ntSynt Report — Elaeagnaceae eudicots

Assembly statistics

Statistic	Value
Number of assemblies	10
Range of number of chromosomes	12 – 14
Genome size range (Mbp)	519.9 – 1172.0

Source: Elaeagnaceae_eudicots_assemblies/Elaeagnaceae_eudicots_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	1,053
Average synteny coverage (%)	49.85
Synteny coverage of smallest genome (%)	61.97
N50 length of synteny blocks (bp)	1,000,487

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	585
ori_change	340
id_change	106
inconsistent_order	21

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Elaeagnaceae_eudicots_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Elaeagnaceae_eudicots_ribbon-plot_tree.html