ntSynt Report — Schistosoma flatworms

Assembly statistics

Statistic	Value
Number of assemblies	19
Range of number of chromosomes	8 – 11
Genome size range (Mbp)	368.9 – 416.3

Source: Schistosoma_flatworms_assemblies/Schistosoma_flatworms_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	394
Average synteny coverage (%)	21.66
Synteny coverage of smallest genome (%)	22.84
N50 length of synteny blocks (bp)	372,195

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	280
indel	82
inconsistent_order	18
id_change	13

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Schistosoma_flatworms_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Schistosoma_flatworms_ribbon-plot_tree.html