Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.
Mean base quality of reads with low and high mapping quality.
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mer | Q | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | MAPQ >= 30 | 9.4 | 8.5 | 8.1 | 8.3 | 8.5 | 8.1 | 8.0 | 7.8 | 8.2 | 8.9 | 8.5 | 8.3 | 8.5 | 8.4 | 8.2 | 8.1 | 8.0 | 7.9 | 7.9 | 7.9 | 7.9 | 8.0 | 8.0 | 8.0 | 8.1 | 8.0 | 8.0 | 8.1 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 7.9 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 7.9 | 8.0 | 8.0 | 7.9 | 8.0 | 7.9 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 7.9 | 8.1 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 7.9 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 7.9 | 8.0 | 7.9 | 7.9 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 |
| AA | MAPQ >= 20 | 8.1 | 7.2 | 7.0 | 7.2 | 7.6 | 7.0 | 6.8 | 6.7 | 6.9 | 7.7 | 7.1 | 6.9 | 7.3 | 7.2 | 7.1 | 6.9 | 6.9 | 6.9 | 7.0 | 7.2 | 6.9 | 7.2 | 7.2 | 7.0 | 7.4 | 7.2 | 7.0 | 7.3 | 7.0 | 7.0 | 7.4 | 7.0 | 6.7 | 6.9 | 6.8 | 6.8 | 6.9 | 7.0 | 7.0 | 7.0 | 6.9 | 6.7 | 6.8 | 6.8 | 6.6 | 7.0 | 7.0 | 6.9 | 6.7 | 6.6 | 6.9 | 7.0 | 6.8 | 6.9 | 7.1 | 6.9 | 6.9 | 6.9 | 6.7 | 6.7 | 7.0 | 6.8 | 6.8 | 7.0 | 7.0 | 6.8 | 7.1 | 6.9 | 6.9 | 7.0 | 6.9 | 7.0 | 6.8 | 7.0 | 6.6 | 7.1 | 6.9 | 6.8 | 7.1 | 6.7 | 6.7 | 6.9 | 6.9 | 6.8 | 6.9 | 6.8 | 6.9 | 7.1 | 6.8 | 6.8 | 6.8 | 6.7 | 6.6 | 6.7 | 6.6 | 6.5 | 6.7 | 6.6 | 6.6 |
| AA | MAPQ < 3 | 7.0 | 6.5 | 6.3 | 6.5 | 6.5 | 6.0 | 6.1 | 5.8 | 6.1 | 6.8 | 6.3 | 6.3 | 6.5 | 6.5 | 6.2 | 6.2 | 6.1 | 5.9 | 6.0 | 5.9 | 5.8 | 6.0 | 6.0 | 6.1 | 6.2 | 6.0 | 5.9 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 | 5.8 | 6.0 | 5.9 | 5.8 | 6.0 | 5.9 | 5.8 | 5.9 | 5.9 | 5.8 | 5.9 | 6.0 | 5.9 | 6.0 | 5.8 | 5.7 | 5.9 | 5.8 | 5.8 | 5.9 | 5.9 | 5.7 | 5.9 | 5.9 | 5.9 | 6.1 | 6.1 | 5.9 | 6.1 | 6.0 | 5.9 | 6.1 | 5.9 | 5.8 | 6.1 | 6.0 | 5.9 | 6.1 | 6.0 | 5.9 | 6.0 | 5.9 | 5.7 | 6.0 | 5.9 | 5.8 | 5.9 | 5.9 | 5.7 | 5.9 | 5.9 | 5.7 | 5.9 | 5.9 | 5.7 | 6.0 | 5.8 | 5.8 | 5.8 | 5.7 | 5.6 | 5.8 | 5.9 | 5.5 |
| AC | MAPQ >= 30 | 4.7 | 5.1 | 4.8 | 4.8 | 5.2 | 5.1 | 5.2 | 4.9 | 4.7 | 5.2 | 5.2 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.4 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.3 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 |
| AC | MAPQ >= 20 | 4.7 | 5.3 | 4.9 | 4.9 | 5.2 | 5.0 | 5.3 | 4.9 | 4.6 | 5.3 | 5.1 | 5.1 | 4.8 | 5.1 | 5.2 | 5.1 | 5.3 | 5.2 | 5.2 | 5.4 | 5.2 | 5.1 | 5.4 | 5.3 | 5.1 | 5.2 | 5.2 | 5.3 | 5.3 | 5.1 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.2 | 5.4 | 5.1 | 5.2 | 5.3 | 5.3 | 5.2 | 5.2 | 5.0 | 5.0 | 5.3 | 5.1 | 5.1 | 5.3 | 5.2 | 5.3 | 5.4 | 5.1 | 5.2 | 5.4 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.3 | 5.1 | 5.1 | 5.2 | 5.4 | 5.1 | 5.4 | 5.3 | 5.1 | 5.4 | 5.0 | 5.3 | 5.3 | 5.4 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.3 | 5.2 | 5.2 | 5.1 | 5.4 | 5.1 | 5.2 | 5.4 | 5.3 | 5.2 | 5.4 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.0 |
| AC | MAPQ < 3 | 4.4 | 5.1 | 4.9 | 4.6 | 5.3 | 4.9 | 5.0 | 5.0 | 4.6 | 4.9 | 5.1 | 4.9 | 4.8 | 5.1 | 4.8 | 5.0 | 5.2 | 4.9 | 5.0 | 5.3 | 5.0 | 4.9 | 5.4 | 4.9 | 4.8 | 5.1 | 4.8 | 4.9 | 5.1 | 4.9 | 5.0 | 5.3 | 5.3 | 5.2 | 5.4 | 5.2 | 4.9 | 5.4 | 4.9 | 5.1 | 5.2 | 4.8 | 4.9 | 5.2 | 4.8 | 4.9 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 | 4.8 | 5.0 | 4.8 | 4.9 | 5.1 | 5.1 | 5.0 | 5.0 | 4.8 | 5.0 | 5.0 | 4.8 | 4.7 | 5.1 | 4.7 | 4.7 | 5.0 | 4.8 | 4.8 | 5.1 | 4.7 | 4.9 | 5.3 | 4.8 | 4.8 | 5.2 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 5.0 | 5.0 | 4.9 | 5.1 | 5.0 | 4.9 | 5.2 | 4.9 | 5.2 | 5.5 | 5.2 | 5.1 | 5.5 | 5.1 | 5.0 | 5.2 | 5.4 |
| AG | MAPQ >= 30 | 9.7 | 6.9 | 6.9 | 8.0 | 7.4 | 7.3 | 6.6 | 6.6 | 6.7 | 7.5 | 7.3 | 7.1 | 7.2 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.0 | 7.0 | 6.9 |
