ntSynt Report — Camelidae even toed ungulates whales

Assembly statistics

Statistic	Value
Number of assemblies	10
Range of number of chromosomes	36 – 38
Genome size range (Gbp)	1.8 – 2.4

Source: Camelidae_even_toed_ungulates_whales_assemblies/Camelidae_even_toed_ungulates_whales_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	2,620
Average synteny coverage (%)	77.87
Synteny coverage of smallest genome (%)	88.92
N50 length of synteny blocks (bp)	2,339,980

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	1,519
indel	702
id_change	261
inconsistent_order	136
merge	1

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Camelidae_even_toed_ungulates_whales_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Camelidae_even_toed_ungulates_whales_ribbon-plot_tree.html