ntSynt Report — Zingiberaceae monocots

Assembly statistics

Statistic	Value
Number of assemblies	11
Range of number of chromosomes	17 – 24
Genome size range (Mbp)	265.8 – 3049.0

Source: Zingiberaceae_monocots_assemblies/Zingiberaceae_monocots_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	822
Average synteny coverage (%)	4.35
Synteny coverage of smallest genome (%)	11.23
N50 length of synteny blocks (bp)	88,439

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	542
id_change	154
ori_change	118
inconsistent_order	7

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Zingiberaceae_monocots_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Zingiberaceae_monocots_ribbon-plot_tree.html