ntSynt Report — Rhinolophus bats

Assembly statistics

Statistic	Value
Number of assemblies	17
Range of number of chromosomes	14 – 32
Genome size range (Gbp)	2.0 – 2.2

Source: Rhinolophus_bats_assemblies/Rhinolophus_bats_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	2,634
Average synteny coverage (%)	87.11
Synteny coverage of smallest genome (%)	92.33
N50 length of synteny blocks (bp)	2,433,006

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	1,698
indel	640
inconsistent_order	210
id_change	85

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Rhinolophus_bats_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Rhinolophus_bats_ribbon-plot_tree.html