Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.
Mean base quality of reads with low and high mapping quality.
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mer | Q | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | MAPQ >= 30 | 10.6 | 10.0 | 9.4 | 9.2 | 9.5 | 9.4 | 9.4 | 9.2 | 9.2 | 9.3 | 9.3 | 9.2 | 9.1 | 9.1 | 9.0 | 8.9 | 8.8 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.8 | 8.7 | 8.8 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 |
| AA | MAPQ >= 20 | 9.5 | 8.9 | 8.3 | 8.1 | 8.4 | 8.3 | 8.3 | 8.1 | 8.0 | 8.3 | 8.3 | 8.1 | 8.1 | 8.0 | 7.8 | 7.8 | 7.8 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 8.1 | 8.1 | 8.2 | 8.2 | 8.1 | 8.2 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 |
| AA | MAPQ >= 10 | 9.1 | 8.6 | 8.0 | 7.8 | 8.2 | 8.1 | 8.1 | 7.8 | 7.9 | 8.1 | 8.1 | 8.0 | 7.8 | 7.7 | 7.5 | 7.6 | 7.6 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.6 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.7 | 7.6 | 7.6 | 7.5 | 7.7 | 7.5 | 7.4 | 7.5 | 7.5 | 7.8 | 7.7 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 8.0 | 8.1 | 8.2 | 8.2 | 8.3 | 8.2 | 8.2 | 8.2 | 8.3 | 8.2 | 8.3 | 8.3 | 8.4 | 8.4 | 8.4 |
| AA | MAPQ >= 3 | 9.9 | 9.4 | 8.8 | 8.6 | 8.8 | 8.7 | 8.8 | 8.6 | 8.9 | 9.0 | 9.0 | 8.9 | 8.6 | 8.5 | 8.2 | 8.4 | 8.3 | 8.2 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 7.9 | 8.1 | 8.0 | 8.0 | 8.0 | 8.1 | 8.1 | 8.2 | 8.2 | 8.3 | 8.3 | 8.3 | 8.3 | 8.5 | 8.5 | 8.4 | 8.2 | 8.2 | 8.2 | 8.1 | 8.2 | 8.1 | 8.4 | 8.5 | 8.5 | 8.3 | 8.4 | 8.4 | 8.4 | 8.4 | 8.5 | 8.6 | 8.5 | 8.5 | 8.5 | 8.4 | 8.5 | 8.6 | 8.7 | 8.7 | 8.8 | 8.5 | 8.5 | 8.7 | 8.8 | 8.8 | 8.9 | 8.9 | 8.9 | 8.9 | 8.9 |
| AA | MAPQ < 3 | 9.8 | 9.4 | 8.7 | 8.5 | 8.8 | 8.7 | 8.8 | 8.5 | 8.5 | 8.7 | 8.8 | 8.6 | 8.5 | 8.4 | 8.3 | 8.3 | 8.3 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.1 | 8.1 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.2 | 8.1 | 8.2 | 8.2 | 8.2 | 8.2 | 8.1 | 8.2 | 8.2 | 8.1 | 8.2 | 8.2 | 8.3 | 8.3 | 8.2 | 8.2 | 8.3 | 8.3 | 8.3 | 8.2 | 8.3 | 8.3 | 8.4 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.5 | 8.5 | 8.4 | 8.5 | 8.4 | 8.4 | 8.5 | 8.4 |
| AA | Unmapped | 9.8 | 9.2 | 8.5 | 8.1 | 8.6 | 8.8 | 15.0 | 8.6 | 8.4 | 8.8 | 9.0 | 8.9 | 9.0 | 8.7 | 8.9 | 8.9 | 8.9 | 8.8 | 8.6 | 8.8 | 8.9 | 8.9 | 8.8 | 14.8 | 8.8 | 8.8 | 8.7 | 8.6 | 8.5 | 8.7 | 8.8 | 8.8 | 8.7 | 8.5 | 8.7 | 8.7 | 8.7 | 8.6 | 8.4 | 14.4 | 8.6 | 8.6 | 8.3 | 8.2 | 8.2 | 8.3 | 8.2 | 8.1 | 7.9 | 8.0 | 8.0 | 8.0 | 7.9 | 7.7 | 7.9 | 8.0 | 8.0 | 7.8 | 7.6 | 7.8 | 7.9 | 7.9 | 7.8 | 7.6 | 7.7 | 8.0 | 13.7 | 13.9 | 13.8 | 13.8 | 13.7 | 13.1 | 12.3 | 11.7 |
| AC | MAPQ >= 30 | 5.4 | 5.0 | 4.9 | 5.0 | 5.2 | 5.0 | 5.1 | 5.0 | 4.9 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 |
| AC | MAPQ >= 20 | 5.4 | 5.0 | 4.9 | 4.9 | 5.2 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 |
| AC | MAPQ >= 10 | 5.1 | 4.8 | 4.8 | 4.9 | 5.1 | 5.0 | 5.2 | 4.8 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.2 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.0 | 5.2 | 5.1 | 5.1 | 5.1 | 5.0 | 5.2 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.3 | 5.2 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 |
| AC | MAPQ >= 3 | 5.1 | 4.8 | 4.9 | 5.0 | 5.1 | 5.0 | 5.1 | 4.9 | 5.1 | 5.0 | 5.0 | 5.1 | 5.2 | 5.0 | 5.2 | 5.0 | 5.2 | 5.1 | 5.1 | 5.0 | 5.2 | 5.0 | 5.0 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.4 | 5.2 | 5.1 | 5.0 | 5.2 | 5.0 | 5.2 | 5.1 | 5.1 | 5.3 | 5.1 | 5.2 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 |
| AC | MAPQ < 3 | 5.2 | 5.0 | 4.9 | 4.9 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 |
| AC | Unmapped | 5.5 | 4.9 | 4.8 | 4.8 | 5.0 | 4.7 | 4.9 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.7 | 4.6 | 4.6 | 4.6 | 4.7 | 4.6 | 4.6 | 4.5 | 4.7 | 4.5 | 4.5 | 4.4 | 4.6 | 4.5 | 4.6 | 4.5 | 4.5 | 4.6 | 4.6 | 4.5 | 10.6 | 4.4 | 4.4 | 4.4 | 4.7 | 4.4 | 4.5 | 4.4 | 4.5 | 4.3 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.3 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.5 | 4.5 | 4.4 | 4.5 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 | 4.5 | 4.6 | 4.7 | 4.7 |
| AG | MAPQ >= 30 | 8.8 | 7.7 | 7.3 | 7.6 | 7.6 | 7.4 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 |
| AG | MAPQ >= 20 | 9.0 | 7.6 | 7.2 | 7.5 | 7.5 | 7.3 | 7.0 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.2 | 7.3 | 7.3 | 7.2 | 7.4 | 7.2 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.5 | 7.4 | 7.3 | 7.5 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 |
| AG | MAPQ >= 10 | 8.8 | 7.5 | 7.0 | 7.4 | 7.4 | 7.1 | 6.9 | 7.0 | 7.1 | 7.2 | 7.2 | 7.1 | 7.0 | 7.1 | 7.1 | 7.0 | 7.1 | 7.3 | 7.2 | 7.2 | 7.2 | 7.1 | 7.5 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.2 | 7.4 | 7.2 | 7.1 | 7.3 | 7.2 | 7.1 | 7.2 | 7.3 | 7.2 | 7.3 | 7.1 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.1 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.3 | 7.4 | 7.4 | 7.2 | 7.3 | 7.5 | 7.3 | 7.3 |
| AG | MAPQ >= 3 | 8.4 | 7.2 | 6.7 | 7.1 | 7.1 | 7.0 | 6.9 | 6.9 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 7.2 | 7.0 | 7.2 | 7.4 | 7.1 | 7.1 | 7.4 | 7.1 | 7.5 | 7.3 | 7.1 | 7.0 | 7.0 | 7.0 | 7.3 | 7.3 | 7.1 | 7.2 | 7.3 | 7.1 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.6 | 6.9 | 7.1 | 7.0 | 7.0 | 7.1 | 7.3 | 7.3 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 6.9 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.2 | 7.2 | 7.1 | 6.9 |
