Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.
Mean base quality of reads with low and high mapping quality.
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mer | Q | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | MAPQ >= 30 | 10.9 | 10.0 | 9.6 | 9.6 | 9.6 | 9.6 | 9.7 | 9.4 | 9.4 | 9.5 | 9.4 | 9.3 | 9.2 | 9.2 | 9.1 | 9.0 | 8.9 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 |
| AA | MAPQ >= 20 | 9.7 | 9.0 | 8.5 | 8.4 | 8.6 | 8.4 | 8.5 | 8.2 | 8.2 | 8.4 | 8.3 | 8.2 | 8.1 | 8.0 | 7.9 | 7.8 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.7 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.8 | 7.9 | 7.8 | 7.9 | 8.0 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 |
| AA | MAPQ >= 10 | 9.4 | 8.7 | 8.3 | 8.2 | 8.4 | 8.3 | 8.4 | 8.1 | 8.2 | 8.4 | 8.4 | 8.3 | 8.2 | 8.0 | 7.8 | 7.8 | 7.8 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.8 | 7.7 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.6 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.9 | 7.9 | 7.9 | 7.9 | 8.0 | 8.0 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 8.2 | 8.1 | 8.1 | 8.2 | 8.2 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.4 | 8.5 | 8.4 | 8.4 | 8.4 | 8.5 | 8.5 | 8.5 |
| AA | MAPQ >= 3 | 10.3 | 9.5 | 9.0 | 8.9 | 9.0 | 9.0 | 9.2 | 9.0 | 9.2 | 9.3 | 9.2 | 9.1 | 8.7 | 8.7 | 8.6 | 8.7 | 8.5 | 8.3 | 8.3 | 8.3 | 8.2 | 8.2 | 8.2 | 8.2 | 8.3 | 8.2 | 8.3 | 8.3 | 8.3 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.5 | 8.6 | 8.8 | 8.7 | 8.6 | 8.3 | 8.4 | 8.4 | 8.2 | 8.3 | 8.4 | 8.7 | 8.6 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.7 | 8.7 | 8.5 | 8.6 | 8.6 | 8.8 | 8.7 | 8.8 | 8.6 | 8.7 | 8.9 | 9.0 | 8.9 | 9.0 | 8.9 | 8.9 | 9.1 | 9.0 |
| AA | MAPQ < 3 | 10.3 | 9.5 | 9.0 | 8.9 | 9.0 | 9.0 | 9.1 | 8.8 | 8.8 | 9.0 | 9.0 | 8.9 | 8.8 | 8.6 | 8.5 | 8.6 | 8.5 | 8.4 | 8.3 | 8.4 | 8.3 | 8.3 | 8.4 | 8.4 | 8.5 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.3 | 8.3 | 8.3 | 8.3 | 8.4 | 8.4 | 8.5 | 8.4 | 8.3 | 8.4 | 8.3 | 8.3 | 8.4 | 8.4 | 8.5 | 8.5 | 8.4 | 8.4 | 8.4 | 8.4 | 8.5 | 8.4 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.6 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.7 | 8.6 |
| AA | Unmapped | 9.0 | 8.3 | 8.0 | 7.7 | 7.9 | 8.0 | 20.4 | 7.8 | 7.7 | 8.0 | 8.2 | 8.2 | 8.1 | 7.9 | 8.0 | 8.0 | 8.0 | 7.9 | 7.7 | 7.8 | 7.9 | 7.8 | 7.9 | 19.9 | 7.8 | 7.8 | 7.7 | 7.7 | 7.5 | 7.7 | 7.8 | 7.7 | 7.5 | 7.3 | 7.4 | 7.5 | 7.5 | 7.4 | 7.2 | 7.3 | 7.4 | 7.4 | 7.3 | 7.1 | 7.2 | 7.3 | 7.3 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.0 | 6.9 | 7.1 | 7.2 | 7.1 | 7.0 | 6.9 | 7.0 | 7.1 | 7.1 | 7.0 | 6.9 | 7.1 | 7.4 | 18.9 | 19.4 | 19.4 | 19.3 | 19.2 | 18.2 | 16.4 | 14.4 |
| AC | MAPQ >= 30 | 5.4 | 5.2 | 4.9 | 4.9 | 5.2 | 5.0 | 5.1 | 4.9 | 4.9 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 |
| AC | MAPQ >= 20 | 5.3 | 5.1 | 4.9 | 4.9 | 5.1 | 4.9 | 5.1 | 4.9 | 4.9 | 4.9 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 |
| AC | MAPQ >= 10 | 5.2 | 5.1 | 4.9 | 4.9 | 5.2 | 5.0 | 5.2 | 4.8 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.0 | 5.1 | 5.2 | 5.0 | 5.1 | 4.9 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.3 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.3 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.3 | 5.2 | 5.4 | 5.3 | 5.3 | 5.3 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.0 | 5.2 | 5.1 | 5.2 | 5.2 |
| AC | MAPQ >= 3 | 5.2 | 5.0 | 5.0 | 5.0 | 5.2 | 5.0 | 5.2 | 4.9 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.3 | 5.1 | 5.1 | 5.1 | 5.3 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.3 | 5.2 | 5.4 | 5.3 | 5.2 | 5.1 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.1 | 5.0 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.3 | 5.0 | 5.2 | 5.3 |
| AC | MAPQ < 3 | 5.3 | 5.1 | 5.0 | 4.9 | 5.2 | 5.0 | 5.2 | 4.9 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 |
| AC | Unmapped | 4.7 | 4.5 | 4.3 | 4.2 | 4.4 | 4.1 | 4.3 | 4.1 | 4.1 | 4.1 | 4.2 | 4.1 | 4.1 | 4.0 | 4.1 | 4.0 | 4.1 | 3.9 | 4.0 | 3.9 | 4.0 | 3.8 | 3.9 | 3.7 | 3.9 | 3.8 | 3.9 | 3.8 | 3.9 | 3.8 | 3.9 | 4.0 | 16.0 | 3.8 | 3.9 | 3.8 | 3.9 | 3.8 | 3.9 | 3.8 | 3.9 | 3.8 | 3.9 | 3.8 | 3.8 | 3.8 | 3.8 | 3.7 | 3.8 | 3.8 | 3.8 | 3.8 | 3.9 | 3.7 | 3.8 | 3.8 | 3.7 | 3.7 | 3.8 | 3.8 | 3.8 | 3.9 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.9 | 3.9 | 3.9 | 4.0 | 4.2 | 4.5 | 4.6 |
| AG | MAPQ >= 30 | 9.2 | 7.4 | 7.1 | 7.6 | 7.5 | 7.3 | 7.0 | 7.0 | 7.0 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 |
| AG | MAPQ >= 20 | 9.4 | 7.3 | 7.1 | 7.6 | 7.4 | 7.2 | 7.0 | 7.0 | 7.0 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.5 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 7.4 | 7.2 | 7.4 | 7.3 | 7.4 | 7.5 | 7.3 | 7.4 | 7.4 | 7.4 | 7.2 | 7.3 | 7.3 | 7.4 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.3 | 7.3 | 7.2 | 7.3 | 7.4 | 7.2 | 7.2 |
| AG | MAPQ >= 10 | 9.2 | 7.1 | 6.8 | 7.4 | 7.2 | 6.9 | 6.8 | 6.8 | 6.9 | 7.1 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.3 | 7.2 | 7.2 | 7.2 | 7.1 | 7.5 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.2 | 7.3 | 7.1 | 7.1 | 7.2 | 7.1 | 7.0 | 7.2 | 7.1 | 7.0 | 7.1 | 7.2 | 7.1 | 7.1 | 6.9 | 7.2 | 7.0 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.3 | 7.2 | 7.1 | 7.2 | 7.1 | 7.2 | 7.2 | 7.3 | 7.3 | 7.1 | 7.3 | 7.4 | 7.2 | 7.1 |
