ntSynt Report — Russula basidiomycete fungi

Assembly statistics

Statistic	Value
Number of assemblies	10
Range of number of chromosomes	11 – 11
Genome size range (Mbp)	36.4 – 55.1

Source: Russula_basidiomycete_fungi_assemblies/Russula_basidiomycete_fungi_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	27
Average synteny coverage (%)	6.69
Synteny coverage of smallest genome (%)	7.37
N50 length of synteny blocks (bp)	221,192

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	10
id_change	10
indel	3
inconsistent_order	3

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Russula_basidiomycete_fungi_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Russula_basidiomycete_fungi_ribbon-plot_tree.html