| AG | MAPQ < 3 | 8.6 | 7.4 | 7.0 | 7.3 | 7.3 | 7.1 | 6.8 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 |
| AG | Unmapped | 7.8 | 6.6 | 6.6 | 6.4 | 6.7 | 6.3 | 6.3 | 12.3 | 6.1 | 12.3 | 6.3 | 6.1 | 6.2 | 6.1 | 6.3 | 6.1 | 6.3 | 12.3 | 6.2 | 6.1 | 12.4 | 6.0 | 6.3 | 6.1 | 6.3 | 6.2 | 6.3 | 6.3 | 6.5 | 6.3 | 12.5 | 6.2 | 6.4 | 6.2 | 6.3 | 6.2 | 6.3 | 6.1 | 6.5 | 6.1 | 6.3 | 6.1 | 6.2 | 6.0 | 6.2 | 6.0 | 6.2 | 6.0 | 6.2 | 6.2 | 6.4 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.4 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.5 | 6.5 |
| AT | MAPQ >= 30 | 8.8 | 7.5 | 7.9 | 7.4 | 7.5 | 7.5 | 7.5 | 7.4 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 6.8 | 6.9 | 6.9 | 6.8 | 6.9 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 |
| AT | MAPQ >= 20 | 8.1 | 6.9 | 7.2 | 6.8 | 6.8 | 6.9 | 6.9 | 6.7 | 6.4 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.0 | 6.0 | 6.1 | 6.1 | 6.2 | 6.2 | 6.1 |
| AT | MAPQ >= 10 | 7.9 | 6.9 | 7.1 | 6.7 | 6.7 | 6.8 | 6.9 | 6.7 | 6.3 | 6.4 | 6.6 | 6.6 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.2 | 6.4 | 6.2 | 6.2 | 6.3 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 |
| AT | MAPQ >= 3 | 8.5 | 7.3 | 7.8 | 7.2 | 7.3 | 7.1 | 7.4 | 7.0 | 6.7 | 6.9 | 7.0 | 7.0 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.5 | 6.7 | 6.8 | 6.6 | 6.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.5 | 6.6 | 6.5 | 6.6 | 6.5 | 6.8 | 6.8 | 6.9 | 6.7 | 6.8 | 6.8 | 6.9 | 6.9 | 7.0 | 6.8 | 6.9 | 6.7 | 6.5 | 6.6 | 6.7 | 6.6 | 6.6 | 6.8 | 6.8 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.6 | 6.7 | 6.8 | 6.7 | 6.5 | 6.6 | 6.8 | 6.8 | 6.7 | 6.7 | 6.7 | 6.6 | 6.8 | 6.7 | 6.6 | 6.7 | 6.8 | 6.8 | 6.9 |
| AT | MAPQ < 3 | 8.5 | 7.3 | 7.6 | 7.1 | 7.2 | 7.3 | 7.4 | 7.1 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.8 | 6.9 | 6.8 | 6.8 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.6 | 6.8 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.6 | 6.7 | 6.7 |
| AT | Unmapped | 8.4 | 13.7 | 7.4 | 6.8 | 6.7 | 7.1 | 7.1 | 6.9 | 6.4 | 6.4 | 6.7 | 6.6 | 6.5 | 6.3 | 6.1 | 6.4 | 6.4 | 6.2 | 6.1 | 5.9 | 6.2 | 6.3 | 6.1 | 5.9 | 12.0 | 6.1 | 6.1 | 6.0 | 5.8 | 5.8 | 6.1 | 6.1 | 6.0 | 5.8 | 5.7 | 5.9 | 6.0 | 5.9 | 5.6 | 5.6 | 11.8 | 5.9 | 11.9 | 5.7 | 5.6 | 5.8 | 5.8 | 5.6 | 5.5 | 11.6 | 5.9 | 5.8 | 5.8 | 5.5 | 5.5 | 5.8 | 5.9 | 5.8 | 5.6 | 5.5 | 5.9 | 5.8 | 5.9 | 5.6 | 5.6 | 5.9 | 5.9 | 5.9 | 5.7 | 5.7 | 6.0 | 6.1 | 6.1 | 6.0 |
| CA | MAPQ >= 30 | 8.3 | 6.5 | 7.2 | 7.4 | 7.1 | 7.3 | 7.0 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 |
| CA | MAPQ >= 20 | 8.3 | 6.5 | 7.3 | 7.5 | 7.2 | 7.5 | 7.1 | 7.6 | 7.7 | 7.7 | 7.5 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.6 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.7 | 7.6 | 7.8 | 7.7 | 7.6 | 7.7 | 7.8 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 |
| CA | MAPQ >= 10 | 8.3 | 6.5 | 7.3 | 7.6 | 7.2 | 7.5 | 7.1 | 7.7 | 7.7 | 7.8 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.6 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.9 | 7.7 | 7.7 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 8.0 | 7.9 | 7.7 | 7.9 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 7.6 | 7.7 | 7.8 | 7.7 | 8.0 | 7.7 | 7.8 | 7.8 | 7.9 | 7.7 | 7.8 | 7.7 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.9 | 7.8 | 7.9 | 7.7 | 7.8 | 7.6 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 |
| CA | MAPQ >= 3 | 8.4 | 6.6 | 7.3 | 7.6 | 7.3 | 7.6 | 7.1 | 7.8 | 7.9 | 7.8 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.4 | 7.5 | 7.8 | 7.6 | 7.7 | 7.6 | 7.8 | 7.5 | 7.5 | 7.7 | 7.8 | 7.8 | 7.8 | 8.0 | 8.0 | 7.9 | 7.6 | 7.8 | 7.8 | 8.0 | 7.7 | 7.6 | 7.7 | 7.5 | 7.3 | 7.4 | 7.5 | 7.7 | 7.5 | 7.6 | 7.8 | 7.7 | 7.5 | 7.5 | 7.5 | 7.6 | 7.7 | 7.4 | 7.5 | 7.6 | 7.4 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.3 | 7.3 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 |
| CA | MAPQ < 3 | 8.4 | 6.6 | 7.3 | 7.6 | 7.2 | 7.6 | 7.1 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.6 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.8 | 7.9 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.6 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 |
| CA | Unmapped | 7.6 | 6.0 | 6.4 | 6.7 | 6.7 | 6.9 | 6.4 | 6.6 | 6.7 | 6.9 | 6.6 | 6.6 | 6.3 | 6.5 | 6.6 | 6.6 | 12.5 | 6.3 | 6.4 | 12.8 | 6.5 | 6.4 | 6.2 | 6.4 | 6.4 | 6.4 | 6.3 | 6.2 | 6.3 | 6.5 | 6.4 | 6.3 | 6.1 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 12.0 | 6.4 | 6.2 | 6.2 | 6.0 | 6.2 | 6.4 | 6.3 | 6.1 | 6.1 | 6.3 | 6.5 | 6.4 | 6.3 | 6.1 | 6.3 | 6.3 | 6.3 | 6.2 | 6.1 | 6.2 | 6.5 | 6.3 | 6.3 | 6.2 | 6.3 | 6.5 | 6.4 | 6.3 | 6.2 | 6.3 | 6.4 | 6.3 | 6.2 | 6.3 | 6.4 |
| CC | MAPQ >= 30 | 5.3 | 4.9 | 5.0 | 4.8 | 5.1 | 5.3 | 5.4 | 5.6 | 5.4 | 5.4 | 5.6 | 5.6 | 5.7 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 |
| CC | MAPQ >= 20 | 5.7 | 5.3 | 5.5 | 5.3 | 5.6 | 5.8 | 6.0 | 6.1 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.4 | 6.3 | 6.4 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.5 | 6.4 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 |