| AG | MAPQ >= 3 | 8.7 | 6.8 | 6.6 | 7.1 | 7.1 | 6.7 | 6.7 | 6.7 | 6.7 | 7.0 | 7.0 | 7.0 | 7.2 | 7.0 | 7.2 | 7.1 | 7.2 | 7.4 | 7.1 | 7.1 | 7.2 | 7.0 | 7.2 | 7.2 | 7.0 | 7.0 | 6.9 | 7.0 | 6.9 | 7.1 | 6.9 | 7.0 | 7.1 | 6.9 | 6.8 | 6.9 | 6.9 | 6.7 | 6.7 | 6.8 | 6.6 | 6.6 | 6.5 | 6.8 | 6.6 | 6.8 | 7.0 | 6.9 | 7.2 | 7.0 | 6.8 | 6.8 | 7.0 | 7.1 | 7.0 | 6.9 | 6.9 | 7.1 | 7.0 | 6.9 | 7.0 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 7.0 | 7.0 | 7.1 | 7.0 | 7.2 | 7.1 | 7.1 | 6.6 |
| AG | MAPQ < 3 | 8.9 | 7.1 | 6.8 | 7.3 | 7.2 | 6.9 | 6.7 | 6.7 | 6.8 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.2 | 7.0 | 7.0 | 7.1 | 7.0 | 7.2 | 7.1 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.0 | 7.0 |
| AG | Unmapped | 7.6 | 5.9 | 6.0 | 6.1 | 6.1 | 5.8 | 5.7 | 17.9 | 5.7 | 18.0 | 5.8 | 5.7 | 5.7 | 5.6 | 5.8 | 5.7 | 5.8 | 17.9 | 5.7 | 5.7 | 17.9 | 5.5 | 5.7 | 5.5 | 5.7 | 5.6 | 5.6 | 5.7 | 5.8 | 5.8 | 17.9 | 5.6 | 5.8 | 5.6 | 5.7 | 5.7 | 5.7 | 5.6 | 5.7 | 5.5 | 5.7 | 5.5 | 5.6 | 5.4 | 5.5 | 5.4 | 5.6 | 5.4 | 5.4 | 5.5 | 5.6 | 5.3 | 5.5 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.4 | 5.5 | 5.4 | 5.5 | 5.5 | 5.6 | 5.6 | 5.6 | 5.9 | 6.2 | 6.5 |
| AT | MAPQ >= 30 | 9.4 | 7.5 | 8.1 | 7.5 | 7.7 | 7.5 | 7.7 | 7.6 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 |
| AT | MAPQ >= 20 | 8.6 | 7.0 | 7.4 | 6.8 | 7.0 | 6.9 | 7.1 | 6.8 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.3 | 6.2 | 6.1 | 6.2 | 6.0 | 6.2 | 6.1 | 6.1 | 6.2 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.0 | 6.0 | 6.1 | 6.1 | 6.2 | 6.2 |
| AT | MAPQ >= 10 | 8.5 | 7.0 | 7.5 | 6.9 | 7.0 | 6.9 | 7.2 | 6.9 | 6.6 | 6.6 | 6.7 | 6.7 | 6.6 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.4 | 6.6 | 6.4 | 6.4 | 6.5 | 6.6 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.6 | 6.5 | 6.6 | 6.5 | 6.5 | 6.5 | 6.6 | 6.5 | 6.3 | 6.4 | 6.6 | 6.4 | 6.4 | 6.5 | 6.3 | 6.5 | 6.4 | 6.4 | 6.5 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.2 | 6.3 | 6.3 | 6.3 | 6.4 | 6.5 |
| AT | MAPQ >= 3 | 9.3 | 7.6 | 8.0 | 7.4 | 7.6 | 7.4 | 7.6 | 7.4 | 6.9 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 6.7 | 6.9 | 6.8 | 6.8 | 6.9 | 7.0 | 6.7 | 7.0 | 6.9 | 7.0 | 6.8 | 6.8 | 6.9 | 6.9 | 7.0 | 7.1 | 6.9 | 7.0 | 7.0 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 | 7.0 | 6.7 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 7.0 | 6.8 | 6.8 | 6.7 | 6.7 | 7.0 | 6.7 | 6.8 | 7.0 | 6.9 | 6.7 | 6.9 | 6.9 | 7.0 | 6.9 | 7.0 | 6.8 | 6.7 | 7.0 | 6.8 | 6.8 | 7.0 | 7.0 | 7.1 | 7.1 |
| AT | MAPQ < 3 | 9.2 | 7.5 | 7.9 | 7.3 | 7.5 | 7.4 | 7.7 | 7.4 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 7.0 | 6.9 | 6.8 | 7.0 | 6.8 | 6.8 | 6.9 | 6.8 | 6.9 | 6.9 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 6.9 | 6.9 |
| AT | Unmapped | 7.9 | 18.9 | 6.7 | 6.1 | 6.1 | 6.3 | 6.4 | 6.1 | 5.7 | 5.6 | 5.9 | 5.8 | 5.7 | 5.5 | 5.4 | 5.7 | 5.7 | 5.5 | 5.3 | 5.2 | 5.5 | 5.5 | 5.3 | 5.3 | 17.2 | 5.3 | 5.3 | 5.2 | 5.0 | 4.9 | 5.3 | 5.3 | 5.3 | 5.0 | 4.9 | 5.2 | 5.2 | 5.2 | 16.5 | 4.9 | 5.2 | 5.3 | 17.1 | 4.8 | 4.9 | 5.1 | 5.1 | 5.0 | 5.0 | 16.8 | 5.1 | 5.0 | 5.0 | 4.8 | 4.8 | 5.1 | 5.1 | 5.0 | 4.8 | 4.8 | 5.0 | 5.0 | 5.1 | 4.8 | 4.8 | 5.1 | 5.1 | 5.1 | 4.9 | 5.0 | 5.3 | 5.5 | 5.7 | 5.7 |
| CA | MAPQ >= 30 | 8.3 | 6.3 | 7.3 | 7.4 | 7.0 | 7.4 | 7.0 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 |
| CA | MAPQ >= 20 | 8.3 | 6.3 | 7.5 | 7.5 | 7.1 | 7.6 | 7.0 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.8 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.5 | 7.6 | 7.7 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 |
| CA | MAPQ >= 10 | 8.4 | 6.4 | 7.5 | 7.5 | 7.2 | 7.6 | 7.0 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.8 | 7.6 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 7.8 | 8.0 | 8.0 | 8.0 | 7.9 | 7.9 | 7.9 | 7.8 | 7.8 | 8.0 | 7.8 | 8.0 | 7.9 | 7.8 | 7.9 | 7.9 | 7.7 | 7.9 | 7.8 | 7.9 | 8.0 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 8.0 | 7.8 | 7.9 | 7.8 | 7.9 | 7.7 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 |
| CA | MAPQ >= 3 | 8.4 | 6.4 | 7.7 | 7.7 | 7.4 | 7.8 | 7.2 | 7.9 | 7.8 | 7.9 | 7.7 | 7.8 | 7.7 | 7.6 | 7.9 | 7.6 | 7.7 | 7.5 | 7.6 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.6 | 7.9 | 7.8 | 7.9 | 7.9 | 7.9 | 8.1 | 8.0 | 8.1 | 7.8 | 8.1 | 8.0 | 8.1 | 7.8 | 7.8 | 7.7 | 7.7 | 7.6 | 7.7 | 7.5 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.7 | 7.5 | 7.5 | 7.6 | 7.5 | 7.7 | 7.5 | 7.5 | 7.5 | 7.7 | 7.8 | 7.6 | 7.7 | 7.8 | 7.6 | 7.7 | 7.5 | 7.5 |
| CA | MAPQ < 3 | 8.4 | 6.4 | 7.6 | 7.6 | 7.2 | 7.7 | 7.1 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.8 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.9 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 |
| CA | Unmapped | 7.1 | 5.4 | 6.2 | 6.2 | 6.0 | 6.4 | 5.7 | 6.1 | 6.1 | 6.3 | 6.1 | 6.1 | 5.8 | 6.0 | 6.1 | 6.1 | 18.1 | 5.8 | 5.9 | 18.2 | 5.9 | 5.8 | 5.5 | 5.7 | 5.7 | 5.7 | 5.6 | 5.6 | 5.6 | 5.8 | 5.7 | 5.7 | 5.5 | 5.6 | 5.8 | 5.8 | 5.7 | 17.1 | 5.6 | 5.8 | 5.7 | 17.2 | 5.4 | 5.5 | 5.6 | 5.6 | 5.4 | 5.4 | 5.6 | 5.7 | 5.6 | 5.5 | 5.3 | 5.5 | 5.5 | 5.5 | 5.4 | 5.3 | 5.4 | 5.7 | 5.6 | 5.4 | 5.4 | 5.5 | 5.6 | 5.6 | 5.6 | 5.5 | 5.6 | 5.7 | 5.6 | 5.6 | 5.6 | 5.9 |
| CC | MAPQ >= 30 | 5.4 | 4.9 | 5.1 | 4.8 | 5.1 | 5.3 | 5.4 | 5.5 | 5.3 | 5.4 | 5.5 | 5.6 | 5.7 | 5.8 | 5.7 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.8 | 5.9 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 |
