ntSynt Report — Gasterosteidae sticklebacks tubesnouts

Assembly statistics

Statistic	Value
Number of assemblies	13
Range of number of chromosomes	20 – 24
Genome size range (Mbp)	293.8 – 541.8

Source: Gasterosteidae_sticklebacks_tubesnouts_assemblies/Gasterosteidae_sticklebacks_tubesnouts_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	601
Average synteny coverage (%)	54.71
Synteny coverage of smallest genome (%)	56.96
N50 length of synteny blocks (bp)	961,144

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	342
indel	139
id_change	85
inconsistent_order	34

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Gasterosteidae_sticklebacks_tubesnouts_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Gasterosteidae_sticklebacks_tubesnouts_ribbon-plot_tree.html