ntSynt Report — Epichloe ascomycete fungi

Assembly statistics

Statistic	Value
Number of assemblies	15
Range of number of chromosomes	7 – 7
Genome size range (Mbp)	33.1 – 46.1

Source: Epichloe_ascomycete_fungi_assemblies/Epichloe_ascomycete_fungi_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	916
Average synteny coverage (%)	55.24
Synteny coverage of smallest genome (%)	62.34
N50 length of synteny blocks (bp)	44,274

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	480
ori_change	278
id_change	146
inconsistent_order	11

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Epichloe_ascomycete_fungi_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. mt genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Epichloe_ascomycete_fungi_ribbon-plot_tree.html