ntSynt Report — Apamea moths butterflies

Assembly statistics

Statistic	Value
Number of assemblies	10
Range of number of chromosomes	31 – 32
Genome size range (Mbp)	546.8 – 669.4

Source: Apamea_moths_butterflies_assemblies/Apamea_moths_butterflies_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	804
Average synteny coverage (%)	88.86
Synteny coverage of smallest genome (%)	91.67
N50 length of synteny blocks (bp)	1,722,213

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	459
ori_change	303
id_change	36
merge	3
inconsistent_order	2

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Apamea_moths_butterflies_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. mt genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Apamea_moths_butterflies_ribbon-plot_tree.html