| CC | MAPQ >= 10 | 5.8 | 5.3 | 5.4 | 5.2 | 5.5 | 5.8 | 5.9 | 6.1 | 6.0 | 6.1 | 6.0 | 5.9 | 6.0 | 6.4 | 6.3 | 6.4 | 6.6 | 6.7 | 6.7 | 6.6 | 6.6 | 6.7 | 6.7 | 6.4 | 6.6 | 6.6 | 6.8 | 6.8 | 6.6 | 6.7 | 6.7 | 6.5 | 6.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.8 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.8 | 6.9 | 6.7 | 6.8 | 6.9 | 6.9 | 6.9 | 7.0 | 7.1 | 7.0 | 6.9 | 6.9 | 7.0 | 7.1 | 7.1 | 7.2 |
| CC | MAPQ >= 3 | 5.5 | 5.0 | 5.2 | 5.0 | 5.3 | 5.4 | 5.6 | 5.8 | 5.8 | 5.9 | 5.8 | 5.6 | 5.7 | 6.0 | 5.9 | 6.0 | 6.2 | 6.3 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 | 5.9 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.0 | 6.0 | 6.0 | 6.2 | 6.3 | 6.2 | 6.2 | 6.1 | 6.2 | 6.1 | 6.4 | 6.4 | 6.4 | 6.6 | 6.7 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.5 | 6.6 | 6.7 | 6.9 |
| CC | MAPQ < 3 | 5.6 | 5.2 | 5.3 | 5.1 | 5.5 | 5.6 | 5.7 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.2 | 6.1 | 6.1 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 |
| CC | Unmapped | 4.9 | 4.6 | 4.8 | 4.9 | 5.0 | 5.0 | 4.9 | 5.1 | 5.2 | 5.1 | 5.0 | 4.9 | 5.0 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.4 | 5.3 | 5.2 | 5.1 | 5.2 | 5.4 | 5.3 | 5.2 | 5.2 | 11.4 | 5.5 | 5.4 | 5.4 | 5.3 | 5.5 | 11.7 | 5.6 | 5.6 | 5.6 | 11.7 | 6.1 | 6.0 | 5.9 | 5.9 | 5.9 | 6.2 | 6.2 | 6.2 | 6.3 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 12.6 | 6.8 | 6.6 | 6.6 | 6.5 | 6.6 | 6.8 | 6.8 | 6.6 | 6.6 | 6.7 | 6.8 | 6.7 | 6.6 | 6.5 | 6.6 | 6.8 | 6.7 | 6.5 | 6.5 | 6.6 | 6.8 |
| CG | MAPQ >= 30 | 0.9 | 0.7 | 0.9 | 1.0 | 1.0 | 1.1 | 1.0 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.2 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.2 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.2 | 1.1 | 1.2 | 1.2 | 1.1 | 1.2 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.2 | 1.2 | 1.1 | 1.1 | 1.2 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.2 |
| CG | MAPQ >= 20 | 1.5 | 1.1 | 1.4 | 1.6 | 1.6 | 1.8 | 1.6 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.7 | 1.8 | 1.8 | 1.7 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.9 | 1.8 | 1.9 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 |
| CG | MAPQ >= 10 | 1.6 | 1.2 | 1.5 | 1.7 | 1.7 | 1.9 | 1.7 | 2.0 | 1.9 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.8 | 1.9 | 1.9 | 1.9 | 1.9 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.9 | 1.9 | 1.8 | 1.9 | 1.9 | 1.8 | 1.9 | 1.8 | 1.9 | 1.9 | 1.9 | 2.0 | 1.8 | 1.9 | 2.0 | 1.9 | 2.0 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.8 | 1.9 | 1.9 | 1.9 | 1.8 | 1.9 | 1.8 | 1.9 | 1.9 | 1.8 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.8 | 1.8 |
| CG | MAPQ >= 3 | 1.3 | 1.0 | 1.3 | 1.5 | 1.5 | 1.6 | 1.5 | 1.7 | 1.5 | 1.4 | 1.5 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.7 | 1.8 | 1.8 | 1.8 | 1.7 | 1.7 | 1.6 | 1.6 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.6 | 1.5 | 1.7 | 1.6 | 1.6 | 1.7 | 1.6 | 1.8 | 1.5 | 1.6 | 1.7 | 1.7 | 1.8 | 1.7 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.6 | 1.6 | 1.6 | 1.6 | 1.5 | 1.6 | 1.7 | 1.7 | 1.7 | 1.6 | 1.6 | 1.5 | 1.6 |
| CG | MAPQ < 3 | 1.5 | 1.1 | 1.4 | 1.6 | 1.6 | 1.7 | 1.5 | 1.8 | 1.7 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.8 | 1.8 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 |
| CG | Unmapped | 1.7 | 1.4 | 1.7 | 8.1 | 2.0 | 2.1 | 1.8 | 2.1 | 2.1 | 2.1 | 2.0 | 8.2 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.1 | 2.2 | 2.1 | 2.1 | 2.1 | 2.1 | 2.2 | 2.1 | 2.2 | 8.4 | 2.3 | 2.3 | 2.2 | 2.2 | 2.3 | 8.3 | 2.3 | 2.2 | 2.2 | 2.3 | 2.4 | 2.3 | 2.3 | 2.3 | 2.3 | 2.4 | 2.3 | 8.3 | 2.3 | 2.4 | 2.4 | 2.4 | 2.4 | 2.5 | 8.5 | 2.5 | 2.4 | 2.4 | 2.4 | 2.5 | 2.5 | 2.5 | 2.5 | 2.5 | 2.5 | 2.6 | 2.5 | 2.5 | 2.6 | 2.6 | 2.5 | 2.5 | 2.5 | 2.6 | 2.7 |
| CT | MAPQ >= 30 | 8.0 | 6.9 | 7.1 | 7.0 | 6.7 | 7.2 | 7.2 | 7.4 | 7.2 | 7.2 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 |
| CT | MAPQ >= 20 | 7.9 | 6.9 | 7.1 | 7.1 | 6.7 | 7.1 | 7.1 | 7.4 | 7.1 | 7.2 | 7.2 | 7.5 | 7.3 | 7.3 | 7.5 | 7.4 | 7.3 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.3 | 7.2 | 7.3 | 7.2 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.5 | 7.3 | 7.5 | 7.3 | 7.3 | 7.5 | 7.4 | 7.3 | 7.5 | 7.5 | 7.4 | 7.5 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 |
| CT | MAPQ >= 10 | 7.9 | 6.9 | 7.0 | 7.0 | 6.6 | 7.1 | 7.1 | 7.4 | 7.0 | 7.1 | 7.1 | 7.5 | 7.4 | 7.3 | 7.6 | 7.4 | 7.3 | 7.5 | 7.4 | 7.3 | 7.4 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.1 | 7.1 | 7.2 | 7.2 | 7.5 | 7.2 | 7.4 | 7.2 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.5 | 7.4 | 7.5 | 7.2 | 7.2 | 7.6 | 7.3 | 7.3 | 7.6 | 7.5 | 7.6 | 7.6 | 7.3 | 7.4 | 7.4 | 7.6 | 7.6 | 7.4 | 7.5 | 7.6 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 |
| CT | MAPQ >= 3 | 7.7 | 6.7 | 6.9 | 6.8 | 6.6 | 7.0 | 6.8 | 6.9 | 6.6 | 6.9 | 6.9 | 7.2 | 7.0 | 7.1 | 7.3 | 7.0 | 7.0 | 7.3 | 7.1 | 7.1 | 7.2 | 7.0 | 7.1 | 7.0 | 7.2 | 7.1 | 7.1 | 7.1 | 6.9 | 6.9 | 6.9 | 6.7 | 7.0 | 6.8 | 7.0 | 6.9 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.5 | 7.3 | 7.4 | 7.2 | 7.1 | 7.2 | 7.1 | 7.0 | 7.4 | 7.3 | 7.4 | 7.7 | 7.1 | 7.3 | 7.2 | 7.3 | 7.3 | 7.5 | 7.4 | 7.5 | 7.4 | 7.3 | 7.4 | 7.4 | 7.3 | 7.2 | 7.2 | 7.1 | 6.9 | 6.8 | 6.9 | 6.9 | 6.9 |
