ntSynt Report — Pangasiidae ray finned fishes

Assembly statistics

Statistic	Value
Number of assemblies	14
Range of number of chromosomes	29 – 30
Genome size range (Mbp)	578.6 – 802.8

Source: Pangasiidae_ray_finned_fishes_assemblies/Pangasiidae_ray_finned_fishes_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	9,322
Average synteny coverage (%)	87.94
Synteny coverage of smallest genome (%)	92.04
N50 length of synteny blocks (bp)	227,033

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
id_change	5,898
ori_change	1,781
indel	947
inconsistent_order	694
merge	1

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Pangasiidae_ray_finned_fishes_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Pangasiidae_ray_finned_fishes_ribbon-plot_tree.html