ntSynt Report — Komagataella budding yeasts allies

Assembly statistics

Statistic	Value
Number of assemblies	10
Range of number of chromosomes	4 – 4
Genome size range (Mbp)	9.2 – 9.6

Source: Komagataella_budding_yeasts_allies_assemblies/Komagataella_budding_yeasts_allies_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	16
Average synteny coverage (%)	96.53
Synteny coverage of smallest genome (%)	98.37
N50 length of synteny blocks (bp)	1,094,799

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
id_change	7
ori_change	6
indel	1
inconsistent_order	1

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Komagataella_budding_yeasts_allies_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Komagataella_budding_yeasts_allies_ribbon-plot_tree.html