Assembly statistics
| Statistic | Value |
|---|---|
| Number of assemblies | 12 |
| Range of number of chromosomes | 11 – 22 |
| Genome size range (Mbp) | 303.3 – 1186.0 |
Source: Coffea_eudicots_assemblies/Coffea_eudicots_abyss_fac-summary.tsv
Synteny block statistics
| Statistic | Value |
|---|---|
| Number of blocks | 4,827 |
| Average synteny coverage (%) | 20.33 |
| Synteny coverage of smallest genome (%) | 39.10 |
| N50 length of synteny blocks (bp) | 68,056 |
Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv
Reasons for synteny block discontinuities
| Synteny block discontinuity reason | Count |
|---|---|
| id_change | 3,926 |
| indel | 537 |
| ori_change | 250 |
| inconsistent_order | 107 |
| merge | 6 |
Source: ntSynt.k24.w1000.discontinuity_reasons.tsv