ntSynt report — Percidae perches

Generated 2026-09-24 13:02
ntSynt multi-genome synteny pipeline

Assembly statistics

StatisticValue
Number of assemblies12
Range of number of chromosomes24 – 24
Genome size range (Mbp)624.9 – 941.5

Source: Percidae_perches_assemblies/Percidae_perches_abyss_fac-summary.tsv

Synteny block statistics

StatisticValue
Number of blocks2,315
Average synteny coverage (%)73.37
Synteny coverage of smallest genome (%)82.51
N50 length of synteny blocks (bp)693,349

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reasonCount
ori_change947
indel777
id_change470
inconsistent_order119
merge1

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Percidae_perches_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Percidae_perches_ribbon-plot_tree.html