| AG | MAPQ >= 20 | 9.3 | 6.9 | 6.8 | 8.0 | 7.3 | 7.3 | 6.6 | 6.4 | 6.7 | 7.6 | 7.2 | 7.2 | 7.5 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.2 | 7.2 | 7.4 | 7.3 | 7.1 | 7.5 | 7.2 | 7.3 | 7.2 | 7.2 | 7.0 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.1 | 7.0 | 7.2 | 7.2 | 7.1 | 7.0 | 7.1 | 7.2 | 6.9 | 6.8 | 7.0 | 6.8 | 7.0 | 7.0 | 7.1 | 7.1 | 7.3 | 7.0 | 7.2 | 7.0 | 7.1 | 7.3 | 7.4 | 6.9 | 7.2 | 7.1 | 7.0 | 7.0 | 7.2 | 6.9 | 7.1 | 7.2 | 6.9 | 7.1 | 6.9 | 7.0 | 6.9 | 7.1 | 6.8 | 6.8 | 7.0 | 6.7 | 6.8 | 6.8 | 7.0 | 6.9 | 6.8 | 6.6 | 6.7 | 6.7 | 6.7 | 6.8 | 6.6 | 6.8 | 7.1 | 6.7 | 6.8 | 6.6 | 6.7 | 6.6 |
| AG | MAPQ < 3 | 9.4 | 6.7 | 6.6 | 7.6 | 7.1 | 7.0 | 6.3 | 6.6 | 6.6 | 7.4 | 7.3 | 7.0 | 7.0 | 7.3 | 7.1 | 7.0 | 7.3 | 7.2 | 6.9 | 7.2 | 7.1 | 7.0 | 7.1 | 7.0 | 6.9 | 7.2 | 7.1 | 7.5 | 7.3 | 7.3 | 7.5 | 7.3 | 7.3 | 7.2 | 7.0 | 7.1 | 6.9 | 7.1 | 7.1 | 6.9 | 7.0 | 6.9 | 6.8 | 7.0 | 6.9 | 6.9 | 7.0 | 7.1 | 7.1 | 7.1 | 6.9 | 7.1 | 7.1 | 7.0 | 6.9 | 6.9 | 6.8 | 6.7 | 6.8 | 6.8 | 6.7 | 7.0 | 7.0 | 6.7 | 7.1 | 7.0 | 6.6 | 7.1 | 6.7 | 6.6 | 6.7 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.2 | 6.2 | 6.4 | 6.2 | 6.1 | 6.2 | 6.0 | 6.0 | 6.1 | 6.2 | 5.9 | 6.1 | 6.1 | 5.9 | 6.1 | 6.1 | 5.9 | 5.9 | 6.0 | 5.7 | 5.7 | 5.9 |
| AT | MAPQ >= 30 | 8.8 | 6.1 | 6.5 | 6.1 | 6.5 | 6.9 | 6.8 | 6.8 | 6.0 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.2 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.0 | 6.1 | 6.1 | 6.0 |
| AT | MAPQ >= 20 | 8.2 | 5.6 | 5.9 | 5.9 | 6.3 | 6.7 | 6.7 | 6.6 | 5.6 | 6.3 | 6.3 | 5.9 | 6.2 | 6.0 | 6.2 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 5.9 | 6.0 | 6.1 | 5.7 | 5.9 | 5.9 | 6.1 | 6.1 | 6.0 | 5.8 | 6.2 | 6.1 | 5.8 | 6.1 | 6.2 | 6.1 | 6.3 | 6.3 | 5.8 | 6.5 | 6.1 | 6.1 | 6.0 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 6.2 | 5.9 | 5.7 | 6.0 | 6.0 | 5.6 | 5.9 | 6.0 | 5.7 | 6.1 | 5.8 | 5.5 | 5.8 | 6.0 | 5.9 | 6.0 | 5.9 | 5.9 | 5.7 | 5.9 | 5.7 | 5.8 | 5.8 | 5.6 | 5.9 | 5.8 | 5.5 | 5.7 | 5.6 | 5.7 | 5.8 | 5.9 | 5.6 | 5.8 | 5.8 | 5.8 | 5.6 | 5.7 | 5.3 | 5.7 | 5.8 | 5.6 | 5.7 | 5.5 | 5.4 | 5.6 | 5.4 | 5.2 | 5.2 | 5.2 | 5.1 |
| AT | MAPQ < 3 | 6.3 | 4.6 | 4.6 | 4.6 | 4.9 | 5.0 | 5.0 | 5.1 | 4.2 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.5 | 4.6 | 4.7 | 4.5 | 4.6 | 4.6 | 4.5 | 4.6 | 4.7 | 4.6 | 4.8 | 4.8 | 4.5 | 4.5 | 4.8 | 4.4 | 4.6 | 4.5 | 4.4 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.5 | 4.4 | 4.5 | 4.7 | 4.6 | 4.5 | 4.5 | 4.6 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.3 | 4.5 | 4.4 | 4.2 | 4.5 | 4.4 | 4.3 | 4.4 | 4.3 | 4.3 | 4.3 | 4.3 | 4.2 | 4.3 | 4.5 | 4.1 | 4.3 | 4.6 | 4.2 | 4.2 | 4.2 | 4.1 | 4.1 | 4.2 | 4.1 | 4.1 | 4.3 | 4.2 | 4.3 | 4.3 | 4.2 | 4.1 | 4.4 | 3.9 | 3.9 | 4.0 | 4.0 | 4.1 | 4.0 | 3.9 | 4.1 | 4.1 | 3.8 | 3.8 | 3.9 | 3.8 |
| CA | MAPQ >= 30 | 8.7 | 5.1 | 7.6 | 7.4 | 6.7 | 7.2 | 6.8 | 7.3 | 7.9 | 7.2 | 7.2 | 7.6 | 7.4 | 7.4 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.4 | 7.6 | 7.6 | 7.4 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.7 | 7.7 | 7.6 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.5 | 7.7 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.5 | 7.6 | 7.7 | 7.5 | 7.6 | 7.6 | 7.4 | 7.6 | 7.6 | 7.4 | 7.6 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.3 | 7.4 | 7.4 | 7.2 | 7.4 |
| CA | MAPQ >= 20 | 8.8 | 5.0 | 7.8 | 7.5 | 6.6 | 7.4 | 6.8 | 7.2 | 8.2 | 7.2 | 7.5 | 7.9 | 7.4 | 7.3 | 7.5 | 7.7 | 7.5 | 7.6 | 7.8 | 7.3 | 7.8 | 7.7 | 7.3 | 7.5 | 7.6 | 7.3 | 7.5 | 7.4 | 7.2 | 7.7 | 7.4 | 7.3 | 7.6 | 7.7 | 7.6 | 7.6 | 7.8 | 7.2 | 7.6 | 7.5 | 7.3 | 7.2 | 7.4 | 7.1 | 7.6 | 7.6 | 7.0 | 7.3 | 7.3 | 7.3 | 7.7 | 7.4 | 7.2 | 7.5 | 7.5 | 7.1 | 7.5 | 7.4 | 7.0 | 7.5 | 7.4 | 7.2 | 7.4 | 7.4 | 7.2 | 7.4 | 7.6 | 7.3 | 7.6 | 7.6 | 7.1 | 7.6 | 7.4 | 7.2 | 7.5 | 7.5 | 7.3 | 7.5 | 7.3 | 7.1 | 7.6 | 7.5 | 7.2 | 7.4 | 7.3 | 7.0 | 7.5 | 7.4 | 7.2 | 7.3 | 7.2 | 7.1 | 7.3 | 7.3 | 7.0 | 7.0 | 6.9 | 6.8 | 7.2 |
