ntSynt Report — Humulus eudicots

Assembly statistics

Statistic	Value
Number of assemblies	11
Range of number of chromosomes	9 – 11
Genome size range (Gbp)	2.2 – 2.6

Source: Humulus_eudicots_assemblies/Humulus_eudicots_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	2,563
Average synteny coverage (%)	21.25
Synteny coverage of smallest genome (%)	23.86
N50 length of synteny blocks (bp)	374,112

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	1,915
ori_change	568
inconsistent_order	52
id_change	24
merge	3

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Humulus_eudicots_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Humulus_eudicots_ribbon-plot_tree.html