ntSynt Report — Cheilosia flies

Assembly statistics

Statistic	Value
Number of assemblies	12
Range of number of chromosomes	5 – 7
Genome size range (Mbp)	353.9 – 871.2

Source: Cheilosia_flies_assemblies/Cheilosia_flies_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	911
Average synteny coverage (%)	66.88
Synteny coverage of smallest genome (%)	71.06
N50 length of synteny blocks (bp)	831,649

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
indel	471
ori_change	420
id_change	11
inconsistent_order	8

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Cheilosia_flies_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. mt genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Cheilosia_flies_ribbon-plot_tree.html