| CA | MAPQ < 3 | 8.1 | 4.8 | 7.4 | 7.2 | 6.2 | 6.8 | 6.8 | 6.8 | 7.5 | 6.9 | 7.0 | 7.2 | 7.1 | 6.8 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.0 | 7.2 | 7.2 | 6.8 | 7.2 | 7.3 | 6.8 | 7.2 | 7.4 | 6.8 | 7.3 | 7.3 | 7.1 | 7.4 | 7.4 | 6.9 | 7.2 | 7.4 | 6.9 | 7.1 | 7.0 | 6.7 | 7.0 | 7.0 | 6.8 | 7.0 | 7.0 | 6.9 | 7.2 | 7.0 | 6.9 | 7.3 | 7.1 | 6.8 | 7.1 | 7.0 | 6.7 | 6.9 | 6.9 | 6.7 | 6.9 | 6.8 | 6.6 | 6.8 | 6.8 | 6.5 | 6.7 | 6.7 | 6.6 | 6.7 | 6.8 | 6.5 | 6.8 | 6.7 | 6.5 | 6.6 | 6.7 | 6.3 | 6.6 | 6.6 | 6.3 | 6.6 | 6.6 | 6.4 | 6.6 | 6.6 | 6.5 | 6.5 | 6.7 | 6.3 | 6.6 | 6.7 | 6.5 | 6.8 | 6.8 | 6.4 | 6.6 | 6.6 | 6.4 | 6.4 |
| CC | MAPQ >= 30 | 6.1 | 5.4 | 6.6 | 5.5 | 5.6 | 5.8 | 5.9 | 6.0 | 5.6 | 5.6 | 6.0 | 6.0 | 5.9 | 6.2 | 6.1 | 6.1 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.5 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.6 | 6.7 | 6.9 | 6.9 | 6.9 | 7.0 |
| CC | MAPQ >= 20 | 6.4 | 6.1 | 7.2 | 5.9 | 6.2 | 6.3 | 6.3 | 6.6 | 6.0 | 6.0 | 6.4 | 6.4 | 6.6 | 6.7 | 6.9 | 6.7 | 6.8 | 7.1 | 6.7 | 6.8 | 6.9 | 6.6 | 6.6 | 6.9 | 6.7 | 6.6 | 6.6 | 6.4 | 6.6 | 6.7 | 6.7 | 7.0 | 7.2 | 7.0 | 6.9 | 7.2 | 7.1 | 7.1 | 7.1 | 6.7 | 6.7 | 7.1 | 6.8 | 6.9 | 6.9 | 6.7 | 7.0 | 7.2 | 7.1 | 6.9 | 7.0 | 7.2 | 7.2 | 7.3 | 6.9 | 7.0 | 7.3 | 7.1 | 7.1 | 7.4 | 7.2 | 7.0 | 7.1 | 7.0 | 6.9 | 7.2 | 7.0 | 7.2 | 7.3 | 6.9 | 6.9 | 7.1 | 6.9 | 6.9 | 7.3 | 7.1 | 7.3 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.3 | 7.5 | 7.5 | 7.5 | 7.7 | 7.6 | 7.4 | 7.8 | 7.9 | 7.9 | 8.2 | 7.8 | 7.9 | 8.3 | 8.3 | 8.3 | 8.3 |
| CC | MAPQ < 3 | 7.6 | 7.1 | 8.3 | 6.8 | 7.2 | 7.7 | 7.6 | 7.9 | 7.3 | 7.4 | 7.7 | 7.7 | 7.5 | 7.8 | 7.8 | 7.5 | 7.9 | 8.0 | 7.8 | 8.1 | 8.2 | 7.8 | 8.1 | 8.3 | 7.7 | 8.0 | 8.3 | 7.7 | 7.9 | 7.9 | 7.7 | 7.8 | 7.9 | 7.8 | 8.0 | 8.2 | 7.8 | 7.8 | 8.2 | 7.9 | 8.0 | 8.1 | 7.8 | 8.1 | 8.2 | 7.9 | 8.2 | 8.2 | 7.8 | 8.3 | 8.2 | 7.8 | 8.1 | 8.4 | 7.9 | 8.1 | 8.3 | 8.0 | 8.0 | 8.2 | 8.0 | 8.1 | 8.2 | 8.0 | 8.2 | 8.4 | 8.2 | 8.3 | 8.4 | 8.5 | 8.7 | 8.8 | 8.9 | 9.2 | 9.2 | 8.9 | 9.0 | 9.3 | 9.0 | 9.2 | 9.3 | 9.3 | 9.4 | 9.6 | 9.6 | 9.5 | 9.5 | 9.6 | 9.5 | 9.6 | 9.5 | 9.8 | 10.1 | 9.8 | 9.9 | 10.4 | 10.1 | 10.1 | 10.1 |
| CG | MAPQ >= 30 | 2.7 | 1.0 | 2.2 | 2.1 | 1.8 | 2.1 | 1.7 | 2.1 | 2.0 | 2.0 | 2.1 | 2.1 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.1 | 2.0 | 2.1 | 2.0 | 2.0 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.2 | 2.2 | 2.1 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.3 | 2.3 | 2.3 | 2.3 | 2.4 | 2.4 | 2.4 |
| CG | MAPQ >= 20 | 4.2 | 1.4 | 3.2 | 2.8 | 2.6 | 3.0 | 2.4 | 3.3 | 3.2 | 3.1 | 3.1 | 3.2 | 3.0 | 2.8 | 3.0 | 2.9 | 2.8 | 2.9 | 2.9 | 2.8 | 3.0 | 2.9 | 2.8 | 3.0 | 3.0 | 3.0 | 3.1 | 3.0 | 2.9 | 3.1 | 3.0 | 3.1 | 3.3 | 3.2 | 3.0 | 2.9 | 2.9 | 3.0 | 3.1 | 3.1 | 3.2 | 3.1 | 3.5 | 3.3 | 3.2 | 3.3 | 3.1 | 3.4 | 3.4 | 3.4 | 3.2 | 3.2 | 3.3 | 3.3 | 3.2 | 3.1 | 3.2 | 3.2 | 3.3 | 3.3 | 3.3 | 3.2 | 3.2 | 3.3 | 3.1 | 3.2 | 3.4 | 3.1 | 3.3 | 3.4 | 3.3 | 3.6 | 3.4 | 3.3 | 3.2 | 3.5 | 3.5 | 3.3 | 3.3 | 3.4 | 3.4 | 3.3 | 3.2 | 3.3 | 3.4 | 3.2 | 3.5 | 3.4 | 3.5 | 3.5 | 3.4 | 3.7 | 3.5 | 3.6 | 3.5 | 3.7 | 3.7 | 3.6 | 3.7 |
| CG | MAPQ < 3 | 5.6 | 2.4 | 4.9 | 4.6 | 3.8 | 4.6 | 3.7 | 4.5 | 4.7 | 4.5 | 4.3 | 4.9 | 4.5 | 4.2 | 4.8 | 4.4 | 4.2 | 4.6 | 4.3 | 4.3 | 4.5 | 4.2 | 4.2 | 4.6 | 4.4 | 4.4 | 4.7 | 4.4 | 4.3 | 4.6 | 4.4 | 4.3 | 4.7 | 4.5 | 4.5 | 4.8 | 4.5 | 4.4 | 4.7 | 4.7 | 4.6 | 4.9 | 4.7 | 4.4 | 4.7 | 4.9 | 4.5 | 4.9 | 4.6 | 4.4 | 4.8 | 4.5 | 4.5 | 4.8 | 4.7 | 4.5 | 4.9 | 4.9 | 4.4 | 4.8 | 4.5 | 4.4 | 4.8 | 4.5 | 4.5 | 4.9 | 4.6 | 4.7 | 5.0 | 4.7 | 4.7 | 5.0 | 4.9 | 4.8 | 5.2 | 5.1 | 4.9 | 5.3 | 5.2 | 4.9 | 5.2 | 5.2 | 5.1 | 5.4 | 5.2 | 5.1 | 5.5 | 5.4 | 5.3 | 5.5 | 5.5 | 5.3 | 5.6 | 5.6 | 5.5 | 6.0 | 5.8 | 5.6 | 6.1 |
| CT | MAPQ >= 30 | 9.6 | 5.8 | 7.3 | 7.4 | 6.9 | 7.6 | 7.5 | 7.8 | 7.3 | 7.0 | 7.2 | 7.3 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 | 7.3 | 7.4 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.5 | 7.3 | 7.3 | 7.5 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 |
