ntSynt Report — Andrena sand bees

Assembly statistics

Statistic	Value
Number of assemblies	26
Range of number of chromosomes	3 – 16
Genome size range (Mbp)	247.2 – 442.8

Source: Andrena_sand_bees_assemblies/Andrena_sand_bees_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	1,978
Average synteny coverage (%)	60.10
Synteny coverage of smallest genome (%)	73.19
N50 length of synteny blocks (bp)	256,192

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	1,149
id_change	413
indel	337
inconsistent_order	77
merge	1

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Andrena_sand_bees_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Andrena_sand_bees_ribbon-plot_tree.html