ntSynt Report — Bromeliaceae monocots

Assembly statistics

Statistic	Value
Number of assemblies	10
Range of number of chromosomes	23 – 26
Genome size range (Mbp)	311.3 – 973.4

Source: Bromeliaceae_monocots_assemblies/Bromeliaceae_monocots_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	928
Average synteny coverage (%)	29.05
Synteny coverage of smallest genome (%)	40.98
N50 length of synteny blocks (bp)	448,876

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	397
indel	380
id_change	109
inconsistent_order	41

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Bromeliaceae_monocots_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Bromeliaceae_monocots_ribbon-plot_tree.html