| CC | MAPQ >= 20 | 5.9 | 5.3 | 5.6 | 5.3 | 5.5 | 5.7 | 5.9 | 6.0 | 5.9 | 5.9 | 6.0 | 6.0 | 6.0 | 6.4 | 6.2 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.6 | 6.5 | 6.6 | 6.7 | 6.6 | 6.7 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 7.0 | 7.0 | 7.1 | 7.1 |
| CC | MAPQ >= 10 | 5.9 | 5.3 | 5.5 | 5.2 | 5.5 | 5.7 | 5.8 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 5.9 | 6.3 | 6.3 | 6.4 | 6.5 | 6.6 | 6.5 | 6.5 | 6.5 | 6.6 | 6.4 | 6.3 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.6 | 6.5 | 6.4 | 6.5 | 6.6 | 6.6 | 6.6 | 6.7 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.7 | 6.8 | 6.8 | 6.7 | 6.6 | 6.8 | 6.7 | 6.7 | 6.5 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.7 | 6.8 | 6.6 | 6.7 | 6.9 | 6.9 | 6.8 | 6.8 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 7.0 | 7.0 | 7.1 |
| CC | MAPQ >= 3 | 5.5 | 5.0 | 5.2 | 5.1 | 5.3 | 5.4 | 5.6 | 5.8 | 5.7 | 5.9 | 5.8 | 5.6 | 5.7 | 6.0 | 5.7 | 6.0 | 6.1 | 6.3 | 6.2 | 6.1 | 6.0 | 6.1 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.0 | 5.9 | 6.0 | 6.2 | 6.2 | 6.2 | 6.2 | 6.0 | 6.1 | 6.1 | 6.3 | 6.3 | 6.3 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.3 | 6.2 | 6.2 | 6.1 | 6.0 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.1 | 6.0 | 6.2 | 6.2 | 6.3 | 6.2 | 6.1 | 6.2 | 6.3 | 6.5 | 6.8 |
| CC | MAPQ < 3 | 5.7 | 5.1 | 5.4 | 5.2 | 5.4 | 5.5 | 5.7 | 5.8 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.0 | 6.1 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 |
| CC | Unmapped | 5.1 | 4.6 | 4.8 | 4.7 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 4.8 | 4.9 | 5.2 | 5.1 | 4.9 | 4.9 | 5.0 | 5.1 | 5.1 | 4.9 | 4.9 | 4.9 | 5.1 | 5.0 | 5.0 | 5.0 | 17.2 | 5.2 | 5.2 | 5.1 | 5.0 | 5.4 | 17.5 | 5.4 | 5.4 | 5.4 | 6.0 | 5.8 | 5.8 | 5.8 | 5.6 | 5.7 | 6.1 | 6.1 | 6.1 | 6.2 | 6.3 | 6.6 | 6.6 | 6.6 | 6.8 | 18.7 | 6.9 | 6.6 | 6.8 | 6.6 | 6.5 | 6.9 | 6.9 | 6.7 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.7 | 6.8 | 6.9 | 6.8 | 6.8 | 6.7 | 6.9 | 7.2 |
| CG | MAPQ >= 30 | 0.9 | 0.7 | 0.8 | 0.9 | 0.9 | 1.0 | 0.9 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.1 | 1.0 | 1.0 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 |
| CG | MAPQ >= 20 | 1.4 | 1.1 | 1.3 | 1.5 | 1.5 | 1.6 | 1.4 | 1.7 | 1.7 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 |
| CG | MAPQ >= 10 | 1.5 | 1.1 | 1.4 | 1.6 | 1.6 | 1.7 | 1.5 | 1.8 | 1.7 | 1.6 | 1.7 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.6 | 1.7 | 1.8 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.8 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.8 | 1.7 | 1.8 | 1.8 | 1.7 | 1.8 | 1.7 | 1.7 |
| CG | MAPQ >= 3 | 1.3 | 1.0 | 1.1 | 1.3 | 1.3 | 1.4 | 1.3 | 1.6 | 1.4 | 1.3 | 1.4 | 1.4 | 1.4 | 1.4 | 1.5 | 1.5 | 1.4 | 1.5 | 1.4 | 1.5 | 1.6 | 1.6 | 1.7 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 1.6 | 1.5 | 1.5 | 1.5 | 1.5 | 1.4 | 1.5 | 1.5 | 1.6 | 1.6 | 1.5 | 1.6 | 1.5 | 1.5 | 1.5 | 1.6 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 1.6 | 1.6 | 1.7 | 1.6 | 1.6 | 1.5 | 1.5 | 1.6 | 1.5 | 1.6 | 1.5 | 1.5 | 1.4 | 1.4 | 1.4 | 1.5 | 1.5 | 1.6 | 1.5 | 1.5 | 1.5 | 1.4 | 1.5 |
| CG | MAPQ < 3 | 1.4 | 1.0 | 1.3 | 1.4 | 1.4 | 1.5 | 1.3 | 1.6 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 1.5 | 1.6 | 1.5 | 1.5 | 1.5 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.5 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 |
| CG | Unmapped | 2.0 | 1.4 | 1.9 | 14.5 | 2.0 | 2.3 | 2.0 | 2.3 | 2.3 | 2.3 | 2.3 | 14.6 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.4 | 2.4 | 2.4 | 2.4 | 2.4 | 2.3 | 2.4 | 2.4 | 2.4 | 2.4 | 2.6 | 14.7 | 2.5 | 2.5 | 2.4 | 2.5 | 2.7 | 14.6 | 2.6 | 2.5 | 2.6 | 3.0 | 2.6 | 2.9 | 2.5 | 2.5 | 2.6 | 2.7 | 2.8 | 14.6 | 2.6 | 2.7 | 2.7 | 2.7 | 2.7 | 3.0 | 14.8 | 2.7 | 2.7 | 2.8 | 2.7 | 2.7 | 2.9 | 2.8 | 2.7 | 2.9 | 2.7 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 | 2.9 | 3.1 |
| CT | MAPQ >= 30 | 8.4 | 6.8 | 7.2 | 7.1 | 6.9 | 7.1 | 7.2 | 7.5 | 7.2 | 7.2 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 |
| CT | MAPQ >= 20 | 8.3 | 6.7 | 7.2 | 7.1 | 6.8 | 7.1 | 7.2 | 7.4 | 7.1 | 7.2 | 7.2 | 7.4 | 7.3 | 7.2 | 7.5 | 7.3 | 7.2 | 7.4 | 7.4 | 7.3 | 7.5 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.2 | 7.2 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.5 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.2 | 7.3 | 7.2 | 7.3 | 7.4 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 |
| CT | MAPQ >= 10 | 8.2 | 6.7 | 7.2 | 7.1 | 6.8 | 7.1 | 7.1 | 7.4 | 7.0 | 7.1 | 7.1 | 7.5 | 7.3 | 7.2 | 7.4 | 7.3 | 7.2 | 7.4 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.4 | 7.1 | 7.3 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.4 | 7.3 | 7.5 | 7.3 | 7.3 | 7.5 | 7.3 | 7.3 | 7.5 | 7.5 | 7.4 | 7.5 | 7.2 | 7.4 | 7.3 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.6 | 7.3 | 7.4 | 7.5 | 7.4 | 7.3 | 7.3 | 7.3 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 |
| CT | MAPQ >= 3 | 7.9 | 6.5 | 7.0 | 6.8 | 6.7 | 6.7 | 6.7 | 7.0 | 6.5 | 6.8 | 6.9 | 7.2 | 6.9 | 6.9 | 7.1 | 6.8 | 6.9 | 7.2 | 7.1 | 7.0 | 7.1 | 6.9 | 7.0 | 6.8 | 7.1 | 7.0 | 7.0 | 6.8 | 6.9 | 6.9 | 6.7 | 6.6 | 6.8 | 6.7 | 7.0 | 6.8 | 6.9 | 7.0 | 6.9 | 7.0 | 6.9 | 7.3 | 7.2 | 7.4 | 7.1 | 7.0 | 7.2 | 7.0 | 7.1 | 7.3 | 7.4 | 7.3 | 7.5 | 7.0 | 7.3 | 7.1 | 7.3 | 7.3 | 7.3 | 7.5 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 6.9 | 7.1 | 7.1 | 7.0 | 6.9 | 6.7 | 6.7 | 6.7 | 6.8 |