| CT | MAPQ >= 20 | 9.6 | 5.7 | 7.5 | 7.3 | 6.5 | 7.4 | 7.3 | 7.5 | 6.8 | 6.6 | 6.8 | 7.0 | 6.9 | 6.8 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 6.8 | 6.9 | 7.1 | 7.0 | 6.9 | 7.1 | 6.9 | 7.3 | 7.1 | 7.3 | 6.9 | 7.1 | 6.9 | 6.9 | 7.0 | 7.1 | 7.0 | 7.3 | 7.0 | 7.3 | 7.2 | 7.0 | 6.9 | 7.2 | 7.2 | 7.1 | 7.2 | 7.1 | 7.2 | 7.4 | 7.3 | 7.1 | 7.3 | 7.4 | 7.3 | 7.4 | 7.2 | 7.2 | 7.4 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.2 | 7.1 | 7.2 | 7.2 | 7.3 | 7.6 | 7.2 | 7.3 | 7.4 | 7.4 | 7.2 | 7.4 | 7.3 | 7.3 | 7.5 | 7.5 | 7.1 | 7.5 | 7.5 | 7.1 | 7.3 | 7.1 | 7.3 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 7.1 | 7.0 | 6.7 |
| CT | MAPQ < 3 | 8.7 | 5.4 | 6.9 | 6.8 | 6.2 | 7.3 | 7.0 | 7.5 | 6.9 | 6.4 | 6.8 | 7.0 | 6.7 | 6.6 | 6.8 | 6.6 | 6.6 | 6.7 | 6.9 | 6.7 | 6.9 | 7.2 | 6.8 | 7.0 | 7.3 | 6.8 | 6.8 | 6.9 | 6.7 | 6.9 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 7.0 | 7.2 | 6.8 | 6.8 | 7.0 | 6.8 | 6.8 | 7.0 | 6.8 | 6.9 | 6.9 | 6.7 | 6.7 | 6.9 | 6.7 | 6.9 | 7.1 | 6.7 | 6.8 | 7.0 | 6.6 | 6.9 | 7.0 | 6.9 | 6.7 | 7.1 | 6.8 | 6.6 | 7.1 | 6.5 | 6.7 | 6.8 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.4 | 6.3 | 6.6 | 6.3 | 6.3 | 6.1 | 6.3 | 6.2 | 6.1 | 6.4 | 6.2 | 6.2 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.1 | 6.1 | 5.9 | 6.0 | 6.1 | 5.9 | 5.9 | 5.9 | 5.8 | 6.0 |
| GA | MAPQ >= 30 | 5.3 | 7.3 | 6.8 | 6.7 | 7.1 | 6.5 | 6.2 | 5.4 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.5 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 |
| GA | MAPQ >= 20 | 5.4 | 7.2 | 6.8 | 6.9 | 7.4 | 6.6 | 6.3 | 5.3 | 6.6 | 6.3 | 6.3 | 6.6 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.5 | 6.3 | 6.3 | 6.5 | 6.2 | 6.5 | 6.5 | 6.5 | 6.8 | 6.4 | 6.4 | 6.7 | 6.4 | 6.3 | 6.3 | 6.3 | 6.1 | 6.3 | 6.4 | 6.3 | 6.2 | 6.2 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.4 | 6.2 | 6.3 | 6.5 | 6.1 | 6.3 | 6.2 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.1 | 6.3 | 6.2 | 6.4 | 6.4 | 6.1 | 6.3 | 6.0 | 6.2 | 6.2 | 6.2 | 6.2 | 6.0 | 5.9 | 6.1 | 6.0 | 5.9 | 6.1 | 6.1 | 6.2 | 6.0 | 6.2 | 6.0 | 6.0 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.1 | 5.7 | 5.8 | 5.8 | 6.0 | 5.8 | 5.9 |
| GA | MAPQ < 3 | 5.7 | 7.4 | 6.3 | 6.8 | 6.9 | 6.4 | 6.2 | 5.3 | 6.5 | 6.3 | 6.1 | 6.3 | 6.3 | 6.0 | 6.0 | 6.4 | 6.1 | 6.2 | 6.5 | 6.1 | 6.2 | 6.7 | 6.4 | 6.1 | 6.2 | 6.1 | 6.4 | 6.5 | 6.5 | 6.3 | 6.6 | 6.7 | 6.2 | 6.5 | 6.3 | 6.1 | 6.3 | 6.2 | 6.3 | 6.5 | 6.2 | 6.2 | 6.7 | 6.3 | 6.3 | 6.4 | 6.5 | 6.3 | 6.3 | 6.2 | 6.1 | 6.1 | 6.0 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.1 | 6.4 | 6.3 | 6.1 | 6.1 | 6.5 | 5.9 | 6.1 | 6.6 | 5.9 | 6.1 | 6.4 | 5.9 | 5.8 | 5.9 | 5.7 | 5.8 | 5.8 | 5.7 | 5.7 | 5.9 | 5.8 | 5.7 | 5.8 | 5.8 | 5.6 | 5.7 | 5.5 | 5.5 | 5.8 | 5.7 | 5.8 | 5.9 | 5.7 | 5.6 | 5.7 | 5.5 | 5.3 | 5.6 | 5.4 | 5.1 |
| GC | MAPQ >= 30 | 4.0 | 5.7 | 4.9 | 4.9 | 5.5 | 4.9 | 5.3 | 5.0 | 4.9 | 5.3 | 5.4 | 5.3 | 5.2 | 5.3 | 5.2 | 5.3 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.3 | 5.4 | 5.4 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.6 | 5.5 | 5.5 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 |
| GC | MAPQ >= 20 | 4.7 | 6.5 | 5.3 | 5.3 | 6.0 | 5.4 | 5.9 | 5.7 | 5.6 | 6.2 | 6.4 | 6.0 | 5.9 | 6.3 | 6.0 | 6.0 | 6.1 | 5.9 | 5.8 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.1 | 6.0 | 6.2 | 6.1 | 6.1 | 6.0 | 6.2 | 6.2 | 6.0 | 6.1 | 6.1 | 5.8 | 6.0 | 6.1 | 6.0 | 6.1 | 6.1 | 6.3 | 6.3 | 6.3 | 6.1 | 6.2 | 6.4 | 6.3 | 6.4 | 6.4 | 6.1 | 6.3 | 6.1 | 6.1 | 6.5 | 6.3 | 6.1 | 6.4 | 6.3 | 6.1 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.5 | 6.6 | 6.2 | 6.8 | 6.4 | 6.5 | 6.7 | 6.5 | 6.7 | 6.6 | 6.8 | 6.6 | 6.7 | 6.7 | 6.5 | 6.5 | 6.4 | 6.4 | 6.6 | 6.5 | 6.3 | 6.5 | 6.4 | 6.4 | 6.5 | 6.3 | 6.3 | 6.7 | 6.4 | 6.4 | 6.4 | 6.6 |
| GC | MAPQ < 3 | 5.4 | 8.0 | 6.2 | 6.7 | 7.7 | 6.6 | 7.4 | 7.0 | 6.8 | 7.6 | 8.0 | 7.5 | 7.3 | 7.6 | 7.5 | 7.3 | 7.4 | 7.5 | 7.5 | 7.5 | 7.4 | 7.4 | 7.5 | 7.5 | 7.6 | 7.7 | 7.6 | 7.6 | 7.7 | 7.5 | 7.6 | 7.7 | 7.7 | 7.5 | 7.7 | 7.7 | 7.6 | 7.5 | 7.8 | 7.4 | 7.6 | 7.6 | 7.4 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.7 | 7.8 | 7.5 | 7.7 | 7.7 | 7.6 | 7.5 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.4 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.6 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.4 | 7.5 | 7.5 | 7.4 | 7.6 | 7.6 | 7.5 | 7.7 | 7.5 | 7.5 | 7.8 | 7.6 |
