ntSynt Report — Patagioenas birds

Assembly statistics

Statistic	Value
Number of assemblies	16
Range of number of chromosomes	36 – 41
Genome size range (Gbp)	1.1 – 1.3

Source: Patagioenas_birds_assemblies/Patagioenas_birds_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	423
Average synteny coverage (%)	86.17
Synteny coverage of smallest genome (%)	93.51
N50 length of synteny blocks (bp)	7,830,929

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	213
indel	157
id_change	40
inconsistent_order	12

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Patagioenas_birds_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Patagioenas_birds_ribbon-plot_tree.html