0.0e+00 | AGGCTGAGGC | 11378 | 0.0e+00 | AGGCAGGAGA | 87094 | 0.0e+00 | GGGGGGGGGG | 261110 | 0.0e+00 |
| ACTTTGGGAG | 483625 | 0.0e+00 | AGGCTGAGGC | 52616 | 0.0e+00 | GCTGAGGCAG | 47870 | 0.0e+00 | GGCTGAGGCA | 10796 | 0.0e+00 | GGCTGAGGCA | 86798 | 0.0e+00 | TTCCATTCCA | 259346 | 0.0e+00 |
| AGCACTTTGG | 467360 | 0.0e+00 | TAATCCCAGC | 50027 | 0.0e+00 | CTGAGGCAGG | 46895 | 0.0e+00 | TCCTGACCTC | 10759 | 0.0e+00 | TCCCAGCTAC | 86765 | 0.0e+00 | CCATTCCATT | 254209 | 0.0e+00 |
| CAGCACTTTG | 456993 | 0.0e+00 | TGTAATCCCA | 48362 | 0.0e+00 | TCCCAGCTAC | 46870 | 0.0e+00 | GCTGAGGCAG | 10644 | 0.0e+00 | CCCAGCTACT | 85622 | 0.0e+00 | TCCATTCCAT | 253173 | 0.0e+00 |
| CCAGCACTTT | 443302 | 0.0e+00 | TCCCAGCTAC | 48015 | 0.0e+00 | CTCAGCCTCC | 46498 | 0.0e+00 | CTGAGGCAGG | 10589 | 0.0e+00 | GGCAGGAGAA | 85391 | 0.0e+00 | CATTCCATTC | 247550 | 0.0e+00 |
| TGGGAGGCTG | 346984 | 0.0e+00 | GGCTGAGGCA | 47896 | 0.0e+00 | CCCAGCTACT | 46387 | 0.0e+00 | TCCCAGCTAC | 10337 | 0.0e+00 | GCTGAGGCAG | 85240 | 0.0e+00 | GGAATGGAAT | 239901 | 0.0e+00 |
| TTGGGAGGCT | 337185 | 0.0e+00 | GTAATCCCAG | 47688 | 0.0e+00 | CCTCAGCCTC | 46147 | 0.0e+00 | CCCAGCTACT | 10283 | 0.0e+00 | CTCAGCCTCC | 83928 | 0.0e+00 | TGGAATGGAA | 239077 | 0.0e+00 |
| CTGCAACCTC | 335714 | 0.0e+00 | CCCAGCTACT | 47323 | 0.0e+00 | AAAAAAAAAA | 45837 | 0.0e+00 | AGGCAGGAGA | 10233 | 0.0e+00 | CTGAGGCAGG | 83864 | 0.0e+00 | AATGGAATGG | 236082 | 0.0e+00 |
| TGCTGGGATT | 333189 | 0.0e+00 | CTGTAATCCC | 46881 | 0.0e+00 | AGGCAGGAGA | 43700 | 0.0e+00 | CCTCAGCCTC | 10199 | 0.0e+00 | CCTCAGCCTC | 83651 | 0.0e+00 | ATGGAATGGA | 235196 | 0.0e+00 |
| CCCAAAGTGC | 326472 | 0.0e+00 | CTCAGCCTCC | 46521 | 0.0e+00 | TGAGGCAGGA | 43396 | 0.0e+00 | CTCAGCCTCC | 10115 | 0.0e+00 | TCTCCTGCCT | 81877 | 0.0e+00 | GAATGGAATG | 227735 | 0.0e+00 |
| AGTGCTGGGA | 317843 | 0.0e+00 | GCTGAGGCAG | 46049 | 0.0e+00 | GGCAGGAGAA | 42944 | 0.0e+00 | GGCAGGAGAA | 9975 | 0.0e+00 | TTCTCCTGCC | 81527 | 0.0e+00 | ACACACACAC | 216215 | 0.0e+00 |
| GTGCTGGGAT | 315754 | 0.0e+00 | CCTCAGCCTC | 46030 | 0.0e+00 | GCCTCAGCCT | 42919 | 0.0e+00 | TGAGGCAGGA | 9892 | 0.0e+00 | CTCCTGACCT | 81476 | 0.0e+00 | CACACACACA | 214904 | 0.0e+00 |
| TGTTGCCCAG | 306967 | 0.0e+00 | CCTGTAATCC | 45946 | 0.0e+00 | GAGGCAGGAG | 42741 | 0.0e+00 | GAGGCAGGAG | 9733 | 0.0e+00 | TGAGGCAGGA | 78654 | 0.0e+00 | CCCCCCCCCC | 212302 | 0.0e+00 |
| CATGCCTGTA | 289081 | 0.0e+00 | CTGAGGCAGG | 44506 | 0.0e+00 | CTCACTGCAA | 42096 | 0.0e+00 | GCCTCAGCCT | 9698 | 0.0e+00 | GAGGCAGGAG | 78583 | 0.0e+00 | GAGAGAGAGA | 209691 | 0.0e+00 |
| ATTTTTTTTT | 286039 | 0.0e+00 | GCTCACTGCA | 43753 | 0.0e+00 | GCTCACTGCA | 41702 | 0.0e+00 | TCTCCTGCCT | 9378 | 0.0e+00 | GCCTCAGCCT | 77560 | 0.0e+00 | AGAGAGAGAG | 203569 | 0.0e+00 |
| AATCCCAGCT | 285514 | 0.0e+00 | AAATACAAAA | 42982 | 0.0e+00 | TAATCCCAGC | 41514 | 0.0e+00 | TTCTCCTGCC | 9329 | 0.0e+00 | GGGAGGCTGA | 76839 | 0.0e+00 | TGTGTGTGTG | 192579 | 0.0e+00 |
| TCCAGCCTGG | 285023 | 0.0e+00 | CTCACTGCAA | 42902 | 0.0e+00 | CTCCTGACCT | 41253 | 0.0e+00 | GGGAGGCTGA | 9121 | 0.0e+00 | GCTCACTGCA | 73795 | 0.0e+00 | GTGTGTGTGT | 192030 | 0.0e+00 |