| GG | MAPQ >= 30 | 8.6 | 7.9 | 8.0 | 7.1 | 6.7 | 6.3 | 5.7 | 5.2 | 5.7 | 5.8 | 6.0 | 5.9 | 5.9 | 6.0 | 6.1 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 6.8 | 6.9 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.2 | 7.4 | 7.5 | 7.5 | 7.6 |
| GG | MAPQ >= 20 | 9.6 | 8.9 | 8.8 | 8.2 | 7.4 | 7.0 | 6.3 | 5.9 | 6.6 | 6.8 | 7.0 | 6.8 | 7.1 | 6.7 | 7.0 | 7.3 | 7.2 | 7.2 | 7.1 | 6.9 | 7.0 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 6.8 | 6.9 | 6.9 | 6.8 | 7.0 | 6.9 | 7.0 | 7.3 | 7.4 | 7.2 | 7.1 | 6.9 | 6.9 | 6.9 | 7.0 | 7.2 | 7.0 | 7.1 | 7.2 | 7.2 | 7.1 | 7.0 | 7.0 | 6.8 | 7.0 | 6.9 | 6.7 | 7.0 | 7.3 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.4 | 7.3 | 7.4 | 7.2 | 7.4 | 7.5 | 7.5 | 7.3 | 7.4 | 7.6 | 7.5 | 7.6 | 7.7 | 7.6 | 7.7 | 7.6 | 7.6 | 7.7 | 7.6 | 7.7 | 7.9 | 8.2 | 8.0 | 8.2 | 8.4 | 8.3 | 8.2 | 8.4 | 8.3 | 8.5 | 8.6 | 8.7 | 8.7 | 9.1 | 9.1 | 9.2 | 9.6 | 9.6 | 9.6 |
| GG | MAPQ < 3 | 11.0 | 9.9 | 10.2 | 9.6 | 8.7 | 8.5 | 7.8 | 7.2 | 8.0 | 8.3 | 8.3 | 8.3 | 8.6 | 8.5 | 8.8 | 8.9 | 8.9 | 8.8 | 9.1 | 8.7 | 9.1 | 9.1 | 8.7 | 8.9 | 8.8 | 8.5 | 8.7 | 8.8 | 8.7 | 8.9 | 9.0 | 8.8 | 9.0 | 9.1 | 9.0 | 9.1 | 9.4 | 9.4 | 9.5 | 9.6 | 9.5 | 9.6 | 9.6 | 9.4 | 9.6 | 9.7 | 9.6 | 9.7 | 9.8 | 9.6 | 9.8 | 10.0 | 9.9 | 10.0 | 10.4 | 10.5 | 10.5 | 10.7 | 10.9 | 10.9 | 11.2 | 10.9 | 10.9 | 11.1 | 11.0 | 11.4 | 11.2 | 11.2 | 11.6 | 11.5 | 11.3 | 11.6 | 11.9 | 11.9 | 11.7 | 12.1 | 12.2 | 12.1 | 12.3 | 12.4 | 12.1 | 12.2 | 12.0 | 12.3 | 12.3 | 12.1 | 12.2 | 12.4 | 12.2 | 12.1 | 12.3 | 12.1 | 12.2 | 12.4 | 12.1 | 12.6 | 13.2 | 12.8 | 12.9 |
| GT | MAPQ >= 30 | 7.6 | 5.1 | 4.6 | 5.2 | 5.7 | 5.6 | 5.8 | 5.4 | 5.0 | 5.1 | 5.3 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 |
| GT | MAPQ >= 20 | 7.5 | 5.1 | 4.5 | 5.3 | 5.6 | 5.7 | 5.8 | 5.5 | 5.1 | 5.2 | 5.3 | 5.0 | 5.3 | 5.4 | 5.1 | 5.4 | 5.5 | 5.4 | 5.6 | 5.2 | 5.3 | 5.3 | 5.3 | 5.0 | 5.5 | 5.2 | 5.1 | 5.2 | 5.3 | 5.2 | 5.1 | 5.2 | 5.0 | 5.3 | 5.0 | 5.0 | 5.1 | 5.3 | 5.2 | 5.2 | 5.2 | 5.1 | 5.4 | 5.3 | 5.0 | 5.5 | 5.4 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.0 | 5.1 | 5.2 | 5.3 | 5.2 | 5.3 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 4.8 | 5.1 | 4.9 | 4.7 | 4.8 | 5.0 | 5.0 | 4.9 | 4.9 | 4.7 | 4.9 | 4.9 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.7 | 4.6 | 4.8 | 5.0 | 4.7 | 4.9 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 4.8 | 4.9 | 4.6 | 4.7 | 4.8 | 4.5 |
| GT | MAPQ < 3 | 7.8 | 5.2 | 4.5 | 5.7 | 5.8 | 5.7 | 6.0 | 5.5 | 5.0 | 5.3 | 5.4 | 5.1 | 5.4 | 5.5 | 5.2 | 5.4 | 5.4 | 5.2 | 5.2 | 5.2 | 5.1 | 5.3 | 5.0 | 5.0 | 5.3 | 5.1 | 5.0 | 5.1 | 5.1 | 4.9 | 5.2 | 5.0 | 4.8 | 5.2 | 5.0 | 4.9 | 5.2 | 5.0 | 5.0 | 5.2 | 5.3 | 5.1 | 5.3 | 5.1 | 4.8 | 5.1 | 4.9 | 4.9 | 5.2 | 5.1 | 5.0 | 5.1 | 5.0 | 4.9 | 5.0 | 4.8 | 4.8 | 4.9 | 4.8 | 4.7 | 4.9 | 4.9 | 4.8 | 5.0 | 4.8 | 4.7 | 4.9 | 4.7 | 4.9 | 4.9 | 4.8 | 4.7 | 4.8 | 4.7 | 4.9 | 4.7 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.5 | 4.7 | 4.6 | 4.5 | 4.6 | 4.6 | 4.5 | 4.6 | 4.7 | 4.5 | 4.7 | 4.6 | 4.5 |
| TA | MAPQ >= 30 | 3.2 | 5.5 | 4.8 | 5.1 | 5.0 | 4.8 | 5.1 | 5.1 | 5.6 | 5.0 | 4.8 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.8 |
| TA | MAPQ >= 20 | 2.8 | 5.1 | 4.3 | 4.7 | 4.5 | 4.4 | 4.8 | 4.5 | 5.3 | 4.5 | 4.3 | 4.5 | 4.5 | 4.9 | 4.6 | 4.6 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.5 | 4.5 | 4.6 | 4.3 | 4.5 | 4.5 | 4.6 | 4.5 | 4.8 | 4.4 | 4.5 | 4.7 | 4.4 | 4.7 | 4.7 | 4.6 | 4.5 | 4.9 | 4.6 | 4.8 | 4.9 | 4.6 | 4.4 | 4.5 | 4.5 | 4.5 | 4.4 | 4.5 | 4.5 | 4.5 | 4.4 | 4.6 | 4.6 | 4.5 | 4.7 | 4.5 | 4.3 | 4.4 | 4.7 | 4.6 | 4.4 | 4.7 | 4.7 | 4.7 | 4.7 | 4.3 | 4.3 | 4.4 | 4.4 | 4.4 | 4.3 | 4.6 | 4.2 | 4.5 | 4.2 | 4.5 | 4.5 | 4.3 | 4.4 | 4.4 | 4.2 | 4.4 | 4.3 | 4.4 | 4.2 | 4.2 | 4.2 | 4.3 | 4.2 | 4.1 | 4.2 | 4.5 | 4.2 | 4.4 | 4.3 | 4.1 | 4.1 | 4.3 |