| CT | MAPQ < 3 | 8.0 | 6.5 | 7.0 | 6.8 | 6.6 | 6.9 | 6.9 | 7.1 | 6.8 | 6.9 | 6.9 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 6.9 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 |
| CT | Unmapped | 6.9 | 5.7 | 6.1 | 5.9 | 5.8 | 6.0 | 6.0 | 6.1 | 5.8 | 5.8 | 5.9 | 5.8 | 5.8 | 5.7 | 5.8 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.3 | 5.3 | 5.4 | 5.4 | 5.4 | 5.3 | 5.4 | 5.4 | 5.6 | 5.4 | 5.5 | 5.5 | 5.6 | 5.6 | 17.5 | 5.3 | 5.4 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.3 | 17.3 | 5.2 | 5.3 | 17.2 | 5.1 | 5.3 | 17.2 | 5.2 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 |
| GA | MAPQ >= 30 | 5.7 | 6.7 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 5.7 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| GA | MAPQ >= 20 | 6.0 | 6.9 | 6.4 | 6.6 | 6.6 | 6.5 | 6.4 | 5.9 | 6.2 | 6.3 | 6.2 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.6 | 6.4 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 |
| GA | MAPQ >= 10 | 5.9 | 6.8 | 6.3 | 6.5 | 6.4 | 6.5 | 6.4 | 5.8 | 6.3 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.5 | 6.3 | 6.4 | 6.4 | 6.2 | 6.5 | 6.3 | 6.4 | 6.3 | 6.3 | 6.5 | 6.4 | 6.2 | 6.5 | 6.3 | 6.2 | 6.4 | 6.3 | 6.5 | 6.5 | 6.2 | 6.4 | 6.3 | 6.5 | 6.4 | 6.4 | 6.4 | 6.6 | 6.5 | 6.2 | 6.4 | 6.3 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.3 | 6.4 | 6.3 | 6.5 | 6.3 | 6.3 | 6.4 | 6.5 | 6.6 | 6.6 | 6.4 |
| GA | MAPQ >= 3 | 5.6 | 6.5 | 5.9 | 6.1 | 6.0 | 6.2 | 6.2 | 5.6 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.0 | 6.2 | 6.2 | 6.0 | 6.2 | 6.2 | 6.2 | 6.4 | 6.5 | 6.4 | 6.4 | 6.2 | 6.4 | 6.2 | 6.4 | 6.2 | 6.3 | 6.5 | 6.2 | 6.1 | 6.3 | 6.3 | 6.1 | 6.4 | 6.2 | 6.4 | 6.3 | 5.9 | 6.1 | 6.1 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.2 | 6.0 | 6.1 | 6.1 | 6.3 | 6.4 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.5 | 6.3 | 6.2 | 6.0 | 6.2 | 6.1 | 6.1 | 6.3 | 6.4 | 6.7 | 6.4 | 6.2 |
| GA | MAPQ < 3 | 6.1 | 6.9 | 6.4 | 6.5 | 6.6 | 6.6 | 6.5 | 5.9 | 6.2 | 6.4 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.5 | 6.4 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 |
| GA | Unmapped | 17.9 | 6.3 | 5.5 | 5.9 | 5.9 | 18.3 | 5.7 | 5.2 | 17.8 | 5.7 | 5.5 | 5.6 | 5.3 | 5.6 | 5.5 | 5.6 | 5.5 | 5.4 | 5.4 | 5.5 | 5.4 | 5.6 | 17.5 | 5.5 | 5.5 | 5.6 | 5.7 | 5.5 | 5.7 | 18.0 | 5.7 | 17.8 | 5.4 | 5.6 | 5.6 | 5.7 | 5.5 | 5.4 | 5.4 | 5.7 | 5.6 | 6.0 | 5.2 | 5.4 | 5.5 | 5.5 | 5.3 | 5.4 | 5.5 | 5.5 | 5.4 | 5.5 | 5.2 | 5.4 | 5.6 | 5.5 | 5.4 | 5.3 | 5.3 | 5.5 | 5.5 | 5.6 | 5.3 | 5.5 | 5.7 | 17.0 | 6.0 | 5.6 | 5.6 | 5.8 | 5.8 | 5.7 | 5.8 | 6.2 |
| GC | MAPQ >= 30 | 3.9 | 4.2 | 4.1 | 4.1 | 4.4 | 4.3 | 4.5 | 4.3 | 4.4 | 4.5 | 4.5 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.7 | 4.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 |
| GC | MAPQ >= 20 | 4.4 | 4.6 | 4.6 | 4.5 | 5.0 | 4.8 | 5.2 | 4.8 | 4.9 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.5 | 5.5 | 5.4 | 5.4 | 5.4 | 5.6 | 5.6 | 5.4 | 5.5 | 5.4 | 5.4 | 5.5 | 5.5 | 5.5 | 5.4 | 5.5 | 5.5 | 5.4 | 5.5 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.5 | 5.4 | 5.3 | 5.4 | 5.4 | 5.5 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 |
| GC | MAPQ >= 10 | 4.5 | 4.6 | 4.7 | 4.5 | 4.9 | 4.6 | 5.1 | 4.6 | 4.8 | 4.9 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.3 | 5.3 | 5.2 | 5.2 | 5.3 | 5.1 | 5.3 | 5.2 | 5.3 | 5.3 | 5.3 | 5.5 | 5.5 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.3 | 5.2 | 5.4 | 5.3 | 5.4 | 5.2 | 5.3 | 5.2 | 5.3 | 5.2 | 5.4 | 5.2 | 5.1 | 5.4 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.2 | 5.3 | 5.4 | 5.4 | 5.4 | 5.2 | 5.5 | 5.4 | 5.3 | 5.3 | 5.3 |
| GC | MAPQ >= 3 | 4.3 | 4.3 | 4.3 | 4.2 | 4.5 | 4.4 | 4.9 | 4.4 | 4.5 | 4.5 | 4.6 | 4.7 | 4.6 | 4.9 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.5 | 4.6 | 4.7 | 4.7 | 4.9 | 4.8 | 4.7 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.7 | 4.8 | 4.7 | 4.8 | 4.6 | 4.8 | 4.7 | 4.9 | 4.7 | 4.8 | 4.7 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 5.1 | 5.0 | 4.9 | 4.8 | 5.0 | 5.1 | 5.2 | 5.2 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 4.9 |
| GC | MAPQ < 3 | 4.1 | 4.3 | 4.3 | 4.2 | 4.5 | 4.3 | 4.7 | 4.4 | 4.5 | 4.6 | 4.6 | 4.7 | 4.7 | 4.8 | 4.7 | 4.7 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 |
| GC | Unmapped | 3.7 | 3.9 | 3.8 | 3.9 | 4.3 | 4.0 | 4.4 | 4.1 | 4.2 | 4.3 | 16.7 | 4.3 | 4.4 | 4.3 | 4.4 | 4.4 | 4.4 | 4.5 | 16.8 | 4.6 | 4.5 | 4.4 | 4.5 | 4.5 | 4.4 | 4.6 | 16.7 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 5.2 | 4.5 | 4.6 | 4.8 | 4.4 | 4.4 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.4 | 4.4 | 4.6 | 16.5 | 4.5 | 4.3 | 4.5 | 4.6 | 4.4 | 4.4 | 4.5 | 4.4 | 4.6 | 16.4 | 4.3 | 4.3 | 4.3 | 4.5 | 4.4 | 4.4 | 4.4 | 4.3 | 4.3 | 4.4 | 4.4 | 4.5 |
| GG | MAPQ >= 30 | 5.5 | 5.4 | 5.5 | 5.2 | 5.4 | 5.5 | 5.2 | 5.0 | 5.2 | 5.3 | 5.3 | 5.3 | 5.4 | 5.4 | 5.5 | 5.6 | 5.7 | 5.7 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.8 | 5.8 | 5.9 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 |
| GG | MAPQ >= 20 | 6.5 | 6.4 | 6.4 | 6.1 | 6.4 | 6.6 | 6.1 | 5.9 | 6.3 | 6.4 | 6.3 | 6.2 | 6.3 | 6.4 | 6.6 | 6.6 | 6.7 | 6.8 | 7.0 | 7.0 | 7.1 | 7.0 | 7.1 | 7.3 | 7.2 | 7.4 | 7.2 | 7.2 | 7.2 | 7.3 | 7.4 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.5 | 7.5 | 7.4 | 7.5 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.9 | 7.9 | 7.8 | 7.8 | 7.9 | 8.0 | 7.9 | 7.9 | 7.9 | 7.8 |
