ntSynt Report — Pyrgus moths butterflies

Assembly statistics

Statistic	Value
Number of assemblies	11
Range of number of chromosomes	24 – 31
Genome size range (Mbp)	693.0 – 798.3

Source: Pyrgus_moths_butterflies_assemblies/Pyrgus_moths_butterflies_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	997
Average synteny coverage (%)	91.51
Synteny coverage of smallest genome (%)	94.16
N50 length of synteny blocks (bp)	1,711,504

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	540
ori_change	315
id_change	132
inconsistent_order	9

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Pyrgus_moths_butterflies_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Pyrgus_moths_butterflies_ribbon-plot_tree.html