ntSynt Report — Verticillium ascomycete fungi

Assembly statistics

Statistic	Value
Number of assemblies	10
Range of number of chromosomes	8 – 8
Genome size range (Mbp)	24.6 – 38.3

Source: Verticillium_ascomycete_fungi_assemblies/Verticillium_ascomycete_fungi_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	111
Average synteny coverage (%)	70.32
Synteny coverage of smallest genome (%)	93.40
N50 length of synteny blocks (bp)	388,645

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
id_change	54
ori_change	32
indel	24

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Verticillium_ascomycete_fungi_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Verticillium_ascomycete_fungi_ribbon-plot_tree.html