| GG | MAPQ >= 10 | 6.6 | 6.5 | 6.3 | 5.9 | 6.3 | 6.6 | 6.0 | 5.7 | 6.1 | 6.2 | 6.1 | 5.9 | 6.0 | 6.1 | 6.4 | 6.3 | 6.3 | 6.5 | 6.7 | 6.7 | 6.8 | 6.6 | 6.6 | 6.9 | 6.8 | 7.0 | 6.7 | 6.9 | 6.9 | 7.0 | 7.1 | 6.7 | 6.7 | 6.9 | 6.7 | 6.7 | 6.8 | 6.6 | 6.7 | 6.8 | 6.7 | 6.6 | 6.6 | 6.5 | 6.7 | 6.4 | 6.6 | 6.7 | 6.7 | 6.5 | 6.7 | 6.6 | 6.6 | 6.6 | 6.8 | 6.7 | 6.5 | 6.5 | 6.6 | 6.7 | 6.7 | 6.5 | 6.4 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.8 | 6.7 | 6.8 | 6.7 | 6.8 |
| GG | MAPQ >= 3 | 6.3 | 5.9 | 5.8 | 5.3 | 5.6 | 5.9 | 5.3 | 5.2 | 5.5 | 5.6 | 5.5 | 5.4 | 5.5 | 5.6 | 5.9 | 5.9 | 6.0 | 6.3 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.6 | 6.6 | 6.7 | 6.5 | 6.6 | 6.6 | 6.8 | 6.8 | 6.5 | 6.5 | 6.5 | 6.2 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.1 | 6.1 | 6.0 | 5.9 | 6.1 | 6.0 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.4 | 6.4 | 6.6 | 6.4 | 6.3 | 6.5 | 6.4 | 6.4 | 6.3 | 6.2 | 6.3 | 6.4 | 6.3 | 6.2 | 6.1 | 6.2 | 6.5 | 6.4 | 6.5 | 6.3 | 6.3 |
| GG | MAPQ < 3 | 6.1 | 5.8 | 5.8 | 5.5 | 5.8 | 5.9 | 5.5 | 5.2 | 5.6 | 5.6 | 5.6 | 5.6 | 5.7 | 5.8 | 5.9 | 5.9 | 5.9 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.1 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 |
| GG | Unmapped | 5.6 | 5.3 | 5.3 | 5.3 | 17.8 | 5.5 | 5.2 | 5.1 | 5.5 | 5.6 | 5.5 | 5.4 | 17.9 | 5.8 | 5.8 | 5.9 | 5.9 | 6.2 | 6.5 | 6.6 | 6.9 | 19.1 | 7.0 | 7.3 | 7.4 | 7.5 | 7.2 | 7.3 | 7.6 | 7.7 | 7.9 | 7.9 | 7.9 | 8.0 | 8.1 | 8.7 | 8.0 | 8.0 | 8.2 | 8.3 | 8.3 | 8.2 | 8.2 | 8.3 | 8.4 | 8.4 | 8.6 | 8.8 | 8.7 | 8.8 | 9.0 | 9.0 | 9.0 | 9.4 | 9.6 | 9.5 | 9.5 | 9.7 | 9.9 | 10.0 | 10.2 | 10.0 | 10.0 | 10.1 | 10.4 | 10.7 | 10.1 | 10.2 | 10.2 | 10.2 | 10.1 | 10.0 | 10.1 | 10.1 |
| GT | MAPQ >= 30 | 5.6 | 4.9 | 4.8 | 4.9 | 5.2 | 5.0 | 5.3 | 5.0 | 4.9 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 |
| GT | MAPQ >= 20 | 5.8 | 5.1 | 5.0 | 5.1 | 5.3 | 5.1 | 5.5 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.0 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 4.9 | 5.0 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 |
| GT | MAPQ >= 10 | 6.0 | 5.3 | 5.1 | 5.2 | 5.4 | 5.2 | 5.6 | 5.3 | 5.2 | 5.4 | 5.2 | 5.3 | 5.1 | 5.3 | 5.2 | 5.3 | 5.2 | 5.3 | 5.1 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.4 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.1 | 5.1 | 5.4 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 4.9 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 4.9 | 4.8 | 4.8 | 4.7 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 5.0 | 5.0 | 4.9 | 4.8 | 4.9 | 4.9 |
| GT | MAPQ >= 3 | 6.0 | 5.2 | 5.1 | 5.2 | 5.3 | 5.2 | 5.5 | 5.2 | 5.1 | 5.3 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.3 | 5.3 | 5.2 | 5.1 | 5.2 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.1 | 5.2 | 5.2 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.3 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.0 | 5.1 | 4.9 | 5.0 | 4.9 | 4.7 | 5.0 | 5.0 | 5.1 | 5.0 | 5.2 | 5.0 | 5.0 | 5.1 | 5.2 | 5.0 | 4.9 | 5.0 | 4.9 |
| GT | MAPQ < 3 | 5.8 | 5.0 | 4.9 | 5.0 | 5.2 | 5.0 | 5.4 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 |
| GT | Unmapped | 5.0 | 4.3 | 4.1 | 4.3 | 4.4 | 4.2 | 4.5 | 4.3 | 4.2 | 4.2 | 4.2 | 4.2 | 4.3 | 16.5 | 4.3 | 4.2 | 4.3 | 4.2 | 4.2 | 4.1 | 4.2 | 4.1 | 4.1 | 4.1 | 4.2 | 4.1 | 4.3 | 4.2 | 4.2 | 4.2 | 4.2 | 4.3 | 4.3 | 4.3 | 4.4 | 15.7 | 4.3 | 4.3 | 4.2 | 4.3 | 4.2 | 4.2 | 4.3 | 4.2 | 4.3 | 4.2 | 4.4 | 16.1 | 4.2 | 4.1 | 4.0 | 4.2 | 4.1 | 4.2 | 15.9 | 4.0 | 4.2 | 4.1 | 4.0 | 4.0 | 4.0 | 4.0 | 4.1 | 4.1 | 3.9 | 4.2 | 4.0 | 4.0 | 4.0 | 3.9 | 4.0 | 4.0 | 4.0 | 4.1 |
| TA | MAPQ >= 30 | 5.2 | 6.8 | 6.4 | 6.7 | 6.3 | 6.1 | 6.0 | 6.1 | 6.2 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.6 | 5.7 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 |
| TA | MAPQ >= 20 | 4.3 | 5.7 | 5.4 | 5.6 | 5.2 | 5.1 | 4.9 | 5.0 | 5.1 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.5 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.6 | 4.5 | 4.5 | 4.6 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.4 | 4.3 | 4.4 |
| TA | MAPQ >= 10 | 4.2 | 5.6 | 5.2 | 5.6 | 5.2 | 5.1 | 4.8 | 4.9 | 5.0 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.8 | 4.7 | 4.6 | 4.6 | 4.6 | 4.4 | 4.5 | 4.4 | 4.3 | 4.5 | 4.5 | 4.4 | 4.5 | 4.4 | 4.5 | 4.5 | 4.4 | 4.5 | 4.5 | 4.5 | 4.4 | 4.5 | 4.4 | 4.5 | 4.5 | 4.4 | 4.6 | 4.5 | 4.5 | 4.7 | 4.5 | 4.5 | 4.5 | 4.4 | 4.4 | 4.5 | 4.5 | 4.6 | 4.6 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 |
| TA | MAPQ >= 3 | 4.6 | 6.2 | 5.8 | 6.2 | 5.7 | 5.7 | 5.4 | 5.5 | 5.5 | 5.4 | 5.4 | 5.3 | 5.4 | 5.5 | 5.4 | 5.5 | 5.2 | 5.2 | 5.2 | 5.2 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.8 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 5.1 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.2 | 5.0 | 5.1 | 5.0 | 4.7 | 5.0 | 5.2 | 5.1 | 5.2 | 5.3 | 5.3 | 5.0 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.0 | 4.9 |
| TA | MAPQ < 3 | 4.4 | 5.9 | 5.5 | 5.9 | 5.4 | 5.3 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 |
| TA | Unmapped | 3.6 | 4.8 | 4.5 | 4.7 | 4.4 | 4.2 | 4.1 | 4.1 | 4.1 | 4.0 | 3.9 | 3.9 | 3.8 | 3.8 | 3.8 | 3.8 | 3.7 | 3.7 | 3.6 | 3.6 | 3.5 | 3.6 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.4 | 3.5 | 3.4 | 3.4 | 3.4 | 3.4 | 3.4 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.2 | 3.3 | 3.2 | 3.3 | 3.2 | 3.4 | 15.1 | 3.2 | 3.2 | 3.2 | 3.2 | 3.2 | 3.2 | 3.3 | 3.2 | 3.2 | 3.3 | 3.2 | 3.2 | 3.2 | 3.2 | 3.3 | 3.3 | 3.3 | 3.4 | 3.2 | 3.3 | 3.2 | 3.3 | 3.2 | 3.3 | 3.5 |