| CT | MAPQ < 3 | 7.7 | 6.7 | 6.9 | 6.8 | 6.6 | 7.0 | 6.9 | 7.2 | 6.9 | 7.0 | 7.0 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.1 | 7.2 | 7.1 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 |
| CT | Unmapped | 7.3 | 6.3 | 6.5 | 6.4 | 6.2 | 6.5 | 6.5 | 6.6 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.2 | 6.0 | 6.1 | 6.0 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.8 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.8 | 5.9 | 5.9 | 11.9 | 5.7 | 5.8 | 5.7 | 5.8 | 5.8 | 5.9 | 5.8 | 5.9 | 5.7 | 5.9 | 5.8 | 11.9 | 5.8 | 5.8 | 11.8 | 5.8 | 5.8 | 11.9 | 5.8 | 5.7 | 5.7 | 5.8 | 5.7 | 5.8 | 5.6 | 5.7 | 5.7 | 5.8 | 5.8 |
| GA | MAPQ >= 30 | 6.0 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.2 | 5.8 | 6.1 | 6.1 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| GA | MAPQ >= 20 | 6.3 | 6.7 | 6.5 | 6.6 | 6.7 | 6.6 | 6.4 | 6.0 | 6.3 | 6.4 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 | 6.3 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 |
| GA | MAPQ >= 10 | 6.2 | 6.6 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 5.9 | 6.3 | 6.4 | 6.3 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.4 | 6.4 | 6.4 | 6.4 | 6.2 | 6.5 | 6.4 | 6.5 | 6.3 | 6.3 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.6 | 6.6 | 6.3 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.7 | 6.5 | 6.3 | 6.5 | 6.4 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.3 | 6.5 | 6.6 | 6.7 | 6.7 | 6.4 |
| GA | MAPQ >= 3 | 5.9 | 6.2 | 6.0 | 6.1 | 6.0 | 6.2 | 6.1 | 5.8 | 6.0 | 6.0 | 6.1 | 5.9 | 5.9 | 6.0 | 6.0 | 6.2 | 6.2 | 6.1 | 6.3 | 6.3 | 6.2 | 6.5 | 6.4 | 6.5 | 6.4 | 6.2 | 6.4 | 6.2 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.5 | 6.3 | 6.4 | 6.4 | 6.2 | 6.3 | 6.2 | 6.3 | 6.4 | 6.4 | 6.4 | 6.6 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.6 | 6.4 | 6.6 | 6.4 | 6.3 | 6.3 | 6.4 | 6.2 | 6.4 | 6.4 | 6.4 | 6.2 | 6.3 | 6.1 | 6.2 | 6.3 | 6.4 | 6.6 | 6.5 | 6.2 |
| GA | MAPQ < 3 | 6.4 | 6.8 | 6.5 | 6.6 | 6.7 | 6.7 | 6.6 | 6.0 | 6.3 | 6.5 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.6 | 6.6 | 6.4 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.4 | 6.5 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 |
| GA | Unmapped | 12.7 | 6.7 | 6.2 | 6.6 | 6.6 | 12.9 | 6.3 | 5.9 | 12.3 | 6.5 | 6.2 | 6.4 | 5.9 | 6.3 | 6.2 | 6.4 | 6.2 | 6.1 | 6.0 | 6.3 | 6.2 | 6.3 | 12.1 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 12.8 | 6.4 | 12.6 | 6.1 | 6.4 | 6.3 | 6.7 | 6.3 | 6.1 | 6.1 | 6.5 | 6.3 | 6.5 | 6.0 | 6.2 | 6.2 | 6.3 | 6.0 | 6.0 | 6.1 | 6.3 | 6.2 | 6.3 | 5.9 | 6.2 | 6.3 | 6.3 | 6.2 | 6.1 | 6.2 | 6.4 | 6.3 | 6.4 | 6.1 | 6.3 | 6.5 | 12.2 | 6.5 | 6.3 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.6 |
| GC | MAPQ >= 30 | 4.1 | 4.2 | 4.3 | 4.3 | 4.6 | 4.4 | 4.6 | 4.4 | 4.5 | 4.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 |
| GC | MAPQ >= 20 | 4.5 | 4.6 | 4.8 | 4.7 | 5.1 | 4.9 | 5.2 | 4.9 | 4.9 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.4 | 5.5 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.2 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.2 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.3 | 5.2 | 5.2 | 5.1 |
| GC | MAPQ >= 10 | 4.7 | 4.7 | 4.9 | 4.8 | 5.1 | 4.9 | 5.3 | 4.9 | 5.0 | 5.1 | 5.2 | 5.2 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.5 | 5.5 | 5.3 | 5.4 | 5.2 | 5.4 | 5.3 | 5.4 | 5.4 | 5.5 | 5.7 | 5.7 | 5.3 | 5.5 | 5.3 | 5.4 | 5.4 | 5.5 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.6 | 5.4 | 5.5 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.5 | 5.2 | 5.3 | 5.4 | 5.4 | 5.4 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.5 | 5.4 | 5.5 | 5.5 | 5.4 | 5.3 | 5.3 |
| GC | MAPQ >= 3 | 4.5 | 4.5 | 4.7 | 4.4 | 4.9 | 4.7 | 5.1 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 4.8 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 4.8 | 4.9 | 4.8 | 4.7 | 4.8 | 5.0 | 5.1 | 4.9 | 4.7 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 5.1 | 4.9 | 5.1 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 5.1 | 5.1 | 5.0 | 4.9 | 5.1 | 5.1 | 5.2 | 5.3 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.0 |
| GC | MAPQ < 3 | 4.4 | 4.3 | 4.5 | 4.5 | 4.8 | 4.6 | 4.9 | 4.6 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 |
| GC | Unmapped | 3.4 | 3.4 | 3.6 | 3.7 | 4.0 | 3.8 | 4.0 | 3.8 | 3.9 | 3.9 | 10.1 | 3.9 | 3.9 | 3.9 | 3.9 | 4.0 | 3.9 | 4.0 | 10.2 | 4.0 | 4.0 | 4.0 | 3.9 | 3.9 | 3.9 | 3.9 | 10.0 | 3.9 | 3.9 | 4.0 | 4.0 | 3.9 | 3.9 | 3.9 | 3.9 | 4.0 | 9.8 | 3.9 | 4.0 | 3.9 | 4.0 | 3.9 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.1 | 4.1 | 4.1 | 10.2 | 4.2 | 4.1 | 4.2 | 4.1 | 4.1 | 4.1 | 4.2 | 4.2 | 4.2 | 10.2 | 4.2 | 4.2 | 4.2 | 4.3 | 4.2 | 4.2 | 4.2 | 4.2 | 4.1 | 4.1 | 4.2 | 4.2 |
| GG | MAPQ >= 30 | 5.8 | 5.7 | 5.8 | 5.5 | 5.6 | 5.7 | 5.5 | 5.2 | 5.4 | 5.5 | 5.5 | 5.5 | 5.5 | 5.6 | 5.7 | 5.7 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 5.9 | 5.9 | 5.9 | 6.0 | 5.9 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 |
| GG | MAPQ >= 20 | 6.7 | 6.7 | 6.6 | 6.3 | 6.4 | 6.6 | 6.2 | 5.9 | 6.3 | 6.4 | 6.3 | 6.2 | 6.2 | 6.3 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.7 | 6.7 | 6.6 | 6.6 | 6.8 | 6.7 | 6.8 | 6.8 | 6.8 | 6.9 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.0 | 6.9 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 6.9 | 7.0 | 6.9 | 6.9 | 6.9 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 |
