ntSynt Report — Cervus even toed ungulates whales

Assembly statistics

Statistic	Value
Number of assemblies	11
Range of number of chromosomes	33 – 35
Genome size range (Gbp)	1.9 – 2.9

Source: Cervus_even_toed_ungulates_whales_assemblies/Cervus_even_toed_ungulates_whales_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	8,057
Average synteny coverage (%)	88.10
Synteny coverage of smallest genome (%)	94.80
N50 length of synteny blocks (bp)	1,057,941

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	2,532
indel	2,140
id_change	1,762
inconsistent_order	1,604
merge	18

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Cervus_even_toed_ungulates_whales_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Cervus_even_toed_ungulates_whales_ribbon-plot_tree.html