ntSynt Report — Paridae titmice

Assembly statistics

Statistic	Value
Number of assemblies	13
Range of number of chromosomes	28 – 41
Genome size range (Mbp)	943.6 – 1233.0

Source: Paridae_titmice_assemblies/Paridae_titmice_abyss_fac-summary.tsv

Synteny block statistics

Statistic	Value
Number of blocks	508
Average synteny coverage (%)	79.66
Synteny coverage of smallest genome (%)	89.58
N50 length of synteny blocks (bp)	6,704,624

Source: ntSynt.k24.w1000.synteny_blocks.stats.tsv

Reasons for synteny block discontinuities

Synteny block discontinuity reason	Count
ori_change	292
indel	135
id_change	59
inconsistent_order	21

Source: ntSynt.k24.w1000.discontinuity_reasons.tsv

Mash divergence distributions

Pairwise mash distances across full-genome, syntenic, and non-syntenic regions. Wilcoxon signed-rank test p-value shown between syntenic and non-syntenic distributions. Interactive — hover over a point to see the genome pair. Source: mash/mash_divergence_boxplot.html

Synteny ribbon plot

Paridae_titmice_ribbon-plot_tree

ntSynt-viz ribbon plot showing synteny blocks across all assemblies. Nuclear genome tree included in ribbon plot. Interactive — hover to highlight, click to pin tooltips. Source: ntsynt-viz/Paridae_titmice_ribbon-plot_tree.html