ntSynt Report — Caricaceae eudicots

Assembly statistics

Statistic	Value
Number of assemblies	31
Range of number of chromosomes	9 – 10
Genome size range (Mbp)	319.2 – 996.1

Source: Caricaceae_eudicots_assemblies/Caricaceae_eudicots_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	1,187
Average synteny coverage (%)	40.04
Synteny coverage of smallest genome (%)	42.47
N50 length of synteny blocks (bp)	269,255

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	803
ori_change	286
inconsistent_order	56
id_change	41

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Caricaceae_eudicots_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Caricaceae_eudicots_ribbon-plot_tree.html