| TC | MAPQ >= 30 | 3.9 | 6.3 | 6.0 | 6.0 | 6.2 | 6.0 | 6.3 | 6.3 | 6.4 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| TC | MAPQ >= 20 | 3.9 | 6.5 | 6.2 | 6.2 | 6.4 | 6.1 | 6.6 | 6.6 | 6.6 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.1 | 6.2 | 6.1 | 6.4 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.4 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.1 | 6.2 |
| TC | MAPQ >= 10 | 3.9 | 6.7 | 6.4 | 6.4 | 6.6 | 6.1 | 6.7 | 6.8 | 6.9 | 6.6 | 6.7 | 6.6 | 6.8 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.3 | 6.4 | 6.5 | 6.5 | 6.4 | 6.6 | 6.4 | 6.5 | 6.4 | 6.1 | 6.4 | 6.3 | 6.7 | 6.4 | 6.6 | 6.4 | 6.5 | 6.4 | 6.5 | 6.5 | 6.6 | 6.8 | 6.7 | 6.6 | 6.5 | 6.6 | 6.8 | 6.6 | 6.6 | 6.6 | 6.7 | 6.6 | 6.7 | 6.4 | 6.7 | 6.6 | 6.6 | 6.7 | 6.4 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 |
| TC | MAPQ >= 3 | 3.9 | 6.7 | 6.3 | 6.4 | 6.4 | 6.0 | 6.5 | 6.4 | 6.5 | 6.2 | 6.4 | 6.5 | 6.5 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.5 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.6 | 6.5 | 6.4 | 6.2 | 6.0 | 6.2 | 6.2 | 6.5 | 6.3 | 6.5 | 6.3 | 6.3 | 6.3 | 6.2 | 6.4 | 6.4 | 6.8 | 6.6 | 6.6 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.3 | 6.5 | 6.4 | 6.5 | 6.5 | 6.3 | 6.3 | 6.1 | 6.1 | 6.1 | 6.0 | 6.2 | 6.0 | 5.9 | 5.9 | 5.9 | 5.7 | 5.9 | 5.9 | 6.0 |
| TC | MAPQ < 3 | 4.0 | 6.7 | 6.4 | 6.4 | 6.5 | 6.2 | 6.7 | 6.8 | 6.7 | 6.5 | 6.6 | 6.5 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.6 | 6.5 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.4 | 6.5 | 6.5 | 6.5 | 6.6 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.4 | 6.3 | 6.4 |
| TC | Unmapped | 3.7 | 6.0 | 18.4 | 5.9 | 5.9 | 5.6 | 5.9 | 6.1 | 6.0 | 5.7 | 5.6 | 5.6 | 5.8 | 5.7 | 5.5 | 17.6 | 5.3 | 5.6 | 5.4 | 5.3 | 5.1 | 5.2 | 5.4 | 5.3 | 5.2 | 5.1 | 5.1 | 5.4 | 5.3 | 5.1 | 5.0 | 5.1 | 5.3 | 5.4 | 5.3 | 5.4 | 16.7 | 5.5 | 5.4 | 5.5 | 16.8 | 5.4 | 5.7 | 17.6 | 5.5 | 17.3 | 5.3 | 5.5 | 5.4 | 5.2 | 5.2 | 5.2 | 5.4 | 5.4 | 5.3 | 16.9 | 5.1 | 5.6 | 17.4 | 5.1 | 5.2 | 5.3 | 5.3 | 5.4 | 5.3 | 5.1 | 5.2 | 5.4 | 5.3 | 5.2 | 5.1 | 5.3 | 5.6 | 5.6 |
| TG | MAPQ >= 30 | 5.5 | 7.2 | 7.1 | 7.6 | 7.3 | 7.4 | 6.9 | 7.5 | 7.6 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 |
| TG | MAPQ >= 20 | 5.8 | 7.6 | 7.4 | 8.0 | 7.7 | 7.8 | 7.3 | 8.0 | 7.9 | 7.7 | 7.7 | 7.7 | 7.9 | 7.9 | 7.7 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 7.9 | 7.9 | 8.0 | 8.0 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 8.0 | 7.9 | 8.0 | 7.9 | 7.8 | 7.8 | 7.9 | 7.9 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.8 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.3 |
| TG | MAPQ >= 10 | 5.8 | 7.6 | 7.6 | 8.0 | 7.8 | 7.8 | 7.3 | 8.1 | 8.0 | 7.6 | 7.6 | 7.6 | 8.0 | 7.9 | 7.7 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 8.0 | 7.9 | 7.8 | 7.9 | 7.8 | 8.0 | 8.0 | 7.9 | 8.2 | 8.1 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.1 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 7.9 | 7.8 | 7.9 | 7.7 | 7.6 | 7.8 | 7.7 | 7.7 | 8.0 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.6 | 7.5 | 7.7 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.6 | 7.9 | 7.8 | 7.7 | 7.6 | 7.7 | 7.6 |
| TG | MAPQ >= 3 | 5.7 | 7.4 | 7.3 | 7.7 | 7.7 | 7.8 | 7.0 | 7.8 | 7.7 | 7.3 | 7.2 | 7.4 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.4 | 7.6 | 7.6 | 7.6 | 7.8 | 7.7 | 7.6 | 7.8 | 7.6 | 7.8 | 7.8 | 7.7 | 7.9 | 7.9 | 7.7 | 7.6 | 7.8 | 7.8 | 7.7 | 8.0 | 7.8 | 8.2 | 7.9 | 7.9 | 8.1 | 8.0 | 8.0 | 7.9 | 7.9 | 7.7 | 7.8 | 7.7 | 7.4 | 7.6 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.5 | 7.5 | 7.5 | 7.7 | 7.6 | 7.9 | 7.9 | 8.0 | 7.9 | 8.0 | 7.8 | 7.8 | 8.1 | 7.8 | 8.0 | 7.7 | 7.6 | 7.6 |
| TG | MAPQ < 3 | 5.7 | 7.4 | 7.3 | 7.9 | 7.6 | 7.6 | 7.1 | 7.8 | 7.8 | 7.5 | 7.5 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.8 | 7.6 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 |
| TG | Unmapped | 4.6 | 6.2 | 6.2 | 6.5 | 6.2 | 6.1 | 5.8 | 6.4 | 6.4 | 6.1 | 6.0 | 6.1 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.1 | 6.1 | 6.2 | 6.3 | 6.3 | 18.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.1 | 6.2 | 6.3 | 6.2 | 6.2 | 6.0 | 6.1 | 6.2 | 6.2 | 6.1 | 6.0 | 6.0 | 6.1 | 6.2 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 17.8 | 5.9 | 5.9 | 6.1 | 5.8 | 5.9 | 5.7 | 6.0 | 6.0 | 6.0 | 17.6 | 5.7 | 5.7 | 6.1 | 17.7 | 5.6 | 5.6 | 5.7 | 5.6 | 5.6 | 5.5 | 5.6 | 5.7 | 5.8 |
| TT | MAPQ >= 30 | 6.8 | 9.7 | 9.6 | 9.3 | 9.0 | 9.2 | 9.6 | 9.9 | 9.8 | 9.6 | 9.6 | 9.5 | 9.4 | 9.2 | 9.1 | 9.0 | 8.9 | 8.8 | 8.8 | 8.7 | 8.8 | 8.8 | 8.9 | 8.9 | 8.9 | 8.9 | 8.8 | 8.8 | 8.8 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.7 |
| TT | MAPQ >= 20 | 6.4 | 9.2 | 9.0 | 8.8 | 8.4 | 8.5 | 8.9 | 9.0 | 8.9 | 8.7 | 8.6 | 8.6 | 8.5 | 8.4 | 8.2 | 8.0 | 7.9 | 7.9 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 8.0 | 8.0 | 8.0 | 7.9 | 8.0 | 8.0 | 8.1 | 8.2 | 8.1 | 8.1 | 8.0 | 8.0 | 7.9 | 7.9 | 7.8 | 7.7 | 7.7 | 7.8 |
| TT | MAPQ >= 10 | 6.7 | 9.5 | 9.4 | 9.1 | 8.7 | 8.8 | 9.1 | 9.2 | 9.0 | 8.7 | 8.7 | 8.8 | 8.7 | 8.4 | 8.3 | 8.1 | 8.1 | 8.0 | 8.0 | 7.8 | 7.9 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.4 | 7.6 | 7.6 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.2 | 7.3 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.5 | 7.5 | 7.6 |
