ntSynt Report — Oryzias ray finned fishes

Assembly statistics

Statistic	Value
Number of assemblies	14
Range of number of chromosomes	23 – 24
Genome size range (Mbp)	582.1 – 851.1

Source: Oryzias_ray_finned_fishes_assemblies/Oryzias_ray_finned_fishes_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	1,377
Average synteny coverage (%)	74.97
Synteny coverage of smallest genome (%)	80.79
N50 length of synteny blocks (bp)	992,735

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	462
ori_change	449
id_change	386
inconsistent_order	79

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Oryzias_ray_finned_fishes_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Oryzias_ray_finned_fishes_ribbon-plot_tree.html