| TA | MAPQ < 3 | 2.1 | 3.7 | 3.2 | 3.4 | 3.3 | 3.2 | 3.5 | 3.4 | 3.8 | 3.4 | 3.2 | 3.2 | 3.4 | 3.3 | 3.5 | 3.5 | 3.4 | 3.3 | 3.4 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.5 | 3.5 | 3.3 | 3.3 | 3.4 | 3.2 | 3.4 | 3.2 | 3.2 | 3.3 | 3.2 | 3.2 | 3.2 | 3.2 | 3.2 | 3.1 | 3.2 | 3.2 | 3.1 | 3.1 | 3.2 | 3.2 | 3.2 | 3.2 | 3.1 | 3.2 | 3.3 | 3.2 | 3.2 | 3.2 | 3.1 | 3.2 | 3.1 | 3.1 | 3.0 | 3.2 | 3.3 | 3.1 | 3.2 | 3.3 | 3.0 | 3.1 | 3.0 | 3.0 | 3.1 | 3.0 | 3.1 | 3.3 | 3.0 | 3.0 | 3.2 | 3.0 | 3.1 | 3.0 | 3.0 | 3.1 | 3.2 | 2.9 | 3.0 | 3.2 | 2.9 | 2.9 | 2.9 | 2.9 | 2.9 | 2.9 | 2.8 | 2.8 | 2.8 | 2.8 | 2.9 | 2.8 | 2.8 | 2.7 |
| TC | MAPQ >= 30 | 2.5 | 7.5 | 6.1 | 5.8 | 6.4 | 6.1 | 6.9 | 6.9 | 6.7 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.4 | 6.3 | 6.5 | 6.5 | 6.3 | 6.5 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.5 | 6.5 | 6.3 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.2 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.1 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 |
| TC | MAPQ >= 20 | 2.5 | 7.8 | 6.2 | 5.8 | 6.6 | 6.2 | 7.1 | 6.9 | 6.7 | 6.3 | 6.5 | 6.4 | 6.2 | 6.3 | 6.2 | 6.1 | 6.4 | 6.2 | 5.9 | 6.4 | 6.0 | 5.9 | 6.3 | 6.3 | 6.1 | 6.5 | 6.2 | 6.1 | 6.3 | 6.5 | 6.3 | 6.5 | 6.3 | 6.2 | 6.4 | 6.4 | 6.2 | 6.6 | 6.2 | 6.4 | 6.3 | 6.5 | 6.1 | 6.4 | 6.5 | 6.4 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.1 | 6.3 | 6.4 | 6.3 | 6.5 | 6.4 | 6.2 | 6.3 | 6.5 | 6.1 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.1 | 6.5 | 6.5 | 6.0 | 6.2 | 6.2 | 6.2 | 6.4 | 6.2 | 6.2 | 6.3 | 6.4 | 5.9 | 6.3 | 6.3 | 5.8 | 6.4 | 6.2 | 6.1 | 6.3 | 6.1 | 6.4 | 6.3 | 6.1 | 5.9 | 6.1 | 6.0 | 5.9 | 6.0 | 6.0 |
| TC | MAPQ < 3 | 2.3 | 7.2 | 6.0 | 5.3 | 6.3 | 5.9 | 6.6 | 6.5 | 6.5 | 5.8 | 6.0 | 5.9 | 5.8 | 6.1 | 5.7 | 5.8 | 5.9 | 5.8 | 5.8 | 5.9 | 5.8 | 5.8 | 6.2 | 5.9 | 5.8 | 6.2 | 5.8 | 5.6 | 6.0 | 5.9 | 5.8 | 6.0 | 5.7 | 5.7 | 5.9 | 5.8 | 5.6 | 6.0 | 5.7 | 5.7 | 5.9 | 6.0 | 5.9 | 6.0 | 6.2 | 6.0 | 6.0 | 5.8 | 5.9 | 6.1 | 5.8 | 5.8 | 6.3 | 5.7 | 5.6 | 6.1 | 5.7 | 5.5 | 5.9 | 5.9 | 5.4 | 5.8 | 5.8 | 5.5 | 5.9 | 5.6 | 5.5 | 5.9 | 5.8 | 5.5 | 5.6 | 5.8 | 5.5 | 5.7 | 5.5 | 5.4 | 5.6 | 5.6 | 5.4 | 5.6 | 5.7 | 5.5 | 5.8 | 5.8 | 5.4 | 5.7 | 5.9 | 5.4 | 5.7 | 5.8 | 5.5 | 5.6 | 5.6 | 5.3 | 5.7 | 5.5 | 5.2 | 5.6 | 5.3 |
| TG | MAPQ >= 30 | 4.8 | 8.4 | 7.0 | 7.7 | 7.4 | 7.2 | 7.1 | 7.9 | 8.1 | 7.6 | 7.3 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.4 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.2 | 7.3 | 7.3 |
| TG | MAPQ >= 20 | 4.5 | 8.2 | 7.0 | 7.4 | 7.4 | 7.0 | 7.2 | 8.2 | 8.1 | 7.6 | 7.1 | 7.5 | 7.2 | 7.4 | 7.5 | 7.5 | 7.5 | 7.6 | 7.2 | 7.6 | 7.4 | 7.3 | 7.4 | 7.6 | 7.5 | 7.3 | 7.6 | 7.7 | 7.5 | 7.4 | 7.2 | 7.2 | 7.3 | 7.1 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.5 | 7.5 | 7.2 | 7.5 | 7.7 | 7.3 | 7.3 | 7.4 | 7.3 | 7.5 | 7.5 | 7.1 | 7.3 | 7.6 | 7.2 | 7.3 | 7.4 | 7.5 | 7.5 | 7.5 | 7.2 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.1 | 7.2 | 7.4 | 7.1 | 7.2 | 7.3 | 7.3 | 7.4 | 7.3 | 7.1 | 7.1 | 7.1 | 7.1 | 7.4 | 7.4 | 7.1 | 7.2 | 7.3 | 7.2 | 7.2 | 7.3 | 7.0 | 7.2 | 7.1 | 7.1 | 6.8 | 6.9 | 6.8 | 6.7 | 7.0 | 6.8 | 6.7 | 6.8 |
| TG | MAPQ < 3 | 4.6 | 8.3 | 7.0 | 7.3 | 7.5 | 7.2 | 7.2 | 8.0 | 8.2 | 7.6 | 7.2 | 7.6 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.7 | 7.2 | 7.6 | 7.7 | 7.3 | 7.5 | 7.5 | 7.3 | 7.6 | 7.5 | 7.3 | 7.4 | 7.5 | 7.3 | 7.4 | 7.4 | 7.2 | 7.4 | 7.6 | 7.3 | 7.5 | 7.5 | 7.4 | 7.3 | 7.6 | 7.2 | 7.5 | 7.6 | 7.1 | 7.3 | 7.3 | 7.1 | 7.4 | 7.3 | 7.1 | 7.2 | 7.4 | 7.2 | 7.3 | 7.2 | 7.1 | 7.3 | 7.2 | 7.1 | 7.2 | 7.1 | 6.9 | 7.2 | 7.1 | 6.9 | 7.0 | 7.1 | 6.8 | 7.0 | 6.9 | 6.7 | 6.7 | 6.7 | 6.8 | 6.6 | 6.9 | 6.7 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.2 | 6.4 | 6.5 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.1 | 6.3 | 6.4 | 6.0 | 6.1 | 6.5 |
