ntSynt Report — Panthera carnivores

Assembly statistics

Statistic	Value
Number of assemblies	14
Range of number of chromosomes	18 – 20
Genome size range (Gbp)	2.1 – 2.5

Source: Panthera_carnivores_assemblies/Panthera_carnivores_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	2,786
Average synteny coverage (%)	86.96
Synteny coverage of smallest genome (%)	94.64
N50 length of synteny blocks (bp)	2,450,371

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	2,209
indel	366
id_change	125
inconsistent_order	80
merge	5

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Panthera_carnivores_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Panthera_carnivores_ribbon-plot_tree.html