ntSynt Report — Lutjanidae snappers

Assembly statistics

Statistic	Value
Number of assemblies	28
Range of number of chromosomes	23 – 27
Genome size range (Mbp)	920.1 – 1127.0

Source: Lutjanidae_snappers_assemblies/Lutjanidae_snappers_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	1,395
Average synteny coverage (%)	82.86
Synteny coverage of smallest genome (%)	86.27
N50 length of synteny blocks (bp)	1,394,238

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	815
indel	281
id_change	194
inconsistent_order	104

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Lutjanidae_snappers_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Lutjanidae_snappers_ribbon-plot_tree.html