| TT | MAPQ >= 30 | 4.2 | 8.8 | 7.9 | 7.7 | 7.6 | 8.5 | 9.5 | 9.7 | 9.4 | 8.6 | 8.7 | 8.8 | 8.7 | 8.5 | 8.2 | 8.1 | 7.9 | 7.8 | 7.9 | 7.9 | 7.9 | 8.0 | 8.1 | 8.0 | 8.1 | 8.2 | 8.1 | 8.1 | 8.1 | 8.0 | 7.9 | 8.0 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 8.0 | 7.9 | 7.9 | 7.9 | 7.9 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 8.0 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 8.0 | 7.9 |
| TT | MAPQ >= 20 | 3.7 | 8.0 | 6.9 | 6.8 | 6.7 | 7.7 | 8.4 | 8.6 | 8.2 | 7.3 | 7.5 | 7.6 | 7.5 | 7.4 | 7.2 | 7.3 | 7.1 | 6.8 | 7.2 | 7.1 | 7.1 | 7.4 | 7.6 | 7.5 | 7.1 | 7.2 | 7.0 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 6.9 | 7.1 | 7.0 | 7.1 | 7.4 | 6.9 | 7.1 | 7.3 | 7.0 | 6.8 | 7.0 | 7.1 | 7.1 | 7.2 | 7.1 | 6.9 | 6.9 | 6.8 | 6.8 | 6.9 | 7.0 | 7.0 | 7.3 | 7.0 | 6.7 | 6.8 | 6.7 | 6.8 | 7.0 | 6.7 | 6.7 | 6.9 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 7.1 | 7.0 | 6.9 | 6.9 | 6.9 | 7.0 | 6.9 | 6.6 | 6.8 | 6.8 | 6.9 | 7.0 | 6.9 | 6.9 | 6.8 | 6.7 | 6.8 | 6.6 | 6.9 | 6.7 | 6.8 | 7.0 | 6.9 | 6.9 | 7.1 | 7.0 |
| TT | MAPQ < 3 | 3.5 | 7.2 | 6.2 | 6.2 | 6.2 | 6.8 | 7.6 | 7.6 | 7.2 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.7 | 6.5 | 6.4 | 6.3 | 6.3 | 6.3 | 6.1 | 6.2 | 6.3 | 6.1 | 6.3 | 6.3 | 6.0 | 6.2 | 6.1 | 5.9 | 5.9 | 5.9 | 5.8 | 5.8 | 5.8 | 5.7 | 5.9 | 5.9 | 5.9 | 5.8 | 6.0 | 5.9 | 5.9 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.1 | 6.0 | 5.9 | 5.9 | 5.9 | 5.8 | 6.0 | 6.0 | 5.9 | 5.9 | 5.9 | 5.8 | 6.0 | 6.0 | 5.9 | 5.9 | 6.0 | 5.8 | 5.9 | 6.0 | 5.9 | 6.0 | 6.0 | 6.0 | 6.1 | 6.2 | 6.1 | 6.1 | 6.2 | 6.1 | 6.0 | 6.0 | 6.0 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 5.9 |
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AG CT AA AT CA |
TT AA TG GG TC |
AA GG TT CA CT |
AA AG TG TT CT |
AA TT TG AG GA |
TT AA CT AG TG |
TT AA CT TG TC |
TT TG CT AA CA |
TT AA TG CA CT |
AA TT TG AG CA |
TT AA TG AG CA |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
TT AA CA TG AG |
AA TT CA TG CT |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA CT |
TT AA CA TG AG |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA CT TG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
AA TT CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA GG |
TT AA CA TG GG |
TT AA GG CA TG |
TT AA GG TG CA |
TT AA GG CA TG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
CT GG AG CA AT |
GG TG TT TC AA |
GG CA CT CC TG |
GG AG CA TG CT |
AA TG GG GA AG |
TT CA CT AG AA |
TT CT TG TC CA |
TT TG CT CA TC |
TT CA TG AA CT |
AA TG AG TT CA |
TT CA AG TG AA |
CA TT TG AG CT |
TT AG CA AA TG |
AG TG TT CA AA |
TG CA AG TT AA |
CA TG AG GG TT |
TG CA AG GG TT |
TG CA AG GG CC |
CA AG TG TT GG |
TG AG CA AA TT |
CA TG AG TT GG |
CA TT AG TG AA |
TT TG AG CA AA |
TG CA TT AG AA |
CA TG AA AG TT |
AG CA TG TT AA |
TG CA CT AG AA |
TG CA AA AG TT |
TG AG CT CA TT |
CA TG AG TT AA |
CA AA AG TG CT |
CA TG TT AG AA |
CA TG AG CC TT |
CA GG TT TG CC |
CA GG TG TT CT |
CA TG CC GG CT |
CA TG CT GG CC |
TG CA CC AG TT |
CA TG CT CC TT |
CA TG CT AG TT |
TG TT CA AG GG |
TG CA AG GG CC |
CA AG CT TG TT |
TG TT CT AG CA |
TG CA GG CT TT |
CA TG GG CT AG |
TG AG CT GG TT |
TG CA CC CT TT |
CT TG CA TT CC |
TG CT CA TT AG |
CA TG CT TT CC |
CA CT CC TG AA |
CT TG CC CA AG |
TG CA CC CT AG |
CA CT GG TG AA |
AG TG CT CA CC |
CA TG CC CT TT |
TG CT CA AG CC |
TG TT CC CT CA |
TG CA CC CT AG |
CA GG AG CC CT |
AG TG GG CA CT |
CA GG TG CT CC |
CA TG CT AG GG |
GG TG CT CA AG |
GG TG CA CC CT |
CA GG CT AA TG |
GG CA CT AG TG |
CA TG GG CC CT |
GG CT CA AG TG |
GG TG AG CT CA |
GG CA CT TG CC |
GG CT CA TG AG |
GG TG CT CA TT |
GG CA TG CC CT |
GG CA CT CC TG |
GG CT CA CC TG |
GG CA CC CT TG |
GG CT CC CA TG |
GG CC CT TG CA |
GG CA CC TG CT |
GG CT CC CA TG |
GG CT CC TG CA |
GG CC CA TG CT |
GG CC CT CA TG |
GG CC TG CT CA |
GG CC CA TG CT |
GG CC CA CT AA |
GG CC TG CA CT |
GG CC CA TG CT |
GG CC CA TG CT |
GG CC CA CT TT |
GG CC CA CT TG |
GG CC CA AG CT |
GG CC TT CA CT |
GG CC CA TG CT |
GG CC CT CA TT |
GG CC TT CT CA |