| GG | MAPQ >= 10 | 7.1 | 6.9 | 6.8 | 6.3 | 6.7 | 6.9 | 6.3 | 6.0 | 6.5 | 6.6 | 6.5 | 6.3 | 6.2 | 6.3 | 6.6 | 6.5 | 6.5 | 6.7 | 6.9 | 6.8 | 6.9 | 6.6 | 6.6 | 6.9 | 6.9 | 7.0 | 6.8 | 6.9 | 7.0 | 7.1 | 7.2 | 6.9 | 6.9 | 7.1 | 6.8 | 6.8 | 7.0 | 6.9 | 6.9 | 6.9 | 7.0 | 6.9 | 6.8 | 6.7 | 6.8 | 6.6 | 6.8 | 6.8 | 6.7 | 6.6 | 6.8 | 6.6 | 6.6 | 6.6 | 6.7 | 6.6 | 6.5 | 6.5 | 6.6 | 6.7 | 6.6 | 6.5 | 6.3 | 6.4 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 |
| GG | MAPQ >= 3 | 6.8 | 6.4 | 6.2 | 5.7 | 6.0 | 6.3 | 5.8 | 5.5 | 5.8 | 6.0 | 5.7 | 5.6 | 5.8 | 5.9 | 6.0 | 6.1 | 6.2 | 6.4 | 6.6 | 6.4 | 6.6 | 6.4 | 6.5 | 6.8 | 6.7 | 6.8 | 6.6 | 6.7 | 6.9 | 7.0 | 6.9 | 6.6 | 6.7 | 6.6 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.4 | 6.2 | 6.0 | 6.1 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| GG | MAPQ < 3 | 6.5 | 6.2 | 6.2 | 5.8 | 6.1 | 6.2 | 5.7 | 5.5 | 5.9 | 5.9 | 5.9 | 5.8 | 5.9 | 6.0 | 6.1 | 6.1 | 6.1 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 |
| GG | Unmapped | 5.5 | 5.2 | 5.3 | 5.2 | 11.5 | 5.3 | 5.0 | 4.9 | 5.2 | 5.3 | 5.2 | 5.1 | 11.4 | 5.4 | 5.4 | 5.5 | 5.3 | 5.5 | 5.7 | 5.6 | 5.7 | 11.7 | 5.7 | 6.0 | 6.0 | 6.0 | 6.0 | 6.2 | 6.4 | 6.6 | 6.6 | 6.6 | 6.8 | 7.0 | 7.0 | 12.9 | 6.9 | 7.0 | 7.2 | 7.3 | 7.3 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.0 | 7.2 | 7.1 | 7.2 | 7.3 | 7.3 | 7.4 | 7.7 | 7.9 | 7.9 | 7.9 | 8.2 | 8.4 | 8.5 | 8.6 | 8.5 | 8.7 | 8.9 | 9.0 | 9.2 | 8.8 | 9.0 | 9.1 | 9.0 | 9.0 | 8.8 | 8.9 | 8.9 |
| GT | MAPQ >= 30 | 5.6 | 4.9 | 4.9 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 |
| GT | MAPQ >= 20 | 5.8 | 5.1 | 5.1 | 5.3 | 5.3 | 5.2 | 5.4 | 5.3 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.3 | 5.2 | 5.1 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.0 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 |
| GT | MAPQ >= 10 | 5.9 | 5.3 | 5.2 | 5.5 | 5.3 | 5.3 | 5.5 | 5.4 | 5.3 | 5.4 | 5.3 | 5.4 | 5.2 | 5.3 | 5.2 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.3 | 5.4 | 5.2 | 5.2 | 5.4 | 5.3 | 5.3 | 5.2 | 5.1 | 5.3 | 5.3 | 5.2 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.3 | 5.2 | 5.2 | 5.2 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 4.9 | 4.8 | 4.9 | 4.8 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 4.8 | 4.9 | 5.1 | 5.1 | 4.9 | 4.8 | 4.9 | 4.9 |
| GT | MAPQ >= 3 | 6.0 | 5.3 | 5.2 | 5.3 | 5.2 | 5.3 | 5.5 | 5.4 | 5.2 | 5.3 | 5.1 | 5.2 | 5.2 | 5.3 | 5.1 | 5.3 | 5.3 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.3 | 5.3 | 5.3 | 5.2 | 5.0 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.4 | 5.2 | 5.4 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.0 | 5.2 | 5.0 | 4.9 | 4.9 | 4.8 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 4.9 | 5.1 | 5.1 | 5.1 | 4.8 | 4.9 | 4.9 |
| GT | MAPQ < 3 | 5.8 | 5.0 | 5.0 | 5.2 | 5.2 | 5.2 | 5.4 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 |
| GT | Unmapped | 5.6 | 4.6 | 4.6 | 4.8 | 4.7 | 4.7 | 4.8 | 4.7 | 4.6 | 4.7 | 4.7 | 4.6 | 4.6 | 10.8 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.7 | 4.6 | 4.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.7 | 4.6 | 4.8 | 4.7 | 4.6 | 4.8 | 4.7 | 4.6 | 4.6 | 4.7 | 10.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.6 | 4.5 | 10.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.5 | 4.6 | 4.5 | 4.4 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 |
| TA | MAPQ >= 30 | 5.2 | 6.6 | 6.2 | 6.6 | 6.3 | 6.0 | 6.0 | 5.9 | 6.0 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.6 | 5.6 | 5.7 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.6 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.4 | 5.5 |
| TA | MAPQ >= 20 | 4.4 | 5.5 | 5.2 | 5.5 | 5.3 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.7 | 4.8 | 4.7 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.4 | 4.5 | 4.5 | 4.4 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.4 | 4.5 | 4.4 | 4.5 | 4.5 | 4.5 | 4.4 | 4.5 |
| TA | MAPQ >= 10 | 4.2 | 5.3 | 5.1 | 5.4 | 5.1 | 4.8 | 4.7 | 4.7 | 4.8 | 4.7 | 4.7 | 4.6 | 4.7 | 4.7 | 4.8 | 4.7 | 4.6 | 4.6 | 4.5 | 4.6 | 4.5 | 4.7 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 | 4.2 | 4.4 | 4.4 | 4.4 | 4.4 | 4.3 | 4.4 | 4.4 | 4.3 | 4.4 | 4.4 | 4.3 | 4.3 | 4.4 | 4.3 | 4.5 | 4.3 | 4.3 | 4.4 | 4.4 | 4.4 | 4.5 | 4.4 | 4.4 | 4.4 | 4.3 | 4.3 | 4.3 | 4.4 | 4.4 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.5 | 4.4 | 4.4 | 4.5 | 4.5 | 4.4 | 4.3 | 4.4 |
| TA | MAPQ >= 3 | 4.7 | 5.9 | 5.7 | 6.0 | 5.7 | 5.6 | 5.3 | 5.5 | 5.3 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.2 | 5.4 | 5.1 | 5.1 | 5.0 | 5.2 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.7 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 5.0 | 4.8 | 4.7 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 5.0 | 4.9 | 4.7 | 4.8 | 4.9 | 4.8 | 5.1 | 4.9 | 4.8 | 4.8 | 4.7 | 4.9 | 4.9 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 4.9 | 4.9 |
| TA | MAPQ < 3 | 4.4 | 5.6 | 5.3 | 5.7 | 5.4 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.6 | 4.7 | 4.7 | 4.8 | 4.7 | 4.7 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 |
