ntSynt Report — Alternaria ascomycete fungi

Assembly statistics

Statistic	Value
Number of assemblies	18
Range of number of chromosomes	6 – 12
Genome size range (Mbp)	16.3 – 35.9

Source: Alternaria_ascomycete_fungi_assemblies/Alternaria_ascomycete_fungi_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	87
Average synteny coverage (%)	33.36
Synteny coverage of smallest genome (%)	66.40
N50 length of synteny blocks (bp)	429,028

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	64
id_change	12
indel	7
inconsistent_order	3

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Alternaria_ascomycete_fungi_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Alternaria_ascomycete_fungi_ribbon-plot_tree.html