GG CC CA TT TG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
GG AG CT CA GT |
GG TG GC GA TC |
GG CC CA TG CT |
GG AG TG CA CC |
GG GC TG CC AG |
GG CC CT TG AG |
GG CC TT GC TG |
TG CC TT CT GG |
TG GG CA CC TT |
GG TG GC AG CC |
GG GC CC AG TG |
GG CC TG GC CA |
GG CC TG GC CA |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC TG GC CA |
GG CC TG GC AG |
GG CC TG GC AG |
GG CC GC TG CA |
GG CC TG GC AG |
GG CC TG GC CA |
GG CC GC TG CA |
GG CC TG GC AG |
GG CC GC TG CA |
GG CC GC TG CA |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC AG CA |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC AG CA |
GG CC GC TG AG |
GG CC GC CA TG |
GG CC GC CA AG |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC CA TG |
GG CC TG GC AG |
GG CC GC TG CA |
GG CC GC TG CA |
GG CC GC TG AG |
GG CC TG GC CA |
GG CC GC TG CA |
GG CC GC TG AG |
GG CC TG GC CA |
GG CC GC TG CA |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC AG TG |
GG CC GC TG AG |
GG CC GC CA TG |
GG CC GC TG AG |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC TG CT |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC TG CT |
GG CC GC TG CT |
GG CC GC TG CA |
GG CC GC CT TG |
GG CC GC TG AG |
GG CC GC TG AG |
GG CC GC CT TG |
GG CC GC TG AG |
GG CC GC TG AG |
GG CC GC TG CT |
GG CC GC AG TG |
GG CC GC TG CA |
GG CC GC CA TG |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC TG CA |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC TG CA |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC TG CA |
GG CC GC TG AG |
GG CC GC TG CA |
GG CC GC CA TG |
GG CC GC TG CA |
GG CC GC CA TG |
GG CC GC CA CT |
GG CC GC CA TG |
GG CC GC CA TG |
GG CC GC CA CT |
GG CC GC TG CT |
GG CC GC CA TG |
GG CC GC CA TG |
GG CC GC CA TG |
GG CC GC CA TG |
GG CC GC CA CT |
GG CC GC CA TG |
GG CC GC CA TG |
GG CC GC CA TT |
GG CC GC CA TG |
GG CC GC TG CA |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ < 3 | ||||||
|---|---|---|---|---|---|---|---|---|
| Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value |
| TGGGATTACA | 731245 | 0.0e+00 | CTCCTGCCTC | 40769 | 0.0e+00 | AAAAAAAAAA | 3711121 | 0.0e+00 |
| GGATTACAGG | 722226 | 0.0e+00 | TCCTGCCTCA | 38862 | 0.0e+00 | TTTTTTTTTT | 3437861 | 0.0e+00 |
| GCTGGGATTA | 713112 | 0.0e+00 | GAGGCATTTG | 32511 | 0.0e+00 | GGGGGGGGGG | 3230834 | 0.0e+00 |
| CTCAGCCTCC | 689450 | 0.0e+00 | AGGCATTTGG | 32392 | 0.0e+00 | CCCCCCCCCC | 1011545 | 0.0e+00 |
| CTGGGATTAC | 681262 | 0.0e+00 | CGAGGCATTT | 32013 | 0.0e+00 | GGCGGGGGGG | 598958 | 0.0e+00 |
| TAATCCCAGC | 621203 | 0.0e+00 | GGCATTTGGC | 31846 | 0.0e+00 | CGGGGGGGGG | 570886 | 0.0e+00 |
| CTGTAATCCC | 617396 | 0.0e+00 | GATGACGAGG | 31825 | 0.0e+00 | GGGGGGGGGC | 524883 | 0.0e+00 |
| CATCATCATC | 551780 | 0.0e+00 | TGACGAGGCA | 31793 | 0.0e+00 | GCGGGGGGGG | 524514 | 0.0e+00 |
| TCCCAAAGTG | 546041 | 0.0e+00 | ATGACGAGGC | 31750 | 0.0e+00 | GAGGACGGCA | 391957 | 0.0e+00 |
| GCCTCAGCCT | 540994 | 0.0e+00 | ACGAGGCATT | 31746 | 0.0e+00 | CAAGACCCGC | 369154 | 0.0e+00 |
| TCATCATCAT | 540156 | 0.0e+00 | GACGAGGCAT | 31662 | 0.0e+00 | CTTCTTCAAG | 359319 | 0.0e+00 |
| CCAAAGTGCT | 512338 | 0.0e+00 | AGATGACGAG | 31590 | 0.0e+00 | TCGCCCTCGC | 358991 | 0.0e+00 |
| CAAAGTGCTG | 504132 | 0.0e+00 | GCATTTGGCT | 31469 | 0.0e+00 | GTGGCGGGGG | 358454 | 0.0e+00 |
| CCCAAAGTGC | 498053 | 0.0e+00 | TAGATGACGA | 31279 | 0.0e+00 | CGCCCTCGCC | 357908 | 0.0e+00 |
| AGTGCTGGGA | 496987 | 0.0e+00 | ATTAGATGAC | 31202 | 0.0e+00 | CAGCTTGCCG | 351396 | 0.0e+00 |
| AAAGTGCTGG | 490466 | 0.0e+00 | TTAGATGACG | 31184 | 0.0e+00 | TGGGGGGGGG | 345864 | 0.0e+00 |
| TTTGTATTTT | 489763 | 0.0e+00 | AATTAGATGA | 30874 | 0.0e+00 | TGGCGGGGGG | 336211 | 0.0e+00 |
| TTTGGGAGGC | 487321 | 0.0e+00 | ATTTGGCTAC | 30849 | 0.0e+00 | GGGGGGGGCG | 334540 | 0.0e+00 |
| AAGTGCTGGG | 485679 | 0.0e+00 | GGCTACCTTA | 30606 | 0.0e+00 | GGGGCGGGGG | 333567 | 0.0e+00 |
| CCAGGCTGGA | 478345 | 0.0e+00 | CATTTGGCTA | 30557 | 0.0e+00 | TGCCGTCCTC | 323647 | 0.0e+00 |