ntSynt Report — Eupithecia moths butterflies

Assembly statistics

Statistic	Value
Number of assemblies	38
Range of number of chromosomes	24 – 44
Genome size range (Mbp)	332.2 – 630.6

Source: Eupithecia_moths_butterflies_assemblies/Eupithecia_moths_butterflies_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	587
Average synteny coverage (%)	28.97
Synteny coverage of smallest genome (%)	31.53
N50 length of synteny blocks (bp)	363,626

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	355
ori_change	173
id_change	48
inconsistent_order	10

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Eupithecia_moths_butterflies_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Eupithecia_moths_butterflies_ribbon-plot_tree.html