ntSynt Report — Salmo ray finned fishes

Assembly statistics

Statistic	Value
Number of assemblies	10
Range of number of chromosomes	27 – 40
Genome size range (Gbp)	2.1 – 2.9

Source: Salmo_ray_finned_fishes_assemblies/Salmo_ray_finned_fishes_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	10,576
Average synteny coverage (%)	76.61
Synteny coverage of smallest genome (%)	86.36
N50 length of synteny blocks (bp)	1,166,705

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	4,274
id_change	3,107
indel	2,029
inconsistent_order	1,091
merge	74

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Salmo_ray_finned_fishes_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Salmo_ray_finned_fishes_ribbon-plot_tree.html