| TT | MAPQ >= 3 | 7.1 | 10.0 | 10.0 | 9.7 | 9.3 | 9.4 | 9.7 | 9.8 | 9.7 | 9.4 | 9.5 | 9.4 | 9.3 | 9.1 | 9.0 | 8.7 | 8.6 | 8.6 | 8.7 | 8.4 | 8.6 | 8.5 | 8.4 | 8.4 | 8.4 | 8.6 | 8.5 | 8.4 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.2 | 8.3 | 8.3 | 8.2 | 8.3 | 8.4 | 8.5 | 8.4 | 8.2 | 8.1 | 8.2 | 8.0 | 7.8 | 7.9 | 8.1 | 8.1 | 8.0 | 8.1 | 8.2 | 8.3 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.1 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.1 | 8.2 | 8.1 | 8.1 | 8.1 | 8.2 | 8.4 |
| TT | MAPQ < 3 | 6.7 | 9.6 | 9.5 | 9.1 | 8.8 | 9.0 | 9.4 | 9.6 | 9.5 | 9.2 | 9.2 | 9.2 | 9.1 | 8.8 | 8.7 | 8.6 | 8.5 | 8.5 | 8.5 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.5 | 8.4 | 8.4 | 8.4 | 8.3 | 8.2 | 8.2 | 8.3 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.3 | 8.3 | 8.2 | 8.2 | 8.2 | 8.2 | 8.1 | 8.0 | 8.1 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.3 |
| TT | Unmapped | 5.4 | 8.2 | 8.2 | 8.1 | 7.9 | 8.2 | 9.0 | 9.3 | 9.3 | 9.2 | 9.4 | 9.8 | 9.8 | 9.9 | 22.0 | 9.9 | 10.2 | 10.2 | 10.1 | 10.1 | 10.3 | 10.7 | 10.7 | 10.6 | 10.4 | 10.3 | 10.3 | 10.1 | 9.9 | 9.6 | 9.6 | 9.8 | 9.6 | 9.5 | 9.4 | 9.4 | 9.6 | 9.5 | 9.5 | 20.9 | 9.4 | 9.7 | 9.8 | 9.6 | 9.5 | 9.5 | 9.5 | 9.5 | 9.3 | 9.1 | 9.0 | 9.1 | 9.0 | 8.8 | 8.7 | 8.7 | 9.0 | 20.8 | 8.5 | 8.2 | 8.2 | 8.2 | 8.4 | 20.1 | 7.9 | 7.6 | 7.8 | 7.6 | 7.5 | 7.4 | 7.5 | 7.7 | 7.7 | 7.7 |
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT AG CT CA |
AA TT AT AG TG |
AA TT AT CA CT |
AA TT TG AG AT |
AA TT AT AG TG |
AA TT AT TG CA |
AA TT AT CT CA |
TT AA AT TG CT |
TT AA TG CA AT |
TT AA CA TG AT |
TT AA CA TG AT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG AT CA CT |
TT AA TG AG AT |
TT AA CA AT TG |
TT AA TG AG CA |
AA TT TG AG CA |
TT AA TG CA AG |
TT AA TG CT AT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG CT |
TT TG AA CA CT |
TT TG CA AA AG |
TT TG CA AA CT |
TG TT CA AA CT |
TG TT CA AA AG |
TT TG CA AA CT |
TG TT CA AA CT |
TG TT CA AA AG |
TT TG CA AA AG |
TG AA TT CA AG |
TG TT AA CA AG |
TG TT AA CA AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA AA TT AG |
TG CA AA TT AG |
TG CA AA TT AG |
TG CA AA TT AG |
TG CA TT AA GG |
TG CA TT AA AG |
TG CA AA TT AG |
TG CA AA TT AG |
TG CA AA TT AG |
TG CA TT AA AG |
TG CA AA TT GG |
TG CA AA TT GG |
TG CA TT AA CT |
TG TT CA AA CT |
TG TT CA AA CT |
TG CA TT AA GG |
TG CA AA TT AG |
TG TT AA CA GG |
TG CA TT AA GG |
CA TG AA TT GG |
AA TT TG CA GG |
TT TG GG AA CA |
TT AA TG GG CA |
TT TG AA CA GG |
TT TG AA CA GG |
TT AA GG TG CA |
TT AA TG GG CA |
TT AA GG TG CA |
TT AA TG GG CA |
TT AA TG GG CA |
AA TT GG CA TG |
AA TT GG CA TG |
AA TT GG TG CA |
TT AA GG TG CA |
TT AA GG TG CA |
TT AA GG TG CA |
AA TT GG CA TG |
AA TT GG CA TG |
AA TT GG CA TG |
AA TT GG TG CA |
AA GG TT CA TG |
AA GG TT CA TG |
AA GG TT CA TG |
AA GG TT CA TG |
AA GG TT CA TG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG AT CA CT |
TT AA TG AG AT |
TT AA TG CA AT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA TG AT CT |
TT TG AA CA CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT CA AA TG CT |
TT TG AA CA CT |
TT TG CA AA CT |
TT TG CA AA CT |
TT TG CA AA CT |
TG CA TT AA CT |
TT TG CA AA CT |
TG CA TT AA CT |
TG TT CA AA AG |
CA TG TT AA AG |
TG AA CA TT AG |
CA TG TT AA AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA AA TT AG |
TG CA AA TT CT |
TG CA AA TT AG |
TG CA AA TT CT |
TG CA AA TT CT |
CA TG AA TT CT |
CA TG AA TT AG |
CA TG AA TT CT |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA TT AA CT |
TG CA AA CT TT |
CA TG AA TT CT |
CA AA TG TT CT |
AA TG CA CT TT |
CA TG AA TT CT |
AA CA TG CT AG |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG CT TT |
CA AA TG CT TT |
CA TG AA TT CT |
AA CA TG CT TT |
AA CA TG TT CT |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG TT CT |
AA CA TG CT TT |
AA CA CT TG TT |
AA CA TG CT TT |
AA CA TG TT CT |
AA CA TG TT CT |
AA TG CA TT CT |
AA CA TG TT CT |
AA CA TG TT CT |
AA CA TG TT AG |
AA TG CA TT CT |
AA CA TG TT AG |
AA CA TG TT AG |
AA CA TG TT AG |
AA CA TG TT AG |
AA CA TG TT AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT AG CA CT |
TT AA AT TG AG |
TT AA AT CA TG |
TT AA CA TG AT |
TT AA TG AT CA |
TT AA CA TG AT |
TT AA AT CA TG |
TT AA CA TG AT |
TT AA CA TG AT |
TT AA CA TG AT |
TT AA CA TG AT |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA CA TG AT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AT |
AA TT CA TG CT |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT TG CA AT |
AA TT TG CA AT |
AA TT TG CA AT |
AA TT TG CA AT |
AA TT TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT TG CA AT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT AG CA CT |
TT AA AT TG AG |
TT AA AT CA TG |
TT AA TG CA AT |
AA TT TG AT CA |
AA TT CA TG AT |
TT AA AT TG CA |
TT AA TG CA AT |
TT AA TG CA AT |
TT AA CA TG AT |
TT AA CA TG AT |
TT AA CA TG AT |
TT AA TG CA AT |
TT AA TG CA AT |
TT AA CA TG CT |
TT AA CA TG AT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG CT |
AA TT CA TG AT |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA CA TG AG |
AA TT CA TG AG |
TT AA CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
