ntSynt Report — Falco falcons

Assembly statistics

Statistic	Value
Number of assemblies	12
Range of number of chromosomes	19 – 27
Genome size range (Gbp)	1.0 – 1.2

Source: Falco_falcons_assemblies/Falco_falcons_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	309
Average synteny coverage (%)	83.47
Synteny coverage of smallest genome (%)	95.01
N50 length of synteny blocks (bp)	8,806,764

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	153
indel	90
id_change	44
inconsistent_order	21

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Falco_falcons_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Falco_falcons_ribbon-plot_tree.html