ntSynt Report — Idaea moths butterflies

Assembly statistics

Statistic	Value
Number of assemblies	22
Range of number of chromosomes	13 – 36
Genome size range (Mbp)	303.2 – 510.1

Source: Idaea_moths_butterflies_assemblies/Idaea_moths_butterflies_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	559
Average synteny coverage (%)	51.16
Synteny coverage of smallest genome (%)	53.13
N50 length of synteny blocks (bp)	656,295

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	348
ori_change	160
id_change	41
inconsistent_order	9

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Idaea_moths_butterflies_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Idaea_moths_butterflies_ribbon-plot_tree.html