TT AA CA TG AG |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AT |
AA TT TG CA AT |
AA TT TG CA CT |
TT AA CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
GA AA AT AG CA |
AT AA TT GA TG |
TC TT AA AT CA |
CG TT AA TG CA |
GG AA TT TG AT |
GA TT AA CA AT |
AA TT AT CT TC |
AG TT AA TG TC |
GA TT AA TG CA |
AG TT AA CA TG |
GC TT AA CA TG |
CG TT AA TG CA |
GG TT AA TG CA |
GT TT AA TG CA |
TT AA TG CA GG |
TC TT AA TG CA |
CA TT AA TG GG |
AG TT AA TG GG |
GC TT AA GG TG |
CA TT AA GG TG |
AG TT AA GG TG |
GG TT AA TG CA |
GA TT AA GG TG |
AA TT GG TG CA |
AT TT AA GG TG |
TG TT AA GG CA |
GC TT AA GG TG |
CC TT AA GG TG |
CG TT GG AA TG |
GA TT GG AA TG |
AG TT GG AA TG |
GA TT GG AA TG |
AC TT GG AA TG |
CC TT GG AA TG |
CG TT GG AA TG |
GT TT GG AA TG |
TC TT GG AA TG |
CA TT GG AA TG |
AT TT GG AA TG |
TT GG AA TG CA |
TC TT GG AA TG |
CA TT GG AA TG |
AT TT GG AA TG |
TC TT GG AA TG |
CT TT GG AA CC |
TC TT GG AA CC |
CG TT GG AA CC |
GT TT GG AA CC |
TA TT GG AA CC |
AT TT GG AA CC |
TG TT GG AA CC |
GC TT GG AA CC |
CC GG TT AA TG |
CG GG TT AA CC |
GT GG TT AA CC |
TC GG TT AA CC |
CT GG TT AA CC |
TT GG AA CC TG |
TC GG TT CC AA |
CT GG TT AA CC |
TG GG TT AA CC |
GC GG TT AA CC |
CT GG TT AA CC |
TT GG AA CC TG |
TG GG TT AA CC |
GA GG TT AA CC |
AA GG TT CC GA |
AA GG TT CC TG |
AA GG TT CC TG |
AA GG TT CC GA |
AA GG TT CC GA |
AA GG TT CC AG |
AA GG TT CC AG |
AA GG TT CC AG |
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 | Unmapped | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value |
| TGTAATCCCA | 762167 | 0.0e+00 | TTTTTTTTTT | 167964 | 0.0e+00 | GGAGGCTGAG | 54841 | 0.0e+00 | CTCCTGACCT | 12815 | 0.0e+00 | GGAGGCTGAG | 102212 | 0.0e+00 | TTTTTTTTTT | 2970693 | 0.0e+00 |
| CCTGTAATCC | 745785 | 0.0e+00 | AAAAAAAAAA | 151110 | 0.0e+00 | AAAAAAAAAA | 54411 | 0.0e+00 | GGAGGCTGAG | 11626 | 0.0e+00 | GAGGCTGAGG | 101010 | 0.0e+00 | AAAAAAAAAA | 1480619 | 0.0e+00 |
| GGGATTACAG | 543043 | 0.0e+00 | GGAGGCTGAG | 66845 | 0.0e+00 | GAGGCTGAGG | 53739 | 0.0e+00 | GAGGCTGAGG | 11619 | 0.0e+00 | AGGCTGAGGC | 92138 | 0.0e+00 | GATCGGAAGA | 470090 | 0.0e+00 |
| CTGGGATTAC | 527115 | 0.0e+00 | GAGGCTGAGG | 66633 | 0.0e+00 | AGGCTGAGGC | 49863 | 0.0e+00 | TCCTGACCTC | 11349 | 0.0e+00 | TCCCAGCTAC | 90967 | 0.0e+00 | ATCGGAAGAG | 469270 | 0.0e+00 |
| GGCTGGAGTG | 508814 | 0.0e+00 | AGGCTGAGGC | 60659 | 0.0e+00 | CTCAGCCTCC | 48946 | 0.0e+00 | AGGCTGAGGC | 10972 | 0.0e+00 | CCCAGCTACT | 90221 | 0.0e+00 | TCGGAAGAGC | 466557 | 0.0e+00 |
| ACTTTGGGAG | 467220 | 0.0e+00 | TAATCCCAGC | 57030 | 0.0e+00 | CCTCAGCCTC | 48482 | 0.0e+00 | CCTCAGCCTC | 10798 | 0.0e+00 | CTCAGCCTCC | 89090 | 0.0e+00 | CGGAAGAGCG | 466443 | 0.0e+00 |
| AGTGCAGTGG | 444283 | 0.0e+00 | GGCTGAGGCA | 55624 | 0.0e+00 | GGCTGAGGCA | 48093 | 0.0e+00 | CTCAGCCTCC | 10740 | 0.0e+00 | GGCTGAGGCA | 88722 | 0.0e+00 | GGAAGAGCGG | 464257 | 0.0e+00 |
| GCACTTTGGG | 433962 | 0.0e+00 | TGTAATCCCA | 55322 | 0.0e+00 | TCCCAGCTAC | 47933 | 0.0e+00 | GGCTGAGGCA | 10692 | 0.0e+00 | ATTCCATTCC | 88644 | 0.0e+00 | GGGGGGGGGG | 461991 | 0.0e+00 |
| CCCAGCACTT | 420150 | 0.0e+00 | TCCCAGCTAC | 54877 | 0.0e+00 | CCCAGCTACT | 47612 | 0.0e+00 | GCTGAGGCAG | 10530 | 0.0e+00 | CCTCAGCCTC | 88574 | 0.0e+00 | GAAGAGCGGT | 460813 | 0.0e+00 |
| CCAGCCTGGG | 366411 | 0.0e+00 | GTAATCCCAG | 54386 | 0.0e+00 | GCTGAGGCAG | 46791 | 0.0e+00 | CTGAGGCAGG | 10464 | 0.0e+00 | TTCCATTCCA | 88564 | 0.0e+00 | AAGAGCGGTT | 459515 | 0.0e+00 |
| TGCTGGGATT | 362440 | 0.0e+00 | CCCAGCTACT | 54376 | 0.0e+00 | AAATACAAAA | 46490 | 0.0e+00 | TCCCAGCTAC | 10362 | 0.0e+00 | TCTCCTGCCT | 87247 | 0.0e+00 | AGAGCGGTTC | 458313 | 0.0e+00 |
| CAAAGTGCTG | 358178 | 0.0e+00 | CTGTAATCCC | 54009 | 0.0e+00 | AAAATACAAA | 46075 | 0.0e+00 | CCCAGCTACT | 10300 | 0.0e+00 | GCTGAGGCAG | 86993 | 0.0e+00 | GAGCGGTTCA | 457201 | 0.0e+00 |
| GTGCAGTGGC | 348420 | 0.0e+00 | GCTGAGGCAG | 53827 | 0.0e+00 | CTGAGGCAGG | 45564 | 0.0e+00 | GCCTCAGCCT | 10225 | 0.0e+00 | TTCTCCTGCC | 86943 | 0.0e+00 | TCAGCAGGAA | 457193 | 0.0e+00 |
| AGTGCTGGGA | 346036 | 0.0e+00 | CCTGTAATCC | 52997 | 0.0e+00 | GCCTCAGCCT | 44988 | 0.0e+00 | AAATACAAAA | 10043 | 0.0e+00 | TCCATTCCAT | 86618 | 0.0e+00 | AGCGGTTCAG | 456686 | 0.0e+00 |
| GTGCTGGGAT | 343812 | 0.0e+00 | CTGAGGCAGG | 52455 | 0.0e+00 | AAAAATACAA | 44630 | 0.0e+00 | AAAATACAAA | 10010 | 0.0e+00 | CTCCTGACCT | 85790 | 0.0e+00 | GGTTCAGCAG | 456092 | 0.0e+00 |
| TTGGGAGGCT | 338234 | 0.0e+00 | AAATACAAAA | 49950 | 0.0e+00 | CTCCTGACCT | 42842 | 0.0e+00 | TCTCCTGCCT | 9872 | 0.0e+00 | CCATTCCATT | 85707 | 0.0e+00 | GTTCAGCAGG | 455638 | 0.0e+00 |
| TGCAGTGAGC | 338195 | 0.0e+00 | AAAATACAAA | 49308 | 0.0e+00 | CTCACTGCAA | 42649 | 0.0e+00 | TTCTCCTGCC | 9818 | 0.0e+00 | GGAATGGAAT | 85454 | 0.0e+00 | CGGTTCAGCA | 455615 | 0.0e+00 |
| CTCCAGCCTG | 319389 | 0.0e+00 | CTCAGCCTCC | 49197 | 0.0e+00 | AAAAATTAGC | 42514 | 0.0e+00 | AAAAATACAA | 9787 | 0.0e+00 | TGGAATGGAA | 85425 | 0.0e+00 | CAGCAGGAAT | 455518 | 0.0e+00 |
| ACTCCAGCCT | 318372 | 0.0e+00 | CCTCAGCCTC | 48583 | 0.0e+00 | GCTCACTGCA | 42162 | 0.0e+00 | TAAAAATACA | 9443 | 0.0e+00 | CTGAGGCAGG | 85370 | 0.0e+00 | TTCAGCAGGA | 455354 | 0.0e+00 |
| TTGGGAGGCC | 307978 | 0.0e+00 | GGGAGGCTGA | 47982 | 0.0e+00 | TCTACTAAAA | 42106 | 0.0e+00 | TTTTAGTAGA | 9379 | 0.0e+00 | AAATACAAAA | 84840 | 0.0e+00 | GCGGTTCAGC | 455343 | 0.0e+00 |