| TA | Unmapped | 4.1 | 5.4 | 5.1 | 5.3 | 5.1 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.3 | 4.2 | 4.3 | 4.2 | 4.2 | 4.2 | 4.1 | 4.1 | 4.2 | 4.2 | 4.1 | 4.1 | 4.2 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 4.0 | 3.9 | 3.9 | 3.9 | 3.9 | 3.9 | 3.9 | 9.7 | 3.8 | 3.8 | 3.9 | 3.9 | 3.8 | 3.8 | 9.8 | 3.9 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.9 | 3.9 | 3.9 | 3.9 | 3.9 | 3.9 | 3.8 | 3.8 | 3.8 | 3.9 | 3.9 |
| TC | MAPQ >= 30 | 4.2 | 6.1 | 5.9 | 5.8 | 6.1 | 5.9 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| TC | MAPQ >= 20 | 4.3 | 6.4 | 6.3 | 6.2 | 6.4 | 6.0 | 6.7 | 6.7 | 6.7 | 6.4 | 6.6 | 6.5 | 6.7 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.3 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.6 | 6.5 | 6.5 | 6.3 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 |
| TC | MAPQ >= 10 | 4.2 | 6.4 | 6.3 | 6.3 | 6.5 | 6.0 | 6.8 | 6.7 | 6.8 | 6.5 | 6.6 | 6.6 | 6.8 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.6 | 6.6 | 6.6 | 6.4 | 6.4 | 6.5 | 6.6 | 6.5 | 6.6 | 6.5 | 6.5 | 6.3 | 6.2 | 6.4 | 6.3 | 6.6 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.7 | 6.6 | 6.6 | 6.5 | 6.7 | 6.7 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.5 | 6.7 | 6.7 | 6.7 | 6.8 | 6.4 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 |
| TC | MAPQ >= 3 | 4.2 | 6.4 | 6.3 | 6.3 | 6.4 | 5.9 | 6.5 | 6.3 | 6.4 | 6.1 | 6.4 | 6.4 | 6.6 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.2 | 6.2 | 6.4 | 6.4 | 6.4 | 6.7 | 6.5 | 6.5 | 6.2 | 6.0 | 6.2 | 6.2 | 6.5 | 6.4 | 6.6 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.8 | 6.6 | 6.5 | 6.4 | 6.7 | 6.5 | 6.5 | 6.6 | 6.6 | 6.7 | 6.6 | 6.6 | 6.4 | 6.6 | 6.4 | 6.5 | 6.6 | 6.4 | 6.3 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.1 | 6.0 | 6.0 | 5.9 | 5.8 | 5.9 | 6.0 | 5.9 |
| TC | MAPQ < 3 | 4.3 | 6.5 | 6.3 | 6.3 | 6.5 | 6.1 | 6.7 | 6.7 | 6.7 | 6.5 | 6.6 | 6.5 | 6.7 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.4 | 6.5 | 6.5 | 6.6 | 6.5 | 6.6 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.7 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 |
| TC | Unmapped | 4.4 | 6.6 | 12.8 | 6.5 | 6.5 | 6.1 | 6.5 | 6.8 | 6.6 | 6.4 | 6.2 | 6.3 | 6.4 | 6.4 | 6.1 | 12.1 | 6.0 | 6.3 | 6.2 | 6.1 | 5.8 | 5.9 | 6.1 | 6.1 | 5.9 | 5.8 | 5.9 | 6.1 | 6.0 | 5.8 | 5.7 | 5.9 | 6.0 | 6.1 | 6.0 | 5.9 | 5.9 | 6.2 | 6.1 | 6.0 | 5.8 | 6.0 | 6.2 | 12.3 | 6.1 | 11.9 | 6.0 | 6.2 | 6.1 | 6.0 | 5.9 | 6.0 | 6.1 | 6.1 | 5.9 | 11.7 | 5.8 | 6.2 | 12.1 | 5.9 | 5.7 | 5.9 | 6.1 | 6.1 | 5.9 | 5.8 | 5.9 | 6.1 | 6.0 | 5.9 | 5.8 | 6.0 | 6.2 | 6.3 |
| TG | MAPQ >= 30 | 5.7 | 7.3 | 7.3 | 7.7 | 7.5 | 7.4 | 7.1 | 7.5 | 7.6 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.7 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 |
| TG | MAPQ >= 20 | 5.9 | 7.6 | 7.6 | 8.0 | 7.8 | 7.6 | 7.3 | 7.9 | 8.0 | 7.6 | 7.6 | 7.6 | 7.8 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.9 | 7.8 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.4 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.4 | 7.4 | 7.5 |
| TG | MAPQ >= 10 | 6.0 | 7.7 | 7.8 | 8.1 | 7.9 | 7.7 | 7.4 | 8.1 | 8.1 | 7.6 | 7.6 | 7.6 | 7.9 | 8.0 | 7.7 | 8.0 | 8.0 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 8.0 | 7.8 | 7.9 | 8.0 | 7.9 | 7.9 | 7.8 | 7.8 | 7.8 | 7.7 | 7.5 | 7.7 | 7.7 | 7.7 | 8.0 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.5 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.6 | 7.6 | 7.8 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 |
| TG | MAPQ >= 3 | 5.9 | 7.4 | 7.4 | 7.9 | 7.8 | 7.5 | 7.3 | 7.8 | 7.8 | 7.2 | 7.3 | 7.4 | 7.6 | 7.7 | 7.7 | 7.7 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.8 | 7.5 | 7.7 | 7.7 | 7.6 | 7.7 | 7.8 | 7.7 | 7.8 | 7.6 | 7.5 | 7.7 | 7.7 | 7.7 | 7.8 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 8.0 | 7.8 | 7.9 | 7.8 | 7.7 | 7.7 | 7.6 | 7.4 | 7.6 | 7.5 | 7.7 | 7.9 | 7.7 | 7.8 | 7.5 | 7.6 | 7.4 | 7.6 | 7.6 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.7 | 7.5 | 7.7 |
| TG | MAPQ < 3 | 5.8 | 7.5 | 7.5 | 7.9 | 7.7 | 7.5 | 7.2 | 7.8 | 7.8 | 7.6 | 7.5 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.6 | 7.7 | 7.8 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 |
| TG | Unmapped | 4.8 | 6.6 | 6.7 | 6.9 | 6.6 | 6.3 | 6.2 | 6.7 | 6.9 | 6.6 | 6.4 | 6.4 | 6.6 | 6.6 | 6.6 | 6.4 | 6.5 | 6.6 | 6.5 | 6.6 | 6.4 | 6.4 | 6.6 | 6.6 | 6.5 | 12.6 | 6.6 | 6.6 | 6.7 | 6.5 | 6.4 | 6.5 | 6.6 | 6.5 | 6.5 | 6.3 | 6.4 | 6.5 | 6.5 | 6.5 | 6.4 | 6.3 | 6.4 | 6.5 | 6.4 | 6.2 | 6.2 | 6.4 | 6.4 | 6.4 | 12.3 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.5 | 6.4 | 12.2 | 6.3 | 6.4 | 6.5 | 12.3 | 6.1 | 6.2 | 6.3 | 6.3 | 6.2 | 6.0 | 6.1 | 6.2 | 6.3 |
| TT | MAPQ >= 30 | 7.1 | 9.6 | 9.4 | 9.1 | 8.7 | 8.9 | 9.3 | 9.5 | 9.5 | 9.4 | 9.3 | 9.3 | 9.3 | 9.2 | 9.0 | 8.9 | 8.8 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 |
| TT | MAPQ >= 20 | 6.8 | 9.1 | 8.9 | 8.6 | 8.2 | 8.4 | 8.7 | 8.7 | 8.6 | 8.5 | 8.5 | 8.6 | 8.6 | 8.4 | 8.3 | 8.1 | 8.1 | 7.9 | 7.9 | 7.8 | 7.7 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 8.0 | 7.9 | 7.9 | 7.9 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.0 | 7.9 | 7.8 | 7.7 | 7.8 | 7.8 |
