DRAGEN Reports

Single-Cell RNA Metrics

Trimmed Reads

Trimmer Metrics

Trimmed value is N/A when trimmer is disabled and 0 when trimmer is enabled but not applied.

Mean Base Quality by Position

Read Length Distribution

Read Quality Distribution

%GC Content

Ambiguous Base Content by Position

Adapter Content by Position

Read-Level Metrics

Base-Level Metrics

Deduplication

Read MAPQs

Mapped Coverage to Primary Contigs

Mapped Coverage to Unplaced and Alternate Contigs