ntSynt Report — Pleuronectidae righteye flounders

Assembly statistics

Statistic	Value
Number of assemblies	21
Range of number of chromosomes	23 – 24
Genome size range (Mbp)	460.7 – 675.1

Source: Pleuronectidae_righteye_flounders_assemblies/Pleuronectidae_righteye_flounders_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	877
Average synteny coverage (%)	75.31
Synteny coverage of smallest genome (%)	80.34
N50 length of synteny blocks (bp)	1,070,688

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	440
indel	271
id_change	123
inconsistent_order	42

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Pleuronectidae_righteye_flounders_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Pleuronectidae_righteye_flounders_ribbon-plot_tree.html