| TT | MAPQ >= 10 | 7.0 | 9.3 | 9.2 | 8.8 | 8.4 | 8.4 | 8.7 | 8.7 | 8.6 | 8.4 | 8.4 | 8.6 | 8.6 | 8.3 | 8.2 | 7.9 | 7.9 | 7.8 | 7.8 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.4 | 7.4 | 7.3 | 7.4 | 7.5 | 7.5 | 7.6 | 7.5 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.2 | 7.1 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.3 | 7.4 | 7.5 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.5 |
| TT | MAPQ >= 3 | 7.4 | 9.9 | 9.8 | 9.4 | 9.0 | 9.0 | 9.3 | 9.4 | 9.3 | 9.2 | 9.2 | 9.2 | 9.2 | 9.0 | 9.0 | 8.7 | 8.6 | 8.6 | 8.6 | 8.3 | 8.4 | 8.3 | 8.2 | 8.4 | 8.3 | 8.5 | 8.6 | 8.4 | 8.2 | 8.0 | 8.0 | 8.1 | 8.2 | 8.3 | 8.5 | 8.3 | 8.1 | 8.2 | 8.2 | 8.1 | 8.2 | 8.3 | 8.2 | 8.3 | 8.0 | 8.0 | 8.0 | 7.9 | 7.8 | 7.8 | 8.0 | 7.9 | 7.9 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.3 | 8.2 | 8.1 | 8.0 | 8.2 | 8.3 | 8.3 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.3 |
| TT | MAPQ < 3 | 7.0 | 9.4 | 9.2 | 8.8 | 8.5 | 8.6 | 9.0 | 9.2 | 9.1 | 8.9 | 8.9 | 8.9 | 8.9 | 8.7 | 8.6 | 8.5 | 8.4 | 8.4 | 8.3 | 8.2 | 8.2 | 8.2 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.2 | 8.1 | 8.0 | 8.1 | 8.0 | 8.1 | 8.1 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.0 | 8.1 | 8.1 | 8.0 | 7.9 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.1 | 8.1 | 8.1 | 8.0 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.0 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 |
| TT | Unmapped | 6.0 | 8.9 | 8.8 | 8.5 | 8.3 | 8.7 | 9.5 | 9.9 | 9.9 | 9.8 | 10.1 | 10.5 | 10.6 | 10.6 | 16.7 | 10.7 | 11.0 | 11.0 | 11.0 | 10.9 | 11.1 | 11.4 | 11.6 | 11.4 | 11.1 | 11.1 | 11.1 | 11.0 | 10.6 | 10.3 | 10.4 | 10.6 | 10.4 | 10.4 | 10.3 | 10.3 | 10.5 | 10.4 | 10.3 | 10.1 | 10.2 | 10.5 | 10.4 | 10.3 | 10.2 | 10.1 | 10.3 | 10.1 | 9.7 | 9.5 | 9.4 | 9.5 | 9.3 | 9.1 | 8.9 | 8.9 | 9.1 | 15.0 | 8.7 | 8.5 | 8.5 | 8.6 | 8.5 | 14.3 | 8.1 | 8.1 | 8.3 | 8.1 | 8.0 | 7.8 | 7.9 | 8.2 | 8.2 | 8.1 |
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG AT CA CT |
AA TT AG AT TG |
AA TT AT AG TG |
AA TT TG AG AT |
AA TT AG AT TG |
AA TT AT AG TG |
AA TT AT CT TG |
TT AA TG AT CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
TT AA TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG AG |
AA TT CA TG AG |
TT AA CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG CA AT CT |
TT AA TG AG CT |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT TG AG CA |
TT AA TG CA AG |
TT AA TG CT CA |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG CA AA CT |
TG CA TT AA CT |
TG TT CA AA CT |
TT TG CA AA CT |
TT TG AA CA CT |
TT CA TG AA CT |
TT TG AA CA AG |
TT TG AA CA AG |
TG TT CA AA AG |
TG TT CA AA AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA AA TT AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG TT AA CA CT |
TG CA TT AA CT |
CA TG TT AA AG |
TG TT AA CA AG |
TG TT AA CA CT |
TG TT CA AA AG |
TG CA TT AA AG |
TG AA TT CA AG |
TG TT CA AA CT |
TG TT CA AA CT |
TG TT AA CA CT |
CA TG TT AA CT |
AA TT CA TG AG |
TT AA TG CA CT |
TT TG CA AA CT |
CA AA TT TG AG |
AA CA TT TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA AG |
AA TT TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG CA CT AT |
TT AA TG AG GG |
TT AA TG CA AT |
TT TG AA CA AG |
TT AA TG AG CA |
TT AA TG CA CT |
TT AA TG CT CA |
TT TG AA CA CT |
TT TG AA CA AG |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA TG CA CT |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG CA CT AA |
TG TT CA AA CT |
TG TT CA AA CT |
TT TG CA CT AA |
TG TT CA AA CT |
TG CA TT AA CT |
TG TT CA CT AA |
TG CA TT AA CT |
TG CA TT AG AA |
CA TG TT AA AG |
TG CA AA TT AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA AA AG TT |
TG CA AA TT AG |
CA TG AA TT AG |
TG CA CT AA AG |
TG CA AA TT AG |
TG CA TT AA CT |
TG CA TT AA AG |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA AG TT |
TG AA CA TT CT |
TG CA AA CT TT |
TG CA CT AA TT |
TG CA AA CT TT |
CA TG AA TT CT |
TG AA CA AG CT |
TG CA AA CT TT |
TG CA AA CT AG |
CA AA TG AG CT |
AA CA CT TG AG |
CA AA TG CT AG |
AA CA TG CT TT |
CA AA TG CT TT |
TG CA AA CT AG |
AA CA TG CT AG |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG CT AG |
AA CA CT TG AG |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG TT CT |
AA TG CA CT TT |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG AG CT |
AA TG CA AG CT |
AA CA TG TT AG |
AA CA TG AG TT |
AA CA TG AG TT |
AA CA TG TT AG |
AA CA TG TT AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT CA AG CT |
TT AA TG AT AG |
TT AA AT TG CA |
TT AA TG CA AT |
TT AA TG CA AT |
TT AA CA TG AT |
TT AA AT TG CA |
TT AA CA TG AT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
TT AA TG CA AG |
TT AA CA TG CT |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
TT AA TG CA CT |
TT AA TG CT CA |
TT AA TG CA CT |
TT AA TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CT TG CA |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA CT TG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CT CA |
AA TT TG CT CA |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA CC |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG AT CA CT |
TT AA TG AG AT |
TT AA AT TG CA |
TT AA TG CA AG |
AA TT TG AG CA |
AA TT CA TG AT |
TT AA AT TG CA |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA CA TG AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
TT AA TG CA CT |
