ntSynt Report — Eucalyptus eudicots

Assembly statistics

Statistic	Value
Number of assemblies	41
Range of number of chromosomes	11 – 22
Genome size range (Mbp)	397.7 – 1094.0

Source: Eucalyptus_eudicots_assemblies/Eucalyptus_eudicots_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	154
Average synteny coverage (%)	0.76
Synteny coverage of smallest genome (%)	1.02
N50 length of synteny blocks (bp)	47,642

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
id_change	135
indel	13
ori_change	5

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Eucalyptus_eudicots_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Eucalyptus_eudicots_ribbon-plot_tree.html