ntSynt Report — Actinidia eudicots

Assembly statistics

Statistic	Value
Number of assemblies	12
Range of number of chromosomes	29 – 29
Genome size range (Mbp)	528.4 – 658.0

Source: Actinidia_eudicots_assemblies/Actinidia_eudicots_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	5,010
Average synteny coverage (%)	64.65
Synteny coverage of smallest genome (%)	68.63
N50 length of synteny blocks (bp)	228,782

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	2,042
indel	1,552
id_change	868
inconsistent_order	542
merge	5

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Actinidia_eudicots_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Actinidia_eudicots_ribbon-plot_tree.html