AA TT CA TG AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
GA AA AT AG CA |
AT AA TT GA AG |
TC TT AA AT TG |
CG TT AA TG AT |
GG AA TT CA AT |
GA AA TT AT CA |
AA TT AT CT TC |
AG TT AA AT TC |
GA TT AA TG CA |
AG TT AA CA TG |
GC TT AA AT CA |
CG TT AA CA AT |
GG TT AA TG AT |
GT TT AA TG CA |
TT AA CA TG AG |
TC TT AA CA TG |
CA TT AA TG AT |
AG TT AA TG CA |
TT GC AA TG CA |
CA TT AA TG GA |
AG TT AA CA TG |
GG TT AA TG CA |
GA TT AA TG AG |
AA TT TG CA GA |
AT TT AA TG CA |
TG TT AA CA GA |
TT GC AA TG GA |
CC TT AA TG GA |
CG TT AA TG AG |
GA TT AA GG TG |
AG TT AA GG GA |
GA TT AA GG TG |
AC TT AA GG TG |
CC TT AA GG TG |
CG TT AA GG TG |
GG TT AA GA CA |
TT GC AA GG TG |
CC TT AA GG TG |
CA TT AA GG TG |
AA TT GG TG GA |
AT TT AA GG TG |
TT TA AA GG GA |
AT TT AA GG TG |
TC TT AA GG TG |
CT TT AA GG TG |
TC TT AA GG GA |
CG TT AA GG CC |
GT TT AA GG CC |
TA TT AA GG CC |
AT TT AA GG CC |
TG TT AA GG CC |
GC TT AA GG CC |
CC TT AA GG TG |
CG TT AA GG CC |
GT TT AA GG CC |
TC TT AA GG CC |
CT TT AA GG CC |
TT GG AA CC TG |
TC TT GG AA CC |
CT GG TT AA CC |
TG GG TT AA CC |
GC TT GG AA CC |
CT GG TT AA CC |
TT GG AA CC TG |
TG GG TT AA CC |
GA GG TT AA CC |
AA GG TT CC GA |
AA GG TT CC TG |
AA GG TT CC GA |
AA GG TT CC GA |
AA GG TT CC GA |
AA GG TT CC GA |
AA GG TT CC AG |
AA GG TT CC GA |
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 | Unmapped | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value |
| TGTAATCCCA | 687478 | 0.0e+00 | TTTTTTTTTT | 148491 | 0.0e+00 | GGAGGCTGAG | 51481 | 0.0e+00 | GAGGCTGAGG | 11337 | 0.0e+00 | GGAGGCTGAG | 95181 | 0.0e+00 | TTTTTTTTTT | 2467814 | 0.0e+00 |
| CTGTAATCCC | 666407 | 0.0e+00 | AAAAAAAAAA | 131473 | 0.0e+00 | GAGGCTGAGG | 50904 | 0.0e+00 | GGAGGCTGAG | 11282 | 0.0e+00 | GAGGCTGAGG | 94534 | 0.0e+00 | AAAAAAAAAA | 1224865 | 0.0e+00 |
| CCCAGGCTGG | 533810 | 0.0e+00 | GGAGGCTGAG | 53661 | 0.0e+00 | AGGCTGAGGC | 47946 | 0.0e+00 | CTCCTGACCT | 11112 | 0.0e+00 | AGGCTGAGGC | 87569 | 0.0e+00 | ATTCCATTCC | 383316 | 0.0e+00 |
| CAGGCTGGAG | 488202 | 0.0e+00 | GAGGCTGAGG | 53205 | 0.0e+00 | AAAAAAAAAA | 47172 | 0.0e+00 | AGGCTGAGGC | 10814 | 0.0e+00 | TCCCAGCTAC | 81634 | 0.0e+00 | TTCCATTCCA | 381241 | 0.0e+00 |
| CCAGGCTGGA | 487735 | 0.0e+00 | AGGCTGAGGC | 48376 | 0.0e+00 | GGCTGAGGCA | 45152 | 0.0e+00 | GGCTGAGGCA | 10174 | 0.0e+00 | GGCTGAGGCA | 81486 | 0.0e+00 | CCATTCCATT | 374472 | 0.0e+00 |
| TGGGATTACA | 483641 | 0.0e+00 | TAATCCCAGC | 45565 | 0.0e+00 | GCTGAGGCAG | 44419 | 0.0e+00 | GCTGAGGCAG | 10057 | 0.0e+00 | AGGCAGGAGA | 81408 | 0.0e+00 | TCCATTCCAT | 372498 | 0.0e+00 |
| GGATTACAGG | 476428 | 0.0e+00 | TGTAATCCCA | 43989 | 0.0e+00 | CTCAGCCTCC | 43649 | 0.0e+00 | CTGAGGCAGG | 10000 | 0.0e+00 | CCCAGCTACT | 80604 | 0.0e+00 | CATTCCATTC | 364689 | 0.0e+00 |
| CTGGAGTGCA | 455014 | 0.0e+00 | GGCTGAGGCA | 43739 | 0.0e+00 | TCCCAGCTAC | 43434 | 0.0e+00 | TCCTGACCTC | 9869 | 0.0e+00 | CTCAGCCTCC | 80323 | 0.0e+00 | GGAATGGAAT | 349925 | 0.0e+00 |
| GGCTGGAGTG | 447754 | 0.0e+00 | TCCCAGCTAC | 43631 | 0.0e+00 | CCTCAGCCTC | 43386 | 0.0e+00 | TCCCAGCTAC | 9692 | 0.0e+00 | GCTGAGGCAG | 80075 | 0.0e+00 | TGGAATGGAA | 349350 | 0.0e+00 |
| CACTTTGGGA | 441700 | 0.0e+00 | CTCAGCCTCC | 43383 | 0.0e+00 | CTGAGGCAGG | 43379 | 0.0e+00 | AGGCAGGAGA | 9689 | 0.0e+00 | CCTCAGCCTC | 79910 | 0.0e+00 | AATGGAATGG | 344910 | 0.0e+00 |
| CTTTGGGAGG | 439166 | 0.0e+00 | GTAATCCCAG | 43236 | 0.0e+00 | CCCAGCTACT | 42969 | 0.0e+00 | CCCAGCTACT | 9622 | 0.0e+00 | GGCAGGAGAA | 79887 | 0.0e+00 | ATGGAATGGA | 343838 | 0.0e+00 |
| AATCCCAGCA | 438685 | 0.0e+00 | CCTCAGCCTC | 43216 | 0.0e+00 | GCCTCAGCCT | 40425 | 0.0e+00 | CCTCAGCCTC | 9537 | 0.0e+00 | CTGAGGCAGG | 78681 | 0.0e+00 | GAATGGAATG | 333824 | 0.0e+00 |
| GCTGGAGTGC | 438664 | 0.0e+00 | CCCAGCTACT | 42981 | 0.0e+00 | AGGCAGGAGA | 40402 | 0.0e+00 | GGCAGGAGAA | 9496 | 0.0e+00 | TCTCCTGCCT | 76608 | 0.0e+00 | GAGAGAGAGA | 270338 | 0.0e+00 |
| AGCACTTTGG | 425223 | 0.0e+00 | CTGTAATCCC | 42808 | 0.0e+00 | TGAGGCAGGA | 40203 | 0.0e+00 | CTCAGCCTCC | 9451 | 0.0e+00 | TTCTCCTGCC | 76447 | 0.0e+00 | AGAGAGAGAG | 261951 | 0.0e+00 |
| CCCAGCACTT | 395532 | 0.0e+00 | GCTGAGGCAG | 42218 | 0.0e+00 | GGCAGGAGAA | 39801 | 0.0e+00 | TGAGGCAGGA | 9404 | 0.0e+00 | CTCCTGACCT | 75581 | 0.0e+00 | TCTCTCTCTC | 228500 | 0.0e+00 |
| GATTACAGGC | 358792 | 0.0e+00 | CCTGTAATCC | 42023 | 0.0e+00 | GAGGCAGGAG | 39549 | 0.0e+00 | GAGGCAGGAG | 9234 | 0.0e+00 | GCCTCAGCCT | 74554 | 0.0e+00 | GGGGGGGGGG | 224391 | 0.0e+00 |
| CCAGCCTGGG | 313160 | 0.0e+00 | CTGAGGCAGG | 40648 | 0.0e+00 | CTCACTGCAA | 39129 | 0.0e+00 | GCCTCAGCCT | 9014 | 0.0e+00 | GAGGCAGGAG | 74045 | 0.0e+00 | CTCTCTCTCT | 219124 | 0.0e+00 |
| CCAAAGTGCT | 309102 | 0.0e+00 | GCTCACTGCA | 40062 | 0.0e+00 | GCTCACTGCA | 38728 | 0.0e+00 | GCAGGAGAAT | 8707 | 0.0e+00 | TGAGGCAGGA | 74000 | 0.0e+00 | ATCGGAAGAG | 210276 | 0.0e+00 |
| GTGCAGTGGC | 308125 | 0.0e+00 | AAATACAAAA | 39748 | 0.0e+00 | AAATACAAAA | 38402 | 0.0e+00 | TCTCCTGCCT | 8670 | 0.0e+00 | GGGAGGCTGA | 73699 | 0.0e+00 | GATCGGAAGA | 209807 | 0.0e+00 |
| TGCTGGGATT | 308020 | 0.0e+00 | AAAATACAAA | 39389 | 0.0e+00 | AAAATACAAA | 38155 | 0.0e+00 | TTCTCCTGCC | 8658 | 0.0e+00 | TTCCATTCCA | 73032 | 0.0e+00 | TCGGAAGAGC | 207561 | 0.0e+00 |